Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1449910 | sp|Q9SR72|GL32_ARATH | 60.194 | 206 | 70 | 3 | 13 | 209 | 19 | 221 | 2.16e-85 | 254 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1449910 | A0A072VRM6 | 97.619 | 210 | 5 | 0 | 1 | 210 | 1 | 210 | 9.23e-147 | 416 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa1449910 | -0.812353 | 4.425721e-51 | -8.615850e-47 |
| Msa0004060 | Msa1449910 | 0.818606 | 1.795298e-52 | -8.615850e-47 |
| Msa0030280 | Msa1449910 | 0.838586 | 2.633702e-57 | -8.615850e-47 |
| Msa0032320 | Msa1449910 | 0.803187 | 3.930105e-49 | -8.615850e-47 |
| Msa0032610 | Msa1449910 | 0.814817 | 1.270049e-51 | -8.615850e-47 |
| Msa0077880 | Msa1449910 | 0.838289 | 3.141551e-57 | -8.615850e-47 |
| Msa0090030 | Msa1449910 | 0.813660 | 2.287818e-51 | -8.615850e-47 |
| Msa0094010 | Msa1449910 | 0.821648 | 3.611418e-53 | -8.615850e-47 |
| Msa0097850 | Msa1449910 | 0.808184 | 3.509220e-50 | -8.615850e-47 |
| Msa0099510 | Msa1449910 | 0.833182 | 6.175204e-56 | -8.615850e-47 |
| Msa0100800 | Msa1449910 | 0.802412 | 5.678675e-49 | -8.615850e-47 |
| Msa0115830 | Msa1449910 | 0.835237 | 1.886225e-56 | -8.615850e-47 |
| Msa0118000 | Msa1449910 | 0.842079 | 3.218610e-58 | -8.615850e-47 |
| Msa1360890 | Msa1449910 | -0.846337 | 2.313783e-59 | -8.615850e-47 |
| Msa1363700 | Msa1449910 | 0.807502 | 4.898785e-50 | -8.615850e-47 |
| Msa1370620 | Msa1449910 | 0.824542 | 7.628206e-54 | -8.615850e-47 |
| Msa1390120 | Msa1449910 | 0.823396 | 1.417096e-53 | -8.615850e-47 |
| Msa1390230 | Msa1449910 | 0.803272 | 3.773867e-49 | -8.615850e-47 |
| Msa1395530 | Msa1449910 | 0.819648 | 1.039982e-52 | -8.615850e-47 |
| Msa1398860 | Msa1449910 | 0.805009 | 1.641242e-49 | -8.615850e-47 |
| Msa1400610 | Msa1449910 | -0.811400 | 7.135505e-51 | -8.615850e-47 |
| Msa1411400 | Msa1449910 | -0.802776 | 4.778747e-49 | -8.615850e-47 |
| Msa1422840 | Msa1449910 | 0.808181 | 3.513485e-50 | -8.615850e-47 |
| Msa1422910 | Msa1449910 | 0.811633 | 6.348529e-51 | -8.615850e-47 |
| Msa1433220 | Msa1449910 | 0.805971 | 1.031658e-49 | -8.615850e-47 |
| Msa1442220 | Msa1449910 | -0.833974 | 3.917554e-56 | -8.615850e-47 |
| Msa1447110 | Msa1449910 | 0.910928 | 1.080633e-82 | -8.615850e-47 |
| Msa1449910 | Msa1466090 | 0.825407 | 4.766285e-54 | -8.615850e-47 |
| Msa0610500 | Msa1449910 | 0.813000 | 3.193761e-51 | -8.615850e-47 |
| Msa0619180 | Msa1449910 | 0.812535 | 4.037874e-51 | -8.615850e-47 |
| Msa0626680 | Msa1449910 | 0.857116 | 2.032470e-62 | -8.615850e-47 |
| Msa0633760 | Msa1449910 | 0.847715 | 9.703710e-60 | -8.615850e-47 |
| Msa0648520 | Msa1449910 | 0.833461 | 5.263682e-56 | -8.615850e-47 |
| Msa0651150 | Msa1449910 | 0.829495 | 4.987135e-55 | -8.615850e-47 |
| Msa0664760 | Msa1449910 | 0.875825 | 2.270504e-68 | -8.615850e-47 |
| Msa0691050 | Msa1449910 | 0.828079 | 1.097494e-54 | -8.615850e-47 |
| Msa0704800 | Msa1449910 | 0.800518 | 1.388166e-48 | -8.615850e-47 |
| Msa0711490 | Msa1449910 | 0.801547 | 8.552005e-49 | -8.615850e-47 |
| Msa0743680 | Msa1449910 | 0.836356 | 9.815851e-57 | -8.615850e-47 |
| Msa0744090 | Msa1449910 | 0.811543 | 6.642774e-51 | -8.615850e-47 |
| Msa0753770 | Msa1449910 | 0.821807 | 3.318340e-53 | -8.615850e-47 |
| Msa0754720 | Msa1449910 | -0.811535 | 6.668070e-51 | -8.615850e-47 |
| Msa0758230 | Msa1449910 | 0.815975 | 7.017072e-52 | -8.615850e-47 |
| Msa0780900 | Msa1449910 | 0.804083 | 2.561216e-49 | -8.615850e-47 |
| Msa0784620 | Msa1449910 | 0.826145 | 3.185095e-54 | -8.615850e-47 |
| Msa0824730 | Msa1449910 | 0.830360 | 3.067683e-55 | -8.615850e-47 |
| Msa0825280 | Msa1449910 | 0.818195 | 2.225088e-52 | -8.615850e-47 |
| Msa0837650 | Msa1449910 | 0.809431 | 1.898954e-50 | -8.615850e-47 |
| Msa0125370 | Msa1449910 | -0.821315 | 4.309400e-53 | -8.615850e-47 |
| Msa0125770 | Msa1449910 | 0.828104 | 1.082072e-54 | -8.615850e-47 |
| Msa0138970 | Msa1449910 | -0.824488 | 7.856617e-54 | -8.615850e-47 |
| Msa0140520 | Msa1449910 | -0.810756 | 9.841764e-51 | -8.615850e-47 |
| Msa0148120 | Msa1449910 | 0.802745 | 4.849138e-49 | -8.615850e-47 |
| Msa0152840 | Msa1449910 | 0.801474 | 8.850899e-49 | -8.615850e-47 |
| Msa0172780 | Msa1449910 | 0.811941 | 5.441470e-51 | -8.615850e-47 |
| Msa0178030 | Msa1449910 | -0.801566 | 8.475687e-49 | -8.615850e-47 |
| Msa0196020 | Msa1449910 | -0.817673 | 2.918575e-52 | -8.615850e-47 |
| Msa0196340 | Msa1449910 | 0.849129 | 3.941970e-60 | -8.615850e-47 |
| Msa0208810 | Msa1449910 | 0.852514 | 4.392422e-61 | -8.615850e-47 |
| Msa0212750 | Msa1449910 | -0.814592 | 1.424389e-51 | -8.615850e-47 |
| Msa0219250 | Msa1449910 | -0.826233 | 3.035656e-54 | -8.615850e-47 |
| Msa0222920 | Msa1449910 | 0.820572 | 6.389178e-53 | -8.615850e-47 |
| Msa0229940 | Msa1449910 | 0.804383 | 2.218116e-49 | -8.615850e-47 |
| Msa0238230 | Msa1449910 | 0.868396 | 6.736539e-66 | -8.615850e-47 |
| Msa1236070 | Msa1449910 | -0.817040 | 4.053192e-52 | -8.615850e-47 |
| Msa1253810 | Msa1449910 | 0.839170 | 1.859806e-57 | -8.615850e-47 |
| Msa1259070 | Msa1449910 | -0.801227 | 9.943460e-49 | -8.615850e-47 |
| Msa1262960 | Msa1449910 | 0.823269 | 1.517077e-53 | -8.615850e-47 |
| Msa1280620 | Msa1449910 | 0.801187 | 1.013628e-48 | -8.615850e-47 |
| Msa1293480 | Msa1449910 | -0.804760 | 1.850503e-49 | -8.615850e-47 |
| Msa1294960 | Msa1449910 | 0.806842 | 6.758501e-50 | -8.615850e-47 |
| Msa1302060 | Msa1449910 | 0.824161 | 9.375763e-54 | -8.615850e-47 |
| Msa1311960 | Msa1449910 | 0.807671 | 4.509716e-50 | -8.615850e-47 |
| Msa1318620 | Msa1449910 | 0.808232 | 3.426856e-50 | -8.615850e-47 |
| Msa1333970 | Msa1449910 | 0.802581 | 5.242522e-49 | -8.615850e-47 |
| Msa1337730 | Msa1449910 | 0.803859 | 2.851195e-49 | -8.615850e-47 |
| Msa1340040 | Msa1449910 | -0.837086 | 6.396708e-57 | -8.615850e-47 |
| Msa0374250 | Msa1449910 | 0.843822 | 1.106359e-58 | -8.615850e-47 |
| Msa0377530 | Msa1449910 | 0.809174 | 2.155884e-50 | -8.615850e-47 |
| Msa0426810 | Msa1449910 | 0.802442 | 5.600743e-49 | -8.615850e-47 |
| Msa0431770 | Msa1449910 | 0.825230 | 5.249853e-54 | -8.615850e-47 |
| Msa0437510 | Msa1449910 | 0.990842 | 1.360017e-184 | -8.615850e-47 |
| Msa0462220 | Msa1449910 | 0.815671 | 8.202503e-52 | -8.615850e-47 |
| Msa0465920 | Msa1449910 | 0.815351 | 9.666047e-52 | -8.615850e-47 |
| Msa0465960 | Msa1449910 | 0.800173 | 1.631557e-48 | -8.615850e-47 |
| Msa0469790 | Msa1449910 | 0.845322 | 4.365085e-59 | -8.615850e-47 |
| Msa0469820 | Msa1449910 | 0.828926 | 6.850442e-55 | -8.615850e-47 |
| Msa0469910 | Msa1449910 | -0.817287 | 3.566928e-52 | -8.615850e-47 |
| Msa0474590 | Msa1449910 | 0.820676 | 6.047684e-53 | -8.615850e-47 |
| Msa1000930 | Msa1449910 | 0.809943 | 1.473793e-50 | -8.615850e-47 |
| Msa1033660 | Msa1449910 | 0.813325 | 2.710172e-51 | -8.615850e-47 |
| Msa1037650 | Msa1449910 | -0.803530 | 3.336870e-49 | -8.615850e-47 |
| Msa1038210 | Msa1449910 | -0.813353 | 2.671708e-51 | -8.615850e-47 |
| Msa1087510 | Msa1449910 | -0.805551 | 1.264200e-49 | -8.615850e-47 |
| Msa0252240 | Msa1449910 | 0.810572 | 1.078182e-50 | -8.615850e-47 |
| Msa0258880 | Msa1449910 | -0.822971 | 1.780710e-53 | -8.615850e-47 |
| Msa0275400 | Msa1449910 | -0.826665 | 2.395415e-54 | -8.615850e-47 |
| Msa0288730 | Msa1449910 | 0.823930 | 1.062648e-53 | -8.615850e-47 |
| Msa0295000 | Msa1449910 | -0.833032 | 6.730313e-56 | -8.615850e-47 |
| Msa0298950 | Msa1449910 | 0.809363 | 1.963572e-50 | -8.615850e-47 |
| Msa0308220 | Msa1449910 | 0.804877 | 1.749687e-49 | -8.615850e-47 |
| Msa1118760 | Msa1449910 | 0.807290 | 5.433185e-50 | -8.615850e-47 |
| Msa1118940 | Msa1449910 | 0.817411 | 3.344791e-52 | -8.615850e-47 |
| Msa1158660 | Msa1449910 | 0.812770 | 3.586242e-51 | -8.615850e-47 |
| Msa1162830 | Msa1449910 | 0.812590 | 3.928236e-51 | -8.615850e-47 |
| Msa1173900 | Msa1449910 | 0.805222 | 1.481516e-49 | -8.615850e-47 |
| Msa1178370 | Msa1449910 | 0.842577 | 2.374714e-58 | -8.615850e-47 |
| Msa1198880 | Msa1449910 | 0.829255 | 5.702241e-55 | -8.615850e-47 |
| Msa1208890 | Msa1449910 | -0.810302 | 1.233028e-50 | -8.615850e-47 |
| Msa1211050 | Msa1449910 | -0.816026 | 6.835454e-52 | -8.615850e-47 |
| Msa1223330 | Msa1449910 | 0.818935 | 1.511464e-52 | -8.615850e-47 |
| Msa0517490 | Msa1449910 | 0.818700 | 1.709879e-52 | -8.615850e-47 |
| Msa0527910 | Msa1449910 | 0.816636 | 4.993596e-52 | -8.615850e-47 |
| Msa0536790 | Msa1449910 | 0.808554 | 2.924842e-50 | -8.615850e-47 |
| Msa0542160 | Msa1449910 | 0.823849 | 1.110084e-53 | -8.615850e-47 |
| Msa0578090 | Msa1449910 | 0.869642 | 2.656267e-66 | -8.615850e-47 |
| Msa0586850 | Msa1449910 | 0.869639 | 2.663401e-66 | -8.615850e-47 |
| Msa0602370 | Msa1449910 | 0.811475 | 6.871719e-51 | -8.615850e-47 |
| Msa0851470 | Msa1449910 | 0.806132 | 9.543523e-50 | -8.615850e-47 |
| Msa0863800 | Msa1449910 | 0.818443 | 1.954978e-52 | -8.615850e-47 |
| Msa0930910 | Msa1449910 | -0.802892 | 4.521280e-49 | -8.615850e-47 |
| Msa0945100 | Msa1449910 | 0.801451 | 8.948176e-49 | -8.615850e-47 |
| Msa0947530 | Msa1449910 | -0.852421 | 4.667022e-61 | -8.615850e-47 |
| Msa0977310 | Msa1449910 | 0.803265 | 3.786263e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1449910 | MtrunA17_Chr1g0210761 | 97.619 | 210 | 5 | 0 | 1 | 210 | 1 | 210 | 1.78e-150 | 416 |
| Msa1449910 | MtrunA17_Chr1g0178711 | 57.353 | 204 | 76 | 1 | 17 | 209 | 20 | 223 | 3.20e-83 | 246 |
| Msa1449910 | MtrunA17_Chr1g0193671 | 42.381 | 210 | 114 | 3 | 7 | 209 | 7 | 216 | 1.40e-53 | 171 |
| Msa1449910 | MtrunA17_Chr7g0271211 | 44.898 | 196 | 99 | 4 | 22 | 209 | 19 | 213 | 3.13e-52 | 167 |
| Msa1449910 | MtrunA17_Chr1g0193421 | 43.434 | 198 | 105 | 3 | 19 | 209 | 20 | 217 | 2.92e-51 | 165 |
| Msa1449910 | MtrunA17_Chr6g0449751 | 44.186 | 215 | 104 | 6 | 7 | 207 | 3 | 215 | 1.59e-48 | 158 |
| Msa1449910 | MtrunA17_Chr6g0449731 | 44.444 | 216 | 105 | 6 | 5 | 207 | 2 | 215 | 3.82e-48 | 157 |
| Msa1449910 | MtrunA17_Chr6g0449761 | 44.186 | 215 | 107 | 5 | 5 | 207 | 2 | 215 | 7.78e-48 | 157 |
| Msa1449910 | MtrunA17_Chr6g0449771 | 44.444 | 216 | 105 | 6 | 5 | 207 | 2 | 215 | 1.12e-47 | 155 |
| Msa1449910 | MtrunA17_Chr1g0189841 | 44.554 | 202 | 97 | 6 | 19 | 207 | 18 | 217 | 1.16e-47 | 155 |
| Msa1449910 | MtrunA17_Chr4g0007051 | 42.512 | 207 | 91 | 7 | 19 | 206 | 18 | 215 | 3.03e-45 | 149 |
| Msa1449910 | MtrunA17_Chr4g0007031 | 42.584 | 209 | 88 | 7 | 19 | 206 | 18 | 215 | 3.10e-45 | 149 |
| Msa1449910 | MtrunA17_Chr5g0419971 | 42.584 | 209 | 88 | 7 | 19 | 206 | 18 | 215 | 3.10e-45 | 149 |
| Msa1449910 | MtrunA17_Chr5g0419981 | 42.584 | 209 | 88 | 7 | 19 | 206 | 18 | 215 | 3.10e-45 | 149 |
| Msa1449910 | MtrunA17_Chr4g0007041 | 41.071 | 224 | 95 | 8 | 9 | 206 | 3 | 215 | 1.01e-44 | 148 |
| Msa1449910 | MtrunA17_Chr2g0285871 | 42.584 | 209 | 88 | 7 | 19 | 206 | 18 | 215 | 1.84e-44 | 147 |
| Msa1449910 | MtrunA17_Chr1g0156131 | 40.099 | 202 | 114 | 4 | 11 | 207 | 10 | 209 | 8.17e-44 | 145 |
| Msa1449910 | MtrunA17_Chr5g0414971 | 42.268 | 194 | 104 | 4 | 22 | 207 | 26 | 219 | 2.37e-43 | 145 |
| Msa1449910 | MtrunA17_Chr2g0292831 | 41.538 | 195 | 106 | 5 | 20 | 207 | 19 | 212 | 4.97e-43 | 144 |
| Msa1449910 | MtrunA17_Chr2g0292901 | 42.021 | 188 | 101 | 5 | 27 | 207 | 27 | 213 | 8.87e-43 | 143 |
| Msa1449910 | MtrunA17_Chr2g0300581 | 37.255 | 204 | 119 | 3 | 9 | 205 | 3 | 204 | 1.41e-38 | 132 |
| Msa1449910 | MtrunA17_Chr2g0300591 | 37.438 | 203 | 118 | 3 | 9 | 204 | 3 | 203 | 1.59e-38 | 132 |
| Msa1449910 | MtrunA17_Chr6g0449781 | 40.196 | 204 | 100 | 6 | 19 | 207 | 18 | 214 | 2.58e-38 | 132 |
| Msa1449910 | MtrunA17_Chr2g0292861 | 42.697 | 178 | 84 | 5 | 42 | 207 | 7 | 178 | 4.12e-38 | 130 |
| Msa1449910 | MtrunA17_Chr2g0300561 | 37.313 | 201 | 121 | 2 | 9 | 204 | 3 | 203 | 1.14e-37 | 130 |
| Msa1449910 | MtrunA17_Chr2g0292841 | 42.442 | 172 | 93 | 4 | 42 | 207 | 7 | 178 | 1.35e-36 | 126 |
| Msa1449910 | MtrunA17_Chr8g0343911 | 36.538 | 208 | 114 | 5 | 10 | 205 | 1 | 202 | 3.29e-36 | 126 |
| Msa1449910 | MtrunA17_Chr2g0313961 | 34.783 | 207 | 124 | 5 | 8 | 207 | 3 | 205 | 6.31e-35 | 122 |
| Msa1449910 | MtrunA17_Chr8g0344041 | 33.014 | 209 | 131 | 5 | 5 | 207 | 4 | 209 | 1.99e-34 | 121 |
| Msa1449910 | MtrunA17_Chr3g0084531 | 34.300 | 207 | 125 | 5 | 8 | 207 | 3 | 205 | 3.37e-34 | 120 |
| Msa1449910 | MtrunA17_Chr2g0297231 | 33.981 | 206 | 127 | 4 | 8 | 207 | 3 | 205 | 4.21e-34 | 120 |
| Msa1449910 | MtrunA17_Chr8g0343921 | 32.850 | 207 | 128 | 5 | 8 | 207 | 1 | 203 | 7.24e-34 | 120 |
| Msa1449910 | MtrunA17_Chr8g0343934 | 35.437 | 206 | 124 | 6 | 8 | 207 | 3 | 205 | 8.87e-34 | 120 |
| Msa1449910 | MtrunA17_Chr2g0321601 | 34.286 | 210 | 112 | 5 | 12 | 208 | 8 | 204 | 9.79e-34 | 119 |
| Msa1449910 | MtrunA17_Chr6g0449791 | 39.109 | 202 | 108 | 5 | 7 | 197 | 9 | 206 | 2.39e-33 | 119 |
| Msa1449910 | MtrunA17_Chr3g0130241 | 41.176 | 170 | 88 | 2 | 15 | 172 | 75 | 244 | 4.16e-33 | 120 |
| Msa1449910 | MtrunA17_Chr2g0297241 | 33.495 | 206 | 128 | 4 | 8 | 207 | 3 | 205 | 8.53e-33 | 117 |
| Msa1449910 | MtrunA17_Chr3g0084521 | 35.266 | 207 | 119 | 6 | 8 | 207 | 6 | 204 | 2.23e-32 | 116 |
| Msa1449910 | MtrunA17_Chr2g0302171 | 36.517 | 178 | 106 | 4 | 33 | 207 | 32 | 205 | 2.78e-32 | 116 |
| Msa1449910 | MtrunA17_Chr8g0343954 | 37.433 | 187 | 108 | 6 | 27 | 207 | 22 | 205 | 4.54e-32 | 115 |
| Msa1449910 | MtrunA17_Chr8g0335851 | 34.896 | 192 | 117 | 2 | 17 | 200 | 20 | 211 | 6.06e-32 | 115 |
| Msa1449910 | MtrunA17_Chr3g0084511 | 35.749 | 207 | 118 | 7 | 8 | 207 | 6 | 204 | 1.02e-31 | 114 |
| Msa1449910 | MtrunA17_Chr2g0301611 | 32.850 | 207 | 128 | 5 | 8 | 207 | 3 | 205 | 3.83e-31 | 113 |
| Msa1449910 | MtrunA17_Chr4g0003361 | 33.163 | 196 | 122 | 4 | 16 | 207 | 11 | 201 | 5.37e-31 | 112 |
| Msa1449910 | MtrunA17_Chr8g0343961 | 33.990 | 203 | 125 | 5 | 11 | 207 | 6 | 205 | 9.41e-31 | 112 |
| Msa1449910 | MtrunA17_Chr4g0026191 | 33.019 | 212 | 122 | 5 | 5 | 208 | 7 | 206 | 1.54e-30 | 111 |
| Msa1449910 | MtrunA17_Chr2g0321581 | 31.731 | 208 | 120 | 5 | 12 | 208 | 9 | 205 | 5.10e-30 | 110 |
| Msa1449910 | MtrunA17_Chr2g0321591 | 31.731 | 208 | 120 | 5 | 12 | 208 | 9 | 205 | 5.49e-30 | 110 |
| Msa1449910 | MtrunA17_Chr8g0344021 | 33.173 | 208 | 128 | 4 | 8 | 207 | 4 | 208 | 1.01e-29 | 109 |
| Msa1449910 | MtrunA17_Chr4g0026201 | 37.500 | 160 | 96 | 2 | 53 | 208 | 47 | 206 | 1.05e-29 | 109 |
| Msa1449910 | MtrunA17_Chr2g0302541 | 34.043 | 188 | 113 | 5 | 27 | 207 | 22 | 205 | 6.07e-28 | 104 |
| Msa1449910 | MtrunA17_Chr3g0115141 | 34.595 | 185 | 110 | 5 | 29 | 207 | 27 | 206 | 7.54e-28 | 104 |
| Msa1449910 | MtrunA17_Chr4g0012651 | 32.979 | 188 | 115 | 4 | 27 | 207 | 22 | 205 | 3.20e-27 | 103 |
| Msa1449910 | MtrunA17_Chr7g0217811 | 31.351 | 185 | 122 | 2 | 27 | 207 | 22 | 205 | 5.80e-27 | 102 |
| Msa1449910 | MtrunA17_Chr5g0411961 | 30.097 | 206 | 135 | 4 | 8 | 207 | 3 | 205 | 1.10e-26 | 101 |
| Msa1449910 | MtrunA17_Chr8g0344051 | 30.097 | 206 | 137 | 3 | 8 | 207 | 4 | 208 | 1.23e-26 | 101 |
| Msa1449910 | MtrunA17_Chr2g0292911 | 45.299 | 117 | 61 | 2 | 42 | 155 | 7 | 123 | 1.24e-26 | 99.4 |
| Msa1449910 | MtrunA17_Chr8g0344031 | 32.381 | 210 | 126 | 8 | 8 | 207 | 4 | 207 | 2.45e-26 | 100 |
| Msa1449910 | MtrunA17_Chr2g0286171 | 31.720 | 186 | 114 | 7 | 29 | 207 | 29 | 208 | 6.46e-24 | 94.4 |
| Msa1449910 | MtrunA17_Chr3g0084551 | 29.064 | 203 | 129 | 5 | 8 | 204 | 3 | 196 | 5.87e-21 | 87.0 |
| Msa1449910 | MtrunA17_Chr3g0084501 | 34.906 | 106 | 59 | 4 | 8 | 106 | 3 | 105 | 4.19e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1449910 | AT3G10080.1 | 60.194 | 206 | 70 | 3 | 13 | 209 | 19 | 221 | 2.19e-86 | 254 |
| Msa1449910 | AT3G10080.2 | 60.194 | 206 | 70 | 3 | 13 | 209 | 90 | 292 | 8.00e-86 | 256 |
| Msa1449910 | AT1G02335.1 | 42.791 | 215 | 115 | 4 | 1 | 207 | 1 | 215 | 2.84e-56 | 178 |
| Msa1449910 | AT3G04200.1 | 45.540 | 213 | 103 | 5 | 8 | 209 | 14 | 224 | 2.01e-54 | 173 |
| Msa1449910 | AT1G18980.1 | 45.192 | 208 | 105 | 4 | 7 | 207 | 13 | 218 | 8.80e-53 | 169 |
| Msa1449910 | AT1G18970.1 | 42.788 | 208 | 110 | 4 | 7 | 207 | 13 | 218 | 4.44e-52 | 167 |
| Msa1449910 | AT5G26700.1 | 40.865 | 208 | 116 | 4 | 7 | 209 | 6 | 211 | 5.87e-52 | 167 |
| Msa1449910 | AT5G39160.3 | 41.346 | 208 | 112 | 5 | 7 | 207 | 11 | 215 | 5.19e-51 | 164 |
| Msa1449910 | AT3G62020.1 | 43.204 | 206 | 109 | 4 | 12 | 209 | 12 | 217 | 5.27e-51 | 164 |
| Msa1449910 | AT5G39160.1 | 40.845 | 213 | 110 | 6 | 7 | 207 | 11 | 219 | 6.23e-51 | 164 |
| Msa1449910 | AT3G05950.1 | 44.393 | 214 | 104 | 6 | 7 | 208 | 12 | 222 | 9.50e-51 | 164 |
| Msa1449910 | AT5G39130.1 | 40.376 | 213 | 111 | 6 | 7 | 207 | 11 | 219 | 1.03e-50 | 164 |
| Msa1449910 | AT5G39190.1 | 40.845 | 213 | 110 | 6 | 7 | 207 | 11 | 219 | 1.13e-50 | 164 |
| Msa1449910 | AT5G38960.1 | 44.059 | 202 | 99 | 5 | 19 | 207 | 22 | 222 | 3.19e-50 | 162 |
| Msa1449910 | AT1G09560.1 | 44.103 | 195 | 102 | 3 | 22 | 209 | 23 | 217 | 5.69e-50 | 162 |
| Msa1449910 | AT3G05930.1 | 38.710 | 217 | 125 | 3 | 1 | 209 | 1 | 217 | 6.32e-49 | 159 |
| Msa1449910 | AT5G39110.1 | 41.014 | 217 | 113 | 6 | 5 | 207 | 5 | 220 | 2.70e-48 | 157 |
| Msa1449910 | AT5G38940.1 | 42.424 | 198 | 101 | 5 | 22 | 207 | 25 | 221 | 1.04e-47 | 156 |
| Msa1449910 | AT5G38940.2 | 42.424 | 198 | 101 | 5 | 22 | 207 | 49 | 245 | 1.55e-47 | 156 |
| Msa1449910 | AT5G39150.1 | 40.183 | 219 | 105 | 6 | 8 | 207 | 8 | 219 | 1.58e-47 | 155 |
| Msa1449910 | AT5G39180.1 | 40.183 | 219 | 105 | 6 | 8 | 207 | 8 | 219 | 2.42e-47 | 155 |
| Msa1449910 | AT5G38910.1 | 41.860 | 215 | 110 | 6 | 6 | 207 | 7 | 219 | 2.71e-47 | 155 |
| Msa1449910 | AT3G62020.2 | 45.699 | 186 | 95 | 4 | 28 | 209 | 5 | 188 | 3.30e-47 | 154 |
| Msa1449910 | AT5G39120.1 | 40.000 | 225 | 106 | 7 | 5 | 207 | 2 | 219 | 4.48e-47 | 154 |
| Msa1449910 | AT5G39160.2 | 39.130 | 207 | 100 | 6 | 7 | 207 | 11 | 197 | 1.65e-45 | 150 |
| Msa1449910 | AT3G04180.1 | 40.000 | 200 | 109 | 4 | 20 | 208 | 23 | 222 | 2.30e-45 | 150 |
| Msa1449910 | AT5G39190.2 | 39.130 | 207 | 100 | 6 | 7 | 207 | 11 | 197 | 2.75e-45 | 149 |
| Msa1449910 | AT3G04170.1 | 41.784 | 213 | 110 | 5 | 8 | 210 | 13 | 221 | 2.95e-45 | 150 |
| Msa1449910 | AT3G04150.1 | 40.094 | 212 | 114 | 5 | 8 | 208 | 13 | 222 | 7.33e-45 | 149 |
| Msa1449910 | AT4G14630.1 | 39.500 | 200 | 107 | 5 | 21 | 207 | 24 | 222 | 1.77e-44 | 148 |
| Msa1449910 | AT3G04190.1 | 40.796 | 201 | 106 | 5 | 20 | 208 | 23 | 222 | 4.90e-44 | 147 |
| Msa1449910 | AT5G38930.1 | 40.201 | 199 | 106 | 5 | 21 | 207 | 24 | 221 | 1.36e-43 | 145 |
| Msa1449910 | AT3G04150.2 | 38.667 | 225 | 112 | 6 | 8 | 208 | 13 | 235 | 3.18e-43 | 145 |
| Msa1449910 | AT5G20630.1 | 39.344 | 183 | 106 | 2 | 27 | 204 | 22 | 204 | 3.40e-40 | 137 |
| Msa1449910 | AT1G10460.1 | 37.186 | 199 | 111 | 5 | 22 | 207 | 18 | 215 | 2.09e-39 | 135 |
| Msa1449910 | AT5G61750.1 | 39.785 | 186 | 92 | 5 | 9 | 181 | 5 | 183 | 1.51e-34 | 122 |
| Msa1449910 | AT1G72610.1 | 37.838 | 185 | 106 | 3 | 27 | 204 | 19 | 201 | 1.23e-33 | 120 |
| Msa1449910 | AT1G74820.1 | 31.390 | 223 | 134 | 6 | 2 | 208 | 7 | 226 | 7.63e-33 | 118 |
| Msa1449910 | AT5G38910.2 | 35.211 | 213 | 90 | 6 | 6 | 207 | 7 | 182 | 1.55e-30 | 111 |
| Msa1449910 | AT5G38950.1 | 49.206 | 63 | 30 | 1 | 138 | 198 | 2 | 64 | 2.53e-12 | 61.6 |
Find 21 sgRNAs with CRISPR-Local
Find 42 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGATTAAAGATGAGCTTT+TGG | 0.232327 | tig0032745:-8659 | Msa1449910:CDS |
| GAATTTGTTATCTTCTGATT+TGG | 0.267937 | tig0032745:+9107 | None:intergenic |
| CCAGTTTCTTTGAAGTTTCC+TGG | 0.322734 | tig0032745:+9024 | None:intergenic |
| TTCTGATCCGGATCCTGTTA+TGG | 0.323739 | tig0032745:-9142 | Msa1449910:CDS |
| CCAGGAAACTTCAAAGAAAC+TGG | 0.339479 | tig0032745:-9024 | Msa1449910:CDS |
| GTGAATTCAAATGTGTTTCC+AGG | 0.358885 | tig0032745:-8985 | Msa1449910:CDS |
| TTTGGAGAAAGGTGAGGTTA+TGG | 0.393881 | tig0032745:-8803 | Msa1449910:CDS |
| TGAAAATGCACAAGTCCTCT+TGG | 0.414763 | tig0032745:+8775 | None:intergenic |
| GCTATGCAGTAATCCATAAC+AGG | 0.434646 | tig0032745:+9129 | None:intergenic |
| ATAGCAACTTCTGTTGCTCT+TGG | 0.444865 | tig0032745:+8889 | None:intergenic |
| CAGTAATCCATAACAGGATC+CGG | 0.469062 | tig0032745:+9135 | None:intergenic |
| TTTCCAGGTTTAAACACTCT+TGG | 0.469660 | tig0032745:-8970 | Msa1449910:CDS |
| CAGCAATGATGAAACACATA+AGG | 0.504374 | tig0032745:+9172 | None:intergenic |
| ACACATAAGGACTAAAAGAA+TGG | 0.521199 | tig0032745:+9185 | None:intergenic |
| AGAAGTTGCTATTGTGTTGG+AGG | 0.523101 | tig0032745:-8878 | Msa1449910:CDS |
| AACAGAAGTTGCTATTGTGT+TGG | 0.541553 | tig0032745:-8881 | Msa1449910:CDS |
| GAAGTTGCTATTGTGTTGGA+GGG | 0.567803 | tig0032745:-8877 | Msa1449910:CDS |
| ACTCCAAGAGTGTTTAAACC+TGG | 0.567991 | tig0032745:+8967 | None:intergenic |
| GAAATCTTCAACTGTTGCTG+TGG | 0.571728 | tig0032745:+9068 | None:intergenic |
| AGCTTTCTAAGTTAAAGAAG+AGG | 0.576087 | tig0032745:-8609 | Msa1449910:CDS |
| GTTGCTCTTGGATGAAAGTG+AGG | 0.618955 | tig0032745:+8901 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAATTTGTTATCTTCTGATT+TGG | + | tig0032745:8694-8713 | None:intergenic | 25.0% |
| !! | CAAGATTTTTGCTAAAGTTT+TGG | - | tig0032745:8977-8996 | Msa1449910:CDS | 25.0% |
| !!! | AAAATTCCAAATGCTGTTTT+TGG | - | tig0032745:9113-9132 | Msa1449910:CDS | 25.0% |
| ACACATAAGGACTAAAAGAA+TGG | + | tig0032745:8616-8635 | None:intergenic | 30.0% | |
| !!! | GTTGAAGATTTCACTTTTTC+TGG | - | tig0032745:8741-8760 | Msa1449910:CDS | 30.0% |
| !! | TTTTCTGGTATAAAACTACC+AGG | - | tig0032745:8756-8775 | Msa1449910:CDS | 30.0% |
| ! | AGAAACTGGATTTTCTTCAA+TGG | - | tig0032745:8788-8807 | Msa1449910:CDS | 30.0% |
| ! | GAAACTGGATTTTCTTCAAT+GGG | - | tig0032745:8789-8808 | Msa1449910:CDS | 30.0% |
| TTGGAGGGAAAAATTTATTC+AGG | - | tig0032745:8936-8955 | Msa1449910:CDS | 30.0% | |
| !!! | TTTGCTAAAGTTTTGGAGAA+AGG | - | tig0032745:8984-9003 | Msa1449910:CDS | 30.0% |
| AAACTACCAAAAATAGTAGC+AGG | + | tig0032745:9068-9087 | None:intergenic | 30.0% | |
| !! | AGTTTTGATAGTCAAAATCC+TGG | - | tig0032745:9083-9102 | Msa1449910:CDS | 30.0% |
| !! | TTTGGAATTTTCATCAAACC+AGG | + | tig0032745:9104-9123 | None:intergenic | 30.0% |
| ! | TGAGATTAAAGATGAGCTTT+TGG | - | tig0032745:9139-9158 | Msa1449910:CDS | 30.0% |
| ! | AGCTTTTGGACTTAATTCTA+AGG | - | tig0032745:9166-9185 | Msa1449910:CDS | 30.0% |
| AGCTTTCTAAGTTAAAGAAG+AGG | - | tig0032745:9189-9208 | Msa1449910:CDS | 30.0% | |
| CAGCAATGATGAAACACATA+AGG | + | tig0032745:8629-8648 | None:intergenic | 35.0% | |
| GTGAATTCAAATGTGTTTCC+AGG | - | tig0032745:8813-8832 | Msa1449910:CDS | 35.0% | |
| TTTCCAGGTTTAAACACTCT+TGG | - | tig0032745:8828-8847 | Msa1449910:CDS | 35.0% | |
| !! | GTTAGAGCAGATTTTGATGT+TGG | - | tig0032745:8861-8880 | Msa1449910:CDS | 35.0% |
| ! | AACAGAAGTTGCTATTGTGT+TGG | - | tig0032745:8917-8936 | Msa1449910:CDS | 35.0% |
| !!! | TAAAGTTTTGGAGAAAGGTG+AGG | - | tig0032745:8989-9008 | Msa1449910:CDS | 35.0% |
| ! | GTGCATTTTCAGATGAATGT+TGG | - | tig0032745:9035-9054 | Msa1449910:CDS | 35.0% |
| ! | GATGTTCCTGCTACTATTTT+TGG | - | tig0032745:9059-9078 | Msa1449910:CDS | 35.0% |
| TCAGATCCAAAAACAGCATT+TGG | + | tig0032745:9122-9141 | None:intergenic | 35.0% | |
| !! | GAGCTTTTGGAAAAAGCTTT+TGG | - | tig0032745:9152-9171 | Msa1449910:CDS | 35.0% |
| !!! | TGCTGCTTTTTGTTCTGATC+CGG | - | tig0032745:8644-8663 | Msa1449910:CDS | 40.0% |
| CAGTAATCCATAACAGGATC+CGG | + | tig0032745:8666-8685 | None:intergenic | 40.0% | |
| GCTATGCAGTAATCCATAAC+AGG | + | tig0032745:8672-8691 | None:intergenic | 40.0% | |
| GAAATCTTCAACTGTTGCTG+TGG | + | tig0032745:8733-8752 | None:intergenic | 40.0% | |
| !! | CCAGTTTCTTTGAAGTTTCC+TGG | + | tig0032745:8777-8796 | None:intergenic | 40.0% |
| CCAGGAAACTTCAAAGAAAC+TGG | - | tig0032745:8774-8793 | Msa1449910:CDS | 40.0% | |
| !! | ACTCCAAGAGTGTTTAAACC+TGG | + | tig0032745:8834-8853 | None:intergenic | 40.0% |
| !! | AGAGCAGATTTTGATGTTGG+TGG | - | tig0032745:8864-8883 | Msa1449910:CDS | 40.0% |
| ATAGCAACTTCTGTTGCTCT+TGG | + | tig0032745:8912-8931 | None:intergenic | 40.0% | |
| ! | AGAAGTTGCTATTGTGTTGG+AGG | - | tig0032745:8920-8939 | Msa1449910:CDS | 40.0% |
| ! | GAAGTTGCTATTGTGTTGGA+GGG | - | tig0032745:8921-8940 | Msa1449910:CDS | 40.0% |
| TTTGGAGAAAGGTGAGGTTA+TGG | - | tig0032745:8995-9014 | Msa1449910:CDS | 40.0% | |
| ! | GAGGTTATGGTTTTTCCAAG+AGG | - | tig0032745:9008-9027 | Msa1449910:CDS | 40.0% |
| TGAAAATGCACAAGTCCTCT+TGG | + | tig0032745:9026-9045 | None:intergenic | 40.0% | |
| TTCTGATCCGGATCCTGTTA+TGG | - | tig0032745:8656-8675 | Msa1449910:CDS | 45.0% | |
| GTTGCTCTTGGATGAAAGTG+AGG | + | tig0032745:8900-8919 | None:intergenic | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0032745 | gene | 8594 | 9226 | 8594 | ID=Msa1449910;Name=Msa1449910 |
| tig0032745 | mRNA | 8594 | 9226 | 8594 | ID=Msa1449910-mRNA-1;Parent=Msa1449910;Name=Msa1449910-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|-1|0|1|-1|1|1|0|210 |
| tig0032745 | exon | 8594 | 9226 | 8594 | ID=Msa1449910-mRNA-1:exon:17187;Parent=Msa1449910-mRNA-1 |
| tig0032745 | CDS | 8594 | 9226 | 8594 | ID=Msa1449910-mRNA-1:cds;Parent=Msa1449910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
