Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0790610 | XP_003593045.1 | 97.959 | 147 | 3 | 0 | 1 | 147 | 1 | 147 | 4.18e-97 | 286 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0790610 | A2Q3U1 | 97.959 | 147 | 3 | 0 | 1 | 147 | 1 | 147 | 2.00e-97 | 286 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0004540 | Msa0790610 | 0.802996 | 4.303876e-49 | -8.615850e-47 |
Msa0016670 | Msa0790610 | 0.819827 | 9.466376e-53 | -8.615850e-47 |
Msa0027260 | Msa0790610 | 0.802613 | 5.163208e-49 | -8.615850e-47 |
Msa0032370 | Msa0790610 | 0.805843 | 1.097353e-49 | -8.615850e-47 |
Msa0048180 | Msa0790610 | 0.805238 | 1.470403e-49 | -8.615850e-47 |
Msa0052610 | Msa0790610 | 0.847802 | 9.181844e-60 | -8.615850e-47 |
Msa0052690 | Msa0790610 | 0.819502 | 1.123123e-52 | -8.615850e-47 |
Msa0057610 | Msa0790610 | 0.820578 | 6.370638e-53 | -8.615850e-47 |
Msa0057710 | Msa0790610 | 0.828220 | 1.014757e-54 | -8.615850e-47 |
Msa0067870 | Msa0790610 | 0.828766 | 7.491798e-55 | -8.615850e-47 |
Msa0073670 | Msa0790610 | 0.818170 | 2.253759e-52 | -8.615850e-47 |
Msa0074320 | Msa0790610 | 0.808879 | 2.492541e-50 | -8.615850e-47 |
Msa0076040 | Msa0790610 | 0.807603 | 4.663988e-50 | -8.615850e-47 |
Msa0077680 | Msa0790610 | 0.822301 | 2.549246e-53 | -8.615850e-47 |
Msa0097850 | Msa0790610 | 0.851971 | 6.269861e-61 | -8.615850e-47 |
Msa0103240 | Msa0790610 | 0.806649 | 7.422788e-50 | -8.615850e-47 |
Msa0107250 | Msa0790610 | 0.801960 | 7.035298e-49 | -8.615850e-47 |
Msa0107280 | Msa0790610 | 0.808250 | 3.396155e-50 | -8.615850e-47 |
Msa0609450 | Msa0790610 | 0.801923 | 7.160887e-49 | -8.615850e-47 |
Msa0616240 | Msa0790610 | 0.806495 | 8.003133e-50 | -8.615850e-47 |
Msa0620990 | Msa0790610 | 0.811370 | 7.243237e-51 | -8.615850e-47 |
Msa0638480 | Msa0790610 | 0.807598 | 4.673860e-50 | -8.615850e-47 |
Msa0654870 | Msa0790610 | 0.806973 | 6.340924e-50 | -8.615850e-47 |
Msa0661710 | Msa0790610 | 0.807403 | 5.142785e-50 | -8.615850e-47 |
Msa0666230 | Msa0790610 | 0.810490 | 1.123505e-50 | -8.615850e-47 |
Msa0679700 | Msa0790610 | 0.809606 | 1.741167e-50 | -8.615850e-47 |
Msa0690250 | Msa0790610 | 0.806098 | 9.700882e-50 | -8.615850e-47 |
Msa0692080 | Msa0790610 | 0.812581 | 3.944367e-51 | -8.615850e-47 |
Msa0699570 | Msa0790610 | 0.804853 | 1.769243e-49 | -8.615850e-47 |
Msa0703230 | Msa0790610 | 0.820598 | 6.303562e-53 | -8.615850e-47 |
Msa0738040 | Msa0790610 | 0.800970 | 1.122473e-48 | -8.615850e-47 |
Msa0765270 | Msa0790610 | 0.800478 | 1.414355e-48 | -8.615850e-47 |
Msa0784380 | Msa0790610 | 0.820397 | 7.007624e-53 | -8.615850e-47 |
Msa0788770 | Msa0790610 | 0.814105 | 1.824552e-51 | -8.615850e-47 |
Msa0790610 | Msa0808800 | 0.802335 | 5.892287e-49 | -8.615850e-47 |
Msa0790610 | Msa0818170 | 0.828922 | 6.866932e-55 | -8.615850e-47 |
Msa0790610 | Msa0895790 | 0.806064 | 9.862969e-50 | -8.615850e-47 |
Msa0790610 | Msa0927990 | 0.813023 | 3.156728e-51 | -8.615850e-47 |
Msa0790610 | Msa0960830 | 0.832545 | 8.892286e-56 | -8.615850e-47 |
Msa0790610 | Msa0977310 | 0.802097 | 6.593318e-49 | -8.615850e-47 |
Msa0790610 | Msa1000930 | 0.823887 | 1.087126e-53 | -8.615850e-47 |
Msa0790610 | Msa1004420 | 0.804173 | 2.452612e-49 | -8.615850e-47 |
Msa0790610 | Msa1019240 | 0.809593 | 1.752768e-50 | -8.615850e-47 |
Msa0790610 | Msa1019260 | 0.804968 | 1.674297e-49 | -8.615850e-47 |
Msa0790610 | Msa1055010 | 0.812373 | 4.379810e-51 | -8.615850e-47 |
Msa0790610 | Msa1066490 | 0.839673 | 1.376989e-57 | -8.615850e-47 |
Msa0790610 | Msa1079230 | 0.822473 | 2.325290e-53 | -8.615850e-47 |
Msa0790610 | Msa1082700 | 0.802586 | 5.228468e-49 | -8.615850e-47 |
Msa0790610 | Msa1094420 | 0.812376 | 4.374908e-51 | -8.615850e-47 |
Msa0790610 | Msa1104210 | 0.812376 | 4.373414e-51 | -8.615850e-47 |
Msa0790610 | Msa1124110 | 0.807446 | 5.034190e-50 | -8.615850e-47 |
Msa0790610 | Msa1126510 | 0.805951 | 1.041631e-49 | -8.615850e-47 |
Msa0790610 | Msa1126770 | 0.801614 | 8.287232e-49 | -8.615850e-47 |
Msa0790610 | Msa1131170 | 0.817014 | 4.108432e-52 | -8.615850e-47 |
Msa0790610 | Msa1131560 | 0.806081 | 9.779055e-50 | -8.615850e-47 |
Msa0790610 | Msa1134110 | 0.841583 | 4.351649e-58 | -8.615850e-47 |
Msa0790610 | Msa1155520 | 0.818596 | 1.805295e-52 | -8.615850e-47 |
Msa0790610 | Msa1166870 | 0.813633 | 2.319024e-51 | -8.615850e-47 |
Msa0790610 | Msa1168950 | 0.819615 | 1.058239e-52 | -8.615850e-47 |
Msa0790610 | Msa1169040 | 0.820121 | 8.107566e-53 | -8.615850e-47 |
Msa0790610 | Msa1173300 | 0.816215 | 6.203166e-52 | -8.615850e-47 |
Msa0790610 | Msa1181850 | 0.814058 | 1.869518e-51 | -8.615850e-47 |
Msa0790610 | Msa1181860 | 0.814605 | 1.414666e-51 | -8.615850e-47 |
Msa0790610 | Msa1183660 | 0.806729 | 7.141845e-50 | -8.615850e-47 |
Msa0790610 | Msa1184370 | 0.801550 | 8.539862e-49 | -8.615850e-47 |
Msa0790610 | Msa1202580 | 0.816120 | 6.513422e-52 | -8.615850e-47 |
Msa0790610 | Msa1227690 | 0.808911 | 2.453589e-50 | -8.615850e-47 |
Msa0790610 | Msa1230580 | 0.811848 | 5.702606e-51 | -8.615850e-47 |
Msa0790610 | Msa1253810 | 0.805644 | 1.208439e-49 | -8.615850e-47 |
Msa0790610 | Msa1256470 | 0.806969 | 6.352740e-50 | -8.615850e-47 |
Msa0790610 | Msa1295110 | 0.820952 | 5.226621e-53 | -8.615850e-47 |
Msa0790610 | Msa1307600 | 0.809169 | 2.160630e-50 | -8.615850e-47 |
Msa0790610 | Msa1359270 | 0.815537 | 8.786617e-52 | -8.615850e-47 |
Msa0790610 | Msa1363330 | 0.840898 | 6.589166e-58 | -8.615850e-47 |
Msa0790610 | Msa1379760 | 0.819981 | 8.729976e-53 | -8.615850e-47 |
Msa0790610 | Msa1385890 | 0.800546 | 1.369979e-48 | -8.615850e-47 |
Msa0790610 | Msa1386600 | 0.840428 | 8.747381e-58 | -8.615850e-47 |
Msa0790610 | Msa1386710 | 0.831833 | 1.333923e-55 | -8.615850e-47 |
Msa0790610 | Msa1406040 | 0.805018 | 1.634469e-49 | -8.615850e-47 |
Msa0790610 | Msa1442850 | 0.810686 | 1.018739e-50 | -8.615850e-47 |
Msa0790610 | Msa1448510 | 0.801692 | 7.985726e-49 | -8.615850e-47 |
Msa0790610 | Msa1448690 | 0.801409 | 9.128384e-49 | -8.615850e-47 |
Msa0790610 | Msa1450280 | 0.825811 | 3.824250e-54 | -8.615850e-47 |
Msa0790610 | Msa1461490 | 0.816201 | 6.246695e-52 | -8.615850e-47 |
Msa0128860 | Msa0790610 | 0.818422 | 1.976095e-52 | -8.615850e-47 |
Msa0167480 | Msa0790610 | 0.830016 | 3.722905e-55 | -8.615850e-47 |
Msa0174730 | Msa0790610 | 0.815982 | 6.992836e-52 | -8.615850e-47 |
Msa0181610 | Msa0790610 | 0.807883 | 4.065155e-50 | -8.615850e-47 |
Msa0186890 | Msa0790610 | 0.820501 | 6.635399e-53 | -8.615850e-47 |
Msa0187690 | Msa0790610 | 0.805388 | 1.367247e-49 | -8.615850e-47 |
Msa0187930 | Msa0790610 | 0.820364 | 7.133134e-53 | -8.615850e-47 |
Msa0188350 | Msa0790610 | 0.824339 | 8.517196e-54 | -8.615850e-47 |
Msa0188890 | Msa0790610 | 0.993607 | 6.371529e-201 | -8.615850e-47 |
Msa0194540 | Msa0790610 | 0.821472 | 3.965907e-53 | -8.615850e-47 |
Msa0199690 | Msa0790610 | 0.802451 | 5.574848e-49 | -8.615850e-47 |
Msa0199880 | Msa0790610 | 0.807848 | 4.135723e-50 | -8.615850e-47 |
Msa0226330 | Msa0790610 | 0.820638 | 6.170976e-53 | -8.615850e-47 |
Msa0226460 | Msa0790610 | 0.826241 | 3.021687e-54 | -8.615850e-47 |
Msa0231100 | Msa0790610 | 0.832306 | 1.019295e-55 | -8.615850e-47 |
Msa0231380 | Msa0790610 | 0.997440 | 1.461579e-242 | -8.615850e-47 |
Msa0233730 | Msa0790610 | 0.805303 | 1.425033e-49 | -8.615850e-47 |
Msa0236270 | Msa0790610 | 0.805051 | 1.608603e-49 | -8.615850e-47 |
Msa0365100 | Msa0790610 | 0.805904 | 1.065511e-49 | -8.615850e-47 |
Msa0376040 | Msa0790610 | 0.813012 | 3.174246e-51 | -8.615850e-47 |
Msa0392940 | Msa0790610 | 0.820514 | 6.590670e-53 | -8.615850e-47 |
Msa0402820 | Msa0790610 | 0.813617 | 2.338081e-51 | -8.615850e-47 |
Msa0416400 | Msa0790610 | 0.806685 | 7.296602e-50 | -8.615850e-47 |
Msa0428240 | Msa0790610 | 0.809837 | 1.553280e-50 | -8.615850e-47 |
Msa0429950 | Msa0790610 | 0.805716 | 1.167014e-49 | -8.615850e-47 |
Msa0431770 | Msa0790610 | 0.810788 | 9.685718e-51 | -8.615850e-47 |
Msa0241800 | Msa0790610 | 0.816826 | 4.527168e-52 | -8.615850e-47 |
Msa0242680 | Msa0790610 | 0.821976 | 3.032204e-53 | -8.615850e-47 |
Msa0244780 | Msa0790610 | 0.814822 | 1.267003e-51 | -8.615850e-47 |
Msa0254940 | Msa0790610 | 0.824294 | 8.725259e-54 | -8.615850e-47 |
Msa0259160 | Msa0790610 | 0.801279 | 9.705949e-49 | -8.615850e-47 |
Msa0268130 | Msa0790610 | 0.809856 | 1.538718e-50 | -8.615850e-47 |
Msa0270660 | Msa0790610 | 0.998247 | 8.139473e-260 | -8.615850e-47 |
Msa0277450 | Msa0790610 | 0.834278 | 3.287467e-56 | -8.615850e-47 |
Msa0280430 | Msa0790610 | 0.805729 | 1.159928e-49 | -8.615850e-47 |
Msa0296250 | Msa0790610 | 0.816370 | 5.727442e-52 | -8.615850e-47 |
Msa0298990 | Msa0790610 | 0.806662 | 7.376231e-50 | -8.615850e-47 |
Msa0304590 | Msa0790610 | 0.820133 | 8.056235e-53 | -8.615850e-47 |
Msa0304660 | Msa0790610 | 0.816056 | 6.730735e-52 | -8.615850e-47 |
Msa0317160 | Msa0790610 | 0.801015 | 1.099181e-48 | -8.615850e-47 |
Msa0331700 | Msa0790610 | 0.816517 | 5.308538e-52 | -8.615850e-47 |
Msa0337650 | Msa0790610 | 0.802158 | 6.405378e-49 | -8.615850e-47 |
Msa0508590 | Msa0790610 | 0.837014 | 6.673947e-57 | -8.615850e-47 |
Msa0508630 | Msa0790610 | 0.818508 | 1.889352e-52 | -8.615850e-47 |
Msa0516040 | Msa0790610 | 0.814173 | 1.762610e-51 | -8.615850e-47 |
Msa0517840 | Msa0790610 | 0.815451 | 9.185470e-52 | -8.615850e-47 |
Msa0519130 | Msa0790610 | 0.808989 | 2.361408e-50 | -8.615850e-47 |
Msa0526540 | Msa0790610 | 0.842514 | 2.468962e-58 | -8.615850e-47 |
Msa0527150 | Msa0790610 | 0.820649 | 6.134391e-53 | -8.615850e-47 |
Msa0541860 | Msa0790610 | 0.818751 | 1.664447e-52 | -8.615850e-47 |
Msa0555910 | Msa0790610 | 0.806829 | 6.801092e-50 | -8.615850e-47 |
Msa0561430 | Msa0790610 | 0.803414 | 3.526597e-49 | -8.615850e-47 |
Msa0571920 | Msa0790610 | 0.811735 | 6.033473e-51 | -8.615850e-47 |
Msa0576940 | Msa0790610 | 0.834778 | 2.461599e-56 | -8.615850e-47 |
Msa0581070 | Msa0790610 | 0.811430 | 7.029146e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0790610 | MtrunA17_Chr2g0277971 | 97.959 | 147 | 3 | 0 | 1 | 147 | 1 | 147 | 3.84e-101 | 286 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0790610 | AT1G60870.1 | 59.184 | 147 | 60 | 0 | 1 | 147 | 1 | 147 | 1.64e-33 | 115 |
Find 26 sgRNAs with CRISPR-Local
Find 25 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGCTGAGAAAGCAAGAAATA+TGG | 0.282094 | 5_3:-1484032 | Msa0790610:CDS |
GCTTGGAAAGGAATTTCTTC+TGG | 0.317736 | 5_3:-1483923 | Msa0790610:CDS |
AGCAGCTGCCCATGCTTTGT+AGG | 0.349595 | 5_3:+1484216 | None:intergenic |
AAGAAATATGGGAAACTTGA+TGG | 0.389367 | 5_3:-1484020 | Msa0790610:CDS |
GTGCCATGGATGAATTTAGA+AGG | 0.394252 | 5_3:-1484111 | Msa0790610:CDS |
GGAATATCTCGACTCGGCTA+TGG | 0.422650 | 5_3:-1484137 | Msa0790610:CDS |
GAGGATTTCAAGAGATGAAG+TGG | 0.462068 | 5_3:-1484071 | Msa0790610:CDS |
GCTGAGAAAGCAAGAAATAT+GGG | 0.463308 | 5_3:-1484031 | Msa0790610:CDS |
ATAAGATCTTCGATCGTCGA+TGG | 0.506443 | 5_3:+1484259 | None:intergenic |
GAAAGGAATTTCTTCTGGCA+AGG | 0.513277 | 5_3:-1483918 | Msa0790610:CDS |
AGATAGAATCCTACAAAGCA+TGG | 0.513381 | 5_3:-1484225 | Msa0790610:CDS |
AAAGGAAGGTGAACTGAGAA+AGG | 0.516993 | 5_3:+1484314 | None:intergenic |
CTGCTTCTATGAAATCTGCT+TGG | 0.529588 | 5_3:-1483940 | Msa0790610:CDS |
GGTTTGAAGAAGAACTTGAG+AGG | 0.547329 | 5_3:-1484090 | Msa0790610:CDS |
AAACCTTCTAAATTCATCCA+TGG | 0.552800 | 5_3:+1484108 | None:intergenic |
TAAAGATTGATCTGAAAGGA+AGG | 0.570141 | 5_3:+1484300 | None:intergenic |
AAAGTATATATGTATCAAGA+TGG | 0.576287 | 5_3:+1483890 | None:intergenic |
CTCGGCTATGGAAAGTGCCA+TGG | 0.577831 | 5_3:-1484125 | Msa0790610:CDS |
TCTATGAAATCTGCTTGGAA+AGG | 0.578134 | 5_3:-1483935 | Msa0790610:CDS |
CATGTAAAGATTGATCTGAA+AGG | 0.594535 | 5_3:+1484296 | None:intergenic |
AGCCGAGTCGAGATATTCCT+CGG | 0.604035 | 5_3:+1484141 | None:intergenic |
TGAACTTGAGCAAGAAAGAG+AGG | 0.624850 | 5_3:-1484194 | Msa0790610:CDS |
AGCCGAGGAATATCTCGACT+CGG | 0.631008 | 5_3:-1484143 | Msa0790610:CDS |
GATAGAATCCTACAAAGCAT+GGG | 0.638623 | 5_3:-1484224 | Msa0790610:CDS |
AGATGCAATGCAAGAAGCCG+AGG | 0.640190 | 5_3:-1484158 | Msa0790610:CDS |
ACTTGAGCAAGAAAGAGAGG+TGG | 0.641638 | 5_3:-1484191 | Msa0790610:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
TAAAGATTGATCTGAAAGGA+AGG | + | chr5_3:1483932-1483951 | None:intergenic | 30.0% | |
CATGTAAAGATTGATCTGAA+AGG | + | chr5_3:1483936-1483955 | None:intergenic | 30.0% | |
AAACCTTCTAAATTCATCCA+TGG | + | chr5_3:1484124-1484143 | None:intergenic | 30.0% | |
AAGAAATATGGGAAACTTGA+TGG | - | chr5_3:1484209-1484228 | Msa0790610:CDS | 30.0% | |
AGATAGAATCCTACAAAGCA+TGG | - | chr5_3:1484004-1484023 | Msa0790610:CDS | 35.0% | |
GATAGAATCCTACAAAGCAT+GGG | - | chr5_3:1484005-1484024 | Msa0790610:CDS | 35.0% | |
AGCTGAGAAAGCAAGAAATA+TGG | - | chr5_3:1484197-1484216 | Msa0790610:CDS | 35.0% | |
GCTGAGAAAGCAAGAAATAT+GGG | - | chr5_3:1484198-1484217 | Msa0790610:CDS | 35.0% | |
TCTATGAAATCTGCTTGGAA+AGG | - | chr5_3:1484294-1484313 | Msa0790610:CDS | 35.0% | |
AAAGGAAGGTGAACTGAGAA+AGG | + | chr5_3:1483918-1483937 | None:intergenic | 40.0% | |
ATAAGATCTTCGATCGTCGA+TGG | + | chr5_3:1483973-1483992 | None:intergenic | 40.0% | |
TGAACTTGAGCAAGAAAGAG+AGG | - | chr5_3:1484035-1484054 | Msa0790610:CDS | 40.0% | |
GTGCCATGGATGAATTTAGA+AGG | - | chr5_3:1484118-1484137 | Msa0790610:CDS | 40.0% | |
GGTTTGAAGAAGAACTTGAG+AGG | - | chr5_3:1484139-1484158 | Msa0790610:CDS | 40.0% | |
GAGGATTTCAAGAGATGAAG+TGG | - | chr5_3:1484158-1484177 | Msa0790610:CDS | 40.0% | |
CTGCTTCTATGAAATCTGCT+TGG | - | chr5_3:1484289-1484308 | Msa0790610:CDS | 40.0% | |
GCTTGGAAAGGAATTTCTTC+TGG | - | chr5_3:1484306-1484325 | Msa0790610:CDS | 40.0% | |
GAAAGGAATTTCTTCTGGCA+AGG | - | chr5_3:1484311-1484330 | Msa0790610:CDS | 40.0% | |
ACTTGAGCAAGAAAGAGAGG+TGG | - | chr5_3:1484038-1484057 | Msa0790610:CDS | 45.0% | |
AGATGCAATGCAAGAAGCCG+AGG | - | chr5_3:1484071-1484090 | Msa0790610:CDS | 50.0% | |
AGCCGAGGAATATCTCGACT+CGG | - | chr5_3:1484086-1484105 | Msa0790610:CDS | 50.0% | |
AGCCGAGTCGAGATATTCCT+CGG | + | chr5_3:1484091-1484110 | None:intergenic | 50.0% | |
!! | GGAATATCTCGACTCGGCTA+TGG | - | chr5_3:1484092-1484111 | Msa0790610:CDS | 50.0% |
AGCAGCTGCCCATGCTTTGT+AGG | + | chr5_3:1484016-1484035 | None:intergenic | 55.0% | |
!! | CTCGGCTATGGAAAGTGCCA+TGG | - | chr5_3:1484104-1484123 | Msa0790610:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_3 | gene | 1483904 | 1484347 | 1483904 | ID=Msa0790610;Name=Msa0790610 |
chr5_3 | mRNA | 1483904 | 1484347 | 1483904 | ID=Msa0790610-mRNA-1;Parent=Msa0790610;Name=Msa0790610-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|147 |
chr5_3 | exon | 1483904 | 1484347 | 1483904 | ID=Msa0790610-mRNA-1:exon:524;Parent=Msa0790610-mRNA-1 |
chr5_3 | CDS | 1483904 | 1484347 | 1483904 | ID=Msa0790610-mRNA-1:cds;Parent=Msa0790610-mRNA-1 |
Gene Sequence |
Protein sequence |