Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437510 | XP_013470283.1 | 97.619 | 210 | 5 | 0 | 1 | 210 | 1 | 210 | 1.93e-146 | 416 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437510 | sp|Q9SR72|GL32_ARATH | 60.194 | 206 | 70 | 3 | 13 | 209 | 19 | 221 | 2.16e-85 | 254 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437510 | A0A072VRM6 | 97.619 | 210 | 5 | 0 | 1 | 210 | 1 | 210 | 9.23e-147 | 416 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa0437510 | -0.811914 | 5.516570e-51 | -8.615850e-47 |
| Msa0004060 | Msa0437510 | 0.820557 | 6.440792e-53 | -8.615850e-47 |
| Msa0030280 | Msa0437510 | 0.836301 | 1.014206e-56 | -8.615850e-47 |
| Msa0032610 | Msa0437510 | 0.810110 | 1.356708e-50 | -8.615850e-47 |
| Msa0077880 | Msa0437510 | 0.837559 | 4.839674e-57 | -8.615850e-47 |
| Msa0090030 | Msa0437510 | 0.809033 | 2.311203e-50 | -8.615850e-47 |
| Msa0094010 | Msa0437510 | 0.827205 | 1.779544e-54 | -8.615850e-47 |
| Msa0097850 | Msa0437510 | 0.817890 | 2.608030e-52 | -8.615850e-47 |
| Msa0098390 | Msa0437510 | -0.801299 | 9.614707e-49 | -8.615850e-47 |
| Msa0099510 | Msa0437510 | 0.821615 | 3.674322e-53 | -8.615850e-47 |
| Msa0100800 | Msa0437510 | 0.801151 | 1.030905e-48 | -8.615850e-47 |
| Msa0115830 | Msa0437510 | 0.826240 | 3.024649e-54 | -8.615850e-47 |
| Msa0118000 | Msa0437510 | 0.837276 | 5.720205e-57 | -8.615850e-47 |
| Msa0125370 | Msa0437510 | -0.819060 | 1.416314e-52 | -8.615850e-47 |
| Msa0125770 | Msa0437510 | 0.829074 | 6.309046e-55 | -8.615850e-47 |
| Msa0138970 | Msa0437510 | -0.827635 | 1.403442e-54 | -8.615850e-47 |
| Msa0140520 | Msa0437510 | -0.807366 | 5.236010e-50 | -8.615850e-47 |
| Msa0152840 | Msa0437510 | 0.808063 | 3.723449e-50 | -8.615850e-47 |
| Msa0178030 | Msa0437510 | -0.804314 | 2.292612e-49 | -8.615850e-47 |
| Msa0186310 | Msa0437510 | 0.809229 | 2.098170e-50 | -8.615850e-47 |
| Msa0196020 | Msa0437510 | -0.805390 | 1.365995e-49 | -8.615850e-47 |
| Msa0196340 | Msa0437510 | 0.848895 | 4.577681e-60 | -8.615850e-47 |
| Msa0208810 | Msa0437510 | 0.851137 | 1.079265e-60 | -8.615850e-47 |
| Msa0212750 | Msa0437510 | -0.816077 | 6.658372e-52 | -8.615850e-47 |
| Msa0219250 | Msa0437510 | -0.830054 | 3.644579e-55 | -8.615850e-47 |
| Msa0222920 | Msa0437510 | 0.827079 | 1.906688e-54 | -8.615850e-47 |
| Msa0229940 | Msa0437510 | 0.804948 | 1.690862e-49 | -8.615850e-47 |
| Msa0238230 | Msa0437510 | 0.860774 | 1.633935e-63 | -8.615850e-47 |
| Msa0374250 | Msa0437510 | 0.841989 | 3.400890e-58 | -8.615850e-47 |
| Msa0377530 | Msa0437510 | 0.807510 | 4.879980e-50 | -8.615850e-47 |
| Msa0426810 | Msa0437510 | 0.803010 | 4.274750e-49 | -8.615850e-47 |
| Msa0431770 | Msa0437510 | 0.831229 | 1.879292e-55 | -8.615850e-47 |
| Msa0437510 | Msa0462220 | 0.801912 | 7.198659e-49 | -8.615850e-47 |
| Msa0437510 | Msa0465920 | 0.813113 | 3.017013e-51 | -8.615850e-47 |
| Msa0437510 | Msa0469790 | 0.843459 | 1.383055e-58 | -8.615850e-47 |
| Msa0437510 | Msa0469820 | 0.827092 | 1.893716e-54 | -8.615850e-47 |
| Msa0437510 | Msa0469910 | -0.824968 | 6.052624e-54 | -8.615850e-47 |
| Msa0437510 | Msa0474590 | 0.812476 | 4.159206e-51 | -8.615850e-47 |
| Msa0437510 | Msa0517490 | 0.814690 | 1.354843e-51 | -8.615850e-47 |
| Msa0437510 | Msa0519130 | 0.804998 | 1.650479e-49 | -8.615850e-47 |
| Msa0437510 | Msa0521310 | 0.800501 | 1.399384e-48 | -8.615850e-47 |
| Msa0437510 | Msa0527910 | 0.810940 | 8.977706e-51 | -8.615850e-47 |
| Msa0437510 | Msa0536790 | 0.812494 | 4.120998e-51 | -8.615850e-47 |
| Msa0437510 | Msa0542160 | 0.825641 | 4.195051e-54 | -8.615850e-47 |
| Msa0437510 | Msa0578090 | 0.867836 | 1.020369e-65 | -8.615850e-47 |
| Msa0437510 | Msa0586850 | 0.865632 | 5.128137e-65 | -8.615850e-47 |
| Msa0437510 | Msa0610500 | 0.800010 | 1.761161e-48 | -8.615850e-47 |
| Msa0437510 | Msa0619180 | 0.818635 | 1.768885e-52 | -8.615850e-47 |
| Msa0437510 | Msa0625790 | 0.805486 | 1.304059e-49 | -8.615850e-47 |
| Msa0437510 | Msa0626680 | 0.856705 | 2.686284e-62 | -8.615850e-47 |
| Msa0437510 | Msa0633760 | 0.840544 | 8.156554e-58 | -8.615850e-47 |
| Msa0437510 | Msa0648520 | 0.821756 | 3.408974e-53 | -8.615850e-47 |
| Msa0437510 | Msa0651150 | 0.821226 | 4.518619e-53 | -8.615850e-47 |
| Msa0437510 | Msa0664760 | 0.873009 | 2.049303e-67 | -8.615850e-47 |
| Msa0437510 | Msa0691050 | 0.817690 | 2.893510e-52 | -8.615850e-47 |
| Msa0437510 | Msa0704800 | 0.809921 | 1.490185e-50 | -8.615850e-47 |
| Msa0437510 | Msa0711490 | 0.803228 | 3.853998e-49 | -8.615850e-47 |
| Msa0437510 | Msa0743680 | 0.838044 | 3.631882e-57 | -8.615850e-47 |
| Msa0437510 | Msa0744090 | 0.810018 | 1.419951e-50 | -8.615850e-47 |
| Msa0437510 | Msa0753770 | 0.819876 | 9.224501e-53 | -8.615850e-47 |
| Msa0437510 | Msa0754720 | -0.808056 | 3.735009e-50 | -8.615850e-47 |
| Msa0437510 | Msa0758230 | 0.813415 | 2.589966e-51 | -8.615850e-47 |
| Msa0437510 | Msa0780900 | 0.809858 | 1.536737e-50 | -8.615850e-47 |
| Msa0437510 | Msa0784620 | 0.825238 | 5.226790e-54 | -8.615850e-47 |
| Msa0437510 | Msa0824730 | 0.833732 | 4.504044e-56 | -8.615850e-47 |
| Msa0437510 | Msa0825280 | 0.816237 | 6.134203e-52 | -8.615850e-47 |
| Msa0437510 | Msa0837650 | 0.804628 | 1.972149e-49 | -8.615850e-47 |
| Msa0437510 | Msa0851470 | 0.804445 | 2.152400e-49 | -8.615850e-47 |
| Msa0437510 | Msa0863800 | 0.818130 | 2.301398e-52 | -8.615850e-47 |
| Msa0437510 | Msa0866120 | 0.800008 | 1.763038e-48 | -8.615850e-47 |
| Msa0437510 | Msa0947530 | -0.856487 | 3.112089e-62 | -8.615850e-47 |
| Msa0437510 | Msa0977310 | 0.804789 | 1.825111e-49 | -8.615850e-47 |
| Msa0437510 | Msa1000930 | 0.808877 | 2.495659e-50 | -8.615850e-47 |
| Msa0437510 | Msa1033660 | 0.807186 | 5.715735e-50 | -8.615850e-47 |
| Msa0437510 | Msa1038210 | -0.808466 | 3.054583e-50 | -8.615850e-47 |
| Msa0437510 | Msa1069660 | -0.806886 | 6.614367e-50 | -8.615850e-47 |
| Msa0437510 | Msa1113880 | 0.803717 | 3.051102e-49 | -8.615850e-47 |
| Msa0437510 | Msa1118940 | 0.807644 | 4.570446e-50 | -8.615850e-47 |
| Msa0437510 | Msa1126120 | -0.806613 | 7.554421e-50 | -8.615850e-47 |
| Msa0437510 | Msa1162830 | 0.802094 | 6.603198e-49 | -8.615850e-47 |
| Msa0437510 | Msa1173900 | 0.809980 | 1.446989e-50 | -8.615850e-47 |
| Msa0437510 | Msa1178370 | 0.838925 | 2.152461e-57 | -8.615850e-47 |
| Msa0437510 | Msa1198880 | 0.828003 | 1.144592e-54 | -8.615850e-47 |
| Msa0437510 | Msa1208890 | -0.812440 | 4.235388e-51 | -8.615850e-47 |
| Msa0437510 | Msa1211050 | -0.811060 | 8.455476e-51 | -8.615850e-47 |
| Msa0437510 | Msa1223330 | 0.820859 | 5.488735e-53 | -8.615850e-47 |
| Msa0437510 | Msa1236070 | -0.808733 | 2.678921e-50 | -8.615850e-47 |
| Msa0437510 | Msa1253810 | 0.842151 | 3.080462e-58 | -8.615850e-47 |
| Msa0437510 | Msa1259070 | -0.802154 | 6.419257e-49 | -8.615850e-47 |
| Msa0437510 | Msa1262960 | 0.828611 | 8.165083e-55 | -8.615850e-47 |
| Msa0437510 | Msa1269580 | -0.800341 | 1.507985e-48 | -8.615850e-47 |
| Msa0437510 | Msa1293480 | -0.804021 | 2.638731e-49 | -8.615850e-47 |
| Msa0437510 | Msa1294960 | 0.809466 | 1.866608e-50 | -8.615850e-47 |
| Msa0437510 | Msa1302060 | 0.828897 | 6.963786e-55 | -8.615850e-47 |
| Msa0437510 | Msa1317810 | -0.806341 | 8.620957e-50 | -8.615850e-47 |
| Msa0437510 | Msa1318620 | 0.810795 | 9.652665e-51 | -8.615850e-47 |
| Msa0437510 | Msa1333970 | 0.806398 | 8.386073e-50 | -8.615850e-47 |
| Msa0437510 | Msa1337730 | 0.806293 | 8.824357e-50 | -8.615850e-47 |
| Msa0437510 | Msa1340040 | -0.824719 | 6.929676e-54 | -8.615850e-47 |
| Msa0437510 | Msa1360890 | -0.841710 | 4.028981e-58 | -8.615850e-47 |
| Msa0437510 | Msa1363700 | 0.802795 | 4.735125e-49 | -8.615850e-47 |
| Msa0437510 | Msa1370620 | 0.814482 | 1.506104e-51 | -8.615850e-47 |
| Msa0437510 | Msa1390120 | 0.807429 | 5.076173e-50 | -8.615850e-47 |
| Msa0437510 | Msa1395530 | 0.803210 | 3.886658e-49 | -8.615850e-47 |
| Msa0437510 | Msa1398860 | 0.811192 | 7.918148e-51 | -8.615850e-47 |
| Msa0437510 | Msa1400610 | -0.813297 | 2.748228e-51 | -8.615850e-47 |
| Msa0437510 | Msa1411400 | -0.807107 | 5.941968e-50 | -8.615850e-47 |
| Msa0437510 | Msa1422910 | 0.808225 | 3.439258e-50 | -8.615850e-47 |
| Msa0437510 | Msa1442220 | -0.832881 | 7.340344e-56 | -8.615850e-47 |
| Msa0437510 | Msa1447110 | 0.904038 | 1.862048e-79 | -8.615850e-47 |
| Msa0437510 | Msa1449910 | 0.990842 | 1.360017e-184 | -8.615850e-47 |
| Msa0437510 | Msa1466090 | 0.810163 | 1.321632e-50 | -8.615850e-47 |
| Msa0252240 | Msa0437510 | 0.802965 | 4.367182e-49 | -8.615850e-47 |
| Msa0258880 | Msa0437510 | -0.826606 | 2.473350e-54 | -8.615850e-47 |
| Msa0275400 | Msa0437510 | -0.825654 | 4.166506e-54 | -8.615850e-47 |
| Msa0288730 | Msa0437510 | 0.814630 | 1.396717e-51 | -8.615850e-47 |
| Msa0295000 | Msa0437510 | -0.829936 | 3.893382e-55 | -8.615850e-47 |
| Msa0298950 | Msa0437510 | 0.813961 | 1.963062e-51 | -8.615850e-47 |
| Msa0308220 | Msa0437510 | 0.803196 | 3.912511e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437510 | MtrunA17_Chr1g0210761 | 97.619 | 210 | 5 | 0 | 1 | 210 | 1 | 210 | 1.78e-150 | 416 |
| Msa0437510 | MtrunA17_Chr1g0178711 | 57.353 | 204 | 76 | 1 | 17 | 209 | 20 | 223 | 3.20e-83 | 246 |
| Msa0437510 | MtrunA17_Chr1g0193671 | 42.381 | 210 | 114 | 3 | 7 | 209 | 7 | 216 | 1.40e-53 | 171 |
| Msa0437510 | MtrunA17_Chr7g0271211 | 44.898 | 196 | 99 | 4 | 22 | 209 | 19 | 213 | 3.13e-52 | 167 |
| Msa0437510 | MtrunA17_Chr1g0193421 | 43.434 | 198 | 105 | 3 | 19 | 209 | 20 | 217 | 2.92e-51 | 165 |
| Msa0437510 | MtrunA17_Chr6g0449751 | 44.186 | 215 | 104 | 6 | 7 | 207 | 3 | 215 | 1.59e-48 | 158 |
| Msa0437510 | MtrunA17_Chr6g0449731 | 44.444 | 216 | 105 | 6 | 5 | 207 | 2 | 215 | 3.82e-48 | 157 |
| Msa0437510 | MtrunA17_Chr6g0449761 | 44.186 | 215 | 107 | 5 | 5 | 207 | 2 | 215 | 7.78e-48 | 157 |
| Msa0437510 | MtrunA17_Chr6g0449771 | 44.444 | 216 | 105 | 6 | 5 | 207 | 2 | 215 | 1.12e-47 | 155 |
| Msa0437510 | MtrunA17_Chr1g0189841 | 44.554 | 202 | 97 | 6 | 19 | 207 | 18 | 217 | 1.16e-47 | 155 |
| Msa0437510 | MtrunA17_Chr4g0007051 | 42.512 | 207 | 91 | 7 | 19 | 206 | 18 | 215 | 3.03e-45 | 149 |
| Msa0437510 | MtrunA17_Chr4g0007031 | 42.584 | 209 | 88 | 7 | 19 | 206 | 18 | 215 | 3.10e-45 | 149 |
| Msa0437510 | MtrunA17_Chr5g0419971 | 42.584 | 209 | 88 | 7 | 19 | 206 | 18 | 215 | 3.10e-45 | 149 |
| Msa0437510 | MtrunA17_Chr5g0419981 | 42.584 | 209 | 88 | 7 | 19 | 206 | 18 | 215 | 3.10e-45 | 149 |
| Msa0437510 | MtrunA17_Chr4g0007041 | 41.071 | 224 | 95 | 8 | 9 | 206 | 3 | 215 | 1.01e-44 | 148 |
| Msa0437510 | MtrunA17_Chr2g0285871 | 42.584 | 209 | 88 | 7 | 19 | 206 | 18 | 215 | 1.84e-44 | 147 |
| Msa0437510 | MtrunA17_Chr1g0156131 | 40.099 | 202 | 114 | 4 | 11 | 207 | 10 | 209 | 8.17e-44 | 145 |
| Msa0437510 | MtrunA17_Chr5g0414971 | 42.268 | 194 | 104 | 4 | 22 | 207 | 26 | 219 | 2.37e-43 | 145 |
| Msa0437510 | MtrunA17_Chr2g0292831 | 41.538 | 195 | 106 | 5 | 20 | 207 | 19 | 212 | 4.97e-43 | 144 |
| Msa0437510 | MtrunA17_Chr2g0292901 | 42.021 | 188 | 101 | 5 | 27 | 207 | 27 | 213 | 8.87e-43 | 143 |
| Msa0437510 | MtrunA17_Chr2g0300581 | 37.255 | 204 | 119 | 3 | 9 | 205 | 3 | 204 | 1.41e-38 | 132 |
| Msa0437510 | MtrunA17_Chr2g0300591 | 37.438 | 203 | 118 | 3 | 9 | 204 | 3 | 203 | 1.59e-38 | 132 |
| Msa0437510 | MtrunA17_Chr6g0449781 | 40.196 | 204 | 100 | 6 | 19 | 207 | 18 | 214 | 2.58e-38 | 132 |
| Msa0437510 | MtrunA17_Chr2g0292861 | 42.697 | 178 | 84 | 5 | 42 | 207 | 7 | 178 | 4.12e-38 | 130 |
| Msa0437510 | MtrunA17_Chr2g0300561 | 37.313 | 201 | 121 | 2 | 9 | 204 | 3 | 203 | 1.14e-37 | 130 |
| Msa0437510 | MtrunA17_Chr2g0292841 | 42.442 | 172 | 93 | 4 | 42 | 207 | 7 | 178 | 1.35e-36 | 126 |
| Msa0437510 | MtrunA17_Chr8g0343911 | 36.538 | 208 | 114 | 5 | 10 | 205 | 1 | 202 | 3.29e-36 | 126 |
| Msa0437510 | MtrunA17_Chr2g0313961 | 34.783 | 207 | 124 | 5 | 8 | 207 | 3 | 205 | 6.31e-35 | 122 |
| Msa0437510 | MtrunA17_Chr8g0344041 | 33.014 | 209 | 131 | 5 | 5 | 207 | 4 | 209 | 1.99e-34 | 121 |
| Msa0437510 | MtrunA17_Chr3g0084531 | 34.300 | 207 | 125 | 5 | 8 | 207 | 3 | 205 | 3.37e-34 | 120 |
| Msa0437510 | MtrunA17_Chr2g0297231 | 33.981 | 206 | 127 | 4 | 8 | 207 | 3 | 205 | 4.21e-34 | 120 |
| Msa0437510 | MtrunA17_Chr8g0343921 | 32.850 | 207 | 128 | 5 | 8 | 207 | 1 | 203 | 7.24e-34 | 120 |
| Msa0437510 | MtrunA17_Chr8g0343934 | 35.437 | 206 | 124 | 6 | 8 | 207 | 3 | 205 | 8.87e-34 | 120 |
| Msa0437510 | MtrunA17_Chr2g0321601 | 34.286 | 210 | 112 | 5 | 12 | 208 | 8 | 204 | 9.79e-34 | 119 |
| Msa0437510 | MtrunA17_Chr6g0449791 | 39.109 | 202 | 108 | 5 | 7 | 197 | 9 | 206 | 2.39e-33 | 119 |
| Msa0437510 | MtrunA17_Chr3g0130241 | 41.176 | 170 | 88 | 2 | 15 | 172 | 75 | 244 | 4.16e-33 | 120 |
| Msa0437510 | MtrunA17_Chr2g0297241 | 33.495 | 206 | 128 | 4 | 8 | 207 | 3 | 205 | 8.53e-33 | 117 |
| Msa0437510 | MtrunA17_Chr3g0084521 | 35.266 | 207 | 119 | 6 | 8 | 207 | 6 | 204 | 2.23e-32 | 116 |
| Msa0437510 | MtrunA17_Chr2g0302171 | 36.517 | 178 | 106 | 4 | 33 | 207 | 32 | 205 | 2.78e-32 | 116 |
| Msa0437510 | MtrunA17_Chr8g0343954 | 37.433 | 187 | 108 | 6 | 27 | 207 | 22 | 205 | 4.54e-32 | 115 |
| Msa0437510 | MtrunA17_Chr8g0335851 | 34.896 | 192 | 117 | 2 | 17 | 200 | 20 | 211 | 6.06e-32 | 115 |
| Msa0437510 | MtrunA17_Chr3g0084511 | 35.749 | 207 | 118 | 7 | 8 | 207 | 6 | 204 | 1.02e-31 | 114 |
| Msa0437510 | MtrunA17_Chr2g0301611 | 32.850 | 207 | 128 | 5 | 8 | 207 | 3 | 205 | 3.83e-31 | 113 |
| Msa0437510 | MtrunA17_Chr4g0003361 | 33.163 | 196 | 122 | 4 | 16 | 207 | 11 | 201 | 5.37e-31 | 112 |
| Msa0437510 | MtrunA17_Chr8g0343961 | 33.990 | 203 | 125 | 5 | 11 | 207 | 6 | 205 | 9.41e-31 | 112 |
| Msa0437510 | MtrunA17_Chr4g0026191 | 33.019 | 212 | 122 | 5 | 5 | 208 | 7 | 206 | 1.54e-30 | 111 |
| Msa0437510 | MtrunA17_Chr2g0321581 | 31.731 | 208 | 120 | 5 | 12 | 208 | 9 | 205 | 5.10e-30 | 110 |
| Msa0437510 | MtrunA17_Chr2g0321591 | 31.731 | 208 | 120 | 5 | 12 | 208 | 9 | 205 | 5.49e-30 | 110 |
| Msa0437510 | MtrunA17_Chr8g0344021 | 33.173 | 208 | 128 | 4 | 8 | 207 | 4 | 208 | 1.01e-29 | 109 |
| Msa0437510 | MtrunA17_Chr4g0026201 | 37.500 | 160 | 96 | 2 | 53 | 208 | 47 | 206 | 1.05e-29 | 109 |
| Msa0437510 | MtrunA17_Chr2g0302541 | 34.043 | 188 | 113 | 5 | 27 | 207 | 22 | 205 | 6.07e-28 | 104 |
| Msa0437510 | MtrunA17_Chr3g0115141 | 34.595 | 185 | 110 | 5 | 29 | 207 | 27 | 206 | 7.54e-28 | 104 |
| Msa0437510 | MtrunA17_Chr4g0012651 | 32.979 | 188 | 115 | 4 | 27 | 207 | 22 | 205 | 3.20e-27 | 103 |
| Msa0437510 | MtrunA17_Chr7g0217811 | 31.351 | 185 | 122 | 2 | 27 | 207 | 22 | 205 | 5.80e-27 | 102 |
| Msa0437510 | MtrunA17_Chr5g0411961 | 30.097 | 206 | 135 | 4 | 8 | 207 | 3 | 205 | 1.10e-26 | 101 |
| Msa0437510 | MtrunA17_Chr8g0344051 | 30.097 | 206 | 137 | 3 | 8 | 207 | 4 | 208 | 1.23e-26 | 101 |
| Msa0437510 | MtrunA17_Chr2g0292911 | 45.299 | 117 | 61 | 2 | 42 | 155 | 7 | 123 | 1.24e-26 | 99.4 |
| Msa0437510 | MtrunA17_Chr8g0344031 | 32.381 | 210 | 126 | 8 | 8 | 207 | 4 | 207 | 2.45e-26 | 100 |
| Msa0437510 | MtrunA17_Chr2g0286171 | 31.720 | 186 | 114 | 7 | 29 | 207 | 29 | 208 | 6.46e-24 | 94.4 |
| Msa0437510 | MtrunA17_Chr3g0084551 | 29.064 | 203 | 129 | 5 | 8 | 204 | 3 | 196 | 5.87e-21 | 87.0 |
| Msa0437510 | MtrunA17_Chr3g0084501 | 34.906 | 106 | 59 | 4 | 8 | 106 | 3 | 105 | 4.19e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437510 | AT3G10080.1 | 60.194 | 206 | 70 | 3 | 13 | 209 | 19 | 221 | 2.19e-86 | 254 |
| Msa0437510 | AT3G10080.2 | 60.194 | 206 | 70 | 3 | 13 | 209 | 90 | 292 | 8.00e-86 | 256 |
| Msa0437510 | AT1G02335.1 | 42.791 | 215 | 115 | 4 | 1 | 207 | 1 | 215 | 2.84e-56 | 178 |
| Msa0437510 | AT3G04200.1 | 45.540 | 213 | 103 | 5 | 8 | 209 | 14 | 224 | 2.01e-54 | 173 |
| Msa0437510 | AT1G18980.1 | 45.192 | 208 | 105 | 4 | 7 | 207 | 13 | 218 | 8.80e-53 | 169 |
| Msa0437510 | AT1G18970.1 | 42.788 | 208 | 110 | 4 | 7 | 207 | 13 | 218 | 4.44e-52 | 167 |
| Msa0437510 | AT5G26700.1 | 40.865 | 208 | 116 | 4 | 7 | 209 | 6 | 211 | 5.87e-52 | 167 |
| Msa0437510 | AT5G39160.3 | 41.346 | 208 | 112 | 5 | 7 | 207 | 11 | 215 | 5.19e-51 | 164 |
| Msa0437510 | AT3G62020.1 | 43.204 | 206 | 109 | 4 | 12 | 209 | 12 | 217 | 5.27e-51 | 164 |
| Msa0437510 | AT5G39160.1 | 40.845 | 213 | 110 | 6 | 7 | 207 | 11 | 219 | 6.23e-51 | 164 |
| Msa0437510 | AT3G05950.1 | 44.393 | 214 | 104 | 6 | 7 | 208 | 12 | 222 | 9.50e-51 | 164 |
| Msa0437510 | AT5G39130.1 | 40.376 | 213 | 111 | 6 | 7 | 207 | 11 | 219 | 1.03e-50 | 164 |
| Msa0437510 | AT5G39190.1 | 40.845 | 213 | 110 | 6 | 7 | 207 | 11 | 219 | 1.13e-50 | 164 |
| Msa0437510 | AT5G38960.1 | 44.059 | 202 | 99 | 5 | 19 | 207 | 22 | 222 | 3.19e-50 | 162 |
| Msa0437510 | AT1G09560.1 | 44.103 | 195 | 102 | 3 | 22 | 209 | 23 | 217 | 5.69e-50 | 162 |
| Msa0437510 | AT3G05930.1 | 38.710 | 217 | 125 | 3 | 1 | 209 | 1 | 217 | 6.32e-49 | 159 |
| Msa0437510 | AT5G39110.1 | 41.014 | 217 | 113 | 6 | 5 | 207 | 5 | 220 | 2.70e-48 | 157 |
| Msa0437510 | AT5G38940.1 | 42.424 | 198 | 101 | 5 | 22 | 207 | 25 | 221 | 1.04e-47 | 156 |
| Msa0437510 | AT5G38940.2 | 42.424 | 198 | 101 | 5 | 22 | 207 | 49 | 245 | 1.55e-47 | 156 |
| Msa0437510 | AT5G39150.1 | 40.183 | 219 | 105 | 6 | 8 | 207 | 8 | 219 | 1.58e-47 | 155 |
| Msa0437510 | AT5G39180.1 | 40.183 | 219 | 105 | 6 | 8 | 207 | 8 | 219 | 2.42e-47 | 155 |
| Msa0437510 | AT5G38910.1 | 41.860 | 215 | 110 | 6 | 6 | 207 | 7 | 219 | 2.71e-47 | 155 |
| Msa0437510 | AT3G62020.2 | 45.699 | 186 | 95 | 4 | 28 | 209 | 5 | 188 | 3.30e-47 | 154 |
| Msa0437510 | AT5G39120.1 | 40.000 | 225 | 106 | 7 | 5 | 207 | 2 | 219 | 4.48e-47 | 154 |
| Msa0437510 | AT5G39160.2 | 39.130 | 207 | 100 | 6 | 7 | 207 | 11 | 197 | 1.65e-45 | 150 |
| Msa0437510 | AT3G04180.1 | 40.000 | 200 | 109 | 4 | 20 | 208 | 23 | 222 | 2.30e-45 | 150 |
| Msa0437510 | AT5G39190.2 | 39.130 | 207 | 100 | 6 | 7 | 207 | 11 | 197 | 2.75e-45 | 149 |
| Msa0437510 | AT3G04170.1 | 41.784 | 213 | 110 | 5 | 8 | 210 | 13 | 221 | 2.95e-45 | 150 |
| Msa0437510 | AT3G04150.1 | 40.094 | 212 | 114 | 5 | 8 | 208 | 13 | 222 | 7.33e-45 | 149 |
| Msa0437510 | AT4G14630.1 | 39.500 | 200 | 107 | 5 | 21 | 207 | 24 | 222 | 1.77e-44 | 148 |
| Msa0437510 | AT3G04190.1 | 40.796 | 201 | 106 | 5 | 20 | 208 | 23 | 222 | 4.90e-44 | 147 |
| Msa0437510 | AT5G38930.1 | 40.201 | 199 | 106 | 5 | 21 | 207 | 24 | 221 | 1.36e-43 | 145 |
| Msa0437510 | AT3G04150.2 | 38.667 | 225 | 112 | 6 | 8 | 208 | 13 | 235 | 3.18e-43 | 145 |
| Msa0437510 | AT5G20630.1 | 39.344 | 183 | 106 | 2 | 27 | 204 | 22 | 204 | 3.40e-40 | 137 |
| Msa0437510 | AT1G10460.1 | 37.186 | 199 | 111 | 5 | 22 | 207 | 18 | 215 | 2.09e-39 | 135 |
| Msa0437510 | AT5G61750.1 | 39.785 | 186 | 92 | 5 | 9 | 181 | 5 | 183 | 1.51e-34 | 122 |
| Msa0437510 | AT1G72610.1 | 37.838 | 185 | 106 | 3 | 27 | 204 | 19 | 201 | 1.23e-33 | 120 |
| Msa0437510 | AT1G74820.1 | 31.390 | 223 | 134 | 6 | 2 | 208 | 7 | 226 | 7.63e-33 | 118 |
| Msa0437510 | AT5G38910.2 | 35.211 | 213 | 90 | 6 | 6 | 207 | 7 | 182 | 1.55e-30 | 111 |
| Msa0437510 | AT5G38950.1 | 49.206 | 63 | 30 | 1 | 138 | 198 | 2 | 64 | 2.53e-12 | 61.6 |
Find 21 sgRNAs with CRISPR-Local
Find 42 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGATTAAAGATGAGCTTT+TGG | 0.232327 | 3_3:+1288304 | Msa0437510:CDS |
| GAATTTGTTATCTTCTGATT+TGG | 0.267937 | 3_3:-1287856 | None:intergenic |
| CCAGTTTCTTTGAAGTTTCC+TGG | 0.322734 | 3_3:-1287939 | None:intergenic |
| TTCTGATCCGGATCCTGTTA+TGG | 0.323739 | 3_3:+1287821 | Msa0437510:CDS |
| CCAGGAAACTTCAAAGAAAC+TGG | 0.339479 | 3_3:+1287939 | Msa0437510:CDS |
| GTGAATTCAAATGTGTTTCC+AGG | 0.358885 | 3_3:+1287978 | Msa0437510:CDS |
| TTTGGAGAAAGGTGAGGTTA+TGG | 0.393881 | 3_3:+1288160 | Msa0437510:CDS |
| TGAAAATGCACAAGTCCTCT+TGG | 0.414763 | 3_3:-1288188 | None:intergenic |
| GCTATGCAGTAATCCATAAC+AGG | 0.434646 | 3_3:-1287834 | None:intergenic |
| ATAGCAACTTCTGTTGCTCT+TGG | 0.444865 | 3_3:-1288074 | None:intergenic |
| CAGTAATCCATAACAGGATC+CGG | 0.469062 | 3_3:-1287828 | None:intergenic |
| TTTCCAGGTTTAAACACTCT+TGG | 0.469660 | 3_3:+1287993 | Msa0437510:CDS |
| CAGCAATGATGAAACACATA+AGG | 0.504374 | 3_3:-1287791 | None:intergenic |
| ACACATAAGGACTAAAAGAA+TGG | 0.521199 | 3_3:-1287778 | None:intergenic |
| AGAAGTTGCTATTGTGTTGG+AGG | 0.523101 | 3_3:+1288085 | Msa0437510:CDS |
| AACAGAAGTTGCTATTGTGT+TGG | 0.541553 | 3_3:+1288082 | Msa0437510:CDS |
| GAAGTTGCTATTGTGTTGGA+GGG | 0.567803 | 3_3:+1288086 | Msa0437510:CDS |
| ACTCCAAGAGTGTTTAAACC+TGG | 0.567991 | 3_3:-1287996 | None:intergenic |
| GAAATCTTCAACTGTTGCTG+TGG | 0.571728 | 3_3:-1287895 | None:intergenic |
| AGCTTTCTAAGTTAAAGAAG+AGG | 0.576087 | 3_3:+1288354 | Msa0437510:CDS |
| GTTGCTCTTGGATGAAAGTG+AGG | 0.618955 | 3_3:-1288062 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAATTTGTTATCTTCTGATT+TGG | - | chr3_3:1287859-1287878 | None:intergenic | 25.0% |
| !! | CAAGATTTTTGCTAAAGTTT+TGG | + | chr3_3:1288142-1288161 | Msa0437510:CDS | 25.0% |
| !!! | AAAATTCCAAATGCTGTTTT+TGG | + | chr3_3:1288278-1288297 | Msa0437510:CDS | 25.0% |
| ACACATAAGGACTAAAAGAA+TGG | - | chr3_3:1287781-1287800 | None:intergenic | 30.0% | |
| !!! | GTTGAAGATTTCACTTTTTC+TGG | + | chr3_3:1287906-1287925 | Msa0437510:CDS | 30.0% |
| !! | TTTTCTGGTATAAAACTACC+AGG | + | chr3_3:1287921-1287940 | Msa0437510:CDS | 30.0% |
| ! | AGAAACTGGATTTTCTTCAA+TGG | + | chr3_3:1287953-1287972 | Msa0437510:CDS | 30.0% |
| ! | GAAACTGGATTTTCTTCAAT+GGG | + | chr3_3:1287954-1287973 | Msa0437510:CDS | 30.0% |
| TTGGAGGGAAAAATTTATTC+AGG | + | chr3_3:1288101-1288120 | Msa0437510:CDS | 30.0% | |
| !!! | TTTGCTAAAGTTTTGGAGAA+AGG | + | chr3_3:1288149-1288168 | Msa0437510:CDS | 30.0% |
| AAACTACCAAAAATAGTAGC+AGG | - | chr3_3:1288233-1288252 | None:intergenic | 30.0% | |
| !! | AGTTTTGATAGTCAAAATCC+TGG | + | chr3_3:1288248-1288267 | Msa0437510:CDS | 30.0% |
| !! | TTTGGAATTTTCATCAAACC+AGG | - | chr3_3:1288269-1288288 | None:intergenic | 30.0% |
| ! | TGAGATTAAAGATGAGCTTT+TGG | + | chr3_3:1288304-1288323 | Msa0437510:CDS | 30.0% |
| ! | AGCTTTTGGACTTAATTCTA+AGG | + | chr3_3:1288331-1288350 | Msa0437510:CDS | 30.0% |
| AGCTTTCTAAGTTAAAGAAG+AGG | + | chr3_3:1288354-1288373 | Msa0437510:CDS | 30.0% | |
| CAGCAATGATGAAACACATA+AGG | - | chr3_3:1287794-1287813 | None:intergenic | 35.0% | |
| GTGAATTCAAATGTGTTTCC+AGG | + | chr3_3:1287978-1287997 | Msa0437510:CDS | 35.0% | |
| TTTCCAGGTTTAAACACTCT+TGG | + | chr3_3:1287993-1288012 | Msa0437510:CDS | 35.0% | |
| !! | GTTAGAGCAGATTTTGATGT+TGG | + | chr3_3:1288026-1288045 | Msa0437510:CDS | 35.0% |
| ! | AACAGAAGTTGCTATTGTGT+TGG | + | chr3_3:1288082-1288101 | Msa0437510:CDS | 35.0% |
| !!! | TAAAGTTTTGGAGAAAGGTG+AGG | + | chr3_3:1288154-1288173 | Msa0437510:CDS | 35.0% |
| ! | GTGCATTTTCAGATGAATGT+TGG | + | chr3_3:1288200-1288219 | Msa0437510:CDS | 35.0% |
| ! | GATGTTCCTGCTACTATTTT+TGG | + | chr3_3:1288224-1288243 | Msa0437510:CDS | 35.0% |
| TCAGATCCAAAAACAGCATT+TGG | - | chr3_3:1288287-1288306 | None:intergenic | 35.0% | |
| !! | GAGCTTTTGGAAAAAGCTTT+TGG | + | chr3_3:1288317-1288336 | Msa0437510:CDS | 35.0% |
| !!! | TGCTGCTTTTTGTTCTGATC+CGG | + | chr3_3:1287809-1287828 | Msa0437510:CDS | 40.0% |
| CAGTAATCCATAACAGGATC+CGG | - | chr3_3:1287831-1287850 | None:intergenic | 40.0% | |
| GCTATGCAGTAATCCATAAC+AGG | - | chr3_3:1287837-1287856 | None:intergenic | 40.0% | |
| GAAATCTTCAACTGTTGCTG+TGG | - | chr3_3:1287898-1287917 | None:intergenic | 40.0% | |
| !! | CCAGTTTCTTTGAAGTTTCC+TGG | - | chr3_3:1287942-1287961 | None:intergenic | 40.0% |
| CCAGGAAACTTCAAAGAAAC+TGG | + | chr3_3:1287939-1287958 | Msa0437510:CDS | 40.0% | |
| !! | ACTCCAAGAGTGTTTAAACC+TGG | - | chr3_3:1287999-1288018 | None:intergenic | 40.0% |
| !! | AGAGCAGATTTTGATGTTGG+TGG | + | chr3_3:1288029-1288048 | Msa0437510:CDS | 40.0% |
| ATAGCAACTTCTGTTGCTCT+TGG | - | chr3_3:1288077-1288096 | None:intergenic | 40.0% | |
| ! | AGAAGTTGCTATTGTGTTGG+AGG | + | chr3_3:1288085-1288104 | Msa0437510:CDS | 40.0% |
| ! | GAAGTTGCTATTGTGTTGGA+GGG | + | chr3_3:1288086-1288105 | Msa0437510:CDS | 40.0% |
| TTTGGAGAAAGGTGAGGTTA+TGG | + | chr3_3:1288160-1288179 | Msa0437510:CDS | 40.0% | |
| ! | GAGGTTATGGTTTTTCCAAG+AGG | + | chr3_3:1288173-1288192 | Msa0437510:CDS | 40.0% |
| TGAAAATGCACAAGTCCTCT+TGG | - | chr3_3:1288191-1288210 | None:intergenic | 40.0% | |
| TTCTGATCCGGATCCTGTTA+TGG | + | chr3_3:1287821-1287840 | Msa0437510:CDS | 45.0% | |
| GTTGCTCTTGGATGAAAGTG+AGG | - | chr3_3:1288065-1288084 | None:intergenic | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 1287759 | 1288391 | 1287759 | ID=Msa0437510;Name=Msa0437510 |
| chr3_3 | mRNA | 1287759 | 1288391 | 1287759 | ID=Msa0437510-mRNA-1;Parent=Msa0437510;Name=Msa0437510-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|-1|0|1|-1|1|1|0|210 |
| chr3_3 | exon | 1287759 | 1288391 | 1287759 | ID=Msa0437510-mRNA-1:exon:107;Parent=Msa0437510-mRNA-1 |
| chr3_3 | CDS | 1287759 | 1288391 | 1287759 | ID=Msa0437510-mRNA-1:cds;Parent=Msa0437510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
