AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1030030

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1030030 MtrunA17_Chr7g0250531 99.505 202 1 0 1 202 1 202 4.31e-152 419
Msa1030030 MtrunA17_Chr8g0335471 94.089 203 11 1 1 202 1 203 1.39e-143 398
Msa1030030 MtrunA17_Chr4g0055651 88.614 202 23 0 1 202 1 202 6.76e-138 383
Msa1030030 MtrunA17_Chr2g0276931 77.273 198 44 1 4 200 5 202 3.10e-114 323
Msa1030030 MtrunA17_Chr4g0030911 62.439 205 67 4 4 200 11 213 3.91e-88 258
Msa1030030 MtrunA17_Chr1g0212521 60.488 205 72 3 4 200 11 214 5.52e-87 255
Msa1030030 MtrunA17_Chr1g0182321 61.058 208 70 4 4 202 11 216 9.76e-87 254
Msa1030030 MtrunA17_Chr1g0182301 60.577 208 71 4 4 202 11 216 4.13e-86 253
Msa1030030 MtrunA17_Chr7g0263071 61.058 208 70 4 4 202 11 216 5.38e-86 253
Msa1030030 MtrunA17_Chr2g0327911 54.902 204 81 4 5 200 12 212 2.05e-75 226
Msa1030030 MtrunA17_Chr4g0032201 45.972 211 105 2 1 202 5 215 5.04e-65 199
Msa1030030 MtrunA17_Chr2g0276941 46.667 210 101 2 4 202 11 220 2.55e-62 192
Msa1030030 MtrunA17_Chr6g0458081 47.619 210 96 3 5 201 3 211 3.25e-62 192
Msa1030030 MtrunA17_Chr2g0290891 46.411 209 100 1 5 201 3 211 7.86e-62 191
Msa1030030 MtrunA17_Chr2g0283131 47.393 211 101 1 2 202 7 217 1.23e-61 191
Msa1030030 MtrunA17_Chr8g0384311 49.254 201 97 4 4 200 9 208 1.56e-60 187
Msa1030030 MtrunA17_Chr4g0046261 45.972 211 104 1 2 202 7 217 2.83e-60 187
Msa1030030 MtrunA17_Chr7g0234201 47.549 204 98 1 7 201 12 215 2.97e-60 187
Msa1030030 MtrunA17_Chr2g0315551 46.919 211 102 2 2 202 7 217 4.58e-60 187
Msa1030030 MtrunA17_Chr7g0265001 48.515 202 99 4 5 201 13 214 5.54e-60 186
Msa1030030 MtrunA17_Chr3g0112681 45.283 212 106 3 1 202 5 216 1.36e-59 186
Msa1030030 MtrunA17_Chr4g0040781 45.972 211 104 1 2 202 7 217 1.48e-59 186
Msa1030030 MtrunA17_Chr1g0159481 50.739 203 94 5 4 201 13 214 5.21e-59 184
Msa1030030 MtrunA17_Chr3g0123821 43.868 212 106 2 2 200 10 221 3.34e-58 182
Msa1030030 MtrunA17_Chr2g0325091 45.972 211 105 1 1 202 4 214 1.36e-57 181
Msa1030030 MtrunA17_Chr7g0231131 43.602 211 107 2 2 200 9 219 1.84e-57 180
Msa1030030 MtrunA17_Chr1g0189361 45.283 212 100 3 6 201 12 223 2.36e-57 180
Msa1030030 MtrunA17_Chr8g0381841 50.595 168 83 0 2 169 11 178 6.90e-57 179
Msa1030030 MtrunA17_Chr8g0349711 52.147 163 78 0 7 169 5 167 9.53e-57 178
Msa1030030 MtrunA17_Chr2g0319951 46.445 211 100 3 4 202 9 218 1.26e-56 178
Msa1030030 MtrunA17_Chr1g0174281 48.889 180 91 1 2 181 9 187 2.70e-56 177
Msa1030030 MtrunA17_Chr8g0392931 47.170 212 101 3 1 201 7 218 9.75e-56 176
Msa1030030 MtrunA17_Chr1g0180291 47.761 201 99 5 5 200 11 210 1.80e-55 175
Msa1030030 MtrunA17_Chr3g0130271 47.525 202 100 5 4 200 8 208 2.07e-55 175
Msa1030030 MtrunA17_Chr8g0349681 47.692 195 94 1 5 199 381 567 2.59e-55 184
Msa1030030 MtrunA17_Chr8g0349681 48.214 168 87 0 2 169 169 336 7.87e-51 172
Msa1030030 MtrunA17_Chr8g0349681 49.383 162 82 0 7 168 12 173 6.29e-49 167
Msa1030030 MtrunA17_Chr8g0351861 49.123 171 87 0 6 176 14 184 6.42e-55 174
Msa1030030 MtrunA17_Chr8g0346421 43.434 198 112 0 1 198 19 216 9.94e-55 174
Msa1030030 MtrunA17_Chr1g0197331 48.529 204 101 4 2 201 9 212 1.45e-54 172
Msa1030030 MtrunA17_Chr6g0482721 45.918 196 104 1 1 196 5 198 3.74e-54 172
Msa1030030 MtrunA17_Chr7g0214241 49.133 173 88 0 7 179 14 186 6.17e-54 171
Msa1030030 MtrunA17_Chr7g0275991 43.590 195 108 1 6 198 18 212 1.09e-53 171
Msa1030030 MtrunA17_Chr3g0109721 40.625 192 111 1 10 201 12 200 5.21e-48 155
Msa1030030 MtrunA17_Chr5g0433561 40.104 192 112 1 10 201 12 200 1.32e-46 152
Msa1030030 MtrunA17_Chr8g0382221 38.500 200 113 2 9 201 10 206 5.84e-44 145
Msa1030030 MtrunA17_Chr8g0390561 39.175 194 110 3 10 201 11 198 8.44e-44 145
Msa1030030 MtrunA17_Chr1g0199331 42.236 161 92 1 10 169 33 193 1.44e-42 142
Msa1030030 MtrunA17_Chr3g0123971 42.857 161 92 0 9 169 10 170 3.43e-42 141
Msa1030030 MtrunA17_Chr5g0400131 40.994 161 95 0 9 169 10 170 6.76e-42 140
Msa1030030 MtrunA17_Chr4g0055081 36.683 199 117 2 9 201 10 205 3.40e-41 138
Msa1030030 MtrunA17_Chr2g0331691 37.811 201 114 5 8 200 10 207 1.28e-38 132
Msa1030030 MtrunA17_Chr4g0034871 38.500 200 112 6 8 199 8 204 1.75e-38 131
Msa1030030 MtrunA17_Chr4g0004661 37.811 201 114 5 8 200 64 261 1.07e-37 131
Msa1030030 MtrunA17_Chr6g0466301 35.897 195 113 4 8 190 8 202 6.61e-35 122
Msa1030030 MtrunA17_Chr6g0465491 35.897 195 113 4 8 190 8 202 6.61e-35 122
Msa1030030 MtrunA17_Chr8g0383261 38.554 166 95 3 8 166 12 177 5.70e-34 120
Msa1030030 MtrunA17_Chr1g0201121 37.500 168 98 3 8 168 8 175 9.26e-34 119
Msa1030030 MtrunA17_Chr3g0138101 30.108 186 117 4 9 188 14 192 4.84e-23 92.0
Msa1030030 MtrunA17_Chr3g0138121 30.108 186 117 4 9 188 14 192 4.99e-23 92.0
Msa1030030 MtrunA17_Chr6g0465471 35.099 151 91 3 25 168 7 157 5.09e-23 91.7
Msa1030030 MtrunA17_Chr3g0138111 30.108 186 117 4 9 188 14 192 5.32e-23 92.0
Msa1030030 MtrunA17_Chr6g0466161 35.099 151 91 3 25 168 7 157 5.59e-23 91.7
Msa1030030 MtrunA17_Chr4g0037021 32.934 167 98 6 8 162 6 170 3.72e-22 89.4
Msa1030030 MtrunA17_Chr8g0371501 33.136 169 99 6 8 164 6 172 5.16e-22 89.0
Msa1030030 MtrunA17_Chr6g0486041 31.138 167 101 5 8 162 6 170 8.89e-22 88.6
Msa1030030 MtrunA17_Chr4g0046211 34.959 123 77 3 8 129 6 126 1.31e-21 86.3
Msa1030030 MtrunA17_Chr2g0325101 30.769 169 103 5 8 164 6 172 1.41e-21 87.8
Msa1030030 MtrunA17_Chr3g0117931 30.769 182 107 6 8 177 8 182 2.68e-21 87.4
Msa1030030 MtrunA17_Chr5g0405791 32.544 169 100 6 8 164 6 172 2.82e-21 87.0
Msa1030030 MtrunA17_Chr1g0178291 34.682 173 103 4 5 177 428 590 5.44e-20 87.4
Msa1030030 MtrunA17_Chr6g0466431 35.354 99 55 1 8 106 8 97 5.96e-17 73.2
Msa1030030 MtrunA17_Chr6g0465611 35.354 99 55 1 8 106 8 97 5.96e-17 73.2
Msa1030030 MtrunA17_Chr5g0434561 34.375 160 87 6 9 159 20 170 1.32e-14 68.9
Msa1030030 MtrunA17_Chr5g0401071 30.189 159 101 5 9 162 20 173 8.70e-12 61.2
Msa1030030 MtrunA17_Chr2g0331841 42.373 59 34 0 77 135 2 60 2.20e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1030030 AT1G02130.1 91.626 203 16 1 1 202 1 203 3.04e-141 392
Msa1030030 AT4G17530.1 87.129 202 26 0 1 202 1 202 4.20e-136 379
Msa1030030 AT5G47200.1 87.129 202 26 0 1 202 1 202 4.44e-135 377
Msa1030030 AT3G11730.1 75.369 203 47 2 1 200 1 203 5.58e-112 318
Msa1030030 AT5G59840.1 61.836 207 70 4 4 202 11 216 1.06e-87 257
Msa1030030 AT3G46060.2 60.870 207 72 4 4 202 11 216 2.93e-86 254
Msa1030030 AT3G46060.3 60.870 207 72 4 4 202 11 216 2.93e-86 254
Msa1030030 AT3G46060.1 60.870 207 72 4 4 202 11 216 2.93e-86 254
Msa1030030 AT3G53610.2 59.903 207 74 3 4 202 11 216 4.84e-86 253
Msa1030030 AT3G53610.3 59.903 207 74 3 4 202 11 216 4.84e-86 253
Msa1030030 AT3G53610.1 59.903 207 74 3 4 202 11 216 4.84e-86 253
Msa1030030 AT5G03520.1 61.951 205 70 3 4 201 11 214 1.29e-83 247
Msa1030030 AT3G09900.1 60.870 207 71 3 4 201 11 216 5.79e-83 245
Msa1030030 AT4G17160.1 48.039 204 96 2 5 200 3 204 1.34e-64 198
Msa1030030 AT5G03520.2 58.434 166 61 3 43 201 40 204 2.74e-63 195
Msa1030030 AT1G07410.1 45.238 210 107 2 1 202 5 214 4.29e-63 195
Msa1030030 AT4G35860.1 54.545 165 75 0 5 169 3 167 4.35e-63 195
Msa1030030 AT4G18430.1 49.048 210 97 2 2 201 7 216 1.99e-62 193
Msa1030030 AT4G17170.1 46.890 209 99 2 5 201 3 211 6.86e-62 192
Msa1030030 AT5G60860.1 47.867 211 100 1 2 202 7 217 8.93e-62 191
Msa1030030 AT1G09630.1 46.977 215 96 3 2 202 6 216 1.66e-61 191
Msa1030030 AT1G06400.1 46.190 210 104 2 2 202 7 216 3.10e-61 190
Msa1030030 AT3G46830.1 44.131 213 108 1 1 202 5 217 1.16e-60 189
Msa1030030 AT3G46830.2 44.131 213 108 1 1 202 5 217 1.16e-60 189
Msa1030030 AT3G07410.1 52.571 175 83 0 6 180 10 184 1.85e-60 188
Msa1030030 AT5G47520.1 47.143 210 98 2 6 202 12 221 3.64e-60 187
Msa1030030 AT3G15060.1 46.919 211 102 1 2 202 7 217 4.86e-60 187
Msa1030030 AT5G45750.1 47.596 208 100 2 4 202 9 216 1.01e-59 186
Msa1030030 AT1G16920.1 47.115 208 101 3 4 202 9 216 1.92e-59 186
Msa1030030 AT5G59150.1 42.254 213 112 1 1 202 5 217 2.87e-59 185
Msa1030030 AT1G28550.1 45.714 210 103 2 4 202 9 218 4.57e-59 185
Msa1030030 AT2G43130.1 46.569 204 101 3 6 201 10 213 5.43e-59 184
Msa1030030 AT2G33870.1 45.714 210 103 2 4 202 9 218 5.45e-59 184
Msa1030030 AT3G12160.1 44.811 212 103 3 2 200 9 219 1.73e-58 183
Msa1030030 AT4G39990.1 45.933 209 101 3 6 202 15 223 2.58e-58 183
Msa1030030 AT1G05810.1 46.154 208 101 2 6 202 10 217 2.61e-58 183
Msa1030030 AT5G47960.1 52.663 169 80 0 1 169 8 176 3.95e-58 182
Msa1030030 AT4G18800.1 47.087 206 102 2 4 202 9 214 4.20e-58 182
Msa1030030 AT1G05810.2 46.154 208 101 2 6 202 56 263 5.69e-58 183
Msa1030030 AT5G65270.1 44.340 212 103 3 6 202 15 226 1.84e-57 181
Msa1030030 AT1G43890.3 56.805 169 70 3 3 169 8 175 2.00e-57 180
Msa1030030 AT1G43890.1 56.805 169 70 3 3 169 8 175 2.00e-57 180
Msa1030030 AT1G43890.2 56.805 169 70 3 3 169 8 175 2.00e-57 180
Msa1030030 AT2G31680.1 49.714 175 88 0 6 180 10 184 6.46e-57 179
Msa1030030 AT5G03530.2 49.505 202 96 4 5 201 10 210 2.09e-56 177
Msa1030030 AT5G03530.1 49.505 202 96 4 5 201 10 210 2.09e-56 177
Msa1030030 AT1G73640.1 47.525 202 97 3 4 196 9 210 7.36e-56 177
Msa1030030 AT1G18200.1 50.857 175 86 0 2 176 7 181 3.52e-55 175
Msa1030030 AT4G19640.1 42.188 192 108 1 10 201 12 200 6.88e-49 158
Msa1030030 AT1G01200.1 42.786 201 112 2 1 198 21 221 7.72e-49 159
Msa1030030 AT5G45130.1 41.237 194 107 3 10 201 12 200 5.40e-46 150
Msa1030030 AT3G09910.5 48.066 181 90 4 5 183 10 188 6.18e-46 150
Msa1030030 AT3G09910.4 48.066 181 90 4 5 183 10 188 6.18e-46 150
Msa1030030 AT3G09910.3 45.320 203 99 5 5 202 10 205 8.20e-46 150
Msa1030030 AT3G09910.1 45.320 203 99 5 5 202 10 205 8.20e-46 150
Msa1030030 AT3G09910.2 45.320 203 99 5 5 202 10 205 8.20e-46 150
Msa1030030 AT5G45130.2 40.625 192 107 3 12 201 22 208 2.57e-44 147
Msa1030030 AT2G44610.1 37.879 198 118 1 9 201 10 207 3.21e-43 144
Msa1030030 AT4G35860.2 53.333 120 56 0 50 169 2 121 7.24e-43 142
Msa1030030 AT3G54840.1 44.805 154 84 1 10 162 35 188 1.26e-42 142
Msa1030030 AT3G54840.2 44.805 154 84 1 10 162 35 188 1.53e-42 142
Msa1030030 AT3G54840.3 44.444 153 84 1 11 162 2 154 2.67e-42 140
Msa1030030 AT2G22290.1 36.683 199 118 2 9 201 10 206 4.19e-41 139
Msa1030030 AT4G39890.1 40.741 162 95 1 9 169 10 171 1.02e-40 138
Msa1030030 AT5G10260.1 36.041 197 121 1 9 200 10 206 5.99e-40 135
Msa1030030 AT5G59150.2 39.024 164 89 1 50 202 3 166 1.04e-39 134
Msa1030030 AT5G64990.1 40.964 166 98 0 9 174 8 173 3.08e-39 134
Msa1030030 AT3G18820.1 39.000 200 111 5 8 199 8 204 3.39e-39 134
Msa1030030 AT1G52280.1 37.198 207 119 5 1 199 1 204 9.36e-39 132
Msa1030030 AT3G16100.1 37.500 200 114 5 8 199 8 204 2.75e-38 131
Msa1030030 AT1G49300.2 40.476 168 93 3 8 168 8 175 3.19e-37 129
Msa1030030 AT1G49300.1 40.476 168 93 3 8 168 8 175 3.19e-37 129
Msa1030030 AT5G64990.2 39.306 173 98 1 9 174 8 180 2.05e-36 127
Msa1030030 AT4G19640.3 45.038 131 72 0 10 140 12 142 2.59e-36 126
Msa1030030 AT2G21880.1 39.157 166 94 3 8 166 9 174 3.27e-36 126
Msa1030030 AT4G09720.1 36.683 199 119 3 8 199 8 206 1.14e-35 124
Msa1030030 AT4G19640.2 45.600 125 68 0 10 134 12 136 2.58e-35 122
Msa1030030 AT1G22740.1 34.804 204 111 5 8 199 8 201 7.99e-34 120
Msa1030030 AT4G09720.4 34.804 204 121 3 8 199 8 211 1.33e-33 119
Msa1030030 AT4G09720.3 33.810 210 121 3 8 199 8 217 1.30e-32 117
Msa1030030 AT5G39620.1 38.182 165 95 3 9 166 6 170 3.99e-30 110
Msa1030030 AT2G21880.4 40.146 137 75 3 37 166 13 149 3.47e-28 105
Msa1030030 AT2G21880.3 40.146 137 75 3 37 166 13 149 3.47e-28 105
Msa1030030 AT4G09720.6 37.059 170 100 3 37 199 3 172 5.98e-28 103
Msa1030030 AT4G09720.5 37.059 170 100 3 37 199 3 172 5.98e-28 103
Msa1030030 AT4G09720.2 37.059 170 100 3 37 199 3 172 5.98e-28 103
Msa1030030 AT2G21880.2 34.337 166 94 4 8 166 9 166 2.17e-26 100
Msa1030030 AT4G35020.1 34.320 169 97 6 8 164 6 172 6.26e-24 94.4
Msa1030030 AT4G35020.2 34.320 169 97 6 8 164 6 172 6.26e-24 94.4
Msa1030030 AT4G35020.3 34.320 169 97 6 8 164 6 172 6.26e-24 94.4
Msa1030030 AT5G55080.1 32.121 165 101 3 9 169 14 171 9.68e-24 94.4
Msa1030030 AT2G44690.1 32.934 167 98 5 8 162 18 182 3.81e-23 92.4
Msa1030030 AT3G51300.1 34.132 167 96 6 10 164 8 172 3.88e-23 92.0
Msa1030030 AT5G55190.1 29.891 184 120 4 9 188 14 192 1.49e-22 91.3
Msa1030030 AT2G17800.2 33.728 169 98 6 8 164 6 172 1.64e-22 90.5
Msa1030030 AT2G17800.1 33.728 169 98 6 8 164 6 172 1.64e-22 90.5
Msa1030030 AT5G20010.1 29.670 182 123 3 9 188 14 192 1.72e-22 90.9
Msa1030030 AT5G46025.1 42.056 107 61 1 70 175 6 112 2.87e-22 87.4
Msa1030030 AT5G20020.1 30.435 161 109 2 9 169 14 171 4.40e-22 90.1
Msa1030030 AT4G35950.1 33.136 169 99 6 8 164 6 172 5.08e-22 89.4
Msa1030030 AT4G28950.1 29.703 202 121 8 8 199 6 196 5.68e-22 89.4
Msa1030030 AT1G75840.1 31.361 169 102 5 8 164 6 172 5.88e-22 89.0
Msa1030030 AT5G45970.1 31.737 167 100 6 8 162 6 170 1.43e-21 88.2
Msa1030030 AT3G48040.1 30.769 169 103 5 8 164 8 174 1.17e-20 85.9
Msa1030030 AT1G20090.1 30.178 169 104 5 8 164 5 171 2.24e-20 84.7
Msa1030030 AT3G48040.2 34.146 123 78 3 8 129 8 128 1.69e-19 82.0
Msa1030030 AT5G62880.1 29.940 167 103 5 8 162 8 172 6.07e-19 81.6
Msa1030030 AT5G62880.2 33.333 123 79 3 8 129 8 128 1.65e-18 79.7
Msa1030030 AT4G35020.4 35.965 114 70 3 10 122 8 119 2.70e-18 78.2
Msa1030030 AT4G35020.5 35.965 114 70 3 10 122 8 119 2.70e-18 78.2
Msa1030030 AT3G49870.2 35.366 164 86 7 9 162 1 154 1.37e-14 68.9
Msa1030030 AT3G49870.1 35.366 164 86 7 9 162 20 173 4.05e-14 68.2
Msa1030030 AT5G67560.1 35.366 164 86 7 9 162 20 173 6.71e-14 67.4
Msa1030030 AT3G51290.2 33.803 142 80 6 35 164 634 773 1.20e-13 69.3
Msa1030030 AT5G37680.1 32.500 160 90 6 9 159 20 170 3.21e-13 65.5
Msa1030030 AT2G15310.1 31.731 104 63 4 10 113 19 114 6.32e-11 59.7

Find 79 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGCACTTGTTTCCATAAA+AGG 0.153571 7_1:+63820787 None:intergenic
CATTCTTTGAATATACTTAA+TGG 0.174533 7_1:-63819324 Msa1030030:three_prime_UTR
AAATGTCGAACAGGCATTTA+TGG 0.216366 7_1:-63820755 Msa1030030:CDS
CAGGCATTTGCAGATGAAAT+AGG 0.278594 7_1:-63820814 Msa1030030:CDS
CAGCTGGCCAAGAACGATTT+AGG 0.305104 7_1:-63821289 Msa1030030:CDS
ACATACGATTTGGAGCTTAA+TGG 0.308951 7_1:+63821517 None:intergenic
ATATTCTGATCTATTTCATT+TGG 0.351848 7_1:-63819454 Msa1030030:three_prime_UTR
GGAGGCCTTGCATTGTTTGT+AGG 0.364796 7_1:+63819542 None:intergenic
TTATTATATGACTAAAATAG+TGG 0.376437 7_1:-63819395 Msa1030030:three_prime_UTR
TAAGAATTTGTCTGGTGGTT+TGG 0.380376 7_1:-63819365 Msa1030030:three_prime_UTR
AAGTGAGGAACATACTATTC+AGG 0.384451 7_1:+63823200 None:intergenic
TGATTGTCCTAAATCGTTCT+TGG 0.390726 7_1:+63821282 None:intergenic
ATATGAGTACCTATCCTTGA+TGG 0.396903 7_1:+63820720 None:intergenic
GGTGATCGGCGAGTTGTTGC+CGG 0.399092 7_1:+63823246 None:intergenic
TTGAGATGATTTGATCTGTA+TGG 0.406171 7_1:+63823407 None:intergenic
GAAAATCCGCACAGTTGAAC+AGG 0.426213 7_1:-63821549 Msa1030030:CDS
CCCCTTATCTGCACTGTTGG+AGG 0.429950 7_1:+63819524 None:intergenic
CATTAAGTATATTCAAAGAA+TGG 0.430659 7_1:+63819325 None:intergenic
TGATGAGAAACGCGTGGAAA+AGG 0.435614 7_1:+63823357 None:intergenic
GGCCTCCAACAGTGCAGATA+AGG 0.443333 7_1:-63819526 Msa1030030:CDS
GCCTTGCATTGTTTGTAGGT+TGG 0.450220 7_1:+63819546 None:intergenic
GCCTCCAACAGTGCAGATAA+GGG 0.451383 7_1:-63819525 Msa1030030:CDS
AATCAGAAGGAATCGGTTGT+TGG 0.457586 7_1:+63823319 None:intergenic
TTTGAATATACTTAATGGTA+TGG 0.458603 7_1:-63819319 Msa1030030:three_prime_UTR
ATTAAGTATATTCAAAGAAT+GGG 0.468341 7_1:+63819326 None:intergenic
GGATTCTACAAATGTCGAAC+AGG 0.469392 7_1:-63820764 Msa1030030:CDS
GGCAATGGCTTCTTCCATCA+AGG 0.481447 7_1:-63820734 Msa1030030:CDS
GATGAGAAACGCGTGGAAAA+GGG 0.488049 7_1:+63823358 None:intergenic
TTGATTGGAGACTCTGGTGT+TGG 0.492888 7_1:-63822626 Msa1030030:CDS
AATGTTAACAAGCTCTTGGT+TGG 0.494106 7_1:-63821049 Msa1030030:CDS
TGATAATGTTAACAAGCTCT+TGG 0.495654 7_1:-63821053 Msa1030030:CDS
AGGGAGAGTTCGTCGGAGAT+TGG 0.497417 7_1:+63823269 None:intergenic
AGCTACTACCGTGGGGCACA+TGG 0.500719 7_1:-63821254 Msa1030030:CDS
TGTCCCCTTATCTGCACTGT+TGG 0.505248 7_1:+63819521 None:intergenic
GACCAATGTAAGAATTTGTC+TGG 0.517933 7_1:-63819373 Msa1030030:three_prime_UTR
CAGCCAGTTGGCCAGAAAAG+TGG 0.520499 7_1:-63819500 Msa1030030:CDS
CGAACAGGCATTTATGGCAA+TGG 0.532623 7_1:-63820749 Msa1030030:CDS
CTCGAGAAATCAGAAGGAAT+CGG 0.534082 7_1:+63823312 None:intergenic
GGAGATTGGTGCAGTAGCGG+TGG 0.534801 7_1:+63823283 None:intergenic
TGCCCCACGGTAGTAGCTAC+TGG 0.542749 7_1:+63821259 None:intergenic
GACAGCTACATAAGCACCAT+TGG 0.547410 7_1:-63821664 Msa1030030:CDS
TTCAAAGAATGGGATCATCT+AGG 0.551286 7_1:+63819336 None:intergenic
CACCAGACAAATTCTTACAT+TGG 0.551916 7_1:+63819371 None:intergenic
TTCATGTCTGAAAGAGTGAA+AGG 0.553749 7_1:+63823224 None:intergenic
CGATTCCTTCTGATTTCTCG+AGG 0.554834 7_1:-63823311 Msa1030030:five_prime_UTR
GTGGAAAAGGGGATTAAATA+CGG 0.557298 7_1:+63823370 None:intergenic
AGCCAGTTGGCCAGAAAAGT+GGG 0.560192 7_1:-63819499 Msa1030030:CDS
CAGATAAGGGGACAGCCAGT+TGG 0.562181 7_1:-63819512 Msa1030030:CDS
ATCCGCACAGTTGAACAGGA+TGG 0.566980 7_1:-63821545 Msa1030030:CDS
TTACAGCAAATCTGAGCAGA+AGG 0.577201 7_1:+63822594 None:intergenic
TGAAAGAGTGAAAGGGTGAT+CGG 0.581681 7_1:+63823232 None:intergenic
TGAGATGATTTGATCTGTAT+GGG 0.583440 7_1:+63823408 None:intergenic
GCTCGAAATGAAACAAAGGC+AGG 0.589864 7_1:+63819255 None:intergenic
GAGATTGGTGCAGTAGCGGT+GGG 0.590006 7_1:+63823284 None:intergenic
TCCCATCCTGTTCAACTGTG+CGG 0.594596 7_1:+63821543 None:intergenic
GCCAACCTACAAACAATGCA+AGG 0.594963 7_1:-63819547 Msa1030030:CDS
TGGCTTCTTCCATCAAGGAT+AGG 0.595319 7_1:-63820729 Msa1030030:intron
TTGCCGGAGGGAGAGTTCGT+CGG 0.597494 7_1:+63823262 None:intergenic
CATATGTAGTGGGATACAGC+TGG 0.598167 7_1:-63821305 Msa1030030:intron
TCATGTCTGAAAGAGTGAAA+GGG 0.603002 7_1:+63823225 None:intergenic
ATGAGAAACGCGTGGAAAAG+GGG 0.607847 7_1:+63823359 None:intergenic
GTCGGAGATTGGTGCAGTAG+CGG 0.610962 7_1:+63823280 None:intergenic
CAATGTAAGAATTTGTCTGG+TGG 0.611546 7_1:-63819370 Msa1030030:three_prime_UTR
ACTTACAAAATCAACTCCAA+TGG 0.612564 7_1:+63821648 None:intergenic
GCTTCAATAATGTGAAGCAA+TGG 0.626631 7_1:-63821102 Msa1030030:CDS
GATCGGCGAGTTGTTGCCGG+AGG 0.627251 7_1:+63823249 None:intergenic
GTTAACCTCGAGAAATCAGA+AGG 0.628467 7_1:+63823306 None:intergenic
CCTCCAACAGTGCAGATAAG+GGG 0.629255 7_1:-63819524 Msa1030030:CDS
TCACCAGTAGCTACTACCGT+GGG 0.632543 7_1:-63821262 Msa1030030:CDS
TCTCCGACGAACTCTCCCTC+CGG 0.636987 7_1:-63823265 Msa1030030:five_prime_UTR
CAATGATTCCATGTGCCCCA+CGG 0.637566 7_1:+63821246 None:intergenic
ATCACCAGTAGCTACTACCG+TGG 0.643184 7_1:-63821263 Msa1030030:CDS
ATCGGCGAGTTGTTGCCGGA+GGG 0.654115 7_1:+63823250 None:intergenic
GATGATTTGATCTGTATGGG+TGG 0.659029 7_1:+63823411 None:intergenic
TCACGCTCGAAATGAAACAA+AGG 0.664879 7_1:+63819251 None:intergenic
AAATAGATCAGAATATCTTG+TGG 0.668102 7_1:+63819461 None:intergenic
TTGATATGATGAGAAACGCG+TGG 0.686863 7_1:+63823351 None:intergenic
TAACATTATCACTAGCATAG+CGG 0.731455 7_1:+63821065 None:intergenic
CACCAGTAGCTACTACCGTG+GGG 0.776894 7_1:-63821261 Msa1030030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTATTTTAATTTTAATT+AGG - chr7_1:63822540-63822559 Msa1030030:intron 0.0%
!!! TTTTATTTTAATTTTAATTA+GGG - chr7_1:63822541-63822560 Msa1030030:intron 0.0%
!!! AAAAATTAAGATTTTACAAT+TGG - chr7_1:63819896-63819915 Msa1030030:intron 10.0%
!! ATTCAATTATTTATAAACAA+TGG - chr7_1:63820567-63820586 Msa1030030:intron 10.0%
!! AAATAAAAATAAAAATGCAA+GGG + chr7_1:63821726-63821745 None:intergenic 10.0%
!! AAAATAAAAATAAAAATGCA+AGG + chr7_1:63821727-63821746 None:intergenic 10.0%
!! TAATTAAAGTAATTAAAATG+GGG + chr7_1:63822940-63822959 None:intergenic 10.0%
!! AAACATAAAAAAAACGTAAA+AGG + chr7_1:63819557-63819576 None:intergenic 15.0%
!! AACATATATAATTCAATCTA+GGG + chr7_1:63819688-63819707 None:intergenic 15.0%
!! TAACATATATAATTCAATCT+AGG + chr7_1:63819689-63819708 None:intergenic 15.0%
!! TTGAATTATATATGTTAATC+AGG - chr7_1:63819692-63819711 Msa1030030:intron 15.0%
!! TGAAAAGTAACAAAATTTAT+TGG + chr7_1:63820355-63820374 None:intergenic 15.0%
!! ATGAGATAATAAATAGTTTA+GGG + chr7_1:63820396-63820415 None:intergenic 15.0%
!! AATGAGATAATAAATAGTTT+AGG + chr7_1:63820397-63820416 None:intergenic 15.0%
!!! ATTAATTATTGTTTTGTCTT+GGG + chr7_1:63820446-63820465 None:intergenic 15.0%
!! AACAATAATTAATGTTGTAT+TGG - chr7_1:63820453-63820472 Msa1030030:intron 15.0%
!!! AACTTTTTTTTTAATCTTGT+TGG - chr7_1:63821247-63821266 Msa1030030:CDS 15.0%
!! AATAAAAATAAAAATGCAAG+GGG + chr7_1:63821725-63821744 None:intergenic 15.0%
!! AGAAAAACATAATATAGATA+AGG + chr7_1:63821840-63821859 None:intergenic 15.0%
!!! ATATTATGTTTTTCTTTAAC+AGG - chr7_1:63821845-63821864 Msa1030030:intron 15.0%
!!! AATTAAACATTTTAACATCA+AGG - chr7_1:63822806-63822825 Msa1030030:intron 15.0%
!! ATTACTTTAATTAAAAGACT+TGG - chr7_1:63822947-63822966 Msa1030030:intron 15.0%
!! TTATTATATGACTAAAATAG+TGG - chr7_1:63823283-63823302 Msa1030030:five_prime_UTR 15.0%
!! ATTAAGTATATTCAAAGAAT+GGG + chr7_1:63823355-63823374 None:intergenic 15.0%
!! AGAAAATAAAAAACGAATCA+AGG + chr7_1:63819523-63819542 None:intergenic 20.0%
!!! TTTTTATGTTTTCTCTCAAA+AGG - chr7_1:63819566-63819585 Msa1030030:intron 20.0%
!!! TTTTATGTTTTCTCTCAAAA+GGG - chr7_1:63819567-63819586 Msa1030030:intron 20.0%
!!! TTAATTTGGTTTATATAAGC+TGG - chr7_1:63819596-63819615 Msa1030030:intron 20.0%
!!! TAATTTGGTTTATATAAGCT+GGG - chr7_1:63819597-63819616 Msa1030030:intron 20.0%
!!! TTAATTATTGTTTTGTCTTG+GGG + chr7_1:63820445-63820464 None:intergenic 20.0%
!!! CATTAATTATTGTTTTGTCT+TGG + chr7_1:63820447-63820466 None:intergenic 20.0%
!! TTTGAAAACAACAAGTTAAT+AGG - chr7_1:63820478-63820497 Msa1030030:intron 20.0%
!!! TTAAAAAGAAGTATGTGTTT+TGG - chr7_1:63820825-63820844 Msa1030030:intron 20.0%
!!! TTAAACAAATTTTACCTAGA+AGG - chr7_1:63822338-63822357 Msa1030030:intron 20.0%
!!! ATGATTTTCGATAAATACTT+AGG + chr7_1:63822392-63822411 None:intergenic 20.0%
!!! TTGAAATTTTGATACAATGA+AGG + chr7_1:63822615-63822634 None:intergenic 20.0%
!!! TCACAATAACTCTTTTATTT+AGG - chr7_1:63822701-63822720 Msa1030030:intron 20.0%
!!! CACAATAACTCTTTTATTTA+GGG - chr7_1:63822702-63822721 Msa1030030:intron 20.0%
!! ACAATAAACATGTACTTATA+AGG - chr7_1:63822734-63822753 Msa1030030:intron 20.0%
!! ACAATAAGTAAGTATATTGA+AGG - chr7_1:63822766-63822785 Msa1030030:intron 20.0%
!!! TAATTAAAAGACTTGGTTTT+AGG - chr7_1:63822954-63822973 Msa1030030:intron 20.0%
!! GAAAAGTTGTTTACTTTAAA+AGG - chr7_1:63823012-63823031 Msa1030030:intron 20.0%
!!! ATTTTTTCTTGAATGTAGAA+TGG - chr7_1:63823105-63823124 Msa1030030:intron 20.0%
!! ATATTCTGATCTATTTCATT+TGG - chr7_1:63823224-63823243 Msa1030030:exon 20.0%
!! CATTAAGTATATTCAAAGAA+TGG + chr7_1:63823356-63823375 None:intergenic 20.0%
!! CATTCTTTGAATATACTTAA+TGG - chr7_1:63823354-63823373 Msa1030030:five_prime_UTR 20.0%
!! TTTGAATATACTTAATGGTA+TGG - chr7_1:63823359-63823378 Msa1030030:five_prime_UTR 20.0%
! CATCTCTTATAAATCAACAA+GGG + chr7_1:63819803-63819822 None:intergenic 25.0%
! ACATCTCTTATAAATCAACA+AGG + chr7_1:63819804-63819823 None:intergenic 25.0%
! TGATTTCATGTTGATATATG+TGG - chr7_1:63819929-63819948 Msa1030030:intron 25.0%
! ACAACATTACACTATAGTAT+CGG + chr7_1:63820172-63820191 None:intergenic 25.0%
! TACTATAGTGTAATGTTGTA+TGG - chr7_1:63820173-63820192 Msa1030030:intron 25.0%
!! TGTTGTATGGTTTTCATTTT+CGG - chr7_1:63820186-63820205 Msa1030030:intron 25.0%
! AATTAACTCAAGTGGAAATA+AGG + chr7_1:63820216-63820235 None:intergenic 25.0%
! GATAAAACAATTAACTCAAG+TGG + chr7_1:63820224-63820243 None:intergenic 25.0%
! ACAACAATAACTAAAAGGAA+CGG + chr7_1:63820307-63820326 None:intergenic 25.0%
!!! TTCCTTTTAGTTATTGTTGT+AGG - chr7_1:63820307-63820326 Msa1030030:intron 25.0%
!!! TCCTTTTAGTTATTGTTGTA+GGG - chr7_1:63820308-63820327 Msa1030030:intron 25.0%
! ATTTATTATCTCATTCCACA+TGG - chr7_1:63820402-63820421 Msa1030030:intron 25.0%
!!! TAATTATTGTTTTGTCTTGG+GGG + chr7_1:63820444-63820463 None:intergenic 25.0%
! AATAAATCAATAGTTGTGCT+TGG - chr7_1:63820634-63820653 Msa1030030:intron 25.0%
! CTTTACTTTGAACTAGAAAA+TGG - chr7_1:63820734-63820753 Msa1030030:CDS 25.0%
! ACAATCATATACATACGATT+TGG + chr7_1:63821174-63821193 None:intergenic 25.0%
! TAAGTTTACAACTCAAAAGA+AGG - chr7_1:63822054-63822073 Msa1030030:intron 25.0%
! AAATGATTCTAAGCTAAAGA+AGG + chr7_1:63822102-63822121 None:intergenic 25.0%
! TCATTCATATTTGATTGGAT+GGG + chr7_1:63822184-63822203 None:intergenic 25.0%
! CTAAGTCATTCATATTTGAT+TGG + chr7_1:63822189-63822208 None:intergenic 25.0%
! CAAAAAAATACCATGTAGTT+TGG - chr7_1:63822236-63822255 Msa1030030:intron 25.0%
! ACTAACAAAATGCATAATCA+GGG - chr7_1:63822838-63822857 Msa1030030:intron 25.0%
! TTTAGGCTTAGATATACATT+TGG - chr7_1:63822971-63822990 Msa1030030:intron 25.0%
! AAATAGATCAGAATATCTTG+TGG + chr7_1:63823220-63823239 None:intergenic 25.0%
TGAGATGATTTGATCTGTAT+GGG + chr7_1:63819273-63819292 None:intergenic 30.0%
TTGAGATGATTTGATCTGTA+TGG + chr7_1:63819274-63819293 None:intergenic 30.0%
CATGAAAACTCAAAAACACA+AGG + chr7_1:63819731-63819750 None:intergenic 30.0%
TTCATGTTGATATATGTGGA+TGG - chr7_1:63819933-63819952 Msa1030030:intron 30.0%
! CTGTTTAAGCTTCTTTTGAT+TGG - chr7_1:63820037-63820056 Msa1030030:intron 30.0%
!! CTGCTTGTTGTTTATTATGT+TGG - chr7_1:63820124-63820143 Msa1030030:intron 30.0%
TTATGTTGGATACTCTTGTT+TGG - chr7_1:63820138-63820157 Msa1030030:intron 30.0%
! AAGGCTTCTAATTGTTACTT+GGG + chr7_1:63820250-63820269 None:intergenic 30.0%
AAAGGCTTCTAATTGTTACT+TGG + chr7_1:63820251-63820270 None:intergenic 30.0%
AAGTAACAATTAGAAGCCTT+TGG - chr7_1:63820250-63820269 Msa1030030:intron 30.0%
AGTAACAATTAGAAGCCTTT+GGG - chr7_1:63820251-63820270 Msa1030030:intron 30.0%
ACCCTACAACAATAACTAAA+AGG + chr7_1:63820312-63820331 None:intergenic 30.0%
!! AATTATTGTTTTGTCTTGGG+GGG + chr7_1:63820443-63820462 None:intergenic 30.0%
AAGTGACTAGTAAAGATGAA+CGG - chr7_1:63820519-63820538 Msa1030030:intron 30.0%
CTACCTGTTTAATTCTTTGT+TGG - chr7_1:63820590-63820609 Msa1030030:intron 30.0%
TTAATCAGACATTCTCCATA+AGG + chr7_1:63820760-63820779 None:intergenic 30.0%
GATAGTTACCAACCTAAAAA+AGG - chr7_1:63820877-63820896 Msa1030030:intron 30.0%
!!! CCATTTTACCTTTTTTAGGT+TGG + chr7_1:63820888-63820907 None:intergenic 30.0%
CCAACCTAAAAAAGGTAAAA+TGG - chr7_1:63820885-63820904 Msa1030030:intron 30.0%
!! GAAGCCATTTTACCTTTTTT+AGG + chr7_1:63820892-63820911 None:intergenic 30.0%
!! AACGTTAAGTTTTATGCTAC+AGG - chr7_1:63820977-63820996 Msa1030030:intron 30.0%
ACTTACAAAATCAACTCCAA+TGG + chr7_1:63821033-63821052 None:intergenic 30.0%
TGATCCAATTTCATATGTAG+TGG - chr7_1:63821362-63821381 Msa1030030:intron 30.0%
GATCCAATTTCATATGTAGT+GGG - chr7_1:63821363-63821382 Msa1030030:intron 30.0%
TATCCCACTACATATGAAAT+TGG + chr7_1:63821369-63821388 None:intergenic 30.0%
TTTATATTTCCCGACTTTGT+TGG - chr7_1:63821486-63821505 Msa1030030:intron 30.0%
TAACATTATCACTAGCATAG+CGG + chr7_1:63821616-63821635 None:intergenic 30.0%
! TGATAATGTTAACAAGCTCT+TGG - chr7_1:63821625-63821644 Msa1030030:intron 30.0%
TAGATAAGGATAGCTGAAAT+AGG + chr7_1:63821826-63821845 None:intergenic 30.0%
! TGAAATAGGCATACCTTTTA+TGG - chr7_1:63821878-63821897 Msa1030030:intron 30.0%
TTTGCACTTGTTTCCATAAA+AGG + chr7_1:63821894-63821913 None:intergenic 30.0%
! TTTTATGGAAACAAGTGCAA+AGG - chr7_1:63821893-63821912 Msa1030030:intron 30.0%
GATGAACAGTTAAATATGCT+TGG - chr7_1:63822006-63822025 Msa1030030:intron 30.0%
!!! TTATGCCTTTTAGTTTTCCT+TGG - chr7_1:63822122-63822141 Msa1030030:intron 30.0%
GTCATTCATATTTGATTGGA+TGG + chr7_1:63822185-63822204 None:intergenic 30.0%
AAAATACCATGTAGTTTGGT+TGG - chr7_1:63822240-63822259 Msa1030030:intron 30.0%
AAATACCATGTAGTTTGGTT+GGG - chr7_1:63822241-63822260 Msa1030030:intron 30.0%
TATCGAAAATCATAGTCACA+TGG - chr7_1:63822399-63822418 Msa1030030:intron 30.0%
!!! GCAACAAGATTTTGGAATTT+TGG + chr7_1:63822453-63822472 None:intergenic 30.0%
ATAAAATGACAGTCCTTTCA+AGG + chr7_1:63822527-63822546 None:intergenic 30.0%
GACTAATCATGACATATTCA+AGG + chr7_1:63822584-63822603 None:intergenic 30.0%
ACTAACATAATGCACAATCA+AGG + chr7_1:63822644-63822663 None:intergenic 30.0%
!!! GAAAGGTTATTTTAGTGTCA+AGG + chr7_1:63822676-63822695 None:intergenic 30.0%
GACTAACAAAATGCATAATC+AGG - chr7_1:63822837-63822856 Msa1030030:intron 30.0%
!! TTGAGGTTTTGATACATTGA+AGG - chr7_1:63822867-63822886 Msa1030030:intron 30.0%
TGACTACTCATTACAATTTC+CGG - chr7_1:63822897-63822916 Msa1030030:intron 30.0%
! ACAACTTTTCATTGAACATC+AGG + chr7_1:63823002-63823021 None:intergenic 30.0%
CATCAGAATTTGATCTTAGA+GGG + chr7_1:63823082-63823101 None:intergenic 30.0%
TCATCAGAATTTGATCTTAG+AGG + chr7_1:63823083-63823102 None:intergenic 30.0%
!!! TCGTTGCTTGTAAGATTTTT+TGG - chr7_1:63823255-63823274 Msa1030030:five_prime_UTR 30.0%
GTGGAAAAGGGGATTAAATA+CGG + chr7_1:63819311-63819330 None:intergenic 35.0%
TCATGTCTGAAAGAGTGAAA+GGG + chr7_1:63819456-63819475 None:intergenic 35.0%
TTCATGTCTGAAAGAGTGAA+AGG + chr7_1:63819457-63819476 None:intergenic 35.0%
AAGTGAGGAACATACTATTC+AGG + chr7_1:63819481-63819500 None:intergenic 35.0%
! ATGTTTTCTCTCAAAAGGGT+TGG - chr7_1:63819571-63819590 Msa1030030:intron 35.0%
!! CAAAAGGGTTGGTGTTAATT+TGG - chr7_1:63819582-63819601 Msa1030030:intron 35.0%
! CAATCTAGGGTTAGAATTTC+AGG + chr7_1:63819675-63819694 None:intergenic 35.0%
CACTAACAAGATCAGATTCA+GGG + chr7_1:63819778-63819797 None:intergenic 35.0%
TCACTAACAAGATCAGATTC+AGG + chr7_1:63819779-63819798 None:intergenic 35.0%
CAATAACTAAAAGGAACGGA+TGG + chr7_1:63820303-63820322 None:intergenic 35.0%
AGATGAACGGATGTAGTAAT+TGG - chr7_1:63820532-63820551 Msa1030030:intron 35.0%
CCTCCAACAAAGAATTAAAC+AGG + chr7_1:63820596-63820615 None:intergenic 35.0%
CCTGTTTAATTCTTTGTTGG+AGG - chr7_1:63820593-63820612 Msa1030030:intron 35.0%
ACTTTCAACAATATCCCGAA+AGG + chr7_1:63820688-63820707 None:intergenic 35.0%
GGATATTGTTGAAAGTGATG+AGG - chr7_1:63820692-63820711 Msa1030030:intron 35.0%
TTCAAAGTAAAGCTCACAAC+AGG + chr7_1:63820726-63820745 None:intergenic 35.0%
! TGAACTAGAAAATGGCCTTA+TGG - chr7_1:63820742-63820761 Msa1030030:CDS 35.0%
!!! AAAGAAGTATGTGTTTTGGC+TGG - chr7_1:63820829-63820848 Msa1030030:intron 35.0%
AATGGCTTCACTTTGTATGT+TGG - chr7_1:63820903-63820922 Msa1030030:intron 35.0%
! CTTTGTATGTTGGTTGATCT+TGG - chr7_1:63820913-63820932 Msa1030030:intron 35.0%
! ACATACGATTTGGAGCTTAA+TGG + chr7_1:63821164-63821183 None:intergenic 35.0%
GTTAAGAAACAATGTCAACG+TGG + chr7_1:63821334-63821353 None:intergenic 35.0%
TGATTGTCCTAAATCGTTCT+TGG + chr7_1:63821399-63821418 None:intergenic 35.0%
GCTTTACTAACTGGTTATTC+TGG - chr7_1:63821522-63821541 Msa1030030:intron 35.0%
GCTTCAATAATGTGAAGCAA+TGG - chr7_1:63821576-63821595 Msa1030030:intron 35.0%
AATGTTAACAAGCTCTTGGT+TGG - chr7_1:63821629-63821648 Msa1030030:intron 35.0%
AAATGTCGAACAGGCATTTA+TGG - chr7_1:63821923-63821942 Msa1030030:intron 35.0%
ATATGAGTACCTATCCTTGA+TGG + chr7_1:63821961-63821980 None:intergenic 35.0%
!! TTTGCTCTAACTTGCTTAGA+AGG + chr7_1:63822032-63822051 None:intergenic 35.0%
AAGCTAAAGAAGGTTGGAAT+GGG + chr7_1:63822092-63822111 None:intergenic 35.0%
TAAGCTAAAGAAGGTTGGAA+TGG + chr7_1:63822093-63822112 None:intergenic 35.0%
GATTCTAAGCTAAAGAAGGT+TGG + chr7_1:63822098-63822117 None:intergenic 35.0%
!!! GGTATTTTTTTGCCTCACTT+AGG + chr7_1:63822228-63822247 None:intergenic 35.0%
! ATGACACGACATTGATTGAT+TGG + chr7_1:63822281-63822300 None:intergenic 35.0%
GGTTTCCAAAATGATTTCCT+CGG + chr7_1:63822432-63822451 None:intergenic 35.0%
! AAGAATGGGCAACAAGATTT+TGG + chr7_1:63822461-63822480 None:intergenic 35.0%
ATTAGGGGTAATAGTCACTT+TGG - chr7_1:63822557-63822576 Msa1030030:intron 35.0%
!! GAGTTATTGTGAGCATTGAA+AGG + chr7_1:63822693-63822712 None:intergenic 35.0%
! CATAATCAGGGACTATTTTG+AGG - chr7_1:63822850-63822869 Msa1030030:intron 35.0%
GACTACTCATTACAATTTCC+GGG - chr7_1:63822898-63822917 Msa1030030:intron 35.0%
AAATGGGGTAATAGTCACTT+TGG + chr7_1:63822925-63822944 None:intergenic 35.0%
GACCAATGTAAGAATTTGTC+TGG - chr7_1:63823305-63823324 Msa1030030:five_prime_UTR 35.0%
CACCAGACAAATTCTTACAT+TGG + chr7_1:63823310-63823329 None:intergenic 35.0%
CAATGTAAGAATTTGTCTGG+TGG - chr7_1:63823308-63823327 Msa1030030:five_prime_UTR 35.0%
TAAGAATTTGTCTGGTGGTT+TGG - chr7_1:63823313-63823332 Msa1030030:five_prime_UTR 35.0%
TTCAAAGAATGGGATCATCT+AGG + chr7_1:63823345-63823364 None:intergenic 35.0%
GATGATTTGATCTGTATGGG+TGG + chr7_1:63819270-63819289 None:intergenic 40.0%
TTGATATGATGAGAAACGCG+TGG + chr7_1:63819330-63819349 None:intergenic 40.0%
AATCAGAAGGAATCGGTTGT+TGG + chr7_1:63819362-63819381 None:intergenic 40.0%
CTCGAGAAATCAGAAGGAAT+CGG + chr7_1:63819369-63819388 None:intergenic 40.0%
GTTAACCTCGAGAAATCAGA+AGG + chr7_1:63819375-63819394 None:intergenic 40.0%
TGAAAGAGTGAAAGGGTGAT+CGG + chr7_1:63819449-63819468 None:intergenic 40.0%
TCGAGAAGGAATAGAAAGTG+AGG + chr7_1:63819496-63819515 None:intergenic 40.0%
CGAATCAAGGAAAATCGAGA+AGG + chr7_1:63819510-63819529 None:intergenic 40.0%
!! CTTCTTTTGATTGGAGACTC+TGG - chr7_1:63820046-63820065 Msa1030030:intron 40.0%
TTACAGCAAATCTGAGCAGA+AGG + chr7_1:63820087-63820106 None:intergenic 40.0%
AGAGAGAGAGAAATACCATG+TGG + chr7_1:63820420-63820439 None:intergenic 40.0%
! TGGAGGTTTTTGTGTAGTTC+TGG - chr7_1:63820610-63820629 Msa1030030:intron 40.0%
GTTGTGCTTGGAACTTTATG+AGG - chr7_1:63820646-63820665 Msa1030030:intron 40.0%
TGCTTGGAACTTTATGAGGT+TGG - chr7_1:63820650-63820669 Msa1030030:intron 40.0%
GCTTGGAACTTTATGAGGTT+GGG - chr7_1:63820651-63820670 Msa1030030:intron 40.0%
CTTGGAACTTTATGAGGTTG+GGG - chr7_1:63820652-63820671 Msa1030030:intron 40.0%
TTGGAACTTTATGAGGTTGG+GGG - chr7_1:63820653-63820672 Msa1030030:intron 40.0%
GGAATCATTGTGCGTAATGA+TGG - chr7_1:63821445-63821464 Msa1030030:intron 40.0%
AAGGAAAGACCAACAAAGTC+GGG + chr7_1:63821498-63821517 None:intergenic 40.0%
CAAGGAAAGACCAACAAAGT+CGG + chr7_1:63821499-63821518 None:intergenic 40.0%
TCCTTGCATGCTTTACTAAC+TGG - chr7_1:63821513-63821532 Msa1030030:intron 40.0%
ACCAGTTAGTAAAGCATGCA+AGG + chr7_1:63821517-63821536 None:intergenic 40.0%
CAGGCATTTGCAGATGAAAT+AGG - chr7_1:63821864-63821883 Msa1030030:intron 40.0%
GGATTCTACAAATGTCGAAC+AGG - chr7_1:63821914-63821933 Msa1030030:intron 40.0%
!!! CCTTTTAGTTTTCCTTGGCT+GGG - chr7_1:63822127-63822146 Msa1030030:intron 40.0%
! AAATTGACTTATCCCAGCCA+AGG + chr7_1:63822142-63822161 None:intergenic 40.0%
! GCTGGGATAAGTCAATTTTG+AGG - chr7_1:63822144-63822163 Msa1030030:intron 40.0%
AATGACTTAGAGCCATACAG+AGG - chr7_1:63822199-63822218 Msa1030030:intron 40.0%
TCACTTAGGTATCCTCTGTA+TGG + chr7_1:63822214-63822233 None:intergenic 40.0%
ATACAGAGGATACCTAAGTG+AGG - chr7_1:63822213-63822232 Msa1030030:intron 40.0%
ACATACCCAACCAAACTACA+TGG + chr7_1:63822249-63822268 None:intergenic 40.0%
! ACATTGATTGATTGGACGAG+GGG + chr7_1:63822273-63822292 None:intergenic 40.0%
! GACATTGATTGATTGGACGA+GGG + chr7_1:63822274-63822293 None:intergenic 40.0%
! CGATAAATACTTAGGTACCG+TGG + chr7_1:63822384-63822403 None:intergenic 40.0%
TCCAAAATGATTTCCTCGGT+CGG + chr7_1:63822428-63822447 None:intergenic 40.0%
GCAGCAGATCAAGAAAGAAT+GGG + chr7_1:63822475-63822494 None:intergenic 40.0%
TGCAGCAGATCAAGAAAGAA+TGG + chr7_1:63822476-63822495 None:intergenic 40.0%
AGGGTAATCATCACCTTGAA+AGG - chr7_1:63822511-63822530 Msa1030030:intron 40.0%
! CACTAACTTCTTTTCGTTGC+TGG - chr7_1:63823048-63823067 Msa1030030:intron 40.0%
ATGAGAAACGCGTGGAAAAG+GGG + chr7_1:63819322-63819341 None:intergenic 45.0%
GATGAGAAACGCGTGGAAAA+GGG + chr7_1:63819323-63819342 None:intergenic 45.0%
TGATGAGAAACGCGTGGAAA+AGG + chr7_1:63819324-63819343 None:intergenic 45.0%
CGATTCCTTCTGATTTCTCG+AGG - chr7_1:63819367-63819386 Msa1030030:three_prime_UTR 45.0%
GTGATAGAGCTGATGTGTTG+TGG - chr7_1:63819994-63820013 Msa1030030:intron 45.0%
TTGATTGGAGACTCTGGTGT+TGG - chr7_1:63820052-63820071 Msa1030030:intron 45.0%
TGGAACTTTATGAGGTTGGG+GGG - chr7_1:63820654-63820673 Msa1030030:intron 45.0%
TGGGGGGAGATAAAACCTTT+CGG - chr7_1:63820670-63820689 Msa1030030:intron 45.0%
! TGTTGGTTGATCTTGGTTCG+TGG - chr7_1:63820920-63820939 Msa1030030:intron 45.0%
TGGTTCGTGGAGATGATATG+TGG - chr7_1:63820933-63820952 Msa1030030:intron 45.0%
GACAGCTACATAAGCACCAT+TGG - chr7_1:63821014-63821033 Msa1030030:CDS 45.0%
GAAAATCCGCACAGTTGAAC+AGG - chr7_1:63821129-63821148 Msa1030030:CDS 45.0%
! CATATGTAGTGGGATACAGC+TGG - chr7_1:63821373-63821392 Msa1030030:intron 45.0%
CGAACAGGCATTTATGGCAA+TGG - chr7_1:63821929-63821948 Msa1030030:intron 45.0%
TGGCTTCTTCCATCAAGGAT+AGG - chr7_1:63821949-63821968 Msa1030030:intron 45.0%
!!! GCCTTTTAGTTTTCCTTGGC+TGG - chr7_1:63822126-63822145 Msa1030030:intron 45.0%
CCCAGCCAAGGAAAACTAAA+AGG + chr7_1:63822130-63822149 None:intergenic 45.0%
! CGACATTGATTGATTGGACG+AGG + chr7_1:63822275-63822294 None:intergenic 45.0%
GTTGGGTATCAGTACCTTCT+AGG + chr7_1:63822355-63822374 None:intergenic 45.0%
TGATACCCAACCAAACTCCA+CGG - chr7_1:63822364-63822383 Msa1030030:intron 45.0%
! TACTTAGGTACCGTGGAGTT+TGG + chr7_1:63822377-63822396 None:intergenic 45.0%
AAAATGATTTCCTCGGTCGG+TGG + chr7_1:63822425-63822444 None:intergenic 45.0%
! ACCGACCGAGGAAATCATTT+TGG - chr7_1:63822424-63822443 Msa1030030:intron 45.0%
! GGTAATAGTCACTTTGGTCC+CGG + chr7_1:63822563-63822582 None:intergenic 45.0%
GCCAACCTACAAACAATGCA+AGG - chr7_1:63823131-63823150 Msa1030030:intron 45.0%
GCCTTGCATTGTTTGTAGGT+TGG + chr7_1:63823135-63823154 None:intergenic 45.0%
!!! TTTATTTTAATTTTAATTAG+GGG - chr7_1:63822542-63822561 Msa1030030:intron 5.0%
!! TTAATTAAAGTAATTAAAAT+GGG + chr7_1:63822941-63822960 None:intergenic 5.0%
!! TTTAATTAAAGTAATTAAAA+TGG + chr7_1:63822942-63822961 None:intergenic 5.0%
AACCAGTGCAACACACCCAA+AGG + chr7_1:63820269-63820288 None:intergenic 50.0%
GGGGGGAGATAAAACCTTTC+GGG - chr7_1:63820671-63820690 Msa1030030:intron 50.0%
ATCCGCACAGTTGAACAGGA+TGG - chr7_1:63821133-63821152 Msa1030030:CDS 50.0%
TCCGCACAGTTGAACAGGAT+GGG - chr7_1:63821134-63821153 Msa1030030:intron 50.0%
TCCCATCCTGTTCAACTGTG+CGG + chr7_1:63821138-63821157 None:intergenic 50.0%
CAGCTGGCCAAGAACGATTT+AGG - chr7_1:63821389-63821408 Msa1030030:intron 50.0%
ATCACCAGTAGCTACTACCG+TGG - chr7_1:63821415-63821434 Msa1030030:intron 50.0%
TCACCAGTAGCTACTACCGT+GGG - chr7_1:63821416-63821435 Msa1030030:intron 50.0%
CAATGATTCCATGTGCCCCA+CGG + chr7_1:63821435-63821454 None:intergenic 50.0%
! GTGCTTGCATAGTGCTGTTG+AGG - chr7_1:63821784-63821803 Msa1030030:intron 50.0%
GGCAATGGCTTCTTCCATCA+AGG - chr7_1:63821944-63821963 Msa1030030:intron 50.0%
! AGGTACCGTGGAGTTTGGTT+GGG + chr7_1:63822372-63822391 None:intergenic 50.0%
! TAGGTACCGTGGAGTTTGGT+TGG + chr7_1:63822373-63822392 None:intergenic 50.0%
CAAGGTGATGATTACCCTGC+TGG + chr7_1:63822509-63822528 None:intergenic 50.0%
GGAGGCCTTGCATTGTTTGT+AGG + chr7_1:63823139-63823158 None:intergenic 50.0%
GCCTCCAACAGTGCAGATAA+GGG - chr7_1:63823153-63823172 Msa1030030:intron 50.0%
CCTCCAACAGTGCAGATAAG+GGG - chr7_1:63823154-63823173 Msa1030030:intron 50.0%
TGTCCCCTTATCTGCACTGT+TGG + chr7_1:63823160-63823179 None:intergenic 50.0%
AGCCAGTTGGCCAGAAAAGT+GGG - chr7_1:63823179-63823198 Msa1030030:intron 50.0%
!! ATGAGCAGCACCCACTTTTC+TGG + chr7_1:63823192-63823211 None:intergenic 50.0%
GAGATTGGTGCAGTAGCGGT+GGG + chr7_1:63819397-63819416 None:intergenic 55.0%
GTCGGAGATTGGTGCAGTAG+CGG + chr7_1:63819401-63819420 None:intergenic 55.0%
AGGGAGAGTTCGTCGGAGAT+TGG + chr7_1:63819412-63819431 None:intergenic 55.0%
AGCCTTTGGGTGTGTTGCAC+TGG - chr7_1:63820264-63820283 Msa1030030:intron 55.0%
CACCAGTAGCTACTACCGTG+GGG - chr7_1:63821417-63821436 Msa1030030:intron 55.0%
GGCCTCCAACAGTGCAGATA+AGG - chr7_1:63823152-63823171 Msa1030030:intron 55.0%
CCCCTTATCTGCACTGTTGG+AGG + chr7_1:63823157-63823176 None:intergenic 55.0%
CAGATAAGGGGACAGCCAGT+TGG - chr7_1:63823166-63823185 Msa1030030:intron 55.0%
CAGCCAGTTGGCCAGAAAAG+TGG - chr7_1:63823178-63823197 Msa1030030:intron 55.0%
!! CACCCACTTTTCTGGCCAAC+TGG + chr7_1:63823184-63823203 None:intergenic 55.0%
GGAGATTGGTGCAGTAGCGG+TGG + chr7_1:63819398-63819417 None:intergenic 60.0%
TCTCCGACGAACTCTCCCTC+CGG - chr7_1:63819413-63819432 Msa1030030:three_prime_UTR 60.0%
TTGCCGGAGGGAGAGTTCGT+CGG + chr7_1:63819419-63819438 None:intergenic 60.0%
ATCGGCGAGTTGTTGCCGGA+GGG + chr7_1:63819431-63819450 None:intergenic 60.0%
GGTGATCGGCGAGTTGTTGC+CGG + chr7_1:63819435-63819454 None:intergenic 60.0%
TGCCCCACGGTAGTAGCTAC+TGG + chr7_1:63821422-63821441 None:intergenic 60.0%
AGCTACTACCGTGGGGCACA+TGG - chr7_1:63821424-63821443 Msa1030030:intron 60.0%
TGCACAGCTCGCAACCAGCA+GGG - chr7_1:63822492-63822511 Msa1030030:intron 60.0%
GATCGGCGAGTTGTTGCCGG+AGG + chr7_1:63819432-63819451 None:intergenic 65.0%
AGTCACATGGCCACCGACCG+AGG - chr7_1:63822412-63822431 Msa1030030:intron 65.0%
CTGCACAGCTCGCAACCAGC+AGG - chr7_1:63822491-63822510 Msa1030030:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 63819263 63823437 63819263 ID=Msa1030030;Name=Msa1030030
chr7_1 mRNA 63819263 63823437 63819263 ID=Msa1030030-mRNA-1;Parent=Msa1030030;Name=Msa1030030-mRNA-1;_AED=0.06;_eAED=0.06;_QI=209|1|1|1|0.85|0.87|8|221|202
chr7_1 exon 63819263 63819577 63819263 ID=Msa1030030-mRNA-1:exon:13951;Parent=Msa1030030-mRNA-1
chr7_1 exon 63820730 63820833 63820730 ID=Msa1030030-mRNA-1:exon:13950;Parent=Msa1030030-mRNA-1
chr7_1 exon 63820997 63821152 63820997 ID=Msa1030030-mRNA-1:exon:13949;Parent=Msa1030030-mRNA-1
chr7_1 exon 63821247 63821318 63821247 ID=Msa1030030-mRNA-1:exon:13948;Parent=Msa1030030-mRNA-1
chr7_1 exon 63821523 63821570 63821523 ID=Msa1030030-mRNA-1:exon:13947;Parent=Msa1030030-mRNA-1
chr7_1 exon 63821654 63821701 63821654 ID=Msa1030030-mRNA-1:exon:13946;Parent=Msa1030030-mRNA-1
chr7_1 exon 63822598 63822670 63822598 ID=Msa1030030-mRNA-1:exon:13945;Parent=Msa1030030-mRNA-1
chr7_1 exon 63823215 63823437 63823215 ID=Msa1030030-mRNA-1:exon:13944;Parent=Msa1030030-mRNA-1
chr7_1 five_prime_UTR 63823229 63823437 63823229 ID=Msa1030030-mRNA-1:five_prime_utr;Parent=Msa1030030-mRNA-1
chr7_1 CDS 63823215 63823228 63823215 ID=Msa1030030-mRNA-1:cds;Parent=Msa1030030-mRNA-1
chr7_1 CDS 63822598 63822670 63822598 ID=Msa1030030-mRNA-1:cds;Parent=Msa1030030-mRNA-1
chr7_1 CDS 63821654 63821701 63821654 ID=Msa1030030-mRNA-1:cds;Parent=Msa1030030-mRNA-1
chr7_1 CDS 63821523 63821570 63821523 ID=Msa1030030-mRNA-1:cds;Parent=Msa1030030-mRNA-1
chr7_1 CDS 63821247 63821318 63821247 ID=Msa1030030-mRNA-1:cds;Parent=Msa1030030-mRNA-1
chr7_1 CDS 63820997 63821152 63820997 ID=Msa1030030-mRNA-1:cds;Parent=Msa1030030-mRNA-1
chr7_1 CDS 63820730 63820833 63820730 ID=Msa1030030-mRNA-1:cds;Parent=Msa1030030-mRNA-1
chr7_1 CDS 63819484 63819577 63819484 ID=Msa1030030-mRNA-1:cds;Parent=Msa1030030-mRNA-1
chr7_1 three_prime_UTR 63819263 63819483 63819263 ID=Msa1030030-mRNA-1:three_prime_utr;Parent=Msa1030030-mRNA-1
Gene Sequence

>Msa1030030

ATGAATCCTGAATATGATTATCTGTTTAAGCTTCTTTTGATTGGAGACTCTGGTGTTGGAAAATCATGCCTTCTGCTCAGATTTGCTGATGATTCTTACATTGACAGCTACATAAGCACCATTGGAGTTGATTTTAAAATCCGCACAGTTGAACAGGATGGGAAGACCATTAAGCTCCAAATCTGGGATACAGCTGGCCAAGAACGATTTAGGACAATCACCAGTAGCTACTACCGTGGGGCACATGGAATCATTATTGTCTATGATGTGACAGATGAAGAGAGCTTCAATAATGTGAAGCAATGGCTCAGTGAAATTGACCGCTATGCTAGTGATAATGTTAACAAGCTCTTGGTTGGCAACAAGTGCGATCTGACATCAGAGAGAGCTGTGTCATATGAAACAGCTAAAGCATTTGCAGATGAAATAGGCATACCTTTTATGGAAACAAGTGCAAAGGATTCTACAAATGTCGAACAGGCATTTATGGCAATGGCTTCTTCCATCAAGGATAGAATGGCTAGCCAACCTACAAACAATGCAAGGCCTCCAACAGTGCAGATAAGGGGACAGCCAGTTGGCCAGAAAAGTGGGTGCTGCTCATCTTAA
Protein sequence

>Msa1030030

MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKCDLTSERAVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMASSIKDRMASQPTNNARPPTVQIRGQPVGQKSGCCSS*