AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0030480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0030480 MtrunA17_Chr1g0194901 97.512 402 6 1 1 398 298 699 0.0 811
Msa0030480 MtrunA17_Chr7g0269851 78.608 388 78 2 1 383 293 680 0.0 617
Msa0030480 MtrunA17_Chr7g0275571 54.908 326 131 3 6 324 351 667 2.38e-117 357
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0030480 AT1G02660.1 69.327 401 109 5 6 398 319 713 0.0 551
Msa0030480 AT3G62590.1 63.000 400 111 4 1 395 270 637 9.56e-171 492
Msa0030480 AT3G61680.2 57.994 319 124 2 6 320 313 625 3.13e-127 381
Msa0030480 AT3G61680.1 57.994 319 124 2 6 320 313 625 3.13e-127 381
Msa0030480 AT3G61680.3 57.994 319 124 2 6 320 313 625 3.13e-127 381

Find 167 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACAAATTACCTTGATATT+TGG 0.154361 1_1:+56849164 None:intergenic
AGAAACCCTCCTTAGCATTT+TGG 0.155210 1_1:+56849247 None:intergenic
ATCCTATATCCACCATTATT+TGG 0.160237 1_1:+56848263 None:intergenic
GAGAGAGATGAATGAATATT+AGG 0.172099 1_1:+56849950 None:intergenic
GCAATTACCTCAAATTTAAT+TGG 0.213954 1_1:+56847777 None:intergenic
CCCTGCTAGGATGTTAATAT+TGG 0.229996 1_1:-56846547 Msa0030480:CDS
TACGGATCTGGTTAAGTTCT+TGG 0.252856 1_1:+56846787 None:intergenic
GTCTCTCGACGACGCCGTTT+TGG 0.268578 1_1:-56849522 Msa0030480:five_prime_UTR
AATGCTAAGGAGGGTTTCTT+TGG 0.270200 1_1:-56849243 Msa0030480:five_prime_UTR
GATGTCACACTTGGGGAGTT+TGG 0.270494 1_1:-56849198 Msa0030480:five_prime_UTR
CCTGCTAGGATGTTAATATT+GGG 0.281713 1_1:-56846546 Msa0030480:CDS
CTACTTCCTGTGATAACATT+TGG 0.282356 1_1:-56847434 Msa0030480:CDS
TGCCTTGCGGCAGAAGATTA+TGG 0.283373 1_1:+56847009 None:intergenic
AGGAGGGGCAGAGAGAGAAT+TGG 0.296623 1_1:-56849454 Msa0030480:five_prime_UTR
CAGGAAGAGAGTCCTTAAAA+AGG 0.312198 1_1:-56846623 Msa0030480:CDS
TCCACCATTATTTGGCTCCT+TGG 0.317715 1_1:+56848271 None:intergenic
TTTAGGTGAGCATGAACTTC+TGG 0.322356 1_1:+56847569 None:intergenic
TTAAGTGACCGATCTGCTTA+TGG 0.329267 1_1:-56846879 Msa0030480:CDS
CATTTCATATCATTCATCTA+AGG 0.331288 1_1:+56846505 None:intergenic
CTTGGTGAAAATTTCTCATC+TGG 0.344080 1_1:+56847032 None:intergenic
CTTGATATTTGGTATAGAAT+AGG 0.352328 1_1:+56849175 None:intergenic
GATACCCATTGGAATCTCTA+TGG 0.358600 1_1:-56849577 Msa0030480:five_prime_UTR
GGAGGGGCAGAGAGAGAATT+GGG 0.360798 1_1:-56849453 Msa0030480:five_prime_UTR
AGAGAGATGAATGAATATTA+GGG 0.364066 1_1:+56849951 None:intergenic
CATGTCATGATCTCTTTGTA+TGG 0.368198 1_1:+56846845 None:intergenic
AGCTTCTTGTCCGTGTCATT+AGG 0.369839 1_1:+56846951 None:intergenic
CTCGCATCGATTTACGGATC+TGG 0.403958 1_1:+56846775 None:intergenic
CGTGCAACTTTCCGTTTCAC+TGG 0.411226 1_1:-56847533 Msa0030480:CDS
CGTTTCACTGGACATTCCCT+TGG 0.413018 1_1:-56847521 Msa0030480:CDS
CAACGCCAGTCACCGTTCTC+TGG 0.414357 1_1:-56846657 Msa0030480:CDS
GACCGATCTGCTTATGGATC+TGG 0.419315 1_1:-56846873 Msa0030480:CDS
CCCAATATTAACATCCTAGC+AGG 0.442858 1_1:+56846546 None:intergenic
TTGATACCAGCATTGTTGTT+GGG 0.446372 1_1:-56846707 Msa0030480:CDS
TTCACGACCCACCGCACTTA+CGG 0.447728 1_1:+56849640 None:intergenic
ACATTCCCTTGGTGGAAGCT+TGG 0.448070 1_1:-56847510 Msa0030480:CDS
GACAGCAGTGGTTGCGGCAA+AGG 0.448188 1_1:-56848067 Msa0030480:CDS
ATTGTTCCTTCGATCTCCAT+TGG 0.450078 1_1:-56849704 Msa0030480:five_prime_UTR
TTCACTGGACATTCCCTTGG+TGG 0.452430 1_1:-56847518 Msa0030480:CDS
GAAACCAAGGAGCCAAATAA+TGG 0.453919 1_1:-56848275 Msa0030480:five_prime_UTR
ACGCAGAGTGGCATCTTTGA+TGG 0.454148 1_1:-56848106 Msa0030480:exon
GGGAAACTCTTAAAACATTA+CGG 0.455788 1_1:-56848392 Msa0030480:five_prime_UTR
GTTCGGAGTCATTAGCATCT+TGG 0.455806 1_1:-56847821 Msa0030480:CDS
GTTCAAGAACGTCAACTTTG+CGG 0.456069 1_1:+56846923 None:intergenic
CCTGCACGTGGCTTCGCGGC+AGG 0.457427 1_1:+56847363 None:intergenic
CACATGGTTAGCTGAATGTT+AGG 0.465272 1_1:-56846435 Msa0030480:three_prime_UTR
TTCTCTGTTATCTTCCAAAA+CGG 0.471419 1_1:+56849508 None:intergenic
AAGAATATTCCTCTACAAGC+AGG 0.475927 1_1:+56846363 None:intergenic
GTTCCTTCGATCTCCATTGG+TGG 0.483103 1_1:-56849701 Msa0030480:five_prime_UTR
ACACAAATAAATGCATGTGT+TGG 0.484143 1_1:+56846580 None:intergenic
CGCATCTACCGTAAGTGCGG+TGG 0.485121 1_1:-56849648 Msa0030480:five_prime_UTR
TGTTGGGAGGTCCATGGTAT+CGG 0.485167 1_1:-56846691 Msa0030480:CDS
TAGGGTATGGAACCTAAAAC+AGG 0.491510 1_1:+56849969 None:intergenic
GATGAATGAATATTAGGGTA+TGG 0.492669 1_1:+56849956 None:intergenic
ACTTCTTCAAATGCAGCGGC+TGG 0.497103 1_1:-56848161 Msa0030480:five_prime_UTR
AGCCAAATAATGGTGGATAT+AGG 0.497389 1_1:-56848265 Msa0030480:five_prime_UTR
CTTAATATCTCAAGTGGATG+AGG 0.501462 1_1:+56846897 None:intergenic
GTTGATACCAGCATTGTTGT+TGG 0.504284 1_1:-56846708 Msa0030480:CDS
ATTGCCTGCACGTGGCTTCG+CGG 0.504752 1_1:+56847359 None:intergenic
CCTGCCGCGAAGCCACGTGC+AGG 0.508181 1_1:-56847363 Msa0030480:CDS
GTATATATGAGGCTGCTAAA+GGG 0.510063 1_1:-56847610 Msa0030480:CDS
CACAAATAAATGCATGTGTT+GGG 0.510490 1_1:+56846581 None:intergenic
TTCAGTGACAGCAGTGGTTG+CGG 0.512338 1_1:-56848073 Msa0030480:CDS
CTCGTTCGTCACCTTGCGAA+TGG 0.517823 1_1:-56848005 Msa0030480:CDS
GGTATATATGAGGCTGCTAA+AGG 0.517913 1_1:-56847611 Msa0030480:CDS
CATTGTTGTTGGGAGGTCCA+TGG 0.518484 1_1:-56846697 Msa0030480:CDS
CAAGGGAATGTCCAGTGAAA+CGG 0.522758 1_1:+56847522 None:intergenic
CTATTCTATACCAAATATCA+AGG 0.525327 1_1:-56849174 Msa0030480:intron
AATGTTTGGAAAGGGGAACA+AGG 0.528089 1_1:-56849407 Msa0030480:five_prime_UTR
AAAATCTGAGAAAATTCCTC+AGG 0.530787 1_1:-56848324 Msa0030480:five_prime_UTR
AATCTTCTGCCGCAAGGCAG+TGG 0.532114 1_1:-56847005 Msa0030480:CDS
AAGCTACTATACACACCAAT+GGG 0.534284 1_1:-56847074 Msa0030480:CDS
CTCCTCACCGTCATCTCTAA+CGG 0.535095 1_1:+56849472 None:intergenic
CATATATACCTCTGTGCACA+AGG 0.536219 1_1:+56847624 None:intergenic
TTATGCCAGAGAACGGTGAC+TGG 0.536435 1_1:+56846652 None:intergenic
TCAAATGCAGCGGCTGGTGA+AGG 0.538184 1_1:-56848155 Msa0030480:five_prime_UTR
TTCTCTGGCATAATGAAGAC+AGG 0.544083 1_1:-56846642 Msa0030480:CDS
AGAACGTCAACTTTGCGGCT+CGG 0.546820 1_1:+56846928 None:intergenic
AGAATCAGCAATTCACCCAT+TGG 0.548209 1_1:+56847059 None:intergenic
CTGCTAGGATGTTAATATTG+GGG 0.549191 1_1:-56846545 Msa0030480:CDS
GGTTCCCCTTCCATCATGTG+TGG 0.551578 1_1:-56847413 Msa0030480:CDS
CGCCTCCACACATGATGGAA+GGG 0.552230 1_1:+56847408 None:intergenic
ATGTGAAGAATGTTTGGAAA+GGG 0.553617 1_1:-56849415 Msa0030480:five_prime_UTR
TGCGGCAGAAGATTATGGCT+TGG 0.555573 1_1:+56847014 None:intergenic
CGGTCACTTAATATCTCAAG+TGG 0.555750 1_1:+56846891 None:intergenic
CTCACCGTCATCTCTAACGG+TGG 0.557455 1_1:+56849475 None:intergenic
AGCAGTGGTTGCGGCAAAGG+AGG 0.558429 1_1:-56848064 Msa0030480:CDS
GGCAAAGGAGGAAGTAAAGC+AGG 0.560431 1_1:-56848052 Msa0030480:CDS
GGACCTCCCAACAACAATGC+TGG 0.562296 1_1:+56846701 None:intergenic
GCTGCATTTGAAGAAGTGAA+TGG 0.563038 1_1:+56848167 None:intergenic
CATGTGAAGAATGTTTGGAA+AGG 0.563671 1_1:-56849416 Msa0030480:five_prime_UTR
GTTAGAGATGACGGTGAGGA+GGG 0.565035 1_1:-56849470 Msa0030480:five_prime_UTR
ATACCAGCATTGTTGTTGGG+AGG 0.566961 1_1:-56846704 Msa0030480:CDS
GTATGCTCAGATGTCACACT+TGG 0.567630 1_1:-56849207 Msa0030480:five_prime_UTR
CAGAGAACGGTGACTGGCGT+TGG 0.568268 1_1:+56846658 None:intergenic
CTCAAGAACCCTGCTTGTAG+AGG 0.569073 1_1:-56846372 Msa0030480:three_prime_UTR
CGATCTGCTTATGGATCTGG+AGG 0.572142 1_1:-56846870 Msa0030480:CDS
TTTACTTGGTTATTGAGACA+TGG 0.572898 1_1:+56847236 None:intergenic
TTACTTGGTTATTGAGACAT+GGG 0.574179 1_1:+56847237 None:intergenic
TCTTTACTTTCGACTTCCTG+AGG 0.574252 1_1:+56848308 None:intergenic
CAAGGGAATCATGAAAGAGA+AGG 0.574584 1_1:-56849389 Msa0030480:five_prime_UTR
CGACGGAACAGAACGTTCAG+TGG 0.580188 1_1:-56849548 Msa0030480:five_prime_UTR
AGAGAAGCAAGAAGAAACCA+AGG 0.581266 1_1:-56848288 Msa0030480:five_prime_UTR
TCGCCTCCACACATGATGGA+AGG 0.582366 1_1:+56847407 None:intergenic
TCCATGGTATCGGTCAGTAT+CGG 0.583827 1_1:-56846681 Msa0030480:CDS
GGGGAACCAAATGTTATCAC+AGG 0.584190 1_1:+56847428 None:intergenic
CGTTAGAGATGACGGTGAGG+AGG 0.587487 1_1:-56849471 Msa0030480:five_prime_UTR
GCCGATACTGACCGATACCA+TGG 0.588719 1_1:+56846680 None:intergenic
GAGAGAAAAGACGCAAGGTA+TGG 0.588772 1_1:-56846755 Msa0030480:CDS
GTGTATAAAACAAGGGCACA+TGG 0.588841 1_1:-56846451 Msa0030480:three_prime_UTR
GCATTATAATTGCCTGCACG+TGG 0.590797 1_1:+56847351 None:intergenic
GAAGCTACTATACACACCAA+TGG 0.592530 1_1:-56847075 Msa0030480:CDS
TAGTGCCAAGCTTCCACCAA+GGG 0.594028 1_1:+56847505 None:intergenic
TGTGCACAGAGGTATATATG+AGG 0.594337 1_1:-56847621 Msa0030480:CDS
GACACTCTACTTGAAAAGCT+TGG 0.594758 1_1:-56847386 Msa0030480:CDS
CTCCAGATCCATAAGCAGAT+CGG 0.594796 1_1:+56846871 None:intergenic
AGCCATAATCTTCTGCCGCA+AGG 0.595034 1_1:-56847011 Msa0030480:CDS
AACGTTCTGTTCCGTCGTTG+TGG 0.595293 1_1:+56849554 None:intergenic
ATGTTTGGAAAGGGGAACAA+GGG 0.596462 1_1:-56849406 Msa0030480:five_prime_UTR
TATGCTCAGATGTCACACTT+GGG 0.597591 1_1:-56849206 Msa0030480:five_prime_UTR
ACAGGAAGTAGAGAGGTGAT+TGG 0.597627 1_1:+56847446 None:intergenic
AGTGTCGCCTCCACACATGA+TGG 0.598823 1_1:+56847403 None:intergenic
AGAAAAGACGCAAGGTATGG+TGG 0.599163 1_1:-56846752 Msa0030480:CDS
GCCTCCACACATGATGGAAG+GGG 0.599219 1_1:+56847409 None:intergenic
GTGGCCATAGAGATTCCAAT+GGG 0.600305 1_1:+56849573 None:intergenic
TCCCCTTCCATCATGTGTGG+AGG 0.601542 1_1:-56847410 Msa0030480:CDS
GTCTTCATTATGCCAGAGAA+CGG 0.604223 1_1:+56846645 None:intergenic
CGCACTTACGGTAGATGCGG+TGG 0.605825 1_1:+56849652 None:intergenic
TGCTAGGATGTTAATATTGG+GGG 0.605936 1_1:-56846544 Msa0030480:CDS
ACCAAGGAGCCAAATAATGG+TGG 0.606415 1_1:-56848272 Msa0030480:five_prime_UTR
ACTCTGCGTTCATCATGTCA+AGG 0.608150 1_1:+56848120 None:intergenic
ATTCACTTCTTCAAATGCAG+CGG 0.610395 1_1:-56848165 Msa0030480:five_prime_UTR
GCATCTACCGTAAGTGCGGT+GGG 0.614606 1_1:-56849647 Msa0030480:five_prime_UTR
GTGCAGATAAGATGCAGCAG+AGG 0.621656 1_1:+56848211 None:intergenic
AAAACCACCGTTAGAGATGA+CGG 0.627979 1_1:-56849479 Msa0030480:five_prime_UTR
GATCCACCAATGGAGATCGA+AGG 0.628096 1_1:+56849698 None:intergenic
TTAGAGATGACGGTGAGGAG+GGG 0.629402 1_1:-56849469 Msa0030480:five_prime_UTR
ACTCGTCGCGGTAGTACAAG+AGG 0.630459 1_1:+56846729 None:intergenic
AATCTCTATGGCCACAACGA+CGG 0.633455 1_1:-56849565 Msa0030480:five_prime_UTR
TGTGGCCATAGAGATTCCAA+TGG 0.646166 1_1:+56849572 None:intergenic
AGGGAAAAGTGTATAAAACA+AGG 0.646888 1_1:-56846459 Msa0030480:three_prime_UTR
TCGCAGATGAACCATTCGCA+AGG 0.648265 1_1:+56847994 None:intergenic
CACCGCATCTACCGTAAGTG+CGG 0.649836 1_1:-56849651 Msa0030480:five_prime_UTR
TGTATCTAAAGATCCACCAA+TGG 0.652056 1_1:+56849688 None:intergenic
ATGCTCAGATGTCACACTTG+GGG 0.652908 1_1:-56849205 Msa0030480:five_prime_UTR
AGAATATTCCTCTACAAGCA+GGG 0.654837 1_1:+56846364 None:intergenic
TGGATATAGGATAAGTGCAA+CGG 0.659737 1_1:-56848252 Msa0030480:five_prime_UTR
CACCGCACTTACGGTAGATG+CGG 0.662356 1_1:+56849649 None:intergenic
TTGGATGTCCTTGTGCACAG+AGG 0.663273 1_1:-56847632 Msa0030480:CDS
AGATATAGACCACTGCCTTG+CGG 0.663361 1_1:+56846996 None:intergenic
CCAATATTAACATCCTAGCA+GGG 0.667471 1_1:+56846547 None:intergenic
GTGTCATTAGGTTCTGACAA+AGG 0.671563 1_1:+56846963 None:intergenic
CATGCTCACCTAAAATCTCG+AGG 0.672833 1_1:-56847560 Msa0030480:CDS
TACTGATTCAGTGACAGCAG+TGG 0.675088 1_1:-56848079 Msa0030480:CDS
GATGCGAGAGAAAAGACGCA+AGG 0.678863 1_1:-56846760 Msa0030480:CDS
TGTTATCACAGGAAGTAGAG+AGG 0.682469 1_1:+56847439 None:intergenic
TTTGTCAGAACCTAATGACA+CGG 0.688799 1_1:-56846961 Msa0030480:CDS
ATGTTGTTGTTACCTTACGC+AGG 0.691790 1_1:+56849842 None:intergenic
GGGAAAAGTGTATAAAACAA+GGG 0.692115 1_1:-56846458 Msa0030480:three_prime_UTR
TTGACATGATGAACGCAGAG+TGG 0.700581 1_1:-56848118 Msa0030480:five_prime_UTR
TGTGAAGAATGTTTGGAAAG+GGG 0.703391 1_1:-56849414 Msa0030480:five_prime_UTR
CACCGTTAGAGATGACGGTG+AGG 0.714990 1_1:-56849474 Msa0030480:five_prime_UTR
GTAGTGCCAAGCTTCCACCA+AGG 0.715098 1_1:+56847504 None:intergenic
TCAAGTTTGTGATACTTGCG+CGG 0.721242 1_1:-56849327 Msa0030480:five_prime_UTR
ATCTGCGATGATAACCAGAG+TGG 0.733794 1_1:-56847979 Msa0030480:CDS
TAATTGCAAGAAAATGCTCG+CGG 0.749108 1_1:+56847314 None:intergenic
ATGCTGGTATCAACTCGTCG+CGG 0.755961 1_1:+56846717 None:intergenic
GCTGAGAATGATGAAAACAA+CGG 0.787436 1_1:-56849359 Msa0030480:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTGTTTTGATTTGA+TGG + chr1_1:56846438-56846457 None:intergenic 15.0%
!!! TTTTTTCTTTTCTTTGTTTT+CGG + chr1_1:56846548-56846567 None:intergenic 15.0%
!!! TTTTTAAATTTTGGATCATT+CGG - chr1_1:56847207-56847226 Msa0030480:intron 15.0%
!! TAAAATTAAAAGACAAACTT+TGG + chr1_1:56847422-56847441 None:intergenic 15.0%
!!! AAGAAAAAACATAAACTTTT+TGG + chr1_1:56849113-56849132 None:intergenic 15.0%
!!! TATGTTTTTTCTTTATTGAT+AGG - chr1_1:56849120-56849139 Msa0030480:intron 15.0%
!!! ATTCATATTTTTTATTACGA+GGG - chr1_1:56849822-56849841 Msa0030480:five_prime_UTR 15.0%
!! AAACTATGTGTTTAAAAACT+GGG - chr1_1:56846577-56846596 Msa0030480:CDS 20.0%
!! AAACAAATTACCTTGATATT+TGG + chr1_1:56847143-56847162 None:intergenic 20.0%
!!! GCTTTATGGTTTTTAAATTT+TGG - chr1_1:56847198-56847217 Msa0030480:intron 20.0%
!!! TATTTTGTTTTTATGTGATC+TGG - chr1_1:56847313-56847332 Msa0030480:CDS 20.0%
!!! TTTGTCTTTTAATTTTAGCA+TGG - chr1_1:56847425-56847444 Msa0030480:CDS 20.0%
!!! TACAAGATTTTTTGTTATTC+AGG - chr1_1:56848348-56848367 Msa0030480:five_prime_UTR 20.0%
!!! GATTCATATTTTTTATTACG+AGG - chr1_1:56849821-56849840 Msa0030480:five_prime_UTR 20.0%
! AGAGAGATGAATGAATATTA+GGG + chr1_1:56846356-56846375 None:intergenic 25.0%
!! AAGAAAAGAAAAAAGCACAA+TGG - chr1_1:56846554-56846573 Msa0030480:CDS 25.0%
! GAAACTATGTGTTTAAAAAC+TGG - chr1_1:56846576-56846595 Msa0030480:CDS 25.0%
!! GAAAACAATGATTTTTGTGA+AGG + chr1_1:56846693-56846712 None:intergenic 25.0%
!! ATTTTCATTTAGATACCCAT+TGG - chr1_1:56846716-56846735 Msa0030480:CDS 25.0%
! CTTGATATTTGGTATAGAAT+AGG + chr1_1:56847132-56847151 None:intergenic 25.0%
! CTATTCTATACCAAATATCA+AGG - chr1_1:56847130-56847149 Msa0030480:intron 25.0%
!!! TTGTTTTTACTTGTGCTTTA+TGG - chr1_1:56847184-56847203 Msa0030480:intron 25.0%
!!! TTTTAGTTGATTCTTAGAGA+TGG - chr1_1:56847246-56847265 Msa0030480:CDS 25.0%
! GTTTGTAAATTGTTCATTCA+TGG - chr1_1:56847272-56847291 Msa0030480:CDS 25.0%
! ATCTTCAACTAATCAATGTT+TGG + chr1_1:56847349-56847368 None:intergenic 25.0%
! AGAAAGAAAGAAACAAATCA+AGG + chr1_1:56847373-56847392 None:intergenic 25.0%
!!! TGATTTGTTTCTTTCTTTCT+TGG - chr1_1:56847373-56847392 Msa0030480:CDS 25.0%
!!! TATGGATTGGTGTATTTATA+AGG - chr1_1:56847536-56847555 Msa0030480:CDS 25.0%
!! CTATAATCTGAATCTTTTGT+TGG - chr1_1:56847612-56847631 Msa0030480:CDS 25.0%
!!! AGTGTGATTTTTTACAACTA+TGG - chr1_1:56847716-56847735 Msa0030480:intron 25.0%
! TGGAAATCAGAACATATAAT+AGG + chr1_1:56847842-56847861 None:intergenic 25.0%
!! TTAGTTTCATATGCATTTTG+TGG + chr1_1:56847862-56847881 None:intergenic 25.0%
! TGAAATTTGATTATTTAGCC+AGG - chr1_1:56847891-56847910 Msa0030480:intron 25.0%
! GAAATTTGATTATTTAGCCA+GGG - chr1_1:56847892-56847911 Msa0030480:intron 25.0%
!!! AGATTTTTTGTTATTCAGGT+AGG - chr1_1:56848352-56848371 Msa0030480:five_prime_UTR 25.0%
!!! GATTTTTTGTTATTCAGGTA+GGG - chr1_1:56848353-56848372 Msa0030480:five_prime_UTR 25.0%
!!! ATTTTTTGTTATTCAGGTAG+GGG - chr1_1:56848354-56848373 Msa0030480:five_prime_UTR 25.0%
!! TTGATAAAGCGTTATTATGT+AGG - chr1_1:56848460-56848479 Msa0030480:intron 25.0%
!! TGATAAAGCGTTATTATGTA+GGG - chr1_1:56848461-56848480 Msa0030480:intron 25.0%
!! ATTTAATTGGCTCAAAAAGT+AGG + chr1_1:56848517-56848536 None:intergenic 25.0%
!! TTTTGAGCCAATTAAATTTG+AGG - chr1_1:56848520-56848539 Msa0030480:intron 25.0%
! GCAATTACCTCAAATTTAAT+TGG + chr1_1:56848530-56848549 None:intergenic 25.0%
!!! TACACATTTTTTTTTACCCA+GGG - chr1_1:56848648-56848667 Msa0030480:intron 25.0%
! CATTTCATATCATTCATCTA+AGG + chr1_1:56849802-56849821 None:intergenic 25.0%
!!! ATATTTTTTATTACGAGGGA+GGG - chr1_1:56849826-56849845 Msa0030480:five_prime_UTR 25.0%
! AAAATTCGTTCACCTGTTTT+AGG - chr1_1:56846323-56846342 Msa0030480:three_prime_UTR 30.0%
GATGAATGAATATTAGGGTA+TGG + chr1_1:56846351-56846370 None:intergenic 30.0%
GAGAGAGATGAATGAATATT+AGG + chr1_1:56846357-56846376 None:intergenic 30.0%
AAAAAAAAACAACCTGCGTA+AGG - chr1_1:56846450-56846469 Msa0030480:three_prime_UTR 30.0%
TTCTCTGTTATCTTCCAAAA+CGG + chr1_1:56846799-56846818 None:intergenic 30.0%
! TTTTGCATGTGAAGAATGTT+TGG - chr1_1:56846883-56846902 Msa0030480:CDS 30.0%
ATGTGAAGAATGTTTGGAAA+GGG - chr1_1:56846889-56846908 Msa0030480:CDS 30.0%
! ACTCATTTTCCAAAATGCTA+AGG - chr1_1:56847048-56847067 Msa0030480:CDS 30.0%
! ATTTTCCAAAATGCTAAGGA+GGG - chr1_1:56847052-56847071 Msa0030480:CDS 30.0%
! TTGTTCATTCATGGTTTTTG+AGG - chr1_1:56847281-56847300 Msa0030480:CDS 30.0%
ATTTACCATGTGTTGGATTA+TGG - chr1_1:56847518-56847537 Msa0030480:CDS 30.0%
!!! TAAGGTTTTAATTCAAACCC+TGG - chr1_1:56847554-56847573 Msa0030480:CDS 30.0%
!!! AAGGTTTTAATTCAAACCCT+GGG - chr1_1:56847555-56847574 Msa0030480:CDS 30.0%
TTATGTTAGGTGATGATCTT+TGG - chr1_1:56847751-56847770 Msa0030480:intron 30.0%
! GCATTTTTGCGATTGAAATT+TGG - chr1_1:56847788-56847807 Msa0030480:CDS 30.0%
!!! TAATGTTTTAAGAGTTTCCC+TGG + chr1_1:56847912-56847931 None:intergenic 30.0%
GGGAAACTCTTAAAACATTA+CGG - chr1_1:56847912-56847931 Msa0030480:intron 30.0%
ATCGCTAGAGAAAAAAGAAT+TGG - chr1_1:56847953-56847972 Msa0030480:intron 30.0%
AAAATCTGAGAAAATTCCTC+AGG - chr1_1:56847980-56847999 Msa0030480:CDS 30.0%
ATCCTATATCCACCATTATT+TGG + chr1_1:56848044-56848063 None:intergenic 30.0%
!!! GTACACATTTTTTTTTACCC+AGG - chr1_1:56848647-56848666 Msa0030480:intron 30.0%
!!! ATTTTTTTTTACCCAGGGTT+TGG - chr1_1:56848653-56848672 Msa0030480:intron 30.0%
!!! CCTTTAAGATTTTTGCAACA+TGG + chr1_1:56849022-56849041 None:intergenic 30.0%
CCATGTTGCAAAAATCTTAA+AGG - chr1_1:56849019-56849038 Msa0030480:intron 30.0%
TTACTTGGTTATTGAGACAT+GGG + chr1_1:56849070-56849089 None:intergenic 30.0%
TTTACTTGGTTATTGAGACA+TGG + chr1_1:56849071-56849090 None:intergenic 30.0%
! CATAAACTTTTTGGATAAGC+AGG + chr1_1:56849104-56849123 None:intergenic 30.0%
CACAAATAAATGCATGTGTT+GGG + chr1_1:56849726-56849745 None:intergenic 30.0%
ACACAAATAAATGCATGTGT+TGG + chr1_1:56849727-56849746 None:intergenic 30.0%
!!! CATATTTTTTATTACGAGGG+AGG - chr1_1:56849825-56849844 Msa0030480:five_prime_UTR 30.0%
! AGGGAAAAGTGTATAAAACA+AGG - chr1_1:56849845-56849864 Msa0030480:five_prime_UTR 30.0%
! GGGAAAAGTGTATAAAACAA+GGG - chr1_1:56849846-56849865 Msa0030480:five_prime_UTR 30.0%
TGTATCTAAAGATCCACCAA+TGG + chr1_1:56846619-56846638 None:intergenic 35.0%
CATGTGAAGAATGTTTGGAA+AGG - chr1_1:56846888-56846907 Msa0030480:CDS 35.0%
TGTGAAGAATGTTTGGAAAG+GGG - chr1_1:56846890-56846909 Msa0030480:CDS 35.0%
GCTGAGAATGATGAAAACAA+CGG - chr1_1:56846945-56846964 Msa0030480:CDS 35.0%
! CATTTTCCAAAATGCTAAGG+AGG - chr1_1:56847051-56847070 Msa0030480:CDS 35.0%
! TCTTTCTTTCTTGGCTTGAA+TGG - chr1_1:56847382-56847401 Msa0030480:CDS 35.0%
! CTTTCTTTCTTGGCTTGAAT+GGG - chr1_1:56847383-56847402 Msa0030480:CDS 35.0%
! TTTCTTTCTTGGCTTGAATG+GGG - chr1_1:56847384-56847403 Msa0030480:CDS 35.0%
! GCATTTTGCCGTTATATCAA+AGG - chr1_1:56847481-56847500 Msa0030480:intron 35.0%
ACCGCAAACCTTTGATATAA+CGG + chr1_1:56847492-56847511 None:intergenic 35.0%
!! TTTTAATTCAAACCCTGGGT+AGG - chr1_1:56847559-56847578 Msa0030480:CDS 35.0%
TTTAATTCAAACCCTGGGTA+GGG - chr1_1:56847560-56847579 Msa0030480:CDS 35.0%
CTTAAACTTGTCGAGACAAT+GGG - chr1_1:56847588-56847607 Msa0030480:CDS 35.0%
TTAAACTTGTCGAGACAATG+GGG - chr1_1:56847589-56847608 Msa0030480:CDS 35.0%
! GTTTTATCCAAAGCTAAACG+AGG + chr1_1:56847676-56847695 None:intergenic 35.0%
GAATGCTCATTGCTTATGTT+AGG - chr1_1:56847738-56847757 Msa0030480:intron 35.0%
!! AGCCAAATAATGGTGGATAT+AGG - chr1_1:56848039-56848058 Msa0030480:CDS 35.0%
TGGATATAGGATAAGTGCAA+CGG - chr1_1:56848052-56848071 Msa0030480:CDS 35.0%
ATTCACTTCTTCAAATGCAG+CGG - chr1_1:56848139-56848158 Msa0030480:five_prime_UTR 35.0%
CAAAAAATCTTGTACCACTC+TGG + chr1_1:56848342-56848361 None:intergenic 35.0%
AAGCGTTATTATGTAGGGTT+CGG - chr1_1:56848466-56848485 Msa0030480:intron 35.0%
TTGCTGATATTGCAGACTAT+AGG - chr1_1:56848546-56848565 Msa0030480:intron 35.0%
! TTTTTCGTCACTATTGTCGA+AGG - chr1_1:56848570-56848589 Msa0030480:intron 35.0%
! TTTTCGTCACTATTGTCGAA+GGG - chr1_1:56848571-56848590 Msa0030480:intron 35.0%
GTATATATGAGGCTGCTAAA+GGG - chr1_1:56848694-56848713 Msa0030480:intron 35.0%
CTACTTCCTGTGATAACATT+TGG - chr1_1:56848870-56848889 Msa0030480:intron 35.0%
TAATTGCAAGAAAATGCTCG+CGG + chr1_1:56848993-56849012 None:intergenic 35.0%
! AGATTTTTGCAACATGGTCA+GGG + chr1_1:56849016-56849035 None:intergenic 35.0%
! AAGATTTTTGCAACATGGTC+AGG + chr1_1:56849017-56849036 None:intergenic 35.0%
AAGCTACTATACACACCAAT+GGG - chr1_1:56849230-56849249 Msa0030480:five_prime_UTR 35.0%
CTTGGTGAAAATTTCTCATC+TGG + chr1_1:56849275-56849294 None:intergenic 35.0%
TTTGTCAGAACCTAATGACA+CGG - chr1_1:56849343-56849362 Msa0030480:five_prime_UTR 35.0%
CTTAATATCTCAAGTGGATG+AGG + chr1_1:56849410-56849429 None:intergenic 35.0%
CATGTCATGATCTCTTTGTA+TGG + chr1_1:56849462-56849481 None:intergenic 35.0%
!!! TTTTCTCTCGCATCGATTTA+CGG + chr1_1:56849538-56849557 None:intergenic 35.0%
! TTGATACCAGCATTGTTGTT+GGG - chr1_1:56849597-56849616 Msa0030480:five_prime_UTR 35.0%
AGTCCTTAAAAAGGTTTAGC+AGG - chr1_1:56849690-56849709 Msa0030480:five_prime_UTR 35.0%
! AAGCCTGCTAAACCTTTTTA+AGG + chr1_1:56849696-56849715 None:intergenic 35.0%
CCAATATTAACATCCTAGCA+GGG + chr1_1:56849760-56849779 None:intergenic 35.0%
CCTGCTAGGATGTTAATATT+GGG - chr1_1:56849758-56849777 Msa0030480:five_prime_UTR 35.0%
CTGCTAGGATGTTAATATTG+GGG - chr1_1:56849759-56849778 Msa0030480:five_prime_UTR 35.0%
TGCTAGGATGTTAATATTGG+GGG - chr1_1:56849760-56849779 Msa0030480:five_prime_UTR 35.0%
AGAATATTCCTCTACAAGCA+GGG + chr1_1:56849943-56849962 None:intergenic 35.0%
AAGAATATTCCTCTACAAGC+AGG + chr1_1:56849944-56849963 None:intergenic 35.0%
TAGGGTATGGAACCTAAAAC+AGG + chr1_1:56846338-56846357 None:intergenic 40.0%
! ATGTTGTTGTTACCTTACGC+AGG + chr1_1:56846465-56846484 None:intergenic 40.0%
ATTGTTCCTTCGATCTCCAT+TGG - chr1_1:56846600-56846619 Msa0030480:CDS 40.0%
GATACCCATTGGAATCTCTA+TGG - chr1_1:56846727-56846746 Msa0030480:CDS 40.0%
AAAACCACCGTTAGAGATGA+CGG - chr1_1:56846825-56846844 Msa0030480:CDS 40.0%
AATGTTTGGAAAGGGGAACA+AGG - chr1_1:56846897-56846916 Msa0030480:CDS 40.0%
ATGTTTGGAAAGGGGAACAA+GGG - chr1_1:56846898-56846917 Msa0030480:CDS 40.0%
CAAGGGAATCATGAAAGAGA+AGG - chr1_1:56846915-56846934 Msa0030480:CDS 40.0%
TCAAGTTTGTGATACTTGCG+CGG - chr1_1:56846977-56846996 Msa0030480:CDS 40.0%
! AGAAACCCTCCTTAGCATTT+TGG + chr1_1:56847060-56847079 None:intergenic 40.0%
AATGCTAAGGAGGGTTTCTT+TGG - chr1_1:56847061-56847080 Msa0030480:CDS 40.0%
TATGCTCAGATGTCACACTT+GGG - chr1_1:56847098-56847117 Msa0030480:intron 40.0%
GCCGTTATATCAAAGGTTTG+CGG - chr1_1:56847488-56847507 Msa0030480:intron 40.0%
TTGCGCAATTTACCATGTGT+TGG - chr1_1:56847511-56847530 Msa0030480:CDS 40.0%
CCAATCCATAATCCAACACA+TGG + chr1_1:56847526-56847545 None:intergenic 40.0%
CCATGTGTTGGATTATGGAT+TGG - chr1_1:56847523-56847542 Msa0030480:CDS 40.0%
GCTTAAACTTGTCGAGACAA+TGG - chr1_1:56847587-56847606 Msa0030480:CDS 40.0%
! TCTTAGTCCTCGTTTAGCTT+TGG - chr1_1:56847666-56847685 Msa0030480:intron 40.0%
TTAGGTGATGATCTTTGGCT+TGG - chr1_1:56847756-56847775 Msa0030480:intron 40.0%
! TAGGTGATGATCTTTGGCTT+GGG - chr1_1:56847757-56847776 Msa0030480:intron 40.0%
!! ATGATCTTTGGCTTGGGATT+CGG - chr1_1:56847763-56847782 Msa0030480:intron 40.0%
TCTTTACTTTCGACTTCCTG+AGG + chr1_1:56847999-56848018 None:intergenic 40.0%
AGAGAAGCAAGAAGAAACCA+AGG - chr1_1:56848016-56848035 Msa0030480:CDS 40.0%
GAAACCAAGGAGCCAAATAA+TGG - chr1_1:56848029-56848048 Msa0030480:CDS 40.0%
GCTGCATTTGAAGAAGTGAA+TGG + chr1_1:56848140-56848159 None:intergenic 40.0%
TTTCGTCACTATTGTCGAAG+GGG - chr1_1:56848572-56848591 Msa0030480:intron 40.0%
CATATATACCTCTGTGCACA+AGG + chr1_1:56848683-56848702 None:intergenic 40.0%
! TGTGCACAGAGGTATATATG+AGG - chr1_1:56848683-56848702 Msa0030480:intron 40.0%
GGTATATATGAGGCTGCTAA+AGG - chr1_1:56848693-56848712 Msa0030480:intron 40.0%
TTTAGGTGAGCATGAACTTC+TGG + chr1_1:56848738-56848757 None:intergenic 40.0%
TGTTATCACAGGAAGTAGAG+AGG + chr1_1:56848868-56848887 None:intergenic 40.0%
GACACTCTACTTGAAAAGCT+TGG - chr1_1:56848918-56848937 Msa0030480:intron 40.0%
! TTTTTGGATAAGCAGGAGTG+CGG + chr1_1:56849097-56849116 None:intergenic 40.0%
GAAGCTACTATACACACCAA+TGG - chr1_1:56849229-56849248 Msa0030480:five_prime_UTR 40.0%
AGAATCAGCAATTCACCCAT+TGG + chr1_1:56849248-56849267 None:intergenic 40.0%
! GTGTCATTAGGTTCTGACAA+AGG + chr1_1:56849344-56849363 None:intergenic 40.0%
GTTCAAGAACGTCAACTTTG+CGG + chr1_1:56849384-56849403 None:intergenic 40.0%
CGGTCACTTAATATCTCAAG+TGG + chr1_1:56849416-56849435 None:intergenic 40.0%
TTAAGTGACCGATCTGCTTA+TGG - chr1_1:56849425-56849444 Msa0030480:five_prime_UTR 40.0%
TACGGATCTGGTTAAGTTCT+TGG + chr1_1:56849520-56849539 None:intergenic 40.0%
GTTGATACCAGCATTGTTGT+TGG - chr1_1:56849596-56849615 Msa0030480:five_prime_UTR 40.0%
GTCTTCATTATGCCAGAGAA+CGG + chr1_1:56849662-56849681 None:intergenic 40.0%
TTCTCTGGCATAATGAAGAC+AGG - chr1_1:56849662-56849681 Msa0030480:five_prime_UTR 40.0%
CAGGAAGAGAGTCCTTAAAA+AGG - chr1_1:56849681-56849700 Msa0030480:five_prime_UTR 40.0%
!!! TGTTGCTTTTTTTCCCTGCT+AGG - chr1_1:56849744-56849763 Msa0030480:five_prime_UTR 40.0%
CCCTGCTAGGATGTTAATAT+TGG - chr1_1:56849757-56849776 Msa0030480:five_prime_UTR 40.0%
CCCAATATTAACATCCTAGC+AGG + chr1_1:56849761-56849780 None:intergenic 40.0%
! GTGTATAAAACAAGGGCACA+TGG - chr1_1:56849853-56849872 Msa0030480:five_prime_UTR 40.0%
! CACATGGTTAGCTGAATGTT+AGG - chr1_1:56849869-56849888 Msa0030480:five_prime_UTR 40.0%
GTGGCCATAGAGATTCCAAT+GGG + chr1_1:56846734-56846753 None:intergenic 45.0%
TGTGGCCATAGAGATTCCAA+TGG + chr1_1:56846735-56846754 None:intergenic 45.0%
AATCTCTATGGCCACAACGA+CGG - chr1_1:56846739-56846758 Msa0030480:CDS 45.0%
GTATGCTCAGATGTCACACT+TGG - chr1_1:56847097-56847116 Msa0030480:intron 45.0%
ATGCTCAGATGTCACACTTG+GGG - chr1_1:56847099-56847118 Msa0030480:intron 45.0%
TTTAAGCGAAACCCTACCCA+GGG + chr1_1:56847574-56847593 None:intergenic 45.0%
ACCAAGGAGCCAAATAATGG+TGG - chr1_1:56848032-56848051 Msa0030480:CDS 45.0%
! TCCACCATTATTTGGCTCCT+TGG + chr1_1:56848036-56848055 None:intergenic 45.0%
ACTCTGCGTTCATCATGTCA+AGG + chr1_1:56848187-56848206 None:intergenic 45.0%
TTGACATGATGAACGCAGAG+TGG - chr1_1:56848186-56848205 Msa0030480:five_prime_UTR 45.0%
!! TACTGATTCAGTGACAGCAG+TGG - chr1_1:56848225-56848244 Msa0030480:five_prime_UTR 45.0%
ATCTGCGATGATAACCAGAG+TGG - chr1_1:56848325-56848344 Msa0030480:five_prime_UTR 45.0%
GTTCGGAGTCATTAGCATCT+TGG - chr1_1:56848483-56848502 Msa0030480:intron 45.0%
TTCGTCACTATTGTCGAAGG+GGG - chr1_1:56848573-56848592 Msa0030480:intron 45.0%
CATGCTCACCTAAAATCTCG+AGG - chr1_1:56848744-56848763 Msa0030480:intron 45.0%
! CACGAGAACCTCGAGATTTT+AGG + chr1_1:56848755-56848774 None:intergenic 45.0%
CAAGGGAATGTCCAGTGAAA+CGG + chr1_1:56848785-56848804 None:intergenic 45.0%
ACAGGAAGTAGAGAGGTGAT+TGG + chr1_1:56848861-56848880 None:intergenic 45.0%
GGGGAACCAAATGTTATCAC+AGG + chr1_1:56848879-56848898 None:intergenic 45.0%
GCATTATAATTGCCTGCACG+TGG + chr1_1:56848956-56848975 None:intergenic 45.0%
!! TTTTGGATAAGCAGGAGTGC+GGG + chr1_1:56849096-56849115 None:intergenic 45.0%
AGATATAGACCACTGCCTTG+CGG + chr1_1:56849311-56849330 None:intergenic 45.0%
! AGCTTCTTGTCCGTGTCATT+AGG + chr1_1:56849356-56849375 None:intergenic 45.0%
CTCCAGATCCATAAGCAGAT+CGG + chr1_1:56849436-56849455 None:intergenic 45.0%
GAGAGAAAAGACGCAAGGTA+TGG - chr1_1:56849549-56849568 Msa0030480:five_prime_UTR 45.0%
AGAAAAGACGCAAGGTATGG+TGG - chr1_1:56849552-56849571 Msa0030480:five_prime_UTR 45.0%
! ATACCAGCATTGTTGTTGGG+AGG - chr1_1:56849600-56849619 Msa0030480:five_prime_UTR 45.0%
!! TCCATGGTATCGGTCAGTAT+CGG - chr1_1:56849623-56849642 Msa0030480:five_prime_UTR 45.0%
!! GATATATAAATTATATTATT+TGG - chr1_1:56848397-56848416 Msa0030480:five_prime_UTR 5.0%
GTTCCTTCGATCTCCATTGG+TGG - chr1_1:56846603-56846622 Msa0030480:CDS 50.0%
GATCCACCAATGGAGATCGA+AGG + chr1_1:56846609-56846628 None:intergenic 50.0%
AACGTTCTGTTCCGTCGTTG+TGG + chr1_1:56846753-56846772 None:intergenic 50.0%
CTCCTCACCGTCATCTCTAA+CGG + chr1_1:56846835-56846854 None:intergenic 50.0%
! GTTAGAGATGACGGTGAGGA+GGG - chr1_1:56846834-56846853 Msa0030480:CDS 50.0%
! TTAGAGATGACGGTGAGGAG+GGG - chr1_1:56846835-56846854 Msa0030480:CDS 50.0%
GATGTCACACTTGGGGAGTT+TGG - chr1_1:56847106-56847125 Msa0030480:intron 50.0%
! CTTTCTTGGCTTGAATGGGG+TGG - chr1_1:56847387-56847406 Msa0030480:CDS 50.0%
GTTTAAGCGAAACCCTACCC+AGG + chr1_1:56847575-56847594 None:intergenic 50.0%
GTGCAGATAAGATGCAGCAG+AGG + chr1_1:56848096-56848115 None:intergenic 50.0%
ACTTCTTCAAATGCAGCGGC+TGG - chr1_1:56848143-56848162 Msa0030480:five_prime_UTR 50.0%
ACGCAGAGTGGCATCTTTGA+TGG - chr1_1:56848198-56848217 Msa0030480:five_prime_UTR 50.0%
TTCAGTGACAGCAGTGGTTG+CGG - chr1_1:56848231-56848250 Msa0030480:five_prime_UTR 50.0%
GGCAAAGGAGGAAGTAAAGC+AGG - chr1_1:56848252-56848271 Msa0030480:five_prime_UTR 50.0%
TCGCAGATGAACCATTCGCA+AGG + chr1_1:56848313-56848332 None:intergenic 50.0%
TCGTCACTATTGTCGAAGGG+GGG - chr1_1:56848574-56848593 Msa0030480:intron 50.0%
CACAAGGACATCCAAACCCT+GGG + chr1_1:56848667-56848686 None:intergenic 50.0%
TTGGATGTCCTTGTGCACAG+AGG - chr1_1:56848672-56848691 Msa0030480:intron 50.0%
CGTGCAACTTTCCGTTTCAC+TGG - chr1_1:56848771-56848790 Msa0030480:intron 50.0%
CGTTTCACTGGACATTCCCT+TGG - chr1_1:56848783-56848802 Msa0030480:intron 50.0%
TTCACTGGACATTCCCTTGG+TGG - chr1_1:56848786-56848805 Msa0030480:intron 50.0%
ACATTCCCTTGGTGGAAGCT+TGG - chr1_1:56848794-56848813 Msa0030480:intron 50.0%
TAGTGCCAAGCTTCCACCAA+GGG + chr1_1:56848802-56848821 None:intergenic 50.0%
TGCGGCAGAAGATTATGGCT+TGG + chr1_1:56849293-56849312 None:intergenic 50.0%
AGCCATAATCTTCTGCCGCA+AGG - chr1_1:56849293-56849312 Msa0030480:five_prime_UTR 50.0%
TGCCTTGCGGCAGAAGATTA+TGG + chr1_1:56849298-56849317 None:intergenic 50.0%
AGAACGTCAACTTTGCGGCT+CGG + chr1_1:56849379-56849398 None:intergenic 50.0%
GACCGATCTGCTTATGGATC+TGG - chr1_1:56849431-56849450 Msa0030480:five_prime_UTR 50.0%
CGATCTGCTTATGGATCTGG+AGG - chr1_1:56849434-56849453 Msa0030480:five_prime_UTR 50.0%
!! CTCGCATCGATTTACGGATC+TGG + chr1_1:56849532-56849551 None:intergenic 50.0%
GATGCGAGAGAAAAGACGCA+AGG - chr1_1:56849544-56849563 Msa0030480:five_prime_UTR 50.0%
ATGCTGGTATCAACTCGTCG+CGG + chr1_1:56849590-56849609 None:intergenic 50.0%
! CATTGTTGTTGGGAGGTCCA+TGG - chr1_1:56849607-56849626 Msa0030480:five_prime_UTR 50.0%
TGTTGGGAGGTCCATGGTAT+CGG - chr1_1:56849613-56849632 Msa0030480:five_prime_UTR 50.0%
TTATGCCAGAGAACGGTGAC+TGG + chr1_1:56849655-56849674 None:intergenic 50.0%
CTCAAGAACCCTGCTTGTAG+AGG - chr1_1:56849932-56849951 Msa0030480:intron 50.0%
CACCGCATCTACCGTAAGTG+CGG - chr1_1:56846653-56846672 Msa0030480:CDS 55.0%
CACCGCACTTACGGTAGATG+CGG + chr1_1:56846658-56846677 None:intergenic 55.0%
GCATCTACCGTAAGTGCGGT+GGG - chr1_1:56846657-56846676 Msa0030480:CDS 55.0%
TTCACGACCCACCGCACTTA+CGG + chr1_1:56846667-56846686 None:intergenic 55.0%
CGACGGAACAGAACGTTCAG+TGG - chr1_1:56846756-56846775 Msa0030480:CDS 55.0%
CTCACCGTCATCTCTAACGG+TGG + chr1_1:56846832-56846851 None:intergenic 55.0%
! CACCGTTAGAGATGACGGTG+AGG - chr1_1:56846830-56846849 Msa0030480:CDS 55.0%
! CGTTAGAGATGACGGTGAGG+AGG - chr1_1:56846833-56846852 Msa0030480:CDS 55.0%
AGGAGGGGCAGAGAGAGAAT+TGG - chr1_1:56846850-56846869 Msa0030480:CDS 55.0%
GGAGGGGCAGAGAGAGAATT+GGG - chr1_1:56846851-56846870 Msa0030480:CDS 55.0%
TCAAATGCAGCGGCTGGTGA+AGG - chr1_1:56848149-56848168 Msa0030480:five_prime_UTR 55.0%
CTCGTTCGTCACCTTGCGAA+TGG - chr1_1:56848299-56848318 Msa0030480:five_prime_UTR 55.0%
GCACAAGGACATCCAAACCC+TGG + chr1_1:56848668-56848687 None:intergenic 55.0%
GTAGTGCCAAGCTTCCACCA+AGG + chr1_1:56848803-56848822 None:intergenic 55.0%
GGTTCCCCTTCCATCATGTG+TGG - chr1_1:56848891-56848910 Msa0030480:intron 55.0%
TCCCCTTCCATCATGTGTGG+AGG - chr1_1:56848894-56848913 Msa0030480:intron 55.0%
! GCCTCCACACATGATGGAAG+GGG + chr1_1:56848898-56848917 None:intergenic 55.0%
! CGCCTCCACACATGATGGAA+GGG + chr1_1:56848899-56848918 None:intergenic 55.0%
! TCGCCTCCACACATGATGGA+AGG + chr1_1:56848900-56848919 None:intergenic 55.0%
AGTGTCGCCTCCACACATGA+TGG + chr1_1:56848904-56848923 None:intergenic 55.0%
! CAGGAGTGCGGGACTTTACT+TGG + chr1_1:56849085-56849104 None:intergenic 55.0%
AATCTTCTGCCGCAAGGCAG+TGG - chr1_1:56849299-56849318 Msa0030480:five_prime_UTR 55.0%
ACTCGTCGCGGTAGTACAAG+AGG + chr1_1:56849578-56849597 None:intergenic 55.0%
GGACCTCCCAACAACAATGC+TGG + chr1_1:56849606-56849625 None:intergenic 55.0%
GCCGATACTGACCGATACCA+TGG + chr1_1:56849627-56849646 None:intergenic 55.0%
CGCACTTACGGTAGATGCGG+TGG + chr1_1:56846655-56846674 None:intergenic 60.0%
CGCATCTACCGTAAGTGCGG+TGG - chr1_1:56846656-56846675 Msa0030480:CDS 60.0%
! GTCTCTCGACGACGCCGTTT+TGG - chr1_1:56846782-56846801 Msa0030480:CDS 60.0%
GACAGCAGTGGTTGCGGCAA+AGG - chr1_1:56848237-56848256 Msa0030480:five_prime_UTR 60.0%
AGCAGTGGTTGCGGCAAAGG+AGG - chr1_1:56848240-56848259 Msa0030480:five_prime_UTR 60.0%
ATTGCCTGCACGTGGCTTCG+CGG + chr1_1:56848948-56848967 None:intergenic 60.0%
CAGAGAACGGTGACTGGCGT+TGG + chr1_1:56849649-56849668 None:intergenic 60.0%
CAACGCCAGTCACCGTTCTC+TGG - chr1_1:56849647-56849666 Msa0030480:five_prime_UTR 60.0%
CCTGCACGTGGCTTCGCGGC+AGG + chr1_1:56848944-56848963 None:intergenic 75.0%
CCTGCCGCGAAGCCACGTGC+AGG - chr1_1:56848941-56848960 Msa0030480:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 56846323 56850003 56846323 ID=Msa0030480;Name=Msa0030480
chr1_1 mRNA 56846323 56850003 56846323 ID=Msa0030480-mRNA-1;Parent=Msa0030480;Name=Msa0030480-mRNA-1;_AED=0.04;_eAED=0.04;_QI=1117|0.83|0.71|1|0.66|0.28|7|195|398
chr1_1 exon 56846323 56847096 56846323 ID=Msa0030480-mRNA-1:exon:17063;Parent=Msa0030480-mRNA-1
chr1_1 exon 56847241 56847478 56847241 ID=Msa0030480-mRNA-1:exon:17062;Parent=Msa0030480-mRNA-1
chr1_1 exon 56847491 56847657 56847491 ID=Msa0030480-mRNA-1:exon:17061;Parent=Msa0030480-mRNA-1
chr1_1 exon 56847785 56847844 56847785 ID=Msa0030480-mRNA-1:exon:17060;Parent=Msa0030480-mRNA-1
chr1_1 exon 56847957 56848417 56847957 ID=Msa0030480-mRNA-1:exon:17059;Parent=Msa0030480-mRNA-1
chr1_1 exon 56849175 56849932 56849175 ID=Msa0030480-mRNA-1:exon:17058;Parent=Msa0030480-mRNA-1
chr1_1 exon 56849953 56850003 56849953 ID=Msa0030480-mRNA-1:exon:17057;Parent=Msa0030480-mRNA-1
chr1_1 five_prime_UTR 56849953 56850003 56849953 ID=Msa0030480-mRNA-1:five_prime_utr;Parent=Msa0030480-mRNA-1
chr1_1 five_prime_UTR 56849175 56849932 56849175 ID=Msa0030480-mRNA-1:five_prime_utr;Parent=Msa0030480-mRNA-1
chr1_1 five_prime_UTR 56848110 56848417 56848110 ID=Msa0030480-mRNA-1:five_prime_utr;Parent=Msa0030480-mRNA-1
chr1_1 CDS 56847957 56848109 56847957 ID=Msa0030480-mRNA-1:cds;Parent=Msa0030480-mRNA-1
chr1_1 CDS 56847785 56847844 56847785 ID=Msa0030480-mRNA-1:cds;Parent=Msa0030480-mRNA-1
chr1_1 CDS 56847491 56847657 56847491 ID=Msa0030480-mRNA-1:cds;Parent=Msa0030480-mRNA-1
chr1_1 CDS 56847241 56847478 56847241 ID=Msa0030480-mRNA-1:cds;Parent=Msa0030480-mRNA-1
chr1_1 CDS 56846518 56847096 56846518 ID=Msa0030480-mRNA-1:cds;Parent=Msa0030480-mRNA-1
chr1_1 three_prime_UTR 56846323 56846517 56846323 ID=Msa0030480-mRNA-1:three_prime_utr;Parent=Msa0030480-mRNA-1
Gene Sequence

>Msa0030480

ATGGCGACTACTGATTCAGTGACAGCAGTGGTTGCGGCAAAGGAGGAAGTAAAGCAGGCTGTTGCAGATGATCTAAACTCAACTCGTTCGTCACCTTGCGAATGGTTCATCTGCGATGATAACCAGAGTGGTACAAGATTTTTTGTTATTCAGGGTTCGGAGTCATTAGCATCTTGGCAAGCAAACCTACTTTTTGAGCCAATTAAATTTGAGGGTTTGGATGTCCTTGTGCACAGAGGTATATATGAGGCTGCTAAAGGGATATATCTACAGATGTTGCCAGAAGTTCATGCTCACCTAAAATCTCGAGGTTCTCGTGCAACTTTCCGTTTCACTGGACATTCCCTTGGTGGAAGCTTGGCACTACTTGTAAATCTCATACAAGAAGTACCAATCACCTCTCTACTTCCTGTGATAACATTTGGTTCCCCTTCCATCATGTGTGGAGGCGACACTCTACTTGAAAAGCTTGGCCTGCCGCGAAGCCACGTGCAGGCAATTATAATGCACAGAGACATAGTACCGCGAGCATTTTCTTGCAATTACCCTGACCATGTTGCAAAAATCTTAAAGGCTATCAATGTGAACTTTCGCAATCACCCATGTCTCAATAACCAAAAGCTACTATACACACCAATGGGTGAATTGCTGATTCTTCAACCAGATGAGAAATTTTCACCAAGCCATAATCTTCTGCCGCAAGGCAGTGGTCTATATCTTTTGCATTGTCCTTTGTCAGAACCTAATGACACGGACAAGAAGCTCCGAGCCGCAAAGTTGACGTTCTTGAACACACCTCATCCACTTGAGATATTAAGTGACCGATCTGCTTATGGATCTGGAGGAACCATACAAAGAGATCATGACATGAACTCTTACTTAAAGACAGTGAGAAGCGTGATTCGCCAAGAACTTAACCAGATCCGTAAATCGATGCGAGAGAAAAGACGCAAGGTATGGTGGCCTCTTGTACTACCGCGACGAGTTGATACCAGCATTGTTGTTGGGAGGTCCATGGTATCGGTCAGTATCGGCCAACGCCAGTCACCGTTCTCTGGCATAATGAAGACAGGAAGAGAGTCCTTAAAAAGGTTTAGCAGGCTTGTTGCATCCCAACACATGCATTTATTTGTGTTGCTTTTTTTCCCTGCTAGGATGTTAATATTGGGGGCATATAGCTTGATTAGCCTTAGATGA
Protein sequence

>Msa0030480

MATTDSVTAVVAAKEEVKQAVADDLNSTRSSPCEWFICDDNQSGTRFFVIQGSESLASWQANLLFEPIKFEGLDVLVHRGIYEAAKGIYLQMLPEVHAHLKSRGSRATFRFTGHSLGGSLALLVNLIQEVPITSLLPVITFGSPSIMCGGDTLLEKLGLPRSHVQAIIMHRDIVPRAFSCNYPDHVAKILKAINVNFRNHPCLNNQKLLYTPMGELLILQPDEKFSPSHNLLPQGSGLYLLHCPLSEPNDTDKKLRAAKLTFLNTPHPLEILSDRSAYGSGGTIQRDHDMNSYLKTVRSVIRQELNQIRKSMREKRRKVWWPLVLPRRVDTSIVVGRSMVSVSIGQRQSPFSGIMKTGRESLKRFSRLVASQHMHLFVLLFFPARMLILGAYSLISLR*