AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0650060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0650060 MtrunA17_Chr4g0042051 96.032 126 5 0 1 126 1 126 2.69e-88 252
Msa0650060 MtrunA17_Chr2g0319291 71.311 122 35 0 1 122 1 122 1.16e-63 189
Msa0650060 MtrunA17_Chr2g0280411 59.322 118 48 0 6 123 5 122 1.39e-49 154
Msa0650060 MtrunA17_Chr7g0216481 41.237 97 57 0 17 113 33 129 3.60e-25 92.8
Msa0650060 MtrunA17_Chr7g0245141 35.294 102 66 0 12 113 26 127 1.07e-22 86.7
Msa0650060 MtrunA17_Chr1g0155721 36.893 103 65 0 8 110 4 106 4.89e-22 84.3
Msa0650060 MtrunA17_Chr3g0142051 35.455 110 67 1 1 110 1 106 1.32e-21 83.2
Msa0650060 MtrunA17_Chr8g0334481 34.343 99 65 0 15 113 31 129 2.66e-21 82.8
Msa0650060 MtrunA17_Chr5g0404831 35.965 114 71 1 1 114 1 112 2.90e-21 82.4
Msa0650060 MtrunA17_Chr5g0415771 38.938 113 65 2 4 114 13 123 1.69e-19 77.8
Msa0650060 MtrunA17_Chr8g0393201 32.075 106 72 0 8 113 225 330 1.43e-18 79.3
Msa0650060 MtrunA17_Chr5g0415761 33.333 105 70 0 10 114 20 124 4.41e-16 69.3
Msa0650060 MtrunA17_Chr5g0415741 34.286 105 69 0 10 114 18 122 1.30e-15 67.8
Msa0650060 MtrunA17_Chr1g0201781 33.721 86 55 2 35 118 81 166 2.33e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0650060 AT1G11530.1 58.036 112 47 0 10 121 2 113 1.55e-48 151
Msa0650060 AT3G51030.1 39.623 106 64 0 8 113 4 109 4.98e-24 89.4
Msa0650060 AT3G08710.2 37.615 109 68 0 15 123 28 136 1.12e-23 89.4
Msa0650060 AT3G08710.3 37.615 109 68 0 15 123 28 136 1.12e-23 89.4
Msa0650060 AT3G08710.1 37.615 109 68 0 15 123 28 136 1.12e-23 89.4
Msa0650060 AT5G39950.1 37.037 108 68 0 6 113 21 128 1.48e-23 89.0
Msa0650060 AT3G56420.1 38.889 108 66 0 5 112 35 142 1.83e-23 89.4
Msa0650060 AT3G56420.2 38.889 108 66 0 5 112 35 142 1.83e-23 89.4
Msa0650060 AT3G56420.3 38.889 108 66 0 5 112 35 142 1.83e-23 89.4
Msa0650060 AT1G45145.1 34.286 105 69 0 9 113 4 108 6.20e-23 86.7
Msa0650060 AT2G40790.2 36.538 104 66 0 9 112 39 142 1.26e-22 87.0
Msa0650060 AT2G40790.1 36.538 104 66 0 9 112 39 142 1.26e-22 87.0
Msa0650060 AT1G59730.1 34.615 104 68 0 12 115 23 126 1.36e-21 83.6
Msa0650060 AT5G42980.1 34.906 106 69 0 9 114 4 109 1.92e-19 77.8
Msa0650060 AT1G19730.1 31.776 107 72 1 8 113 4 110 1.02e-18 76.3
Msa0650060 AT1G69880.1 29.524 105 74 0 12 116 39 143 3.04e-17 73.2
Msa0650060 AT3G17880.2 34.211 114 71 1 11 124 264 373 6.31e-16 72.8
Msa0650060 AT3G17880.1 34.211 114 71 1 11 124 271 380 6.40e-16 72.8
Msa0650060 AT2G35010.2 30.841 107 72 1 12 116 86 192 2.83e-12 61.2
Msa0650060 AT2G35010.1 30.841 107 72 1 12 116 86 192 2.83e-12 61.2

Find 44 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTCTAATTGCAACTTAATT+TGG 0.183348 4_3:-56810448 Msa0650060:five_prime_UTR
CAATTGTTGTCTTATTTATA+AGG 0.224668 4_3:-56810338 Msa0650060:five_prime_UTR
ACTTACAAGGCAACCTTTAT+TGG 0.239798 4_3:+56810123 None:intergenic
TTTGAAGAAGTAGAAAATAA+TGG 0.308037 4_3:-56810227 Msa0650060:exon
GTGCAAATCCTGATGAAATT+AGG 0.320699 4_3:-56808743 Msa0650060:CDS
TCCTCCACTCATCAACAAAA+AGG 0.360970 4_3:+56808788 None:intergenic
ATCACTGAAGCTACCAATAA+AGG 0.364334 4_3:-56810136 Msa0650060:CDS
TTGAAGAAGTAGAAAATAAT+GGG 0.365131 4_3:-56810226 Msa0650060:exon
GTGATTTGGAGGAATGAGTT+TGG 0.374475 4_3:+56808697 None:intergenic
CATGGCATTGATTTCCAACT+TGG 0.380007 4_3:+56808815 None:intergenic
CATGAGCATAGCTGAAGAAT+TGG 0.386956 4_3:-56810414 Msa0650060:five_prime_UTR
CATCATCCATCAGAGTGATT+TGG 0.391841 4_3:+56808683 None:intergenic
GGTGGATGTGGACGAAGTTA+AGG 0.395797 4_3:-56809846 Msa0650060:intron
TATAACCAATCTTATCTAGC+TGG 0.426879 4_3:+56810378 None:intergenic
CTGAAGAATTGGTAACATAA+TGG 0.428650 4_3:-56810403 Msa0650060:five_prime_UTR
GATGCTAATTCTTCAAAGAA+AGG 0.438089 4_3:+56809896 None:intergenic
GGCATTGATTTCCAACTTGG+AGG 0.441850 4_3:+56808818 None:intergenic
CAGAAAGAGGACATCTTGAT+AGG 0.447661 4_3:+56809871 None:intergenic
AAAGGGTTCATAGCAATAGA+AGG 0.450955 4_3:+56809914 None:intergenic
CCTCTTTCTGAAGGTGGATG+TGG 0.473122 4_3:-56809858 Msa0650060:CDS
ATAACCAATCTTATCTAGCT+GGG 0.488311 4_3:+56810379 None:intergenic
GCACCAACAGCTTTCTCCAC+TGG 0.488674 4_3:+56808762 None:intergenic
ATGCTAATTCTTCAAAGAAA+GGG 0.500184 4_3:+56809897 None:intergenic
TTGTGTATATATACAAACTC+TGG 0.503825 4_3:+56810258 None:intergenic
CCACATCCACCTTCAGAAAG+AGG 0.505638 4_3:+56809858 None:intergenic
ATCCTGATGAAATTAGGAAA+AGG 0.511549 4_3:-56808737 Msa0650060:CDS
CATCCATCAGAGTGATTTGG+AGG 0.522008 4_3:+56808686 None:intergenic
ATTCCTCCAAATCACTCTGA+TGG 0.522941 4_3:-56808689 Msa0650060:exon
TGGCCCCAGCTAGATAAGAT+TGG 0.526897 4_3:-56810383 Msa0650060:five_prime_UTR
ACAGTATATATAGTTTGTGT+AGG 0.531357 4_3:-56810297 Msa0650060:five_prime_UTR
AAATTGACTCAAGAAAATCA+TGG 0.550454 4_3:-56810168 Msa0650060:CDS
AATTGACTCAAGAAAATCAT+GGG 0.553360 4_3:-56810167 Msa0650060:CDS
TATTGGTAGCTTCAGTGATG+TGG 0.558401 4_3:+56810140 None:intergenic
TCAAGATGTCCTCTTTCTGA+AGG 0.562276 4_3:-56809867 Msa0650060:CDS
ATTCTTCAGCTATGCTCATG+TGG 0.565681 4_3:+56810417 None:intergenic
AGATGTCCTCTTTCTGAAGG+TGG 0.570239 4_3:-56809864 Msa0650060:CDS
TGATGAAATTAGGAAAAGGA+TGG 0.577508 4_3:-56808733 Msa0650060:CDS
TAGAATATATATTATTACAC+AGG 0.582812 4_3:+56808577 None:intergenic
CTAGGAAGTAGCCTCCAAGT+TGG 0.602024 4_3:-56808829 Msa0650060:intron
AATCCAGTGGAGAAAGCTGT+TGG 0.602305 4_3:-56808765 Msa0650060:CDS
AAAGAGGACATCTTGATAGG+TGG 0.610226 4_3:+56809874 None:intergenic
TAACCAATCTTATCTAGCTG+GGG 0.641666 4_3:+56810380 None:intergenic
AAGAAGTAGAAAATAATGGG+TGG 0.661165 4_3:-56810223 Msa0650060:exon
GATGAGTGGAGGAAATCCAG+TGG 0.727295 4_3:-56808778 Msa0650060:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCTATATAGTTATATTAAT+AGG - chr4_3:56809115-56809134 Msa0650060:intron 10.0%
!!! ATGATAAAAGATATTATTTT+AGG + chr4_3:56809830-56809849 None:intergenic 10.0%
!! TAAATAAAAAAATACATGTA+GGG - chr4_3:56810068-56810087 Msa0650060:intron 10.0%
!! ATCTATATAGTTATATTAAT+AGG - chr4_3:56809115-56809134 Msa0650060:intron 10.0%
!!! ATGATAAAAGATATTATTTT+AGG + chr4_3:56809830-56809849 None:intergenic 10.0%
!! TAAATAAAAAAATACATGTA+GGG - chr4_3:56810068-56810087 Msa0650060:intron 10.0%
!! CATGTAAAATTATAACAATT+GGG - chr4_3:56809062-56809081 Msa0650060:intron 15.0%
!! TTTAAAAACACAAATGAAAA+AGG + chr4_3:56809328-56809347 None:intergenic 15.0%
!! AATCAGAAAATAAACAATTT+GGG + chr4_3:56809674-56809693 None:intergenic 15.0%
!! CTAAATAAAAAAATACATGT+AGG - chr4_3:56810067-56810086 Msa0650060:intron 15.0%
!! ATTACATAACATATTGTTAT+TGG + chr4_3:56810169-56810188 None:intergenic 15.0%
!! CATGTAAAATTATAACAATT+GGG - chr4_3:56809062-56809081 Msa0650060:intron 15.0%
!! TTTAAAAACACAAATGAAAA+AGG + chr4_3:56809328-56809347 None:intergenic 15.0%
!! AATCAGAAAATAAACAATTT+GGG + chr4_3:56809674-56809693 None:intergenic 15.0%
!! CTAAATAAAAAAATACATGT+AGG - chr4_3:56810067-56810086 Msa0650060:intron 15.0%
!! ATTACATAACATATTGTTAT+TGG + chr4_3:56810169-56810188 None:intergenic 15.0%
!!! CAATTGTTGTCTTATTTATA+AGG - chr4_3:56808777-56808796 Msa0650060:CDS 20.0%
!!! TATTTTCTACTTCTTCAAAA+GGG + chr4_3:56808887-56808906 None:intergenic 20.0%
!!! TTATTTTCTACTTCTTCAAA+AGG + chr4_3:56808888-56808907 None:intergenic 20.0%
!! TTTGAAGAAGTAGAAAATAA+TGG - chr4_3:56808888-56808907 Msa0650060:intron 20.0%
!! TTGAAGAAGTAGAAAATAAT+GGG - chr4_3:56808889-56808908 Msa0650060:intron 20.0%
!!! TAAAATTGATGATACTTACA+AGG + chr4_3:56809008-56809027 None:intergenic 20.0%
!!! TGTAAGTATCATCAATTTTA+TGG - chr4_3:56809008-56809027 Msa0650060:intron 20.0%
!! GCATGTAAAATTATAACAAT+TGG - chr4_3:56809061-56809080 Msa0650060:intron 20.0%
!! TTTGTTCATAAAATATTTGC+AGG - chr4_3:56809146-56809165 Msa0650060:intron 20.0%
!!! GAAGTTAAGGTAATTTTTTA+TGG - chr4_3:56809282-56809301 Msa0650060:intron 20.0%
!! AATAAACAATTTGGGAATAT+TGG + chr4_3:56809666-56809685 None:intergenic 20.0%
!! GAATCAGAAAATAAACAATT+TGG + chr4_3:56809675-56809694 None:intergenic 20.0%
!! ATGCCATTATTATAAGTTAA+AGG + chr4_3:56809776-56809795 None:intergenic 20.0%
!! TCACAAATTATTGAAACAAA+AGG + chr4_3:56809913-56809932 None:intergenic 20.0%
!!! TCAATAATTTGTGAATTTTC+TGG - chr4_3:56809919-56809938 Msa0650060:CDS 20.0%
!!! ATTAGTTTAGAAAATAAGCA+TGG + chr4_3:56810047-56810066 None:intergenic 20.0%
!!! CAATTGTTGTCTTATTTATA+AGG - chr4_3:56808777-56808796 Msa0650060:CDS 20.0%
!!! TATTTTCTACTTCTTCAAAA+GGG + chr4_3:56808887-56808906 None:intergenic 20.0%
!!! TTATTTTCTACTTCTTCAAA+AGG + chr4_3:56808888-56808907 None:intergenic 20.0%
!! TTTGAAGAAGTAGAAAATAA+TGG - chr4_3:56808888-56808907 Msa0650060:intron 20.0%
!! TTGAAGAAGTAGAAAATAAT+GGG - chr4_3:56808889-56808908 Msa0650060:intron 20.0%
!!! TAAAATTGATGATACTTACA+AGG + chr4_3:56809008-56809027 None:intergenic 20.0%
!!! TGTAAGTATCATCAATTTTA+TGG - chr4_3:56809008-56809027 Msa0650060:intron 20.0%
!! GCATGTAAAATTATAACAAT+TGG - chr4_3:56809061-56809080 Msa0650060:intron 20.0%
!! TTTGTTCATAAAATATTTGC+AGG - chr4_3:56809146-56809165 Msa0650060:intron 20.0%
!!! GAAGTTAAGGTAATTTTTTA+TGG - chr4_3:56809282-56809301 Msa0650060:intron 20.0%
!! AATAAACAATTTGGGAATAT+TGG + chr4_3:56809666-56809685 None:intergenic 20.0%
!! GAATCAGAAAATAAACAATT+TGG + chr4_3:56809675-56809694 None:intergenic 20.0%
!! ATGCCATTATTATAAGTTAA+AGG + chr4_3:56809776-56809795 None:intergenic 20.0%
!! TCACAAATTATTGAAACAAA+AGG + chr4_3:56809913-56809932 None:intergenic 20.0%
!!! TCAATAATTTGTGAATTTTC+TGG - chr4_3:56809919-56809938 Msa0650060:CDS 20.0%
!!! ATTAGTTTAGAAAATAAGCA+TGG + chr4_3:56810047-56810066 None:intergenic 20.0%
! TGTCTAATTGCAACTTAATT+TGG - chr4_3:56808667-56808686 Msa0650060:three_prime_UTR 25.0%
!! ACAGTATATATAGTTTGTGT+AGG - chr4_3:56808818-56808837 Msa0650060:CDS 25.0%
! TTGTGTATATATACAAACTC+TGG + chr4_3:56808860-56808879 None:intergenic 25.0%
!! AAATTGACTCAAGAAAATCA+TGG - chr4_3:56808947-56808966 Msa0650060:intron 25.0%
!! AATTGACTCAAGAAAATCAT+GGG - chr4_3:56808948-56808967 Msa0650060:intron 25.0%
! TTATAACAATTGGGTGATTA+TGG - chr4_3:56809071-56809090 Msa0650060:intron 25.0%
! CATAAAATATTTGCAGGTTA+TGG - chr4_3:56809152-56809171 Msa0650060:intron 25.0%
! ATGCTAATTCTTCAAAGAAA+GGG + chr4_3:56809221-56809240 None:intergenic 25.0%
!!! AGGTAATTTTTTATGGTCTA+TGG - chr4_3:56809289-56809308 Msa0650060:intron 25.0%
!!! TAATTTTTTATGGTCTATGG+AGG - chr4_3:56809292-56809311 Msa0650060:intron 25.0%
!!! AATTTTTTATGGTCTATGGA+GGG - chr4_3:56809293-56809312 Msa0650060:intron 25.0%
!! CGGATAATGGTATATATATA+TGG + chr4_3:56809363-56809382 None:intergenic 25.0%
!! ACGCTTTCAATTTAAAATGT+CGG + chr4_3:56809393-56809412 None:intergenic 25.0%
! AAACTAACATGTAGTTTCTT+TGG + chr4_3:56809584-56809603 None:intergenic 25.0%
!! GAGCCTTTAACTTATAATAA+TGG - chr4_3:56809770-56809789 Msa0650060:intron 25.0%
! TTGTAGATGATATCAATATG+TGG - chr4_3:56809804-56809823 Msa0650060:intron 25.0%
!! CTTTTATCATCATCCTTTTT+AGG - chr4_3:56809840-56809859 Msa0650060:intron 25.0%
! CAAATTATTGAAACAAAAGG+TGG + chr4_3:56809910-56809929 None:intergenic 25.0%
!! ATGGAAGAAACTGTTTATTT+TGG - chr4_3:56809981-56810000 Msa0650060:intron 25.0%
!! TTAACTAACTACCTTTTGTT+TGG - chr4_3:56810236-56810255 Msa0650060:five_prime_UTR 25.0%
! TGTCTAATTGCAACTTAATT+TGG - chr4_3:56808667-56808686 Msa0650060:three_prime_UTR 25.0%
!! ACAGTATATATAGTTTGTGT+AGG - chr4_3:56808818-56808837 Msa0650060:CDS 25.0%
! TTGTGTATATATACAAACTC+TGG + chr4_3:56808860-56808879 None:intergenic 25.0%
!! AAATTGACTCAAGAAAATCA+TGG - chr4_3:56808947-56808966 Msa0650060:intron 25.0%
!! AATTGACTCAAGAAAATCAT+GGG - chr4_3:56808948-56808967 Msa0650060:intron 25.0%
! TTATAACAATTGGGTGATTA+TGG - chr4_3:56809071-56809090 Msa0650060:intron 25.0%
! CATAAAATATTTGCAGGTTA+TGG - chr4_3:56809152-56809171 Msa0650060:intron 25.0%
! ATGCTAATTCTTCAAAGAAA+GGG + chr4_3:56809221-56809240 None:intergenic 25.0%
!!! AGGTAATTTTTTATGGTCTA+TGG - chr4_3:56809289-56809308 Msa0650060:intron 25.0%
!!! TAATTTTTTATGGTCTATGG+AGG - chr4_3:56809292-56809311 Msa0650060:intron 25.0%
!!! AATTTTTTATGGTCTATGGA+GGG - chr4_3:56809293-56809312 Msa0650060:intron 25.0%
!! CGGATAATGGTATATATATA+TGG + chr4_3:56809363-56809382 None:intergenic 25.0%
!! ACGCTTTCAATTTAAAATGT+CGG + chr4_3:56809393-56809412 None:intergenic 25.0%
! AAACTAACATGTAGTTTCTT+TGG + chr4_3:56809584-56809603 None:intergenic 25.0%
!! GAGCCTTTAACTTATAATAA+TGG - chr4_3:56809770-56809789 Msa0650060:intron 25.0%
! TTGTAGATGATATCAATATG+TGG - chr4_3:56809804-56809823 Msa0650060:intron 25.0%
!! CTTTTATCATCATCCTTTTT+AGG - chr4_3:56809840-56809859 Msa0650060:intron 25.0%
! CAAATTATTGAAACAAAAGG+TGG + chr4_3:56809910-56809929 None:intergenic 25.0%
!! ATGGAAGAAACTGTTTATTT+TGG - chr4_3:56809981-56810000 Msa0650060:intron 25.0%
!! TTAACTAACTACCTTTTGTT+TGG - chr4_3:56810236-56810255 Msa0650060:five_prime_UTR 25.0%
! CTGAAGAATTGGTAACATAA+TGG - chr4_3:56808712-56808731 Msa0650060:CDS 30.0%
ATAACCAATCTTATCTAGCT+GGG + chr4_3:56808739-56808758 None:intergenic 30.0%
TATAACCAATCTTATCTAGC+TGG + chr4_3:56808740-56808759 None:intergenic 30.0%
! AAGAAGTAGAAAATAATGGG+TGG - chr4_3:56808892-56808911 Msa0650060:intron 30.0%
!! TGGTTCATTTTTCTGCTTAT+TGG - chr4_3:56809172-56809191 Msa0650060:intron 30.0%
GATGCTAATTCTTCAAAGAA+AGG + chr4_3:56809222-56809241 None:intergenic 30.0%
!!! ATTTTTTATGGTCTATGGAG+GGG - chr4_3:56809294-56809313 Msa0650060:intron 30.0%
! AAACTGAAAGTTTAGTTCGT+TGG + chr4_3:56809464-56809483 None:intergenic 30.0%
! CAGTTCAAAAAAGTACAGTT+CGG - chr4_3:56809524-56809543 Msa0650060:intron 30.0%
TATGATATCTCCTTCTATGT+TGG - chr4_3:56809603-56809622 Msa0650060:intron 30.0%
!! TTATCATCATCCTTTTTAGG+TGG - chr4_3:56809843-56809862 Msa0650060:intron 30.0%
! ATGCCAATTTTTATGTTGAG+TGG - chr4_3:56809948-56809967 Msa0650060:CDS 30.0%
TCTCCACTCAACATAAAAAT+TGG + chr4_3:56809954-56809973 None:intergenic 30.0%
! AATTTTTATGTTGAGTGGAG+AGG - chr4_3:56809953-56809972 Msa0650060:intron 30.0%
ATCCTGATGAAATTAGGAAA+AGG - chr4_3:56810378-56810397 Msa0650060:five_prime_UTR 30.0%
! ATCCTTTTCCTAATTTCATC+AGG + chr4_3:56810383-56810402 None:intergenic 30.0%
TGATGAAATTAGGAAAAGGA+TGG - chr4_3:56810382-56810401 Msa0650060:five_prime_UTR 30.0%
! CTGAAGAATTGGTAACATAA+TGG - chr4_3:56808712-56808731 Msa0650060:CDS 30.0%
ATAACCAATCTTATCTAGCT+GGG + chr4_3:56808739-56808758 None:intergenic 30.0%
TATAACCAATCTTATCTAGC+TGG + chr4_3:56808740-56808759 None:intergenic 30.0%
! AAGAAGTAGAAAATAATGGG+TGG - chr4_3:56808892-56808911 Msa0650060:intron 30.0%
!! TGGTTCATTTTTCTGCTTAT+TGG - chr4_3:56809172-56809191 Msa0650060:intron 30.0%
GATGCTAATTCTTCAAAGAA+AGG + chr4_3:56809222-56809241 None:intergenic 30.0%
!!! ATTTTTTATGGTCTATGGAG+GGG - chr4_3:56809294-56809313 Msa0650060:intron 30.0%
! AAACTGAAAGTTTAGTTCGT+TGG + chr4_3:56809464-56809483 None:intergenic 30.0%
! CAGTTCAAAAAAGTACAGTT+CGG - chr4_3:56809524-56809543 Msa0650060:intron 30.0%
TATGATATCTCCTTCTATGT+TGG - chr4_3:56809603-56809622 Msa0650060:intron 30.0%
!! TTATCATCATCCTTTTTAGG+TGG - chr4_3:56809843-56809862 Msa0650060:intron 30.0%
! ATGCCAATTTTTATGTTGAG+TGG - chr4_3:56809948-56809967 Msa0650060:CDS 30.0%
TCTCCACTCAACATAAAAAT+TGG + chr4_3:56809954-56809973 None:intergenic 30.0%
! AATTTTTATGTTGAGTGGAG+AGG - chr4_3:56809953-56809972 Msa0650060:intron 30.0%
ATCCTGATGAAATTAGGAAA+AGG - chr4_3:56810378-56810397 Msa0650060:five_prime_UTR 30.0%
! ATCCTTTTCCTAATTTCATC+AGG + chr4_3:56810383-56810402 None:intergenic 30.0%
TGATGAAATTAGGAAAAGGA+TGG - chr4_3:56810382-56810401 Msa0650060:five_prime_UTR 30.0%
TAACCAATCTTATCTAGCTG+GGG + chr4_3:56808738-56808757 None:intergenic 35.0%
! TGAGTCAATTTTCACAACCT+TGG + chr4_3:56808938-56808957 None:intergenic 35.0%
ATCACTGAAGCTACCAATAA+AGG - chr4_3:56808979-56808998 Msa0650060:intron 35.0%
ACTTACAAGGCAACCTTTAT+TGG + chr4_3:56808995-56809014 None:intergenic 35.0%
AAAGGGTTCATAGCAATAGA+AGG + chr4_3:56809204-56809223 None:intergenic 35.0%
!! TTTAAAATGTCGGTGTTGCA+CGG + chr4_3:56809383-56809402 None:intergenic 35.0%
!!! AGTCTCTGACATGTTTTAGT+AGG - chr4_3:56809417-56809436 Msa0650060:intron 35.0%
GTGAACTAATTGTCACAGTT+CGG - chr4_3:56809484-56809503 Msa0650060:intron 35.0%
ATCTCCTTCTATGTTGGAAA+TGG - chr4_3:56809609-56809628 Msa0650060:intron 35.0%
AAGCATGATATCACTAAGAC+TGG - chr4_3:56809743-56809762 Msa0650060:intron 35.0%
! TGATATCACTAAGACTGGTT+TGG - chr4_3:56809748-56809767 Msa0650060:intron 35.0%
!!! ATCCTTTTTAGGTGGTTTCA+AGG - chr4_3:56809851-56809870 Msa0650060:CDS 35.0%
!!! TCCTTTTTAGGTGGTTTCAA+GGG - chr4_3:56809852-56809871 Msa0650060:CDS 35.0%
ACAACAATCATGCATCAAAG+AGG + chr4_3:56810192-56810211 None:intergenic 35.0%
CATAGAACAGTCCAAACAAA+AGG + chr4_3:56810250-56810269 None:intergenic 35.0%
!! TGCTTTTTGTGACTCTATCT+AGG - chr4_3:56810268-56810287 Msa0650060:five_prime_UTR 35.0%
GTGCAAATCCTGATGAAATT+AGG - chr4_3:56810372-56810391 Msa0650060:five_prime_UTR 35.0%
TAACCAATCTTATCTAGCTG+GGG + chr4_3:56808738-56808757 None:intergenic 35.0%
! TGAGTCAATTTTCACAACCT+TGG + chr4_3:56808938-56808957 None:intergenic 35.0%
ATCACTGAAGCTACCAATAA+AGG - chr4_3:56808979-56808998 Msa0650060:intron 35.0%
ACTTACAAGGCAACCTTTAT+TGG + chr4_3:56808995-56809014 None:intergenic 35.0%
AAAGGGTTCATAGCAATAGA+AGG + chr4_3:56809204-56809223 None:intergenic 35.0%
!! TTTAAAATGTCGGTGTTGCA+CGG + chr4_3:56809383-56809402 None:intergenic 35.0%
!!! AGTCTCTGACATGTTTTAGT+AGG - chr4_3:56809417-56809436 Msa0650060:intron 35.0%
GTGAACTAATTGTCACAGTT+CGG - chr4_3:56809484-56809503 Msa0650060:intron 35.0%
ATCTCCTTCTATGTTGGAAA+TGG - chr4_3:56809609-56809628 Msa0650060:intron 35.0%
AAGCATGATATCACTAAGAC+TGG - chr4_3:56809743-56809762 Msa0650060:intron 35.0%
! TGATATCACTAAGACTGGTT+TGG - chr4_3:56809748-56809767 Msa0650060:intron 35.0%
!!! ATCCTTTTTAGGTGGTTTCA+AGG - chr4_3:56809851-56809870 Msa0650060:CDS 35.0%
!!! TCCTTTTTAGGTGGTTTCAA+GGG - chr4_3:56809852-56809871 Msa0650060:CDS 35.0%
ACAACAATCATGCATCAAAG+AGG + chr4_3:56810192-56810211 None:intergenic 35.0%
CATAGAACAGTCCAAACAAA+AGG + chr4_3:56810250-56810269 None:intergenic 35.0%
!! TGCTTTTTGTGACTCTATCT+AGG - chr4_3:56810268-56810287 Msa0650060:five_prime_UTR 35.0%
GTGCAAATCCTGATGAAATT+AGG - chr4_3:56810372-56810391 Msa0650060:five_prime_UTR 35.0%
ATTCTTCAGCTATGCTCATG+TGG + chr4_3:56808701-56808720 None:intergenic 40.0%
CATGAGCATAGCTGAAGAAT+TGG - chr4_3:56808701-56808720 Msa0650060:CDS 40.0%
ACAACAGCACAAAAAGTCCA+AGG - chr4_3:56808918-56808937 Msa0650060:intron 40.0%
! TATTGGTAGCTTCAGTGATG+TGG + chr4_3:56808978-56808997 None:intergenic 40.0%
GGTGATTATGGTTTCAGCTT+CGG - chr4_3:56809083-56809102 Msa0650060:intron 40.0%
AAAGAGGACATCTTGATAGG+TGG + chr4_3:56809244-56809263 None:intergenic 40.0%
CAGAAAGAGGACATCTTGAT+AGG + chr4_3:56809247-56809266 None:intergenic 40.0%
TCAAGATGTCCTCTTTCTGA+AGG - chr4_3:56809248-56809267 Msa0650060:intron 40.0%
! TACAGTTCGGTTTTCTGTGA+AGG - chr4_3:56809537-56809556 Msa0650060:intron 40.0%
!! CTGTGAAGGTAGTTCTGATT+CGG - chr4_3:56809551-56809570 Msa0650060:intron 40.0%
TTGCATGTGCTGCAAATTAG+AGG + chr4_3:56809637-56809656 None:intergenic 40.0%
AGTTCATGTGACCTCAAAGT+GGG + chr4_3:56809703-56809722 None:intergenic 40.0%
TCCCTTGAAACCACCTAAAA+AGG + chr4_3:56809856-56809875 None:intergenic 40.0%
ATAAACACAGCCCTCAAAGT+GGG + chr4_3:56810016-56810035 None:intergenic 40.0%
TATAAACACAGCCCTCAAAG+TGG + chr4_3:56810017-56810036 None:intergenic 40.0%
!! CATGGCATTGATTTCCAACT+TGG + chr4_3:56810303-56810322 None:intergenic 40.0%
CATCAACAAAAAGGTAGGCA+TGG + chr4_3:56810321-56810340 None:intergenic 40.0%
CCACTCATCAACAAAAAGGT+AGG + chr4_3:56810326-56810345 None:intergenic 40.0%
!! CCTACCTTTTTGTTGATGAG+TGG - chr4_3:56810323-56810342 Msa0650060:five_prime_UTR 40.0%
!! ACCTTTTTGTTGATGAGTGG+AGG - chr4_3:56810326-56810345 Msa0650060:five_prime_UTR 40.0%
TCCTCCACTCATCAACAAAA+AGG + chr4_3:56810330-56810349 None:intergenic 40.0%
! GTGATTTGGAGGAATGAGTT+TGG + chr4_3:56810421-56810440 None:intergenic 40.0%
ATTCCTCCAAATCACTCTGA+TGG - chr4_3:56810426-56810445 Msa0650060:five_prime_UTR 40.0%
CATCATCCATCAGAGTGATT+TGG + chr4_3:56810435-56810454 None:intergenic 40.0%
ATTCTTCAGCTATGCTCATG+TGG + chr4_3:56808701-56808720 None:intergenic 40.0%
CATGAGCATAGCTGAAGAAT+TGG - chr4_3:56808701-56808720 Msa0650060:CDS 40.0%
ACAACAGCACAAAAAGTCCA+AGG - chr4_3:56808918-56808937 Msa0650060:intron 40.0%
! TATTGGTAGCTTCAGTGATG+TGG + chr4_3:56808978-56808997 None:intergenic 40.0%
GGTGATTATGGTTTCAGCTT+CGG - chr4_3:56809083-56809102 Msa0650060:intron 40.0%
AAAGAGGACATCTTGATAGG+TGG + chr4_3:56809244-56809263 None:intergenic 40.0%
CAGAAAGAGGACATCTTGAT+AGG + chr4_3:56809247-56809266 None:intergenic 40.0%
TCAAGATGTCCTCTTTCTGA+AGG - chr4_3:56809248-56809267 Msa0650060:intron 40.0%
! TACAGTTCGGTTTTCTGTGA+AGG - chr4_3:56809537-56809556 Msa0650060:intron 40.0%
!! CTGTGAAGGTAGTTCTGATT+CGG - chr4_3:56809551-56809570 Msa0650060:intron 40.0%
TTGCATGTGCTGCAAATTAG+AGG + chr4_3:56809637-56809656 None:intergenic 40.0%
AGTTCATGTGACCTCAAAGT+GGG + chr4_3:56809703-56809722 None:intergenic 40.0%
TCCCTTGAAACCACCTAAAA+AGG + chr4_3:56809856-56809875 None:intergenic 40.0%
ATAAACACAGCCCTCAAAGT+GGG + chr4_3:56810016-56810035 None:intergenic 40.0%
TATAAACACAGCCCTCAAAG+TGG + chr4_3:56810017-56810036 None:intergenic 40.0%
!! CATGGCATTGATTTCCAACT+TGG + chr4_3:56810303-56810322 None:intergenic 40.0%
CATCAACAAAAAGGTAGGCA+TGG + chr4_3:56810321-56810340 None:intergenic 40.0%
CCACTCATCAACAAAAAGGT+AGG + chr4_3:56810326-56810345 None:intergenic 40.0%
!! CCTACCTTTTTGTTGATGAG+TGG - chr4_3:56810323-56810342 Msa0650060:five_prime_UTR 40.0%
!! ACCTTTTTGTTGATGAGTGG+AGG - chr4_3:56810326-56810345 Msa0650060:five_prime_UTR 40.0%
TCCTCCACTCATCAACAAAA+AGG + chr4_3:56810330-56810349 None:intergenic 40.0%
! GTGATTTGGAGGAATGAGTT+TGG + chr4_3:56810421-56810440 None:intergenic 40.0%
ATTCCTCCAAATCACTCTGA+TGG - chr4_3:56810426-56810445 Msa0650060:five_prime_UTR 40.0%
CATCATCCATCAGAGTGATT+TGG + chr4_3:56810435-56810454 None:intergenic 40.0%
! AGATGTCCTCTTTCTGAAGG+TGG - chr4_3:56809251-56809270 Msa0650060:intron 45.0%
TTTATGGTCTATGGAGGGGA+AGG - chr4_3:56809298-56809317 Msa0650060:intron 45.0%
!! AGGTAGTTCTGATTCGGTTC+AGG - chr4_3:56809557-56809576 Msa0650060:intron 45.0%
GGCTCCATTTCCAACATAGA+AGG + chr4_3:56809616-56809635 None:intergenic 45.0%
TGATTCCAAACCCCACTTTG+AGG - chr4_3:56809689-56809708 Msa0650060:intron 45.0%
GTTCATGTGACCTCAAAGTG+GGG + chr4_3:56809702-56809721 None:intergenic 45.0%
CAGTTCATGTGACCTCAAAG+TGG + chr4_3:56809704-56809723 None:intergenic 45.0%
GATTCCAAACCCCACTTTGA+GGG - chr4_3:56809690-56809709 Msa0650060:intron 45.0%
TAAACACAGCCCTCAAAGTG+GGG + chr4_3:56810015-56810034 None:intergenic 45.0%
!! GGCATTGATTTCCAACTTGG+AGG + chr4_3:56810300-56810319 None:intergenic 45.0%
AATCCAGTGGAGAAAGCTGT+TGG - chr4_3:56810350-56810369 Msa0650060:five_prime_UTR 45.0%
! CATCCATCAGAGTGATTTGG+AGG + chr4_3:56810432-56810451 None:intergenic 45.0%
! AGATGTCCTCTTTCTGAAGG+TGG - chr4_3:56809251-56809270 Msa0650060:intron 45.0%
TTTATGGTCTATGGAGGGGA+AGG - chr4_3:56809298-56809317 Msa0650060:intron 45.0%
!! AGGTAGTTCTGATTCGGTTC+AGG - chr4_3:56809557-56809576 Msa0650060:intron 45.0%
GGCTCCATTTCCAACATAGA+AGG + chr4_3:56809616-56809635 None:intergenic 45.0%
TGATTCCAAACCCCACTTTG+AGG - chr4_3:56809689-56809708 Msa0650060:intron 45.0%
GTTCATGTGACCTCAAAGTG+GGG + chr4_3:56809702-56809721 None:intergenic 45.0%
CAGTTCATGTGACCTCAAAG+TGG + chr4_3:56809704-56809723 None:intergenic 45.0%
GATTCCAAACCCCACTTTGA+GGG - chr4_3:56809690-56809709 Msa0650060:intron 45.0%
TAAACACAGCCCTCAAAGTG+GGG + chr4_3:56810015-56810034 None:intergenic 45.0%
!! GGCATTGATTTCCAACTTGG+AGG + chr4_3:56810300-56810319 None:intergenic 45.0%
AATCCAGTGGAGAAAGCTGT+TGG - chr4_3:56810350-56810369 Msa0650060:five_prime_UTR 45.0%
! CATCCATCAGAGTGATTTGG+AGG + chr4_3:56810432-56810451 None:intergenic 45.0%
TGGCCCCAGCTAGATAAGAT+TGG - chr4_3:56808732-56808751 Msa0650060:CDS 50.0%
CCACATCCACCTTCAGAAAG+AGG + chr4_3:56809260-56809279 None:intergenic 50.0%
! CCTCTTTCTGAAGGTGGATG+TGG - chr4_3:56809257-56809276 Msa0650060:intron 50.0%
GGTGGATGTGGACGAAGTTA+AGG - chr4_3:56809269-56809288 Msa0650060:intron 50.0%
!! TGTCGGTGTTGCACGGATAA+TGG + chr4_3:56809376-56809395 None:intergenic 50.0%
TGTGACCTCAAAGTGGGGTT+TGG + chr4_3:56809697-56809716 None:intergenic 50.0%
GTTGAGTGGAGAGGCTCTTA+TGG - chr4_3:56809962-56809981 Msa0650060:intron 50.0%
GGATTCCAAACCCCACTTTG+AGG - chr4_3:56810002-56810021 Msa0650060:intron 50.0%
CTAGGAAGTAGCCTCCAAGT+TGG - chr4_3:56810286-56810305 Msa0650060:five_prime_UTR 50.0%
GATGAGTGGAGGAAATCCAG+TGG - chr4_3:56810337-56810356 Msa0650060:five_prime_UTR 50.0%
TGGCCCCAGCTAGATAAGAT+TGG - chr4_3:56808732-56808751 Msa0650060:CDS 50.0%
CCACATCCACCTTCAGAAAG+AGG + chr4_3:56809260-56809279 None:intergenic 50.0%
! CCTCTTTCTGAAGGTGGATG+TGG - chr4_3:56809257-56809276 Msa0650060:intron 50.0%
GGTGGATGTGGACGAAGTTA+AGG - chr4_3:56809269-56809288 Msa0650060:intron 50.0%
!! TGTCGGTGTTGCACGGATAA+TGG + chr4_3:56809376-56809395 None:intergenic 50.0%
TGTGACCTCAAAGTGGGGTT+TGG + chr4_3:56809697-56809716 None:intergenic 50.0%
GTTGAGTGGAGAGGCTCTTA+TGG - chr4_3:56809962-56809981 Msa0650060:intron 50.0%
GGATTCCAAACCCCACTTTG+AGG - chr4_3:56810002-56810021 Msa0650060:intron 50.0%
CTAGGAAGTAGCCTCCAAGT+TGG - chr4_3:56810286-56810305 Msa0650060:five_prime_UTR 50.0%
GATGAGTGGAGGAAATCCAG+TGG - chr4_3:56810337-56810356 Msa0650060:five_prime_UTR 50.0%
ACAGCCCTCAAAGTGGGGTT+TGG + chr4_3:56810010-56810029 None:intergenic 55.0%
GCACCAACAGCTTTCTCCAC+TGG + chr4_3:56810356-56810375 None:intergenic 55.0%
ACAGCCCTCAAAGTGGGGTT+TGG + chr4_3:56810010-56810029 None:intergenic 55.0%
GCACCAACAGCTTTCTCCAC+TGG + chr4_3:56810356-56810375 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 56808578 56810559 56808578 ID=Msa0650060;Name=Msa0650060
chr4_3 mRNA 56808578 56810559 56808578 ID=Msa0650060-mRNA-1;Parent=Msa0650060;Name=Msa0650060-mRNA-1;_AED=0.13;_eAED=0.13;_QI=329|1|1|1|1|1|3|114|126
chr4_3 exon 56808578 56808847 56808578 ID=Msa0650060-mRNA-1:exon:14890;Parent=Msa0650060-mRNA-1
chr4_3 exon 56809847 56809969 56809847 ID=Msa0650060-mRNA-1:exon:14889;Parent=Msa0650060-mRNA-1
chr4_3 exon 56810129 56810559 56810129 ID=Msa0650060-mRNA-1:exon:14888;Parent=Msa0650060-mRNA-1
chr4_3 five_prime_UTR 56810231 56810559 56810231 ID=Msa0650060-mRNA-1:five_prime_utr;Parent=Msa0650060-mRNA-1
chr4_3 CDS 56810129 56810230 56810129 ID=Msa0650060-mRNA-1:cds;Parent=Msa0650060-mRNA-1
chr4_3 CDS 56809847 56809969 56809847 ID=Msa0650060-mRNA-1:cds;Parent=Msa0650060-mRNA-1
chr4_3 CDS 56808692 56808847 56808692 ID=Msa0650060-mRNA-1:cds;Parent=Msa0650060-mRNA-1
chr4_3 three_prime_UTR 56808578 56808691 56808578 ID=Msa0650060-mRNA-1:three_prime_utr;Parent=Msa0650060-mRNA-1
Gene Sequence

>Msa0650060

ATGGGTGGTCAACAACAGCACAAAAAGTCCAAGGTTGTGAAAATTGACTCAAGAAAATCATGGGAACACCACATCACTGAAGCTACCAATAAAGGTTGCCTTGTTATGGTTCATTTTTCTGCTTATTGGTGCGTTCCTTCTATTGCTATGAACCCTTTCTTTGAAGAATTAGCATCCACCTATCAAGATGTCCTCTTTCTGAAGGTGGATGTGGACGAAGTTAAGGAAGTAGCCTCCAAGTTGGAAATCAATGCCATGCCTACCTTTTTGTTGATGAGTGGAGGAAATCCAGTGGAGAAAGCTGTTGGTGCAAATCCTGATGAAATTAGGAAAAGGATGGATCATTTTATTAACCAAACTCATTCCTCCAAATCACTCTGA

Protein sequence

>Msa0650060

MGGQQQHKKSKVVKIDSRKSWEHHITEATNKGCLVMVHFSAYWCVPSIAMNPFFEELASTYQDVLFLKVDVDEVKEVASKLEINAMPTFLLMSGGNPVEKAVGANPDEIRKRMDHFINQTHSSKSL*