Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0506360 | XP_013460468.1 | 94.196 | 224 | 13 | 0 | 1 | 224 | 1 | 224 | 1.87e-155 | 440 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0506360 | sp|P25317|GSTXA_TOBAC | 71.233 | 219 | 63 | 0 | 5 | 223 | 1 | 219 | 3.71e-119 | 340 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0506360 | I3S5Q9 | 94.196 | 224 | 13 | 0 | 1 | 224 | 1 | 224 | 8.91e-156 | 440 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0076640 | Msa0506360 | 0.813272 | 2.784183e-51 | -8.615850e-47 |
| Msa0086190 | Msa0506360 | 0.817360 | 3.434291e-52 | -8.615850e-47 |
| Msa0087550 | Msa0506360 | 0.804065 | 2.582949e-49 | -8.615850e-47 |
| Msa0100750 | Msa0506360 | 0.835072 | 2.076299e-56 | -8.615850e-47 |
| Msa0129640 | Msa0506360 | 0.818643 | 1.761541e-52 | -8.615850e-47 |
| Msa0134270 | Msa0506360 | 0.800701 | 1.273795e-48 | -8.615850e-47 |
| Msa0182020 | Msa0506360 | 0.837347 | 5.484785e-57 | -8.615850e-47 |
| Msa0224210 | Msa0506360 | 0.824046 | 9.980214e-54 | -8.615850e-47 |
| Msa0390790 | Msa0506360 | 0.828841 | 7.184668e-55 | -8.615850e-47 |
| Msa0414720 | Msa0506360 | 0.941411 | 4.355300e-101 | -8.615850e-47 |
| Msa0459630 | Msa0506360 | 0.952283 | 3.383359e-110 | -8.615850e-47 |
| Msa0480770 | Msa0506360 | 0.813047 | 3.119468e-51 | -8.615850e-47 |
| Msa0265480 | Msa0506360 | 0.806578 | 7.683368e-50 | -8.615850e-47 |
| Msa0340370 | Msa0506360 | 0.824587 | 7.447022e-54 | -8.615850e-47 |
| Msa0506360 | Msa0506370 | 0.849136 | 3.923459e-60 | -8.615850e-47 |
| Msa0506360 | Msa0560280 | 0.818082 | 2.359862e-52 | -8.615850e-47 |
| Msa0506360 | Msa0652700 | 0.815078 | 1.111291e-51 | -8.615850e-47 |
| Msa0506360 | Msa0708600 | 0.817792 | 2.744255e-52 | -8.615850e-47 |
| Msa0506360 | Msa0863940 | 0.810230 | 1.278321e-50 | -8.615850e-47 |
| Msa0506360 | Msa0870120 | 0.816778 | 4.641061e-52 | -8.615850e-47 |
| Msa0506360 | Msa0876790 | 0.806857 | 6.711223e-50 | -8.615850e-47 |
| Msa0506360 | Msa0945230 | 0.811455 | 6.940967e-51 | -8.615850e-47 |
| Msa0506360 | Msa1038940 | 0.803573 | 3.268738e-49 | -8.615850e-47 |
| Msa0506360 | Msa1344330 | 0.834809 | 2.417934e-56 | -8.615850e-47 |
| Msa0506360 | Msa1412410 | 0.816971 | 4.198865e-52 | -8.615850e-47 |
| Msa0506360 | Msa1427860 | 0.809374 | 1.952875e-50 | -8.615850e-47 |
| Msa0506360 | Msa1464020 | 0.831057 | 2.071426e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0506360 | MtrunA17_Chr3g0107731 | 94.196 | 224 | 13 | 0 | 1 | 224 | 1 | 224 | 1.72e-159 | 440 |
| Msa0506360 | MtrunA17_Chr3g0107741 | 89.286 | 224 | 24 | 0 | 1 | 224 | 1 | 224 | 5.08e-150 | 416 |
| Msa0506360 | MtrunA17_Chr2g0312771 | 66.047 | 215 | 73 | 0 | 10 | 224 | 5 | 219 | 3.54e-109 | 312 |
| Msa0506360 | MtrunA17_Chr2g0312751 | 64.186 | 215 | 77 | 0 | 10 | 224 | 5 | 219 | 4.73e-107 | 307 |
| Msa0506360 | MtrunA17_Chr2g0312781 | 63.333 | 210 | 77 | 0 | 10 | 219 | 22 | 231 | 2.76e-103 | 298 |
| Msa0506360 | MtrunA17_Chr2g0312731 | 61.860 | 215 | 82 | 0 | 10 | 224 | 5 | 219 | 1.37e-100 | 291 |
| Msa0506360 | MtrunA17_Chr2g0312811 | 63.134 | 217 | 78 | 1 | 10 | 224 | 5 | 221 | 2.55e-99 | 288 |
| Msa0506360 | MtrunA17_Chr2g0312681 | 60.000 | 215 | 86 | 0 | 10 | 224 | 5 | 219 | 6.14e-98 | 284 |
| Msa0506360 | MtrunA17_Chr2g0312791 | 63.594 | 217 | 77 | 2 | 10 | 224 | 5 | 221 | 4.93e-95 | 276 |
| Msa0506360 | MtrunA17_Chr2g0312691 | 60.829 | 217 | 85 | 0 | 8 | 224 | 3 | 219 | 1.85e-92 | 270 |
| Msa0506360 | MtrunA17_Chr2g0312711 | 59.908 | 217 | 86 | 1 | 8 | 224 | 3 | 218 | 2.70e-90 | 265 |
| Msa0506360 | MtrunA17_Chr8g0357241 | 54.091 | 220 | 100 | 1 | 5 | 224 | 1 | 219 | 2.76e-88 | 259 |
| Msa0506360 | MtrunA17_Chr8g0357211 | 54.091 | 220 | 100 | 1 | 5 | 224 | 1 | 219 | 4.05e-88 | 259 |
| Msa0506360 | MtrunA17_Chr2g0312721 | 57.075 | 212 | 91 | 0 | 10 | 221 | 5 | 216 | 9.29e-88 | 258 |
| Msa0506360 | MtrunA17_Chr5g0433801 | 50.901 | 222 | 106 | 3 | 5 | 224 | 1 | 221 | 3.61e-79 | 236 |
| Msa0506360 | MtrunA17_Chr4g0069471 | 57.692 | 182 | 74 | 2 | 7 | 187 | 23 | 202 | 9.81e-73 | 219 |
| Msa0506360 | MtrunA17_Chr8g0379581 | 39.640 | 222 | 130 | 3 | 5 | 223 | 1 | 221 | 9.51e-47 | 154 |
| Msa0506360 | MtrunA17_Chr8g0363751 | 38.197 | 233 | 127 | 5 | 5 | 223 | 1 | 230 | 2.11e-46 | 153 |
| Msa0506360 | MtrunA17_Chr7g0240681 | 41.827 | 208 | 115 | 5 | 10 | 213 | 8 | 213 | 2.20e-46 | 153 |
| Msa0506360 | MtrunA17_Chr5g0415411 | 41.704 | 223 | 115 | 5 | 5 | 215 | 1 | 220 | 3.35e-46 | 152 |
| Msa0506360 | MtrunA17_Chr1g0196661 | 40.845 | 213 | 119 | 4 | 5 | 213 | 1 | 210 | 3.66e-46 | 152 |
| Msa0506360 | MtrunA17_Chr7g0240541 | 44.388 | 196 | 103 | 6 | 18 | 210 | 16 | 208 | 4.27e-46 | 152 |
| Msa0506360 | MtrunA17_Chr7g0240641 | 39.423 | 208 | 121 | 4 | 9 | 213 | 7 | 212 | 7.07e-45 | 149 |
| Msa0506360 | MtrunA17_Chr3g0132581 | 42.788 | 208 | 116 | 3 | 5 | 210 | 1 | 207 | 1.26e-44 | 148 |
| Msa0506360 | MtrunA17_Chr8g0379561 | 41.872 | 203 | 115 | 2 | 5 | 205 | 2 | 203 | 4.68e-44 | 147 |
| Msa0506360 | MtrunA17_Chr7g0240631 | 38.942 | 208 | 122 | 5 | 9 | 213 | 7 | 212 | 5.87e-44 | 147 |
| Msa0506360 | MtrunA17_Chr7g0240691 | 39.713 | 209 | 120 | 4 | 9 | 213 | 37 | 243 | 1.00e-43 | 147 |
| Msa0506360 | MtrunA17_Chr7g0240531 | 44.221 | 199 | 106 | 5 | 18 | 213 | 16 | 212 | 1.56e-43 | 145 |
| Msa0506360 | MtrunA17_Chr4g0008791 | 38.571 | 210 | 124 | 4 | 7 | 213 | 5 | 212 | 3.60e-43 | 145 |
| Msa0506360 | MtrunA17_Chr4g0008781 | 38.426 | 216 | 123 | 6 | 5 | 213 | 1 | 213 | 1.19e-42 | 143 |
| Msa0506360 | MtrunA17_Chr7g0240551 | 42.211 | 199 | 110 | 5 | 18 | 213 | 16 | 212 | 1.52e-42 | 143 |
| Msa0506360 | MtrunA17_Chr7g0240561 | 41.206 | 199 | 112 | 5 | 18 | 213 | 16 | 212 | 3.30e-42 | 142 |
| Msa0506360 | MtrunA17_Chr7g0240611 | 39.234 | 209 | 122 | 5 | 6 | 213 | 4 | 208 | 4.52e-42 | 142 |
| Msa0506360 | MtrunA17_Chr5g0417011 | 33.971 | 209 | 130 | 3 | 8 | 209 | 6 | 213 | 2.14e-41 | 140 |
| Msa0506360 | MtrunA17_Chr4g0029341 | 39.901 | 203 | 117 | 3 | 15 | 213 | 10 | 211 | 3.26e-41 | 139 |
| Msa0506360 | MtrunA17_Chr1g0196771 | 39.320 | 206 | 118 | 5 | 9 | 210 | 3 | 205 | 1.08e-40 | 138 |
| Msa0506360 | MtrunA17_Chr7g0240511 | 41.667 | 204 | 110 | 6 | 10 | 211 | 8 | 204 | 1.15e-40 | 138 |
| Msa0506360 | MtrunA17_Chr7g0240581 | 39.500 | 200 | 116 | 4 | 9 | 205 | 7 | 204 | 2.11e-40 | 137 |
| Msa0506360 | MtrunA17_Chr1g0196721 | 39.048 | 210 | 123 | 3 | 9 | 214 | 2 | 210 | 4.05e-40 | 137 |
| Msa0506360 | MtrunA17_Chr7g0240671 | 38.579 | 197 | 116 | 5 | 18 | 213 | 13 | 205 | 7.64e-40 | 136 |
| Msa0506360 | MtrunA17_Chr6g0483141 | 37.438 | 203 | 119 | 5 | 23 | 219 | 17 | 217 | 3.56e-39 | 134 |
| Msa0506360 | MtrunA17_Chr1g0196691 | 36.073 | 219 | 134 | 4 | 1 | 214 | 20 | 237 | 9.59e-39 | 134 |
| Msa0506360 | MtrunA17_Chr7g0240521 | 43.455 | 191 | 103 | 5 | 18 | 205 | 23 | 211 | 4.81e-38 | 132 |
| Msa0506360 | MtrunA17_Chr7g0240661 | 40.385 | 208 | 119 | 5 | 7 | 213 | 5 | 208 | 6.05e-38 | 131 |
| Msa0506360 | MtrunA17_Chr7g0240651 | 40.102 | 197 | 113 | 5 | 18 | 213 | 16 | 208 | 2.83e-37 | 129 |
| Msa0506360 | MtrunA17_Chr1g0196711 | 38.967 | 213 | 123 | 5 | 5 | 213 | 1 | 210 | 6.46e-37 | 129 |
| Msa0506360 | MtrunA17_Chr8g0391631 | 42.593 | 162 | 80 | 3 | 5 | 156 | 17 | 175 | 1.63e-36 | 126 |
| Msa0506360 | MtrunA17_Chr1g0212301 | 37.156 | 218 | 130 | 6 | 8 | 220 | 2 | 217 | 9.27e-36 | 125 |
| Msa0506360 | MtrunA17_Chr2g0313561 | 60.294 | 68 | 27 | 0 | 52 | 119 | 1 | 68 | 3.43e-25 | 94.4 |
| Msa0506360 | MtrunA17_Chr7g0263221 | 28.718 | 195 | 128 | 7 | 20 | 210 | 37 | 224 | 1.70e-14 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0506360 | AT1G17180.1 | 65.581 | 215 | 74 | 0 | 10 | 224 | 5 | 219 | 9.04e-105 | 301 |
| Msa0506360 | AT1G78370.1 | 62.085 | 211 | 80 | 0 | 11 | 221 | 6 | 216 | 3.43e-102 | 295 |
| Msa0506360 | AT1G78380.1 | 61.972 | 213 | 81 | 0 | 8 | 220 | 3 | 215 | 1.07e-100 | 291 |
| Msa0506360 | AT1G17170.1 | 63.721 | 215 | 77 | 1 | 10 | 224 | 5 | 218 | 5.37e-99 | 287 |
| Msa0506360 | AT1G78360.1 | 60.092 | 218 | 86 | 1 | 8 | 224 | 3 | 220 | 1.50e-95 | 278 |
| Msa0506360 | AT1G78340.1 | 57.619 | 210 | 89 | 0 | 10 | 219 | 5 | 214 | 3.65e-92 | 270 |
| Msa0506360 | AT1G53680.1 | 56.682 | 217 | 92 | 2 | 10 | 224 | 8 | 224 | 1.61e-89 | 263 |
| Msa0506360 | AT1G78320.1 | 57.746 | 213 | 90 | 0 | 7 | 219 | 2 | 214 | 5.47e-88 | 259 |
| Msa0506360 | AT1G17190.1 | 53.211 | 218 | 102 | 0 | 5 | 222 | 1 | 218 | 1.21e-82 | 246 |
| Msa0506360 | AT3G43800.1 | 52.941 | 221 | 100 | 3 | 5 | 221 | 1 | 221 | 9.03e-82 | 244 |
| Msa0506360 | AT1G78320.2 | 50.235 | 213 | 79 | 1 | 7 | 219 | 2 | 187 | 3.29e-70 | 213 |
| Msa0506360 | AT2G29420.1 | 41.063 | 207 | 119 | 3 | 1 | 205 | 1 | 206 | 4.13e-50 | 163 |
| Msa0506360 | AT1G10360.1 | 42.202 | 218 | 118 | 4 | 5 | 214 | 1 | 218 | 4.11e-49 | 160 |
| Msa0506360 | AT3G09270.1 | 39.130 | 207 | 123 | 2 | 7 | 210 | 4 | 210 | 8.90e-46 | 152 |
| Msa0506360 | AT1G74590.1 | 36.697 | 218 | 130 | 4 | 10 | 220 | 8 | 224 | 4.30e-45 | 150 |
| Msa0506360 | AT1G10370.1 | 40.444 | 225 | 112 | 5 | 5 | 214 | 1 | 218 | 5.34e-45 | 150 |
| Msa0506360 | AT1G59700.1 | 39.906 | 213 | 119 | 4 | 10 | 213 | 7 | 219 | 2.80e-43 | 145 |
| Msa0506360 | AT5G62480.1 | 38.605 | 215 | 119 | 4 | 6 | 209 | 5 | 217 | 5.37e-43 | 145 |
| Msa0506360 | AT1G27130.1 | 36.036 | 222 | 132 | 5 | 5 | 216 | 1 | 222 | 7.13e-42 | 142 |
| Msa0506360 | AT1G69930.1 | 37.264 | 212 | 126 | 3 | 10 | 214 | 13 | 224 | 7.19e-42 | 142 |
| Msa0506360 | AT2G29440.1 | 41.379 | 203 | 107 | 7 | 10 | 205 | 7 | 204 | 5.88e-41 | 139 |
| Msa0506360 | AT1G59670.1 | 38.636 | 220 | 126 | 5 | 10 | 220 | 7 | 226 | 6.43e-41 | 139 |
| Msa0506360 | AT2G29490.1 | 37.379 | 206 | 125 | 2 | 7 | 209 | 5 | 209 | 2.27e-40 | 138 |
| Msa0506360 | AT2G29480.1 | 38.424 | 203 | 119 | 4 | 7 | 205 | 5 | 205 | 2.52e-40 | 138 |
| Msa0506360 | AT2G29450.1 | 38.739 | 222 | 121 | 8 | 5 | 217 | 1 | 216 | 1.19e-39 | 136 |
| Msa0506360 | AT1G27140.1 | 34.821 | 224 | 133 | 6 | 5 | 216 | 1 | 223 | 2.14e-38 | 133 |
| Msa0506360 | AT2G29470.1 | 37.019 | 208 | 124 | 5 | 7 | 209 | 5 | 210 | 3.08e-37 | 130 |
| Msa0506360 | AT2G29460.1 | 36.946 | 203 | 122 | 4 | 7 | 205 | 5 | 205 | 1.62e-35 | 125 |
| Msa0506360 | AT1G69920.1 | 30.045 | 223 | 147 | 4 | 1 | 214 | 26 | 248 | 2.81e-32 | 118 |
| Msa0506360 | AT5G62480.2 | 30.698 | 215 | 110 | 5 | 6 | 209 | 5 | 191 | 4.49e-24 | 95.9 |
| Msa0506360 | AT5G62480.3 | 30.698 | 215 | 109 | 5 | 6 | 209 | 5 | 190 | 5.48e-24 | 95.5 |
| Msa0506360 | AT5G02790.1 | 30.065 | 153 | 100 | 4 | 59 | 210 | 80 | 226 | 3.48e-11 | 61.2 |
Find 56 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGAGACAAGACATATTT+TGG | 0.189440 | 3_4:+52639998 | Msa0506360:CDS |
| CTCTTATTCCCTTCACTAGT+TGG | 0.260211 | 3_4:+52640050 | Msa0506360:CDS |
| AGCGATCACAAGCCAAGTTT+TGG | 0.291618 | 3_4:+52639061 | Msa0506360:CDS |
| CCTCACCCTCACAAAATCTA+TGG | 0.311690 | 3_4:+52640181 | Msa0506360:CDS |
| TTGGCCCAAGCTACAAGCTT+AGG | 0.347353 | 3_4:-52640121 | None:intergenic |
| CTAAACAATGAGTCAATATA+TGG | 0.352448 | 3_4:+52638768 | Msa0506360:exon |
| TTGGCTTGTGATCGCTTGTA+AGG | 0.379033 | 3_4:-52639054 | None:intergenic |
| TTTCCATTATGAATCAAAAC+CGG | 0.387956 | 3_4:-52638952 | None:intergenic |
| GGACTTGAATAGAGATCGTT+GGG | 0.394706 | 3_4:+52640232 | Msa0506360:exon |
| ATATTAAGTGATTCACATAT+AGG | 0.400119 | 3_4:-52638976 | None:intergenic |
| GTGCCCTAAGCTTGTAGCTT+GGG | 0.417667 | 3_4:+52640117 | Msa0506360:CDS |
| TTAGATGATTTAGATCTTTG+TGG | 0.420089 | 3_4:-52638699 | None:intergenic |
| TGGCCCAAGCTACAAGCTTA+GGG | 0.446898 | 3_4:-52640120 | None:intergenic |
| AGCTTGTAGCTTGGGCCAAA+AGG | 0.454879 | 3_4:+52640125 | Msa0506360:CDS |
| GAATGCTTGAAGACTCTAGA+AGG | 0.458394 | 3_4:+52639971 | Msa0506360:CDS |
| TTGAGTACATTGATGAAGCT+TGG | 0.466341 | 3_4:+52639001 | Msa0506360:CDS |
| TAGATGATTTAGATCTTTGT+GGG | 0.467058 | 3_4:-52638698 | None:intergenic |
| GATATACAACATTGGAAAGA+AGG | 0.483460 | 3_4:+52639898 | Msa0506360:intron |
| AATGTAATCTCCCCAAAACT+TGG | 0.487995 | 3_4:-52639073 | None:intergenic |
| ACTCTCATTCCATATGAGCT+TGG | 0.497119 | 3_4:-52638823 | None:intergenic |
| TTCCATTATGAATCAAAACC+GGG | 0.499687 | 3_4:-52638951 | None:intergenic |
| AGCTTGGGCCAAAAGGTGTA+TGG | 0.501382 | 3_4:+52640132 | Msa0506360:CDS |
| TTTACACGTACGAGACATAT+GGG | 0.502836 | 3_4:+52640074 | Msa0506360:CDS |
| AAGACTCTAGAAGGTGAGCT+TGG | 0.503893 | 3_4:+52639980 | Msa0506360:CDS |
| GGCCAAAAGGTGTATGGAAA+AGG | 0.504837 | 3_4:+52640138 | Msa0506360:CDS |
| CTGCACACGAAGTTCTTCTC+AGG | 0.509673 | 3_4:-52640268 | None:intergenic |
| AGAGATCGTTGGGGATTGCA+TGG | 0.510596 | 3_4:+52640242 | Msa0506360:exon |
| AAAATTGCATTGGAAGAGAA+GGG | 0.514397 | 3_4:+52638847 | Msa0506360:CDS |
| CCCGGTTTACAAAATGATCC+CGG | 0.518241 | 3_4:+52638933 | Msa0506360:CDS |
| AAGAAGGTATGGACAGGAAA+GGG | 0.519335 | 3_4:+52639914 | Msa0506360:CDS |
| AGTGCCCTAAGCTTGTAGCT+TGG | 0.529879 | 3_4:+52640116 | Msa0506360:CDS |
| AATGAGAGTGAAAATTGCAT+TGG | 0.532849 | 3_4:+52638837 | Msa0506360:CDS |
| ACAACATTGGAAAGAAGGTA+TGG | 0.535319 | 3_4:+52639903 | Msa0506360:CDS |
| AAGGGTGAAGAACAAGAAGA+AGG | 0.543295 | 3_4:+52639932 | Msa0506360:CDS |
| TGACTTTGGGTATGTTGATG+TGG | 0.546781 | 3_4:+52640027 | Msa0506360:CDS |
| GAAAATTGCATTGGAAGAGA+AGG | 0.550919 | 3_4:+52638846 | Msa0506360:CDS |
| TGGACTTGAATAGAGATCGT+TGG | 0.553472 | 3_4:+52640231 | Msa0506360:exon |
| AATGAGTCAATATATGGCTG+AGG | 0.555908 | 3_4:+52638774 | Msa0506360:exon |
| ATTGGAAAGAAGGTATGGAC+AGG | 0.560806 | 3_4:+52639908 | Msa0506360:CDS |
| TGATCGCTTGTAAGGGTCAG+AGG | 0.571746 | 3_4:-52639046 | None:intergenic |
| CGTGTAAAACCAACTAGTGA+AGG | 0.583669 | 3_4:-52640059 | None:intergenic |
| GTTTATTATAATATAATCAG+TGG | 0.583859 | 3_4:-52640443 | None:intergenic |
| GGGTCAGAGGGCAAAAGAGA+AGG | 0.589806 | 3_4:-52639033 | None:intergenic |
| TGGCTTGTGATCGCTTGTAA+GGG | 0.589840 | 3_4:-52639053 | None:intergenic |
| GTGAGGGTGAGGAAGTGACT+TGG | 0.599429 | 3_4:-52640170 | None:intergenic |
| ATGAGTCAATATATGGCTGA+GGG | 0.603761 | 3_4:+52638775 | Msa0506360:CDS |
| AAAGAAGGTATGGACAGGAA+AGG | 0.623553 | 3_4:+52639913 | Msa0506360:CDS |
| TTGATGTAGATATACAACAT+TGG | 0.625837 | 3_4:+52639890 | Msa0506360:intron |
| GAGATCGTTGGGGATTGCAT+GGG | 0.626280 | 3_4:+52640243 | Msa0506360:exon |
| GTGTATGGAAAAGGAGAGTG+TGG | 0.633165 | 3_4:+52640147 | Msa0506360:CDS |
| GTGTAAAACCAACTAGTGAA+GGG | 0.637121 | 3_4:-52640058 | None:intergenic |
| GATCGCTTGTAAGGGTCAGA+GGG | 0.649504 | 3_4:-52639045 | None:intergenic |
| AAATTGCATTGGAAGAGAAG+GGG | 0.654003 | 3_4:+52638848 | Msa0506360:CDS |
| AATTGCATTGGAAGAGAAGG+GGG | 0.673032 | 3_4:+52638849 | Msa0506360:CDS |
| ATATATGGCTGAGGGCAATG+TGG | 0.718578 | 3_4:+52638783 | Msa0506360:CDS |
| GACTTGAATAGAGATCGTTG+GGG | 0.727300 | 3_4:+52640233 | Msa0506360:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATAGATAGATTTTTAT+AGG | + | chr3_4:52639237-52639256 | Msa0506360:intron | 10.0% |
| !!! | CTTTAAAAAAATTATATGTT+TGG | - | chr3_4:52639827-52639846 | None:intergenic | 10.0% |
| !!! | ATAAGTTTATGTTTTTTTTA+AGG | + | chr3_4:52640335-52640354 | Msa0506360:three_prime_UTR | 10.0% |
| !!! | TTTAATAGATAGATTTTTAT+AGG | + | chr3_4:52639237-52639256 | Msa0506360:intron | 10.0% |
| !!! | CTTTAAAAAAATTATATGTT+TGG | - | chr3_4:52639827-52639846 | None:intergenic | 10.0% |
| !!! | ATAAGTTTATGTTTTTTTTA+AGG | + | chr3_4:52640335-52640354 | Msa0506360:three_prime_UTR | 10.0% |
| !!! | AAATATTGGTAGTTTAATAA+GGG | + | chr3_4:52639261-52639280 | Msa0506360:intron | 15.0% |
| !!! | AAATATTGGTAGTTTAATAA+GGG | + | chr3_4:52639261-52639280 | Msa0506360:intron | 15.0% |
| !! | ATATTAAGTGATTCACATAT+AGG | - | chr3_4:52638979-52638998 | None:intergenic | 20.0% |
| !!! | AGATTTTTATAGGCAAATAT+TGG | + | chr3_4:52639247-52639266 | Msa0506360:intron | 20.0% |
| !!! | CAAATATTGGTAGTTTAATA+AGG | + | chr3_4:52639260-52639279 | Msa0506360:intron | 20.0% |
| !!! | AATATTGGTAGTTTAATAAG+GGG | + | chr3_4:52639262-52639281 | Msa0506360:intron | 20.0% |
| !!! | TCAAGTCTTGATTATTTTTT+TGG | + | chr3_4:52639407-52639426 | Msa0506360:intron | 20.0% |
| !! | TATCTACTTAAGCATTAATA+TGG | - | chr3_4:52639552-52639571 | None:intergenic | 20.0% |
| !! | CAAATATGCTACAATATTTA+TGG | - | chr3_4:52639665-52639684 | None:intergenic | 20.0% |
| !! | CATAAATATTGTAGCATATT+TGG | + | chr3_4:52639663-52639682 | Msa0506360:intron | 20.0% |
| !!! | TTTTTAAAGAGTTGATTCAT+AGG | + | chr3_4:52639838-52639857 | Msa0506360:intron | 20.0% |
| !!! | TTTTAAAGAGTTGATTCATA+GGG | + | chr3_4:52639839-52639858 | Msa0506360:intron | 20.0% |
| !!! | TTTTTTATCAGCTTATTAGA+TGG | - | chr3_4:52640409-52640428 | None:intergenic | 20.0% |
| !! | AATAAGCTGATAAAAAAAGA+AGG | + | chr3_4:52640412-52640431 | Msa0506360:three_prime_UTR | 20.0% |
| !! | ATATTAAGTGATTCACATAT+AGG | - | chr3_4:52638979-52638998 | None:intergenic | 20.0% |
| !!! | AGATTTTTATAGGCAAATAT+TGG | + | chr3_4:52639247-52639266 | Msa0506360:intron | 20.0% |
| !!! | CAAATATTGGTAGTTTAATA+AGG | + | chr3_4:52639260-52639279 | Msa0506360:intron | 20.0% |
| !!! | AATATTGGTAGTTTAATAAG+GGG | + | chr3_4:52639262-52639281 | Msa0506360:intron | 20.0% |
| !!! | TCAAGTCTTGATTATTTTTT+TGG | + | chr3_4:52639407-52639426 | Msa0506360:intron | 20.0% |
| !! | TATCTACTTAAGCATTAATA+TGG | - | chr3_4:52639552-52639571 | None:intergenic | 20.0% |
| !! | CAAATATGCTACAATATTTA+TGG | - | chr3_4:52639665-52639684 | None:intergenic | 20.0% |
| !! | CATAAATATTGTAGCATATT+TGG | + | chr3_4:52639663-52639682 | Msa0506360:intron | 20.0% |
| !!! | TTTTTAAAGAGTTGATTCAT+AGG | + | chr3_4:52639838-52639857 | Msa0506360:intron | 20.0% |
| !!! | TTTTAAAGAGTTGATTCATA+GGG | + | chr3_4:52639839-52639858 | Msa0506360:intron | 20.0% |
| !!! | TTTTTTATCAGCTTATTAGA+TGG | - | chr3_4:52640409-52640428 | None:intergenic | 20.0% |
| !! | AATAAGCTGATAAAAAAAGA+AGG | + | chr3_4:52640412-52640431 | Msa0506360:three_prime_UTR | 20.0% |
| ! | TAGATGATTTAGATCTTTGT+GGG | - | chr3_4:52638701-52638720 | None:intergenic | 25.0% |
| ! | TTAGATGATTTAGATCTTTG+TGG | - | chr3_4:52638702-52638721 | None:intergenic | 25.0% |
| ! | CTAAACAATGAGTCAATATA+TGG | + | chr3_4:52638768-52638787 | Msa0506360:exon | 25.0% |
| ! | TTTCCATTATGAATCAAAAC+CGG | - | chr3_4:52638955-52638974 | None:intergenic | 25.0% |
| !! | TATGTGTGTTATTATGTTCA+AGG | + | chr3_4:52639123-52639142 | Msa0506360:intron | 25.0% |
| ! | TTCATAAAGATTGTCTATGA+AGG | - | chr3_4:52639384-52639403 | None:intergenic | 25.0% |
| !!! | GTCTTGATTATTTTTTTGGT+TGG | + | chr3_4:52639411-52639430 | Msa0506360:intron | 25.0% |
| !!! | TGACCTATTTTCTTTTTCAA+CGG | - | chr3_4:52639594-52639613 | None:intergenic | 25.0% |
| ! | CAATTTACAATTTACATGAG+AGG | + | chr3_4:52639755-52639774 | Msa0506360:intron | 25.0% |
| ! | TTGATGTAGATATACAACAT+TGG | + | chr3_4:52639890-52639909 | Msa0506360:intron | 25.0% |
| ! | ATGCAATATAAAAAGAAGCA+TGG | + | chr3_4:52640211-52640230 | Msa0506360:CDS | 25.0% |
| ! | TAGATGATTTAGATCTTTGT+GGG | - | chr3_4:52638701-52638720 | None:intergenic | 25.0% |
| ! | TTAGATGATTTAGATCTTTG+TGG | - | chr3_4:52638702-52638721 | None:intergenic | 25.0% |
| ! | CTAAACAATGAGTCAATATA+TGG | + | chr3_4:52638768-52638787 | Msa0506360:exon | 25.0% |
| ! | TTTCCATTATGAATCAAAAC+CGG | - | chr3_4:52638955-52638974 | None:intergenic | 25.0% |
| !! | TATGTGTGTTATTATGTTCA+AGG | + | chr3_4:52639123-52639142 | Msa0506360:intron | 25.0% |
| ! | TTCATAAAGATTGTCTATGA+AGG | - | chr3_4:52639384-52639403 | None:intergenic | 25.0% |
| !!! | GTCTTGATTATTTTTTTGGT+TGG | + | chr3_4:52639411-52639430 | Msa0506360:intron | 25.0% |
| !!! | TGACCTATTTTCTTTTTCAA+CGG | - | chr3_4:52639594-52639613 | None:intergenic | 25.0% |
| ! | CAATTTACAATTTACATGAG+AGG | + | chr3_4:52639755-52639774 | Msa0506360:intron | 25.0% |
| ! | TTGATGTAGATATACAACAT+TGG | + | chr3_4:52639890-52639909 | Msa0506360:intron | 25.0% |
| ! | ATGCAATATAAAAAGAAGCA+TGG | + | chr3_4:52640211-52640230 | Msa0506360:CDS | 25.0% |
| !!! | ATGTGGTTTTGTTGGATTTT+TGG | + | chr3_4:52638800-52638819 | Msa0506360:CDS | 30.0% |
| AATGAGAGTGAAAATTGCAT+TGG | + | chr3_4:52638837-52638856 | Msa0506360:CDS | 30.0% | |
| AAAATTGCATTGGAAGAGAA+GGG | + | chr3_4:52638847-52638866 | Msa0506360:CDS | 30.0% | |
| TTCCATTATGAATCAAAACC+GGG | - | chr3_4:52638954-52638973 | None:intergenic | 30.0% | |
| TAGTGATGTCTATAAAGCTT+TGG | - | chr3_4:52639168-52639187 | None:intergenic | 30.0% | |
| GAAAAAAATGTAGTTGAGAG+TGG | - | chr3_4:52639527-52639546 | None:intergenic | 30.0% | |
| CTTCCGTTGAAAAAGAAAAT+AGG | + | chr3_4:52639588-52639607 | Msa0506360:intron | 30.0% | |
| ! | TTGTAAATTGTTTGCCACTT+GGG | - | chr3_4:52639745-52639764 | None:intergenic | 30.0% |
| ATTGTAAATTGTTTGCCACT+TGG | - | chr3_4:52639746-52639765 | None:intergenic | 30.0% | |
| GGTATCATGGTCTAATTTAT+TGG | + | chr3_4:52639860-52639879 | Msa0506360:intron | 30.0% | |
| GATATACAACATTGGAAAGA+AGG | + | chr3_4:52639898-52639917 | Msa0506360:intron | 30.0% | |
| ! | CAAAACCATAGATTTTGTGA+GGG | - | chr3_4:52640189-52640208 | None:intergenic | 30.0% |
| !!! | ATGTGGTTTTGTTGGATTTT+TGG | + | chr3_4:52638800-52638819 | Msa0506360:CDS | 30.0% |
| AATGAGAGTGAAAATTGCAT+TGG | + | chr3_4:52638837-52638856 | Msa0506360:CDS | 30.0% | |
| AAAATTGCATTGGAAGAGAA+GGG | + | chr3_4:52638847-52638866 | Msa0506360:CDS | 30.0% | |
| TTCCATTATGAATCAAAACC+GGG | - | chr3_4:52638954-52638973 | None:intergenic | 30.0% | |
| TAGTGATGTCTATAAAGCTT+TGG | - | chr3_4:52639168-52639187 | None:intergenic | 30.0% | |
| GAAAAAAATGTAGTTGAGAG+TGG | - | chr3_4:52639527-52639546 | None:intergenic | 30.0% | |
| CTTCCGTTGAAAAAGAAAAT+AGG | + | chr3_4:52639588-52639607 | Msa0506360:intron | 30.0% | |
| ! | TTGTAAATTGTTTGCCACTT+GGG | - | chr3_4:52639745-52639764 | None:intergenic | 30.0% |
| ATTGTAAATTGTTTGCCACT+TGG | - | chr3_4:52639746-52639765 | None:intergenic | 30.0% | |
| GGTATCATGGTCTAATTTAT+TGG | + | chr3_4:52639860-52639879 | Msa0506360:intron | 30.0% | |
| GATATACAACATTGGAAAGA+AGG | + | chr3_4:52639898-52639917 | Msa0506360:intron | 30.0% | |
| ! | CAAAACCATAGATTTTGTGA+GGG | - | chr3_4:52640189-52640208 | None:intergenic | 30.0% |
| AATGAGTCAATATATGGCTG+AGG | + | chr3_4:52638774-52638793 | Msa0506360:exon | 35.0% | |
| ATGAGTCAATATATGGCTGA+GGG | + | chr3_4:52638775-52638794 | Msa0506360:CDS | 35.0% | |
| GAAAATTGCATTGGAAGAGA+AGG | + | chr3_4:52638846-52638865 | Msa0506360:CDS | 35.0% | |
| AAATTGCATTGGAAGAGAAG+GGG | + | chr3_4:52638848-52638867 | Msa0506360:CDS | 35.0% | |
| !!! | ATCCCGGTTTTGATTCATAA+TGG | + | chr3_4:52638949-52638968 | Msa0506360:CDS | 35.0% |
| TTGAGTACATTGATGAAGCT+TGG | + | chr3_4:52639001-52639020 | Msa0506360:CDS | 35.0% | |
| AATGTAATCTCCCCAAAACT+TGG | - | chr3_4:52639076-52639095 | None:intergenic | 35.0% | |
| ATGATCGATCGTTAAGAATG+AGG | - | chr3_4:52639330-52639349 | None:intergenic | 35.0% | |
| !!! | TTTTTGGTTGGTCACGTTAT+TGG | + | chr3_4:52639423-52639442 | Msa0506360:intron | 35.0% |
| CAAAATTAGTCCGACAAAGA+TGG | - | chr3_4:52639462-52639481 | None:intergenic | 35.0% | |
| ! | CATCTTTGTCGGACTAATTT+TGG | + | chr3_4:52639460-52639479 | Msa0506360:intron | 35.0% |
| ! | AGTTGATTCATAGGGTATCA+TGG | + | chr3_4:52639847-52639866 | Msa0506360:intron | 35.0% |
| ACAACATTGGAAAGAAGGTA+TGG | + | chr3_4:52639903-52639922 | Msa0506360:CDS | 35.0% | |
| ! | CTTGGAGACAAGACATATTT+TGG | + | chr3_4:52639998-52640017 | Msa0506360:CDS | 35.0% |
| !!! | TATTTTGGTGGAGATGACTT+TGG | + | chr3_4:52640013-52640032 | Msa0506360:CDS | 35.0% |
| !! | ATTTTGGTGGAGATGACTTT+GGG | + | chr3_4:52640014-52640033 | Msa0506360:CDS | 35.0% |
| GTGTAAAACCAACTAGTGAA+GGG | - | chr3_4:52640061-52640080 | None:intergenic | 35.0% | |
| ! | TTTTACACGTACGAGACATA+TGG | + | chr3_4:52640073-52640092 | Msa0506360:CDS | 35.0% |
| TTTACACGTACGAGACATAT+GGG | + | chr3_4:52640074-52640093 | Msa0506360:CDS | 35.0% | |
| ! | GCAAAACCATAGATTTTGTG+AGG | - | chr3_4:52640190-52640209 | None:intergenic | 35.0% |
| AATGAGTCAATATATGGCTG+AGG | + | chr3_4:52638774-52638793 | Msa0506360:exon | 35.0% | |
| ATGAGTCAATATATGGCTGA+GGG | + | chr3_4:52638775-52638794 | Msa0506360:CDS | 35.0% | |
| GAAAATTGCATTGGAAGAGA+AGG | + | chr3_4:52638846-52638865 | Msa0506360:CDS | 35.0% | |
| AAATTGCATTGGAAGAGAAG+GGG | + | chr3_4:52638848-52638867 | Msa0506360:CDS | 35.0% | |
| !!! | ATCCCGGTTTTGATTCATAA+TGG | + | chr3_4:52638949-52638968 | Msa0506360:CDS | 35.0% |
| TTGAGTACATTGATGAAGCT+TGG | + | chr3_4:52639001-52639020 | Msa0506360:CDS | 35.0% | |
| AATGTAATCTCCCCAAAACT+TGG | - | chr3_4:52639076-52639095 | None:intergenic | 35.0% | |
| ATGATCGATCGTTAAGAATG+AGG | - | chr3_4:52639330-52639349 | None:intergenic | 35.0% | |
| !!! | TTTTTGGTTGGTCACGTTAT+TGG | + | chr3_4:52639423-52639442 | Msa0506360:intron | 35.0% |
| CAAAATTAGTCCGACAAAGA+TGG | - | chr3_4:52639462-52639481 | None:intergenic | 35.0% | |
| ! | CATCTTTGTCGGACTAATTT+TGG | + | chr3_4:52639460-52639479 | Msa0506360:intron | 35.0% |
| ! | AGTTGATTCATAGGGTATCA+TGG | + | chr3_4:52639847-52639866 | Msa0506360:intron | 35.0% |
| ACAACATTGGAAAGAAGGTA+TGG | + | chr3_4:52639903-52639922 | Msa0506360:CDS | 35.0% | |
| ! | CTTGGAGACAAGACATATTT+TGG | + | chr3_4:52639998-52640017 | Msa0506360:CDS | 35.0% |
| !!! | TATTTTGGTGGAGATGACTT+TGG | + | chr3_4:52640013-52640032 | Msa0506360:CDS | 35.0% |
| !! | ATTTTGGTGGAGATGACTTT+GGG | + | chr3_4:52640014-52640033 | Msa0506360:CDS | 35.0% |
| GTGTAAAACCAACTAGTGAA+GGG | - | chr3_4:52640061-52640080 | None:intergenic | 35.0% | |
| ! | TTTTACACGTACGAGACATA+TGG | + | chr3_4:52640073-52640092 | Msa0506360:CDS | 35.0% |
| TTTACACGTACGAGACATAT+GGG | + | chr3_4:52640074-52640093 | Msa0506360:CDS | 35.0% | |
| ! | GCAAAACCATAGATTTTGTG+AGG | - | chr3_4:52640190-52640209 | None:intergenic | 35.0% |
| !!! | GATTTTTGGCCAAGCTCATA+TGG | + | chr3_4:52638814-52638833 | Msa0506360:CDS | 40.0% |
| ACTCTCATTCCATATGAGCT+TGG | - | chr3_4:52638826-52638845 | None:intergenic | 40.0% | |
| AATTGCATTGGAAGAGAAGG+GGG | + | chr3_4:52638849-52638868 | Msa0506360:CDS | 40.0% | |
| !! | TCTGCTTTTAGAGATGAACC+CGG | + | chr3_4:52638915-52638934 | Msa0506360:CDS | 40.0% |
| ! | ACCGGGATCATTTTGTAAAC+CGG | - | chr3_4:52638937-52638956 | None:intergenic | 40.0% |
| ! | AGGGCAAAAGAGAAGGTTTT+TGG | - | chr3_4:52639029-52639048 | None:intergenic | 40.0% |
| GATCGTTAAGAATGAGGTCT+AGG | - | chr3_4:52639324-52639343 | None:intergenic | 40.0% | |
| ! | GAAGTATCCACCATCTTTGT+CGG | + | chr3_4:52639449-52639468 | Msa0506360:intron | 40.0% |
| AATTAGTCCGACAAAGATGG+TGG | - | chr3_4:52639459-52639478 | None:intergenic | 40.0% | |
| !! | TTTGTCGGACTAATTTTGGC+CGG | + | chr3_4:52639464-52639483 | Msa0506360:intron | 40.0% |
| !! | CTAATTTTGGCCGGAGATTA+TGG | + | chr3_4:52639473-52639492 | Msa0506360:intron | 40.0% |
| !!! | TTATGGCTAGCCACTTTTAG+TGG | + | chr3_4:52639490-52639509 | Msa0506360:intron | 40.0% |
| !!! | TATGGCTAGCCACTTTTAGT+GGG | + | chr3_4:52639491-52639510 | Msa0506360:intron | 40.0% |
| AACTGGAAACCCACTAAAAG+TGG | - | chr3_4:52639503-52639522 | None:intergenic | 40.0% | |
| ATGTAGTTGAGAGTGGAAAC+TGG | - | chr3_4:52639520-52639539 | None:intergenic | 40.0% | |
| TATATCCATTCAAGCCCAAG+TGG | + | chr3_4:52639728-52639747 | Msa0506360:intron | 40.0% | |
| ! | ATTGGAAAGAAGGTATGGAC+AGG | + | chr3_4:52639908-52639927 | Msa0506360:CDS | 40.0% |
| ! | AAAGAAGGTATGGACAGGAA+AGG | + | chr3_4:52639913-52639932 | Msa0506360:CDS | 40.0% |
| ! | AAGAAGGTATGGACAGGAAA+GGG | + | chr3_4:52639914-52639933 | Msa0506360:CDS | 40.0% |
| AAGGGTGAAGAACAAGAAGA+AGG | + | chr3_4:52639932-52639951 | Msa0506360:CDS | 40.0% | |
| GAATGCTTGAAGACTCTAGA+AGG | + | chr3_4:52639971-52639990 | Msa0506360:CDS | 40.0% | |
| !! | GGAGACAAGACATATTTTGG+TGG | + | chr3_4:52640001-52640020 | Msa0506360:CDS | 40.0% |
| TGACTTTGGGTATGTTGATG+TGG | + | chr3_4:52640027-52640046 | Msa0506360:CDS | 40.0% | |
| CTCTTATTCCCTTCACTAGT+TGG | + | chr3_4:52640050-52640069 | Msa0506360:CDS | 40.0% | |
| CGTGTAAAACCAACTAGTGA+AGG | - | chr3_4:52640062-52640081 | None:intergenic | 40.0% | |
| ! | CTCCTTTTCCATACACCTTT+TGG | - | chr3_4:52640143-52640162 | None:intergenic | 40.0% |
| TGGACTTGAATAGAGATCGT+TGG | + | chr3_4:52640231-52640250 | Msa0506360:exon | 40.0% | |
| GGACTTGAATAGAGATCGTT+GGG | + | chr3_4:52640232-52640251 | Msa0506360:exon | 40.0% | |
| GACTTGAATAGAGATCGTTG+GGG | + | chr3_4:52640233-52640252 | Msa0506360:exon | 40.0% | |
| !!! | GATTTTTGGCCAAGCTCATA+TGG | + | chr3_4:52638814-52638833 | Msa0506360:CDS | 40.0% |
| ACTCTCATTCCATATGAGCT+TGG | - | chr3_4:52638826-52638845 | None:intergenic | 40.0% | |
| AATTGCATTGGAAGAGAAGG+GGG | + | chr3_4:52638849-52638868 | Msa0506360:CDS | 40.0% | |
| !! | TCTGCTTTTAGAGATGAACC+CGG | + | chr3_4:52638915-52638934 | Msa0506360:CDS | 40.0% |
| ! | ACCGGGATCATTTTGTAAAC+CGG | - | chr3_4:52638937-52638956 | None:intergenic | 40.0% |
| ! | AGGGCAAAAGAGAAGGTTTT+TGG | - | chr3_4:52639029-52639048 | None:intergenic | 40.0% |
| GATCGTTAAGAATGAGGTCT+AGG | - | chr3_4:52639324-52639343 | None:intergenic | 40.0% | |
| ! | GAAGTATCCACCATCTTTGT+CGG | + | chr3_4:52639449-52639468 | Msa0506360:intron | 40.0% |
| AATTAGTCCGACAAAGATGG+TGG | - | chr3_4:52639459-52639478 | None:intergenic | 40.0% | |
| !! | TTTGTCGGACTAATTTTGGC+CGG | + | chr3_4:52639464-52639483 | Msa0506360:intron | 40.0% |
| !! | CTAATTTTGGCCGGAGATTA+TGG | + | chr3_4:52639473-52639492 | Msa0506360:intron | 40.0% |
| !!! | TTATGGCTAGCCACTTTTAG+TGG | + | chr3_4:52639490-52639509 | Msa0506360:intron | 40.0% |
| !!! | TATGGCTAGCCACTTTTAGT+GGG | + | chr3_4:52639491-52639510 | Msa0506360:intron | 40.0% |
| AACTGGAAACCCACTAAAAG+TGG | - | chr3_4:52639503-52639522 | None:intergenic | 40.0% | |
| ATGTAGTTGAGAGTGGAAAC+TGG | - | chr3_4:52639520-52639539 | None:intergenic | 40.0% | |
| TATATCCATTCAAGCCCAAG+TGG | + | chr3_4:52639728-52639747 | Msa0506360:intron | 40.0% | |
| ! | ATTGGAAAGAAGGTATGGAC+AGG | + | chr3_4:52639908-52639927 | Msa0506360:CDS | 40.0% |
| ! | AAAGAAGGTATGGACAGGAA+AGG | + | chr3_4:52639913-52639932 | Msa0506360:CDS | 40.0% |
| ! | AAGAAGGTATGGACAGGAAA+GGG | + | chr3_4:52639914-52639933 | Msa0506360:CDS | 40.0% |
| AAGGGTGAAGAACAAGAAGA+AGG | + | chr3_4:52639932-52639951 | Msa0506360:CDS | 40.0% | |
| GAATGCTTGAAGACTCTAGA+AGG | + | chr3_4:52639971-52639990 | Msa0506360:CDS | 40.0% | |
| !! | GGAGACAAGACATATTTTGG+TGG | + | chr3_4:52640001-52640020 | Msa0506360:CDS | 40.0% |
| TGACTTTGGGTATGTTGATG+TGG | + | chr3_4:52640027-52640046 | Msa0506360:CDS | 40.0% | |
| CTCTTATTCCCTTCACTAGT+TGG | + | chr3_4:52640050-52640069 | Msa0506360:CDS | 40.0% | |
| CGTGTAAAACCAACTAGTGA+AGG | - | chr3_4:52640062-52640081 | None:intergenic | 40.0% | |
| ! | CTCCTTTTCCATACACCTTT+TGG | - | chr3_4:52640143-52640162 | None:intergenic | 40.0% |
| TGGACTTGAATAGAGATCGT+TGG | + | chr3_4:52640231-52640250 | Msa0506360:exon | 40.0% | |
| GGACTTGAATAGAGATCGTT+GGG | + | chr3_4:52640232-52640251 | Msa0506360:exon | 40.0% | |
| GACTTGAATAGAGATCGTTG+GGG | + | chr3_4:52640233-52640252 | Msa0506360:exon | 40.0% | |
| ATATATGGCTGAGGGCAATG+TGG | + | chr3_4:52638783-52638802 | Msa0506360:CDS | 45.0% | |
| !!! | TGAGGGCAATGTGGTTTTGT+TGG | + | chr3_4:52638792-52638811 | Msa0506360:CDS | 45.0% |
| ! | CCGGGATCATTTTGTAAACC+GGG | - | chr3_4:52638936-52638955 | None:intergenic | 45.0% |
| CCCGGTTTACAAAATGATCC+CGG | + | chr3_4:52638933-52638952 | Msa0506360:CDS | 45.0% | |
| ! | TGGCTTGTGATCGCTTGTAA+GGG | - | chr3_4:52639056-52639075 | None:intergenic | 45.0% |
| !! | TTGGCTTGTGATCGCTTGTA+AGG | - | chr3_4:52639057-52639076 | None:intergenic | 45.0% |
| ! | AGCGATCACAAGCCAAGTTT+TGG | + | chr3_4:52639061-52639080 | Msa0506360:CDS | 45.0% |
| ! | GCGATCACAAGCCAAGTTTT+GGG | + | chr3_4:52639062-52639081 | Msa0506360:CDS | 45.0% |
| ! | CGATCACAAGCCAAGTTTTG+GGG | + | chr3_4:52639063-52639082 | Msa0506360:CDS | 45.0% |
| ! | AAGTGGCTAGCCATAATCTC+CGG | - | chr3_4:52639486-52639505 | None:intergenic | 45.0% |
| ! | AAGACTCTAGAAGGTGAGCT+TGG | + | chr3_4:52639980-52639999 | Msa0506360:CDS | 45.0% |
| ! | GGCCAAAAGGTGTATGGAAA+AGG | + | chr3_4:52640138-52640157 | Msa0506360:CDS | 45.0% |
| GTGTATGGAAAAGGAGAGTG+TGG | + | chr3_4:52640147-52640166 | Msa0506360:CDS | 45.0% | |
| ! | CCATAGATTTTGTGAGGGTG+AGG | - | chr3_4:52640184-52640203 | None:intergenic | 45.0% |
| CCTCACCCTCACAAAATCTA+TGG | + | chr3_4:52640181-52640200 | Msa0506360:CDS | 45.0% | |
| ATATATGGCTGAGGGCAATG+TGG | + | chr3_4:52638783-52638802 | Msa0506360:CDS | 45.0% | |
| !!! | TGAGGGCAATGTGGTTTTGT+TGG | + | chr3_4:52638792-52638811 | Msa0506360:CDS | 45.0% |
| ! | CCGGGATCATTTTGTAAACC+GGG | - | chr3_4:52638936-52638955 | None:intergenic | 45.0% |
| CCCGGTTTACAAAATGATCC+CGG | + | chr3_4:52638933-52638952 | Msa0506360:CDS | 45.0% | |
| ! | TGGCTTGTGATCGCTTGTAA+GGG | - | chr3_4:52639056-52639075 | None:intergenic | 45.0% |
| !! | TTGGCTTGTGATCGCTTGTA+AGG | - | chr3_4:52639057-52639076 | None:intergenic | 45.0% |
| ! | AGCGATCACAAGCCAAGTTT+TGG | + | chr3_4:52639061-52639080 | Msa0506360:CDS | 45.0% |
| ! | GCGATCACAAGCCAAGTTTT+GGG | + | chr3_4:52639062-52639081 | Msa0506360:CDS | 45.0% |
| ! | CGATCACAAGCCAAGTTTTG+GGG | + | chr3_4:52639063-52639082 | Msa0506360:CDS | 45.0% |
| ! | AAGTGGCTAGCCATAATCTC+CGG | - | chr3_4:52639486-52639505 | None:intergenic | 45.0% |
| ! | AAGACTCTAGAAGGTGAGCT+TGG | + | chr3_4:52639980-52639999 | Msa0506360:CDS | 45.0% |
| ! | GGCCAAAAGGTGTATGGAAA+AGG | + | chr3_4:52640138-52640157 | Msa0506360:CDS | 45.0% |
| GTGTATGGAAAAGGAGAGTG+TGG | + | chr3_4:52640147-52640166 | Msa0506360:CDS | 45.0% | |
| ! | CCATAGATTTTGTGAGGGTG+AGG | - | chr3_4:52640184-52640203 | None:intergenic | 45.0% |
| CCTCACCCTCACAAAATCTA+TGG | + | chr3_4:52640181-52640200 | Msa0506360:CDS | 45.0% | |
| GATCGCTTGTAAGGGTCAGA+GGG | - | chr3_4:52639048-52639067 | None:intergenic | 50.0% | |
| TGATCGCTTGTAAGGGTCAG+AGG | - | chr3_4:52639049-52639068 | None:intergenic | 50.0% | |
| ! | GTTTGCCACTTGGGCTTGAA+TGG | - | chr3_4:52639736-52639755 | None:intergenic | 50.0% |
| AGTGCCCTAAGCTTGTAGCT+TGG | + | chr3_4:52640116-52640135 | Msa0506360:CDS | 50.0% | |
| GTGCCCTAAGCTTGTAGCTT+GGG | + | chr3_4:52640117-52640136 | Msa0506360:CDS | 50.0% | |
| TGGCCCAAGCTACAAGCTTA+GGG | - | chr3_4:52640123-52640142 | None:intergenic | 50.0% | |
| TTGGCCCAAGCTACAAGCTT+AGG | - | chr3_4:52640124-52640143 | None:intergenic | 50.0% | |
| AGCTTGTAGCTTGGGCCAAA+AGG | + | chr3_4:52640125-52640144 | Msa0506360:CDS | 50.0% | |
| ! | AGCTTGGGCCAAAAGGTGTA+TGG | + | chr3_4:52640132-52640151 | Msa0506360:CDS | 50.0% |
| AGAGATCGTTGGGGATTGCA+TGG | + | chr3_4:52640242-52640261 | Msa0506360:exon | 50.0% | |
| GAGATCGTTGGGGATTGCAT+GGG | + | chr3_4:52640243-52640262 | Msa0506360:exon | 50.0% | |
| CTGCACACGAAGTTCTTCTC+AGG | - | chr3_4:52640271-52640290 | None:intergenic | 50.0% | |
| GATCGCTTGTAAGGGTCAGA+GGG | - | chr3_4:52639048-52639067 | None:intergenic | 50.0% | |
| TGATCGCTTGTAAGGGTCAG+AGG | - | chr3_4:52639049-52639068 | None:intergenic | 50.0% | |
| ! | GTTTGCCACTTGGGCTTGAA+TGG | - | chr3_4:52639736-52639755 | None:intergenic | 50.0% |
| AGTGCCCTAAGCTTGTAGCT+TGG | + | chr3_4:52640116-52640135 | Msa0506360:CDS | 50.0% | |
| GTGCCCTAAGCTTGTAGCTT+GGG | + | chr3_4:52640117-52640136 | Msa0506360:CDS | 50.0% | |
| TGGCCCAAGCTACAAGCTTA+GGG | - | chr3_4:52640123-52640142 | None:intergenic | 50.0% | |
| TTGGCCCAAGCTACAAGCTT+AGG | - | chr3_4:52640124-52640143 | None:intergenic | 50.0% | |
| AGCTTGTAGCTTGGGCCAAA+AGG | + | chr3_4:52640125-52640144 | Msa0506360:CDS | 50.0% | |
| ! | AGCTTGGGCCAAAAGGTGTA+TGG | + | chr3_4:52640132-52640151 | Msa0506360:CDS | 50.0% |
| AGAGATCGTTGGGGATTGCA+TGG | + | chr3_4:52640242-52640261 | Msa0506360:exon | 50.0% | |
| GAGATCGTTGGGGATTGCAT+GGG | + | chr3_4:52640243-52640262 | Msa0506360:exon | 50.0% | |
| CTGCACACGAAGTTCTTCTC+AGG | - | chr3_4:52640271-52640290 | None:intergenic | 50.0% | |
| GGGTCAGAGGGCAAAAGAGA+AGG | - | chr3_4:52639036-52639055 | None:intergenic | 55.0% | |
| GTGAGGGTGAGGAAGTGACT+TGG | - | chr3_4:52640173-52640192 | None:intergenic | 55.0% | |
| GGGTCAGAGGGCAAAAGAGA+AGG | - | chr3_4:52639036-52639055 | None:intergenic | 55.0% | |
| GTGAGGGTGAGGAAGTGACT+TGG | - | chr3_4:52640173-52640192 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 52638690 | 52640462 | 52638690 | ID=Msa0506360;Name=Msa0506360 |
| chr3_4 | mRNA | 52638690 | 52640462 | 52638690 | ID=Msa0506360-mRNA-1;Parent=Msa0506360;Name=Msa0506360-mRNA-1;_AED=0.27;_eAED=0.27;_QI=85|1|1|1|1|1|2|219|224 |
| chr3_4 | exon | 52638690 | 52639104 | 52638690 | ID=Msa0506360-mRNA-1:exon:11479;Parent=Msa0506360-mRNA-1 |
| chr3_4 | exon | 52639899 | 52640462 | 52639899 | ID=Msa0506360-mRNA-1:exon:11480;Parent=Msa0506360-mRNA-1 |
| chr3_4 | five_prime_UTR | 52638690 | 52638774 | 52638690 | ID=Msa0506360-mRNA-1:five_prime_utr;Parent=Msa0506360-mRNA-1 |
| chr3_4 | CDS | 52638775 | 52639104 | 52638775 | ID=Msa0506360-mRNA-1:cds;Parent=Msa0506360-mRNA-1 |
| chr3_4 | CDS | 52639899 | 52640243 | 52639899 | ID=Msa0506360-mRNA-1:cds;Parent=Msa0506360-mRNA-1 |
| chr3_4 | three_prime_UTR | 52640244 | 52640462 | 52640244 | ID=Msa0506360-mRNA-1:three_prime_utr;Parent=Msa0506360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
