Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1053160 | RHN44783.1 | 95.918 | 49 | 2 | 0 | 1 | 49 | 1 | 49 | 7.18e-26 | 99.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1053160 | A0A396GWA0 | 95.918 | 49 | 2 | 0 | 1 | 49 | 1 | 49 | 3.43e-26 | 99.0 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027890 | Msa1053160 | 0.801511 | 8.698551e-49 | -8.615850e-47 |
| Msa0081650 | Msa1053160 | 0.826707 | 2.340816e-54 | -8.615850e-47 |
| Msa0085370 | Msa1053160 | 0.826123 | 3.223543e-54 | -8.615850e-47 |
| Msa0097590 | Msa1053160 | 0.806654 | 7.407433e-50 | -8.615850e-47 |
| Msa0097610 | Msa1053160 | 0.807517 | 4.862511e-50 | -8.615850e-47 |
| Msa0614510 | Msa1053160 | 0.809915 | 1.494014e-50 | -8.615850e-47 |
| Msa0620620 | Msa1053160 | 0.809539 | 1.800121e-50 | -8.615850e-47 |
| Msa0826760 | Msa1053160 | 0.811567 | 6.563572e-51 | -8.615850e-47 |
| Msa0832090 | Msa1053160 | 0.801918 | 7.175884e-49 | -8.615850e-47 |
| Msa0432160 | Msa1053160 | 0.800619 | 1.324003e-48 | -8.615850e-47 |
| Msa0453690 | Msa1053160 | 0.811563 | 6.576161e-51 | -8.615850e-47 |
| Msa0476680 | Msa1053160 | 0.801488 | 8.794417e-49 | -8.615850e-47 |
| Msa0479200 | Msa1053160 | 0.803909 | 2.783352e-49 | -8.615850e-47 |
| Msa1011510 | Msa1053160 | 0.903567 | 3.035151e-79 | -8.615850e-47 |
| Msa1053160 | Msa1095650 | 0.810120 | 1.349700e-50 | -8.615850e-47 |
| Msa1053160 | Msa1154490 | 0.804319 | 2.287342e-49 | -8.615850e-47 |
| Msa1053160 | Msa1190970 | 0.806386 | 8.434541e-50 | -8.615850e-47 |
| Msa1053160 | Msa1201810 | 0.800124 | 1.669485e-48 | -8.615850e-47 |
| Msa1053160 | Msa1244640 | 0.800873 | 1.175055e-48 | -8.615850e-47 |
| Msa0483740 | Msa1053160 | 0.805536 | 1.273193e-49 | -8.615850e-47 |
| Msa0510290 | Msa1053160 | 0.805238 | 1.470310e-49 | -8.615850e-47 |
| Msa0576680 | Msa1053160 | 0.808402 | 3.152814e-50 | -8.615850e-47 |
| Msa0909010 | Msa1053160 | 0.804953 | 1.686400e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1053160 | MtrunA17_Chr7g0223171 | 95.918 | 49 | 2 | 0 | 1 | 49 | 1 | 49 | 6.60e-30 | 99.0 |
| Msa1053160 | MtrunA17_Chr8g0376211 | 85.714 | 49 | 7 | 0 | 1 | 49 | 1 | 49 | 1.55e-27 | 92.8 |
| Msa1053160 | MtrunA17_Chr8g0376251 | 85.714 | 49 | 7 | 0 | 1 | 49 | 1 | 49 | 1.55e-27 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1053160 | AT1G06515.1 | 66.038 | 53 | 14 | 1 | 1 | 49 | 1 | 53 | 1.30e-18 | 70.9 |
| Msa1053160 | AT1G06515.2 | 66.038 | 53 | 14 | 1 | 1 | 49 | 1 | 53 | 1.30e-18 | 70.9 |
| Msa1053160 | AT2G30942.1 | 62.264 | 53 | 16 | 1 | 1 | 49 | 1 | 53 | 3.48e-17 | 67.4 |
Find 15 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAACTATTACAGATATTT+TGG | 0.137656 | 7_2:+22530316 | Msa1053160:intron |
| CACCTTTACAATGTTACTTT+TGG | 0.153503 | 7_2:+22529987 | Msa1053160:CDS |
| ACAGATCATTCAACATTTAT+TGG | 0.178417 | 7_2:+22527392 | Msa1053160:five_prime_UTR |
| TGAACTACCTCTTGAAGAAT+TGG | 0.287014 | 7_2:-22530376 | None:intergenic |
| GGCTTTATATGCTGGATTGG+TGG | 0.387109 | 7_2:+22530009 | Msa1053160:CDS |
| CAGTTGTGGAAGTCATGAAT+TGG | 0.399034 | 7_2:+22529949 | Msa1053160:intron |
| TTGGGCTTTATATGCTGGAT+TGG | 0.428670 | 7_2:+22530006 | Msa1053160:CDS |
| GCTTTATATGCTGGATTGGT+GGG | 0.445941 | 7_2:+22530010 | Msa1053160:CDS |
| CATGAATTGGGTTCAGCAAA+AGG | 0.457099 | 7_2:+22529962 | Msa1053160:exon |
| AAATCTCATGCGATCGCACC+AGG | 0.500256 | 7_2:+22527422 | Msa1053160:five_prime_UTR |
| GAACTACCTCTTGAAGAATT+GGG | 0.501709 | 7_2:-22530375 | None:intergenic |
| GCCCAAAAGTAACATTGTAA+AGG | 0.523226 | 7_2:-22529989 | None:intergenic |
| AGTTGTGGAAGTCATGAATT+GGG | 0.531926 | 7_2:+22529950 | Msa1053160:intron |
| CAAAAGTAACATTGTAAAGG+TGG | 0.589878 | 7_2:-22529986 | None:intergenic |
| ACATTACCCAATTCTTCAAG+AGG | 0.594314 | 7_2:+22530369 | Msa1053160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTCTTTTATGTTATT+TGG | + | chr7_2:22527746-22527765 | Msa1053160:intron | 10.0% |
| !! | GAAAGAAAAATTAATTTAAG+AGG | - | chr7_2:22527480-22527499 | None:intergenic | 15.0% |
| !!! | ATAGTTTTTGTAATTTAAGT+TGG | + | chr7_2:22528514-22528533 | Msa1053160:intron | 15.0% |
| !!! | TAGTTTTTGTAATTTAAGTT+GGG | + | chr7_2:22528515-22528534 | Msa1053160:intron | 15.0% |
| !! | TAAAATACAAATACTTAATG+AGG | - | chr7_2:22528811-22528830 | None:intergenic | 15.0% |
| !!! | TTGTGTAATCTTTAATTTTT+AGG | + | chr7_2:22529699-22529718 | Msa1053160:intron | 15.0% |
| !!! | ACTGCAAAAAATATATTTTT+GGG | - | chr7_2:22529933-22529952 | None:intergenic | 15.0% |
| !!! | AACTGCAAAAAATATATTTT+TGG | - | chr7_2:22529934-22529953 | None:intergenic | 15.0% |
| !!! | ATTATTTGTTGTTTTGTTGA+TGG | - | chr7_2:22527243-22527262 | None:intergenic | 20.0% |
| !!! | TATAAAGTTTTGAGTAATGT+TGG | + | chr7_2:22527620-22527639 | Msa1053160:intron | 20.0% |
| !! | GAAAACTTTGATTCTTAAAA+AGG | - | chr7_2:22527838-22527857 | None:intergenic | 20.0% |
| !! | ACAAATTACAGAATGAAAAA+TGG | + | chr7_2:22528015-22528034 | Msa1053160:intron | 20.0% |
| !!! | TTTAAAACTATTGTTTTTGC+AGG | - | chr7_2:22528159-22528178 | None:intergenic | 20.0% |
| !! | GAAAATATCACATCTAATAA+GGG | - | chr7_2:22528404-22528423 | None:intergenic | 20.0% |
| !! | AGAAAATATCACATCTAATA+AGG | - | chr7_2:22528405-22528424 | None:intergenic | 20.0% |
| !!! | ATTAGATGTGATATTTTCTT+AGG | + | chr7_2:22528406-22528425 | Msa1053160:intron | 20.0% |
| !! | GAGTAATGAACATAATTAAA+AGG | - | chr7_2:22528670-22528689 | None:intergenic | 20.0% |
| !!! | TTACTCTTTGATTTTGTAAT+TGG | + | chr7_2:22528684-22528703 | Msa1053160:intron | 20.0% |
| !!! | TTTTGCATTTCTATATATAC+TGG | + | chr7_2:22529869-22529888 | Msa1053160:intron | 20.0% |
| !!! | CTGCAAAAAATATATTTTTG+GGG | - | chr7_2:22529932-22529951 | None:intergenic | 20.0% |
| !!! | AAATATATTTTTTGCAGTTG+TGG | + | chr7_2:22529935-22529954 | Msa1053160:intron | 20.0% |
| !!! | TGGTTAAAGAAATAGTTTTA+AGG | - | chr7_2:22530118-22530137 | None:intergenic | 20.0% |
| !! | ACCATGATAGTTATTTATAT+AGG | + | chr7_2:22530134-22530153 | Msa1053160:intron | 20.0% |
| !! | CCATGATAGTTATTTATATA+GGG | + | chr7_2:22530135-22530154 | Msa1053160:intron | 20.0% |
| !! | CAAAATATCTGTAATAGTTA+AGG | - | chr7_2:22530318-22530337 | None:intergenic | 20.0% |
| !!! | CTTAACTATTACAGATATTT+TGG | + | chr7_2:22530316-22530335 | Msa1053160:intron | 20.0% |
| !!! | AATCTTTCTTTTTCACTTCA+CGG | + | chr7_2:22527310-22527329 | Msa1053160:five_prime_UTR | 25.0% |
| ! | ACAGATCATTCAACATTTAT+TGG | + | chr7_2:22527392-22527411 | Msa1053160:five_prime_UTR | 25.0% |
| !!! | AATGTTGGTTTGATACAAAA+TGG | + | chr7_2:22527635-22527654 | Msa1053160:intron | 25.0% |
| !!! | GTTAAACATTTTAACCTTCA+AGG | - | chr7_2:22527816-22527835 | None:intergenic | 25.0% |
| ! | TATAAGTGTGTATGAAATGA+AGG | + | chr7_2:22528112-22528131 | Msa1053160:intron | 25.0% |
| !!! | TTGTAATTGTTTCTACTAAC+TGG | - | chr7_2:22528481-22528500 | None:intergenic | 25.0% |
| ! | ATTAAGACTTCTTTCTGAAT+TGG | + | chr7_2:22528624-22528643 | Msa1053160:intron | 25.0% |
| ! | AATATGACATGTCTTTAAGT+CGG | + | chr7_2:22528912-22528931 | Msa1053160:intron | 25.0% |
| !! | GAATGTATTGTTTTCAGATT+CGG | - | chr7_2:22528983-22529002 | None:intergenic | 25.0% |
| ! | TTTAACATAACTAGCGTATT+TGG | + | chr7_2:22529067-22529086 | Msa1053160:intron | 25.0% |
| ! | CAGTTTCAACAATTCTTTAT+TGG | - | chr7_2:22529141-22529160 | None:intergenic | 25.0% |
| ! | TGCTATTGAGAATTCAAATT+AGG | + | chr7_2:22529359-22529378 | Msa1053160:intron | 25.0% |
| !!! | ACCTTTACAATGTTACTTTT+GGG | + | chr7_2:22529988-22530007 | Msa1053160:CDS | 25.0% |
| ! | TGTAGAAGAAAGTGAAATAA+AGG | - | chr7_2:22530055-22530074 | None:intergenic | 25.0% |
| ! | CCCTATATAAATAACTATCA+TGG | - | chr7_2:22530138-22530157 | None:intergenic | 25.0% |
| !! | ATCTTTCTTTTTCACTTCAC+GGG | + | chr7_2:22527311-22527330 | Msa1053160:five_prime_UTR | 30.0% |
| !! | ATCAACTGATTTTCTAACGA+AGG | + | chr7_2:22527584-22527603 | Msa1053160:intron | 30.0% |
| !! | TCAACTGATTTTCTAACGAA+GGG | + | chr7_2:22527585-22527604 | Msa1053160:intron | 30.0% |
| AAAATTAAAGTGATCGCAGT+GGG | - | chr7_2:22527719-22527738 | None:intergenic | 30.0% | |
| AAAAATTAAAGTGATCGCAG+TGG | - | chr7_2:22527720-22527739 | None:intergenic | 30.0% | |
| TCAAAATGTTCTAACCTTGA+AGG | + | chr7_2:22527799-22527818 | Msa1053160:intron | 30.0% | |
| !! | AAACAGAAGTGTTTGTATGT+AGG | + | chr7_2:22528052-22528071 | Msa1053160:intron | 30.0% |
| ! | GAAATGAAGGCATATATGTT+TGG | + | chr7_2:22528125-22528144 | Msa1053160:intron | 30.0% |
| TGTCTTAATAAGTGCATGTT+TGG | - | chr7_2:22528288-22528307 | None:intergenic | 30.0% | |
| AGAAAATGATACGTTTCTGT+CGG | + | chr7_2:22528376-22528395 | Msa1053160:intron | 30.0% | |
| GAAACAATTACAAGCATCAA+AGG | + | chr7_2:22528488-22528507 | Msa1053160:intron | 30.0% | |
| TGAATTGGTATTAACTTAGC+TGG | + | chr7_2:22528639-22528658 | Msa1053160:intron | 30.0% | |
| AAAACATTATTCCACTCGTT+AGG | - | chr7_2:22528780-22528799 | None:intergenic | 30.0% | |
| TAATAGCGATTCATATACTC+CGG | + | chr7_2:22528829-22528848 | Msa1053160:intron | 30.0% | |
| ATATGACATGTCTTTAAGTC+GGG | + | chr7_2:22528913-22528932 | Msa1053160:intron | 30.0% | |
| AACAATACATTCAAGAGCTT+AGG | + | chr7_2:22528991-22529010 | Msa1053160:intron | 30.0% | |
| GATCCATAATTTGATTGAAG+CGG | + | chr7_2:22529115-22529134 | Msa1053160:intron | 30.0% | |
| ! | ACATCAAATGTGCTTAGTTT+TGG | + | chr7_2:22529288-22529307 | Msa1053160:intron | 30.0% |
| !!! | ATGGTTTTTTTCCATTAGTC+AGG | - | chr7_2:22529533-22529552 | None:intergenic | 30.0% |
| TGACGAATGAGGAATAATTA+TGG | - | chr7_2:22529552-22529571 | None:intergenic | 30.0% | |
| TTGTATCCATCATTAATGCA+TGG | + | chr7_2:22529751-22529770 | Msa1053160:intron | 30.0% | |
| CAAAAGTAACATTGTAAAGG+TGG | - | chr7_2:22529989-22530008 | None:intergenic | 30.0% | |
| !!! | CACCTTTACAATGTTACTTT+TGG | + | chr7_2:22529987-22530006 | Msa1053160:CDS | 30.0% |
| !!! | TAGTTTTAAGGTAACTACGA+AGG | - | chr7_2:22530106-22530125 | None:intergenic | 30.0% |
| !! | TCTTTCTTTTTCACTTCACG+GGG | + | chr7_2:22527312-22527331 | Msa1053160:five_prime_UTR | 35.0% |
| CCATATGATTGTTTCAGTCA+GGG | - | chr7_2:22527919-22527938 | None:intergenic | 35.0% | |
| ATCCTCCAATATCTAGGAAA+GGG | - | chr7_2:22527986-22528005 | None:intergenic | 35.0% | |
| AATCCTCCAATATCTAGGAA+AGG | - | chr7_2:22527987-22528006 | None:intergenic | 35.0% | |
| GTCTTAATCCTCCAATATCT+AGG | - | chr7_2:22527992-22528011 | None:intergenic | 35.0% | |
| AACCCAACGTAAACAATGAT+TGG | + | chr7_2:22528177-22528196 | Msa1053160:intron | 35.0% | |
| CTCCAATCATTGTTTACGTT+GGG | - | chr7_2:22528182-22528201 | None:intergenic | 35.0% | |
| ACTGAACGAAAGGTCAAAAT+AGG | - | chr7_2:22528261-22528280 | None:intergenic | 35.0% | |
| TAGCTGGTTACATGGATAAT+GGG | - | chr7_2:22528337-22528356 | None:intergenic | 35.0% | |
| TTCTTTACTAGCTGGTTACA+TGG | - | chr7_2:22528345-22528364 | None:intergenic | 35.0% | |
| TTCAACGTTTCTTTACTAGC+TGG | - | chr7_2:22528353-22528372 | None:intergenic | 35.0% | |
| TATTATCTCCAAAGTTGTCC+TGG | + | chr7_2:22528571-22528590 | Msa1053160:intron | 35.0% | |
| TAGGCATAAGCTGTAAAGTA+TGG | - | chr7_2:22528761-22528780 | None:intergenic | 35.0% | |
| ACATTCAAGAGCTTAGGATT+TGG | + | chr7_2:22528997-22529016 | Msa1053160:intron | 35.0% | |
| !! | GAGCAATGATTTGTTTGTGT+TGG | + | chr7_2:22529160-22529179 | Msa1053160:intron | 35.0% |
| CAATGCCACATCAAATAAGA+GGG | - | chr7_2:22529186-22529205 | None:intergenic | 35.0% | |
| ACAATGCCACATCAAATAAG+AGG | - | chr7_2:22529187-22529206 | None:intergenic | 35.0% | |
| AATTATTCCTCATTCGTCAG+TGG | + | chr7_2:22529553-22529572 | Msa1053160:intron | 35.0% | |
| ATTATTCCTCATTCGTCAGT+GGG | + | chr7_2:22529554-22529573 | Msa1053160:intron | 35.0% | |
| AGTTGTGGAAGTCATGAATT+GGG | + | chr7_2:22529950-22529969 | Msa1053160:intron | 35.0% | |
| GCCCAAAAGTAACATTGTAA+AGG | - | chr7_2:22529992-22530011 | None:intergenic | 35.0% | |
| !! | TACTTTTGGGCTTTATATGC+TGG | + | chr7_2:22530001-22530020 | Msa1053160:CDS | 35.0% |
| ACGAAGGTAAAGACATCTTA+AGG | - | chr7_2:22530090-22530109 | None:intergenic | 35.0% | |
| ! | TGCTAATGTGTTTTGTAGTG+CGG | + | chr7_2:22530345-22530364 | Msa1053160:CDS | 35.0% |
| ACATTACCCAATTCTTCAAG+AGG | + | chr7_2:22530369-22530388 | Msa1053160:CDS | 35.0% | |
| GAACTACCTCTTGAAGAATT+GGG | - | chr7_2:22530378-22530397 | None:intergenic | 35.0% | |
| TGAACTACCTCTTGAAGAAT+TGG | - | chr7_2:22530379-22530398 | None:intergenic | 35.0% | |
| GATACAAAATGGTCGCATAG+CGG | + | chr7_2:22527646-22527665 | Msa1053160:intron | 40.0% | |
| CCCTGACTGAAACAATCATA+TGG | + | chr7_2:22527916-22527935 | Msa1053160:intron | 40.0% | |
| GCCATATGATTGTTTCAGTC+AGG | - | chr7_2:22527920-22527939 | None:intergenic | 40.0% | |
| TCCTCCAATATCTAGGAAAG+GGG | - | chr7_2:22527985-22528004 | None:intergenic | 40.0% | |
| CCTCCAATCATTGTTTACGT+TGG | - | chr7_2:22528183-22528202 | None:intergenic | 40.0% | |
| CCAACGTAAACAATGATTGG+AGG | + | chr7_2:22528180-22528199 | Msa1053160:intron | 40.0% | |
| !! | ACATGGATAATGGGAGAATG+AGG | - | chr7_2:22528328-22528347 | None:intergenic | 40.0% |
| CTAGCTGGTTACATGGATAA+TGG | - | chr7_2:22528338-22528357 | None:intergenic | 40.0% | |
| TACACAATCCAGGACAACTT+TGG | - | chr7_2:22528582-22528601 | None:intergenic | 40.0% | |
| AGCGATCTTATACACAATCC+AGG | - | chr7_2:22528592-22528611 | None:intergenic | 40.0% | |
| TTTCAGATTCGGATGCATGA+TGG | - | chr7_2:22528972-22528991 | None:intergenic | 40.0% | |
| TGGTTTATGTCAAATCAGCG+AGG | + | chr7_2:22529087-22529106 | Msa1053160:intron | 40.0% | |
| TGGCCGCTTCAATCAAATTA+TGG | - | chr7_2:22529121-22529140 | None:intergenic | 40.0% | |
| AGTGTGAGGAAAACAATGTC+TGG | + | chr7_2:22529322-22529341 | Msa1053160:intron | 40.0% | |
| ! | TGATTTGCGATTCACTTAGC+TGG | + | chr7_2:22529391-22529410 | Msa1053160:intron | 40.0% |
| CAGGCATAAGCTGTAAAGTA+TGG | - | chr7_2:22529514-22529533 | None:intergenic | 40.0% | |
| TACAGCTTATGCCTGACTAA+TGG | + | chr7_2:22529519-22529538 | Msa1053160:intron | 40.0% | |
| AGTCTACCACAGATGGTTAT+TGG | + | chr7_2:22529627-22529646 | Msa1053160:intron | 40.0% | |
| CTCAAGCCATGCATTAATGA+TGG | - | chr7_2:22529760-22529779 | None:intergenic | 40.0% | |
| CAGTTGTGGAAGTCATGAAT+TGG | + | chr7_2:22529949-22529968 | Msa1053160:intron | 40.0% | |
| CATGAATTGGGTTCAGCAAA+AGG | + | chr7_2:22529962-22529981 | Msa1053160:exon | 40.0% | |
| ! | TTGGGCTTTATATGCTGGAT+TGG | + | chr7_2:22530006-22530025 | Msa1053160:CDS | 40.0% |
| !! | GCTTTATATGCTGGATTGGT+GGG | + | chr7_2:22530010-22530029 | Msa1053160:CDS | 40.0% |
| GCGTTAGACTCCGAATCTAA+AGG | + | chr7_2:22527679-22527698 | Msa1053160:intron | 45.0% | |
| ACTCCGAATCTAAAGGTCGT+GGG | + | chr7_2:22527686-22527705 | Msa1053160:intron | 45.0% | |
| GAACCCACGACCTTTAGATT+CGG | - | chr7_2:22527692-22527711 | None:intergenic | 45.0% | |
| ! | GGAAAGGGGCTCTAGTAATT+TGG | - | chr7_2:22527971-22527990 | None:intergenic | 45.0% |
| AGAGCCCCTTTCCTAGATAT+TGG | + | chr7_2:22527978-22527997 | Msa1053160:intron | 45.0% | |
| GTTTGGATGCACTGAACGAA+AGG | - | chr7_2:22528271-22528290 | None:intergenic | 45.0% | |
| ATTTAAGCGAGCTGCAGCTT+AGG | - | chr7_2:22528726-22528745 | None:intergenic | 45.0% | |
| TACAGCTTATGCCTAACGAG+TGG | + | chr7_2:22528766-22528785 | Msa1053160:intron | 45.0% | |
| AGTCTGCCACAGATGGTTAT+TGG | + | chr7_2:22528868-22528887 | Msa1053160:intron | 45.0% | |
| GACACACCAATAACCATCTG+TGG | - | chr7_2:22528877-22528896 | None:intergenic | 45.0% | |
| ! | GTTGGCCCTCTTATTTGATG+TGG | + | chr7_2:22529178-22529197 | Msa1053160:intron | 45.0% |
| TGATGTGGCATTGTCTTGAC+TGG | + | chr7_2:22529193-22529212 | Msa1053160:intron | 45.0% | |
| !! | TGGAGTTCAAGTTGAGTGTG+AGG | + | chr7_2:22529308-22529327 | Msa1053160:intron | 45.0% |
| CAAATACCCACTGACGAATG+AGG | - | chr7_2:22529563-22529582 | None:intergenic | 45.0% | |
| GGCAATAGTCTCGGAGTATA+TGG | - | chr7_2:22529601-22529620 | None:intergenic | 45.0% | |
| ACTTGCTCAGGCAATAGTCT+CGG | - | chr7_2:22529610-22529629 | None:intergenic | 45.0% | |
| GACACACCAATAACCATCTG+TGG | - | chr7_2:22528877-22528896 | None:intergenic | 45.0% | |
| ! | GGCTTTATATGCTGGATTGG+TGG | + | chr7_2:22530009-22530028 | Msa1053160:CDS | 45.0% |
| AAATCTCATGCGATCGCACC+AGG | + | chr7_2:22527422-22527441 | Msa1053160:five_prime_UTR | 50.0% | |
| ! | AAAATGGTCGCATAGCGGAG+TGG | + | chr7_2:22527651-22527670 | Msa1053160:intron | 50.0% |
| GACTCCGAATCTAAAGGTCG+TGG | + | chr7_2:22527685-22527704 | Msa1053160:intron | 50.0% | |
| GCCCCTTTCCTAGATATTGG+AGG | + | chr7_2:22527981-22528000 | Msa1053160:intron | 50.0% | |
| ! | ACTTGCTAAGGCAACAGAGC+CGG | - | chr7_2:22528851-22528870 | None:intergenic | 50.0% |
| !! | CATCTGTGGCAGACTTGCTA+AGG | - | chr7_2:22528863-22528882 | None:intergenic | 50.0% |
| CTTAGCAAGTCTGCCACAGA+TGG | + | chr7_2:22528861-22528880 | Msa1053160:intron | 50.0% | |
| ! | CATCTGTGGTAGACTTGCTC+AGG | - | chr7_2:22529622-22529641 | None:intergenic | 50.0% |
| CTGAGCAAGTCTACCACAGA+TGG | + | chr7_2:22529620-22529639 | Msa1053160:intron | 50.0% | |
| CGCGTGCGTGCGTGCGTACC+TGG | - | chr7_2:22527443-22527462 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 22527238 | 22530414 | 22527238 | ID=Msa1053160;Name=Msa1053160 |
| chr7_2 | mRNA | 22527238 | 22530414 | 22527238 | ID=Msa1053160-mRNA-1;Parent=Msa1053160;Name=Msa1053160-mRNA-1;_AED=0.34;_eAED=0.34;_QI=217|1|0.66|1|0|0|3|20|49 |
| chr7_2 | exon | 22527238 | 22527443 | 22527238 | ID=Msa1053160-mRNA-1:exon:5085;Parent=Msa1053160-mRNA-1 |
| chr7_2 | exon | 22529952 | 22530047 | 22529952 | ID=Msa1053160-mRNA-1:exon:5086;Parent=Msa1053160-mRNA-1 |
| chr7_2 | exon | 22530330 | 22530414 | 22530330 | ID=Msa1053160-mRNA-1:exon:5087;Parent=Msa1053160-mRNA-1 |
| chr7_2 | five_prime_UTR | 22527238 | 22527443 | 22527238 | ID=Msa1053160-mRNA-1:five_prime_utr;Parent=Msa1053160-mRNA-1 |
| chr7_2 | five_prime_UTR | 22529952 | 22529962 | 22529952 | ID=Msa1053160-mRNA-1:five_prime_utr;Parent=Msa1053160-mRNA-1 |
| chr7_2 | CDS | 22529963 | 22530047 | 22529963 | ID=Msa1053160-mRNA-1:cds;Parent=Msa1053160-mRNA-1 |
| chr7_2 | CDS | 22530330 | 22530394 | 22530330 | ID=Msa1053160-mRNA-1:cds;Parent=Msa1053160-mRNA-1 |
| chr7_2 | three_prime_UTR | 22530395 | 22530414 | 22530395 | ID=Msa1053160-mRNA-1:three_prime_utr;Parent=Msa1053160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
