AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0097610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0097610 MtrunA17_Chr1g0152291 97.465 434 11 0 1 434 1 434 0.0 855
Msa0097610 MtrunA17_Chr5g0400971 63.882 407 141 4 28 434 51 451 0.0 529
Msa0097610 MtrunA17_Chr8g0384041 29.412 408 236 13 45 417 10 400 3.10e-35 135
Msa0097610 MtrunA17_Chr4g0044631 26.382 398 259 7 36 413 5 388 6.81e-32 125
Msa0097610 MtrunA17_Chr5g0434171 27.792 403 237 9 45 413 35 417 6.01e-30 120
Msa0097610 MtrunA17_Chr1g0199321 27.273 363 231 9 45 385 247 598 1.85e-29 121
Msa0097610 MtrunA17_Chr7g0267501 28.095 420 260 11 44 431 7 416 6.86e-28 114
Msa0097610 MtrunA17_Chr4g0031431 26.166 386 257 9 45 415 255 627 7.46e-28 116
Msa0097610 MtrunA17_Chr4g0044411 27.616 344 223 8 45 372 273 606 2.14e-27 115
Msa0097610 MtrunA17_Chr3g0110121 26.161 409 259 10 31 413 26 417 2.38e-27 113
Msa0097610 MtrunA17_Chr3g0129811 27.295 403 249 12 45 417 83 471 6.66e-27 112
Msa0097610 MtrunA17_Chr6g0479261 26.142 394 263 9 45 413 25 415 2.43e-26 110
Msa0097610 MtrunA17_Chr7g0248251 26.053 380 247 9 45 408 274 635 5.74e-26 110
Msa0097610 MtrunA17_Chr5g0420471 26.142 394 263 9 45 413 25 415 1.28e-24 105
Msa0097610 MtrunA17_Chr7g0237931 28.060 335 218 10 45 367 237 560 4.49e-23 102
Msa0097610 MtrunA17_Chr2g0284461 27.778 306 194 6 28 312 274 573 6.47e-22 98.6
Msa0097610 MtrunA17_Chr2g0322021 27.094 406 278 11 39 431 1 401 2.94e-20 92.4
Msa0097610 MtrunA17_Chr1g0177271 26.995 426 259 15 41 421 4 422 1.32e-19 90.5
Msa0097610 MtrunA17_Chr7g0275081 31.064 235 141 6 46 264 79 308 3.42e-19 89.7
Msa0097610 MtrunA17_Chr1g0177261 26.887 424 260 14 42 421 5 422 4.21e-19 89.0
Msa0097610 MtrunA17_Chr7g0234671 28.755 233 148 5 46 264 79 307 9.24e-19 88.2
Msa0097610 MtrunA17_Chr1g0177301 27.470 415 249 18 39 421 1 395 1.38e-18 87.4
Msa0097610 MtrunA17_Chr1g0177281 26.636 428 258 17 41 421 4 422 1.90e-18 87.0
Msa0097610 MtrunA17_Chr5g0437411 24.242 363 228 10 44 372 292 641 1.98e-18 87.8
Msa0097610 MtrunA17_Chr4g0059201 28.526 312 188 10 46 334 320 619 5.16e-18 86.7
Msa0097610 MtrunA17_Chr4g0013091 29.956 227 115 8 45 237 313 529 8.11e-17 83.2
Msa0097610 MtrunA17_Chr5g0413681 27.961 304 191 9 49 333 284 578 2.57e-16 81.3
Msa0097610 MtrunA17_Chr2g0280671 26.149 348 230 11 51 387 21 352 9.85e-16 78.6
Msa0097610 MtrunA17_Chr3g0117851 28.070 285 178 7 22 285 254 532 4.20e-15 77.4
Msa0097610 MtrunA17_Chr3g0122721 50.000 66 33 0 46 111 281 346 5.48e-15 77.4
Msa0097610 MtrunA17_Chr4g0048811 46.377 69 36 1 44 111 4 72 6.39e-14 72.4
Msa0097610 MtrunA17_Chr1g0198984 47.692 65 34 0 58 122 1 65 7.15e-14 67.8
Msa0097610 MtrunA17_Chr1g0183781 46.970 66 35 0 46 111 242 307 2.94e-13 72.0
Msa0097610 MtrunA17_Chr1g0189811 24.542 273 183 7 45 303 63 326 4.08e-13 70.9
Msa0097610 MtrunA17_Chr3g0106931 47.761 67 35 0 45 111 233 299 1.05e-12 70.1
Msa0097610 MtrunA17_Chr7g0261371 43.243 74 42 0 38 111 234 307 2.04e-12 69.3
Msa0097610 MtrunA17_Chr4g0025501 47.887 71 34 2 44 111 5 75 2.99e-12 68.2
Msa0097610 MtrunA17_Chr3g0144071 28.033 239 133 12 42 263 27 243 4.61e-12 68.2
Msa0097610 MtrunA17_Chr8g0377151 45.455 66 36 0 46 111 283 348 6.11e-12 67.8
Msa0097610 MtrunA17_Chr8g0373031 45.455 66 36 0 46 111 276 341 7.99e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0097610 AT3G49810.1 62.408 407 147 4 28 434 48 448 0.0 520
Msa0097610 AT5G65920.1 59.330 418 162 5 19 434 33 444 1.09e-174 496
Msa0097610 AT5G65920.2 59.330 418 162 5 19 434 33 444 1.09e-174 496
Msa0097610 AT3G19380.1 32.718 379 238 10 36 399 5 381 1.56e-41 152
Msa0097610 AT1G49780.1 30.886 395 254 8 36 413 5 397 1.09e-36 139
Msa0097610 AT3G18710.1 27.873 409 257 13 37 419 4 400 2.18e-33 130
Msa0097610 AT5G64660.1 27.700 426 222 15 45 417 10 402 4.78e-32 126
Msa0097610 AT3G54850.1 28.235 340 217 8 45 368 248 576 1.03e-30 125
Msa0097610 AT2G35930.1 26.506 415 267 11 39 429 6 406 3.50e-28 115
Msa0097610 AT1G23030.1 26.741 359 234 11 26 366 218 565 5.18e-28 117
Msa0097610 AT3G46510.1 25.323 387 259 9 45 415 256 628 8.80e-27 113
Msa0097610 AT1G66160.1 26.494 385 253 11 45 413 33 403 1.51e-26 111
Msa0097610 AT1G71020.2 27.273 341 220 9 45 367 95 425 2.35e-26 111
Msa0097610 AT1G71020.1 27.273 341 220 9 45 367 243 573 4.73e-26 111
Msa0097610 AT5G37490.1 26.531 392 253 9 45 413 31 410 5.68e-26 109
Msa0097610 AT5G42340.1 30.081 246 161 6 45 282 290 532 4.77e-25 108
Msa0097610 AT2G28830.1 27.273 308 198 4 46 335 185 484 6.53e-25 107
Msa0097610 AT5G09800.1 26.434 401 253 16 42 417 8 391 3.22e-23 101
Msa0097610 AT3G52450.1 25.952 420 260 12 39 413 1 414 3.28e-22 98.6
Msa0097610 AT1G29340.1 27.055 292 188 6 40 312 300 585 9.11e-21 95.5
Msa0097610 AT1G66160.2 24.156 385 246 12 45 413 33 387 5.01e-17 83.2
Msa0097610 AT5G01830.1 30.244 205 125 4 44 234 273 473 6.63e-17 83.6
Msa0097610 AT3G07360.1 28.146 302 187 10 46 331 75 362 9.96e-17 82.4
Msa0097610 AT4G21350.1 25.076 331 229 7 44 367 4 322 1.39e-16 81.3
Msa0097610 AT1G67530.2 54.545 66 30 0 46 111 273 338 1.30e-15 79.7
Msa0097610 AT1G67530.1 54.545 66 30 0 46 111 273 338 1.30e-15 79.7
Msa0097610 AT1G67530.4 54.545 66 30 0 46 111 273 338 1.30e-15 79.7
Msa0097610 AT1G67530.3 54.545 66 30 0 46 111 273 338 1.40e-15 79.3
Msa0097610 AT1G60190.1 28.214 280 173 10 51 310 284 555 2.23e-14 75.9
Msa0097610 AT1G24330.1 51.515 66 32 0 46 111 276 341 3.31e-14 75.5
Msa0097610 AT1G24330.2 51.515 66 32 0 46 111 276 341 3.31e-14 75.5
Msa0097610 AT3G11840.1 39.167 120 65 5 44 157 9 126 7.46e-14 73.6
Msa0097610 AT1G27910.1 51.515 66 32 0 46 111 280 345 8.90e-14 73.9
Msa0097610 AT1G10560.1 25.231 325 199 11 49 339 292 606 3.41e-13 72.0
Msa0097610 AT2G23140.1 47.619 63 33 0 49 111 237 299 1.13e-12 70.5
Msa0097610 AT2G23140.2 47.619 63 33 0 49 111 234 296 1.18e-12 70.5
Msa0097610 AT2G23140.4 47.619 63 33 0 49 111 234 296 1.18e-12 70.5
Msa0097610 AT2G23140.3 47.619 63 33 0 49 111 45 107 1.39e-12 70.1
Msa0097610 AT2G23140.5 47.619 63 33 0 49 111 45 107 1.39e-12 70.1
Msa0097610 AT3G54790.2 42.647 68 39 0 45 112 202 269 2.17e-12 69.7
Msa0097610 AT3G54790.3 42.647 68 39 0 45 112 238 305 2.43e-12 69.3
Msa0097610 AT3G54790.1 42.647 68 39 0 45 112 238 305 2.43e-12 69.3
Msa0097610 AT3G02840.1 23.954 263 184 7 163 412 92 351 5.48e-12 67.4
Msa0097610 AT5G65500.1 41.096 73 43 0 43 115 713 785 3.06e-11 65.9
Msa0097610 AT5G65500.2 41.096 73 43 0 43 115 721 793 3.10e-11 65.9

Find 68 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACACTCGTTATTCAAATT+TGG 0.155411 1_3:+3445047 None:intergenic
GACCAAGTGAAAACCATTTA+AGG 0.159560 1_3:+3445753 None:intergenic
TATCGGTATCATTGTGAATT+TGG 0.172886 1_3:-3445405 Msa0097610:CDS
CATCCAAATGGGATATTAAT+TGG 0.260923 1_3:-3445164 Msa0097610:CDS
TGTTTCAAGTTTGAGTCTTT+TGG 0.266950 1_3:-3445219 Msa0097610:CDS
ATAGATCCAACATCCTTAAA+TGG 0.267794 1_3:-3445766 Msa0097610:CDS
GGTTTGGTTTGTTCTTTGTT+AGG 0.271110 1_3:-3445461 Msa0097610:CDS
TCAAAGCTCTTAAGGATCTT+AGG 0.281536 1_3:-3445541 Msa0097610:CDS
GCCTTTGAAGCACATTCTTC+AGG 0.321820 1_3:+3444855 None:intergenic
AACACTTGAAGAAGGGAAAT+TGG 0.332578 1_3:-3444991 Msa0097610:CDS
GAAGATTTCTGTTTCAAAAC+AGG 0.345157 1_3:+3444777 None:intergenic
ATTGATTGAAATGTTGTTGA+TGG 0.345273 1_3:-3445273 Msa0097610:CDS
CATAACTCTTGCATTGTTGT+TGG 0.349959 1_3:+3445719 None:intergenic
GGAAAATGGCGGGGTTGGTT+TGG 0.353204 1_3:-3445477 Msa0097610:CDS
TGCATTGGTTCAAGTGAGAT+TGG 0.353424 1_3:+3445824 None:intergenic
GGATGTTCAAGGAAGAGTTT+TGG 0.360543 1_3:-3445606 Msa0097610:CDS
CAACAACAATGCAAGAGTTA+TGG 0.362659 1_3:-3445718 Msa0097610:CDS
AGACCAATTAATATCCCATT+TGG 0.368703 1_3:+3445161 None:intergenic
AAGGATGTTGGATCTATCAT+AGG 0.371646 1_3:+3445772 None:intergenic
AAATTTGAATAACGAGTGTT+TGG 0.375150 1_3:-3445045 Msa0097610:CDS
TGACCTGTGCAAAGTGTAAC+AGG 0.377472 1_3:+3445797 None:intergenic
ACCACATTAGGTATAATGTT+TGG 0.378726 1_3:+3444954 None:intergenic
GCATCCAGCTAAAGTTTCAT+TGG 0.383621 1_3:-3445348 Msa0097610:CDS
AGGAAAACAGTGTTGGAAAA+TGG 0.387358 1_3:-3445491 Msa0097610:CDS
AACAACAATGCAAGAGTTAT+GGG 0.388335 1_3:-3445717 Msa0097610:CDS
TGAGATTAATAATCCTTTGT+TGG 0.392736 1_3:-3445966 Msa0097610:CDS
GATAGCACTTTACATATTAG+AGG 0.398032 1_3:-3445021 Msa0097610:CDS
GAGATTAATAATCCTTTGTT+GGG 0.398485 1_3:-3445965 Msa0097610:CDS
AAAGGCTGTGGAAGCTGGAT+TGG 0.406186 1_3:-3444838 Msa0097610:CDS
AAGTAGAGTCAAAGCTCTTA+AGG 0.410312 1_3:-3445549 Msa0097610:CDS
TGAAAACCATTTAAGGATGT+TGG 0.416261 1_3:+3445760 None:intergenic
TTTGGTTGGATTATTGAGAT+TGG 0.418112 1_3:-3445201 Msa0097610:CDS
GCTTCAAAGGCTGTGGAAGC+TGG 0.429451 1_3:-3444843 Msa0097610:CDS
TGAAATGTTGTTGATGGAAG+TGG 0.440393 1_3:-3445267 Msa0097610:CDS
CAATTGTTTGAGAGTGTTGT+TGG 0.445240 1_3:+3445679 None:intergenic
AGAGATAAGAAACATCCAAA+TGG 0.458686 1_3:-3445176 Msa0097610:CDS
TCAAACAATTGATCTTTACT+TGG 0.459813 1_3:-3445667 Msa0097610:CDS
TTGTTTCTCATGTTTGTGCT+AGG 0.464535 1_3:-3445511 Msa0097610:CDS
ATCAACATCTTGACCACATT+AGG 0.469429 1_3:+3444942 None:intergenic
AGTGGAAAGAAATGAAACTA+TGG 0.477086 1_3:-3445249 Msa0097610:CDS
TGGTTCTCACACAAGTACTT+AGG 0.487678 1_3:-3445647 Msa0097610:CDS
GTTGTTGATATTATGAATGA+AGG 0.490566 1_3:-3445326 Msa0097610:CDS
AATTGTTTGAGAGTGTTGTT+GGG 0.500960 1_3:+3445680 None:intergenic
GAGATAAGAAACATCCAAAT+GGG 0.501701 1_3:-3445175 Msa0097610:CDS
GAGACACTCAAGAAGGTAAA+GGG 0.502037 1_3:-3445575 Msa0097610:CDS
ATTGGACATATAAACACATA+AGG 0.504104 1_3:+3445842 None:intergenic
AAACAGTGTTGGAAAATGGC+GGG 0.518645 1_3:-3445487 Msa0097610:CDS
AAGAAGCTTGAGGATGTTCA+AGG 0.520273 1_3:-3445617 Msa0097610:CDS
GTGTTGGAAAATGGCGGGGT+TGG 0.525268 1_3:-3445482 Msa0097610:CDS
ACAACCAATGAAACTTTAGC+TGG 0.528214 1_3:+3445344 None:intergenic
GGAGACACTCAAGAAGGTAA+AGG 0.529677 1_3:-3445576 Msa0097610:CDS
AGTGTAACAGGCTCTTGCAT+TGG 0.532871 1_3:+3445809 None:intergenic
GGTAAAATCTCAATCAATTG+CGG 0.551711 1_3:+3445068 None:intergenic
ACCTGAAGAATGTGCTTCAA+AGG 0.554133 1_3:-3444856 Msa0097610:CDS
AGAATGTGCTTCAAAGGCTG+TGG 0.559930 1_3:-3444850 Msa0097610:CDS
GTATTGTCAACACTTGAAGA+AGG 0.568213 1_3:-3444999 Msa0097610:CDS
TCCAAACATTATACCTAATG+TGG 0.574326 1_3:-3444955 Msa0097610:CDS
GAGCCTGTTACACTTTGCAC+AGG 0.589911 1_3:-3445800 Msa0097610:CDS
AGAAGCTCTATGATAAGCAT+AGG 0.590919 1_3:-3445098 Msa0097610:CDS
GATGTTTCAAAACCCAACAA+AGG 0.598829 1_3:+3445953 None:intergenic
TTGTGCTAGGAAAACAGTGT+TGG 0.603588 1_3:-3445498 Msa0097610:CDS
TATTGTCAACACTTGAAGAA+GGG 0.604875 1_3:-3444998 Msa0097610:CDS
AACATTGGAGACACTCAAGA+AGG 0.620353 1_3:-3445582 Msa0097610:CDS
AACAGTGTTGGAAAATGGCG+GGG 0.621402 1_3:-3445486 Msa0097610:CDS
GTTGTTGGTTGTGAAGCTAT+CGG 0.633853 1_3:-3445422 Msa0097610:CDS
AAAACAGTGTTGGAAAATGG+CGG 0.637218 1_3:-3445488 Msa0097610:CDS
AGGAATGAAGAAGAAGCTTG+AGG 0.637995 1_3:-3445627 Msa0097610:CDS
TTATTGCTTGTGATTCAGAG+TGG 0.747357 1_3:-3444807 Msa0097610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TGAGATTAATAATCCTTTGT+TGG - chr1_3:3444706-3444725 Msa0097610:CDS 25.0%
! GAGATTAATAATCCTTTGTT+GGG - chr1_3:3444707-3444726 Msa0097610:CDS 25.0%
! ATTGGACATATAAACACATA+AGG + chr1_3:3444833-3444852 None:intergenic 25.0%
! TCAAACAATTGATCTTTACT+TGG - chr1_3:3445005-3445024 Msa0097610:CDS 25.0%
! GTTGTTGATATTATGAATGA+AGG - chr1_3:3445346-3445365 Msa0097610:CDS 25.0%
! ATTGATTGAAATGTTGTTGA+TGG - chr1_3:3445399-3445418 Msa0097610:CDS 25.0%
! AAACACTCGTTATTCAAATT+TGG + chr1_3:3445628-3445647 None:intergenic 25.0%
! AAATTTGAATAACGAGTGTT+TGG - chr1_3:3445627-3445646 Msa0097610:CDS 25.0%
!! AATTTGCACTGTCAATTTTA+TGG - chr1_3:3445776-3445795 Msa0097610:CDS 25.0%
!! ATTTGCACTGTCAATTTTAT+GGG - chr1_3:3445777-3445796 Msa0097610:CDS 25.0%
! TGAGATTAATAATCCTTTGT+TGG - chr1_3:3444706-3444725 Msa0097610:CDS 25.0%
! GAGATTAATAATCCTTTGTT+GGG - chr1_3:3444707-3444726 Msa0097610:CDS 25.0%
! ATTGGACATATAAACACATA+AGG + chr1_3:3444833-3444852 None:intergenic 25.0%
! TCAAACAATTGATCTTTACT+TGG - chr1_3:3445005-3445024 Msa0097610:CDS 25.0%
! GTTGTTGATATTATGAATGA+AGG - chr1_3:3445346-3445365 Msa0097610:CDS 25.0%
! ATTGATTGAAATGTTGTTGA+TGG - chr1_3:3445399-3445418 Msa0097610:CDS 25.0%
! AAACACTCGTTATTCAAATT+TGG + chr1_3:3445628-3445647 None:intergenic 25.0%
! AAATTTGAATAACGAGTGTT+TGG - chr1_3:3445627-3445646 Msa0097610:CDS 25.0%
!! AATTTGCACTGTCAATTTTA+TGG - chr1_3:3445776-3445795 Msa0097610:CDS 25.0%
!! ATTTGCACTGTCAATTTTAT+GGG - chr1_3:3445777-3445796 Msa0097610:CDS 25.0%
!!! GGTTTTGAAACATCTTTCAA+AGG - chr1_3:3444728-3444747 Msa0097610:CDS 30.0%
ATAGATCCAACATCCTTAAA+TGG - chr1_3:3444906-3444925 Msa0097610:CDS 30.0%
TGAAAACCATTTAAGGATGT+TGG + chr1_3:3444915-3444934 None:intergenic 30.0%
! ATCCTTAAATGGTTTTCACT+TGG - chr1_3:3444917-3444936 Msa0097610:CDS 30.0%
AACAACAATGCAAGAGTTAT+GGG - chr1_3:3444955-3444974 Msa0097610:CDS 30.0%
!! AATTGTTTGAGAGTGTTGTT+GGG + chr1_3:3444995-3445014 None:intergenic 30.0%
! TCTTTTACTTCACATGTTGT+TGG - chr1_3:3445235-3445254 Msa0097610:CDS 30.0%
TATCGGTATCATTGTGAATT+TGG - chr1_3:3445267-3445286 Msa0097610:CDS 30.0%
AGTGGAAAGAAATGAAACTA+TGG - chr1_3:3445423-3445442 Msa0097610:CDS 30.0%
!!! TGTTTCAAGTTTGAGTCTTT+TGG - chr1_3:3445453-3445472 Msa0097610:CDS 30.0%
TTTGGTTGGATTATTGAGAT+TGG - chr1_3:3445471-3445490 Msa0097610:CDS 30.0%
AGAGATAAGAAACATCCAAA+TGG - chr1_3:3445496-3445515 Msa0097610:CDS 30.0%
GAGATAAGAAACATCCAAAT+GGG - chr1_3:3445497-3445516 Msa0097610:CDS 30.0%
CATCCAAATGGGATATTAAT+TGG - chr1_3:3445508-3445527 Msa0097610:CDS 30.0%
AGACCAATTAATATCCCATT+TGG + chr1_3:3445514-3445533 None:intergenic 30.0%
GGTAAAATCTCAATCAATTG+CGG + chr1_3:3445607-3445626 None:intergenic 30.0%
GATAGCACTTTACATATTAG+AGG - chr1_3:3445651-3445670 Msa0097610:CDS 30.0%
TATTGTCAACACTTGAAGAA+GGG - chr1_3:3445674-3445693 Msa0097610:CDS 30.0%
TCCAAACATTATACCTAATG+TGG - chr1_3:3445717-3445736 Msa0097610:CDS 30.0%
ACCACATTAGGTATAATGTT+TGG + chr1_3:3445721-3445740 None:intergenic 30.0%
GAAGATTTCTGTTTCAAAAC+AGG + chr1_3:3445898-3445917 None:intergenic 30.0%
!!! GGTTTTGAAACATCTTTCAA+AGG - chr1_3:3444728-3444747 Msa0097610:CDS 30.0%
ATAGATCCAACATCCTTAAA+TGG - chr1_3:3444906-3444925 Msa0097610:CDS 30.0%
TGAAAACCATTTAAGGATGT+TGG + chr1_3:3444915-3444934 None:intergenic 30.0%
! ATCCTTAAATGGTTTTCACT+TGG - chr1_3:3444917-3444936 Msa0097610:CDS 30.0%
AACAACAATGCAAGAGTTAT+GGG - chr1_3:3444955-3444974 Msa0097610:CDS 30.0%
!! AATTGTTTGAGAGTGTTGTT+GGG + chr1_3:3444995-3445014 None:intergenic 30.0%
! TCTTTTACTTCACATGTTGT+TGG - chr1_3:3445235-3445254 Msa0097610:CDS 30.0%
TATCGGTATCATTGTGAATT+TGG - chr1_3:3445267-3445286 Msa0097610:CDS 30.0%
AGTGGAAAGAAATGAAACTA+TGG - chr1_3:3445423-3445442 Msa0097610:CDS 30.0%
!!! TGTTTCAAGTTTGAGTCTTT+TGG - chr1_3:3445453-3445472 Msa0097610:CDS 30.0%
TTTGGTTGGATTATTGAGAT+TGG - chr1_3:3445471-3445490 Msa0097610:CDS 30.0%
AGAGATAAGAAACATCCAAA+TGG - chr1_3:3445496-3445515 Msa0097610:CDS 30.0%
GAGATAAGAAACATCCAAAT+GGG - chr1_3:3445497-3445516 Msa0097610:CDS 30.0%
CATCCAAATGGGATATTAAT+TGG - chr1_3:3445508-3445527 Msa0097610:CDS 30.0%
AGACCAATTAATATCCCATT+TGG + chr1_3:3445514-3445533 None:intergenic 30.0%
GGTAAAATCTCAATCAATTG+CGG + chr1_3:3445607-3445626 None:intergenic 30.0%
GATAGCACTTTACATATTAG+AGG - chr1_3:3445651-3445670 Msa0097610:CDS 30.0%
TATTGTCAACACTTGAAGAA+GGG - chr1_3:3445674-3445693 Msa0097610:CDS 30.0%
TCCAAACATTATACCTAATG+TGG - chr1_3:3445717-3445736 Msa0097610:CDS 30.0%
ACCACATTAGGTATAATGTT+TGG + chr1_3:3445721-3445740 None:intergenic 30.0%
GAAGATTTCTGTTTCAAAAC+AGG + chr1_3:3445898-3445917 None:intergenic 30.0%
GATGTTTCAAAACCCAACAA+AGG + chr1_3:3444722-3444741 None:intergenic 35.0%
AAGGATGTTGGATCTATCAT+AGG + chr1_3:3444903-3444922 None:intergenic 35.0%
GACCAAGTGAAAACCATTTA+AGG + chr1_3:3444922-3444941 None:intergenic 35.0%
CATAACTCTTGCATTGTTGT+TGG + chr1_3:3444956-3444975 None:intergenic 35.0%
CAACAACAATGCAAGAGTTA+TGG - chr1_3:3444954-3444973 Msa0097610:CDS 35.0%
!! CAATTGTTTGAGAGTGTTGT+TGG + chr1_3:3444996-3445015 None:intergenic 35.0%
!!! AGGAAGAGTTTTGGAAACAT+TGG - chr1_3:3445075-3445094 Msa0097610:CDS 35.0%
AAGTAGAGTCAAAGCTCTTA+AGG - chr1_3:3445123-3445142 Msa0097610:CDS 35.0%
TCAAAGCTCTTAAGGATCTT+AGG - chr1_3:3445131-3445150 Msa0097610:CDS 35.0%
! TTGTTTCTCATGTTTGTGCT+AGG - chr1_3:3445161-3445180 Msa0097610:CDS 35.0%
! AGGAAAACAGTGTTGGAAAA+TGG - chr1_3:3445181-3445200 Msa0097610:CDS 35.0%
! AAAACAGTGTTGGAAAATGG+CGG - chr1_3:3445184-3445203 Msa0097610:CDS 35.0%
!! GGTTTGGTTTGTTCTTTGTT+AGG - chr1_3:3445211-3445230 Msa0097610:CDS 35.0%
ACAACCAATGAAACTTTAGC+TGG + chr1_3:3445331-3445350 None:intergenic 35.0%
! TGAAATGTTGTTGATGGAAG+TGG - chr1_3:3445405-3445424 Msa0097610:CDS 35.0%
! TCAAGTTTGAGTCTTTTGGT+TGG - chr1_3:3445457-3445476 Msa0097610:CDS 35.0%
AGAAGCTCTATGATAAGCAT+AGG - chr1_3:3445574-3445593 Msa0097610:CDS 35.0%
GTATTGTCAACACTTGAAGA+AGG - chr1_3:3445673-3445692 Msa0097610:CDS 35.0%
AACACTTGAAGAAGGGAAAT+TGG - chr1_3:3445681-3445700 Msa0097610:CDS 35.0%
ATCAACATCTTGACCACATT+AGG + chr1_3:3445733-3445752 None:intergenic 35.0%
TTATTGCTTGTGATTCAGAG+TGG - chr1_3:3445865-3445884 Msa0097610:CDS 35.0%
GATGTTTCAAAACCCAACAA+AGG + chr1_3:3444722-3444741 None:intergenic 35.0%
AAGGATGTTGGATCTATCAT+AGG + chr1_3:3444903-3444922 None:intergenic 35.0%
GACCAAGTGAAAACCATTTA+AGG + chr1_3:3444922-3444941 None:intergenic 35.0%
CATAACTCTTGCATTGTTGT+TGG + chr1_3:3444956-3444975 None:intergenic 35.0%
CAACAACAATGCAAGAGTTA+TGG - chr1_3:3444954-3444973 Msa0097610:CDS 35.0%
!! CAATTGTTTGAGAGTGTTGT+TGG + chr1_3:3444996-3445015 None:intergenic 35.0%
!!! AGGAAGAGTTTTGGAAACAT+TGG - chr1_3:3445075-3445094 Msa0097610:CDS 35.0%
AAGTAGAGTCAAAGCTCTTA+AGG - chr1_3:3445123-3445142 Msa0097610:CDS 35.0%
TCAAAGCTCTTAAGGATCTT+AGG - chr1_3:3445131-3445150 Msa0097610:CDS 35.0%
! TTGTTTCTCATGTTTGTGCT+AGG - chr1_3:3445161-3445180 Msa0097610:CDS 35.0%
! AGGAAAACAGTGTTGGAAAA+TGG - chr1_3:3445181-3445200 Msa0097610:CDS 35.0%
! AAAACAGTGTTGGAAAATGG+CGG - chr1_3:3445184-3445203 Msa0097610:CDS 35.0%
!! GGTTTGGTTTGTTCTTTGTT+AGG - chr1_3:3445211-3445230 Msa0097610:CDS 35.0%
ACAACCAATGAAACTTTAGC+TGG + chr1_3:3445331-3445350 None:intergenic 35.0%
! TGAAATGTTGTTGATGGAAG+TGG - chr1_3:3445405-3445424 Msa0097610:CDS 35.0%
! TCAAGTTTGAGTCTTTTGGT+TGG - chr1_3:3445457-3445476 Msa0097610:CDS 35.0%
AGAAGCTCTATGATAAGCAT+AGG - chr1_3:3445574-3445593 Msa0097610:CDS 35.0%
GTATTGTCAACACTTGAAGA+AGG - chr1_3:3445673-3445692 Msa0097610:CDS 35.0%
AACACTTGAAGAAGGGAAAT+TGG - chr1_3:3445681-3445700 Msa0097610:CDS 35.0%
ATCAACATCTTGACCACATT+AGG + chr1_3:3445733-3445752 None:intergenic 35.0%
TTATTGCTTGTGATTCAGAG+TGG - chr1_3:3445865-3445884 Msa0097610:CDS 35.0%
!! TGCATTGGTTCAAGTGAGAT+TGG + chr1_3:3444851-3444870 None:intergenic 40.0%
TGGTTCTCACACAAGTACTT+AGG - chr1_3:3445025-3445044 Msa0097610:CDS 40.0%
AGGAATGAAGAAGAAGCTTG+AGG - chr1_3:3445045-3445064 Msa0097610:CDS 40.0%
AAGAAGCTTGAGGATGTTCA+AGG - chr1_3:3445055-3445074 Msa0097610:CDS 40.0%
! GGATGTTCAAGGAAGAGTTT+TGG - chr1_3:3445066-3445085 Msa0097610:CDS 40.0%
AACATTGGAGACACTCAAGA+AGG - chr1_3:3445090-3445109 Msa0097610:CDS 40.0%
GAGACACTCAAGAAGGTAAA+GGG - chr1_3:3445097-3445116 Msa0097610:CDS 40.0%
TTGTGCTAGGAAAACAGTGT+TGG - chr1_3:3445174-3445193 Msa0097610:CDS 40.0%
! AAACAGTGTTGGAAAATGGC+GGG - chr1_3:3445185-3445204 Msa0097610:CDS 40.0%
! GTTGTTGGTTGTGAAGCTAT+CGG - chr1_3:3445250-3445269 Msa0097610:CDS 40.0%
GCATCCAGCTAAAGTTTCAT+TGG - chr1_3:3445324-3445343 Msa0097610:CDS 40.0%
ACCTGAAGAATGTGCTTCAA+AGG - chr1_3:3445816-3445835 Msa0097610:CDS 40.0%
!! TGCATTGGTTCAAGTGAGAT+TGG + chr1_3:3444851-3444870 None:intergenic 40.0%
TGGTTCTCACACAAGTACTT+AGG - chr1_3:3445025-3445044 Msa0097610:CDS 40.0%
AGGAATGAAGAAGAAGCTTG+AGG - chr1_3:3445045-3445064 Msa0097610:CDS 40.0%
AAGAAGCTTGAGGATGTTCA+AGG - chr1_3:3445055-3445074 Msa0097610:CDS 40.0%
! GGATGTTCAAGGAAGAGTTT+TGG - chr1_3:3445066-3445085 Msa0097610:CDS 40.0%
AACATTGGAGACACTCAAGA+AGG - chr1_3:3445090-3445109 Msa0097610:CDS 40.0%
GAGACACTCAAGAAGGTAAA+GGG - chr1_3:3445097-3445116 Msa0097610:CDS 40.0%
TTGTGCTAGGAAAACAGTGT+TGG - chr1_3:3445174-3445193 Msa0097610:CDS 40.0%
! AAACAGTGTTGGAAAATGGC+GGG - chr1_3:3445185-3445204 Msa0097610:CDS 40.0%
! GTTGTTGGTTGTGAAGCTAT+CGG - chr1_3:3445250-3445269 Msa0097610:CDS 40.0%
GCATCCAGCTAAAGTTTCAT+TGG - chr1_3:3445324-3445343 Msa0097610:CDS 40.0%
ACCTGAAGAATGTGCTTCAA+AGG - chr1_3:3445816-3445835 Msa0097610:CDS 40.0%
AGTGTAACAGGCTCTTGCAT+TGG + chr1_3:3444866-3444885 None:intergenic 45.0%
TGACCTGTGCAAAGTGTAAC+AGG + chr1_3:3444878-3444897 None:intergenic 45.0%
GGAGACACTCAAGAAGGTAA+AGG - chr1_3:3445096-3445115 Msa0097610:CDS 45.0%
! AACAGTGTTGGAAAATGGCG+GGG - chr1_3:3445186-3445205 Msa0097610:CDS 45.0%
!! GCCTTTGAAGCACATTCTTC+AGG + chr1_3:3445820-3445839 None:intergenic 45.0%
AGAATGTGCTTCAAAGGCTG+TGG - chr1_3:3445822-3445841 Msa0097610:CDS 45.0%
AGTGTAACAGGCTCTTGCAT+TGG + chr1_3:3444866-3444885 None:intergenic 45.0%
TGACCTGTGCAAAGTGTAAC+AGG + chr1_3:3444878-3444897 None:intergenic 45.0%
GGAGACACTCAAGAAGGTAA+AGG - chr1_3:3445096-3445115 Msa0097610:CDS 45.0%
! AACAGTGTTGGAAAATGGCG+GGG - chr1_3:3445186-3445205 Msa0097610:CDS 45.0%
!! GCCTTTGAAGCACATTCTTC+AGG + chr1_3:3445820-3445839 None:intergenic 45.0%
AGAATGTGCTTCAAAGGCTG+TGG - chr1_3:3445822-3445841 Msa0097610:CDS 45.0%
GAGCCTGTTACACTTTGCAC+AGG - chr1_3:3444872-3444891 Msa0097610:CDS 50.0%
AAAGGCTGTGGAAGCTGGAT+TGG - chr1_3:3445834-3445853 Msa0097610:CDS 50.0%
GAGCCTGTTACACTTTGCAC+AGG - chr1_3:3444872-3444891 Msa0097610:CDS 50.0%
AAAGGCTGTGGAAGCTGGAT+TGG - chr1_3:3445834-3445853 Msa0097610:CDS 50.0%
! GTGTTGGAAAATGGCGGGGT+TGG - chr1_3:3445190-3445209 Msa0097610:CDS 55.0%
!! GGAAAATGGCGGGGTTGGTT+TGG - chr1_3:3445195-3445214 Msa0097610:CDS 55.0%
GCTTCAAAGGCTGTGGAAGC+TGG - chr1_3:3445829-3445848 Msa0097610:CDS 55.0%
! GTGTTGGAAAATGGCGGGGT+TGG - chr1_3:3445190-3445209 Msa0097610:CDS 55.0%
!! GGAAAATGGCGGGGTTGGTT+TGG - chr1_3:3445195-3445214 Msa0097610:CDS 55.0%
GCTTCAAAGGCTGTGGAAGC+TGG - chr1_3:3445829-3445848 Msa0097610:CDS 55.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 3444695 3445999 3444695 ID=Msa0097610;Name=Msa0097610
chr1_3 mRNA 3444695 3445999 3444695 ID=Msa0097610-mRNA-1;Parent=Msa0097610;Name=Msa0097610-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|434
chr1_3 exon 3444695 3445999 3444695 ID=Msa0097610-mRNA-1:exon:1036;Parent=Msa0097610-mRNA-1
chr1_3 CDS 3444695 3445999 3444695 ID=Msa0097610-mRNA-1:cds;Parent=Msa0097610-mRNA-1
Gene Sequence

>Msa0097610

ATGCTTTCATATGAGATTAATAATCCTTTGTTGGGTTTTGAAACATCTTTCAAAGGTTGTTTTTTTAGTGTCTTAGACACTGAAAAAATAGATCTCAAGTTGATAATTGAAGAGCTTGATTCAATTGATGATGTTCCTTATGTGTTTATATGTCCAATCTCACTTGAACCAATGCAAGAGCCTGTTACACTTTGCACAGGTCAAACCTATGATAGATCCAACATCCTTAAATGGTTTTCACTTGGTCACAAAACATGTCCAACAACAATGCAAGAGTTATGGGATGATTCAATCACTCCCAACAACACTCTCAAACAATTGATCTTTACTTGGTTCTCACACAAGTACTTAGGAATGAAGAAGAAGCTTGAGGATGTTCAAGGAAGAGTTTTGGAAACATTGGAGACACTCAAGAAGGTAAAGGGTCAAAGTAGAGTCAAAGCTCTTAAGGATCTTAGGAAACTTGTTGTTTCTCATGTTTGTGCTAGGAAAACAGTGTTGGAAAATGGCGGGGTTGGTTTGGTTTGTTCTTTGTTAGGTTCTTTTACTTCACATGTTGTTGGTTGTGAAGCTATCGGTATCATTGTGAATTTGGATTTGAGTTTAGAATTGAAGAGAAAGTATCTTATGCATCCAGCTAAAGTTTCATTGGTTGTTGATATTATGAATGAAGGAACTATTGAAACAAAGATGAATTGTGCTAAATTGATTGAAATGTTGTTGATGGAAGTGGAAAGAAATGAAACTATGGTTGAGATTGTTTCAAGTTTGAGTCTTTTGGTTGGATTATTGAGATTGGTGAGAGATAAGAAACATCCAAATGGGATATTAATTGGTCTCACATTGCTTAAAAAAGTATTATGTTGTCATGAATCAATTAGAAGCTCTATGATAAGCATAGGAGCAATTCCGCAATTGATTGAGATTTTACCAAATTTGAATAACGAGTGTTTGGAGATAGCACTTTACATATTAGAGGTATTGTCAACACTTGAAGAAGGGAAATTGGCATTGAAAGAATGTCCAAACATTATACCTAATGTGGTCAAGATGTTGATGAGAGTCTCAGAAAATTGTACACAATTTGCACTGTCAATTTTATGGGCTATTTACAAGCTTGCACCTGAAGAATGTGCTTCAAAGGCTGTGGAAGCTGGATTGGCTTCAAAATTATTGCTTGTGATTCAGAGTGGTTGTAATCCTGTTTTGAAACAGAAATCTTCTGAGTTTTTGAAAATGTGTAGTGTGAATTATTCTACTAGTATTTTTATTTCTAAGTGTATGCTTACTACAACAATACAATGA

Protein sequence

>Msa0097610

MLSYEINNPLLGFETSFKGCFFSVLDTEKIDLKLIIEELDSIDDVPYVFICPISLEPMQEPVTLCTGQTYDRSNILKWFSLGHKTCPTTMQELWDDSITPNNTLKQLIFTWFSHKYLGMKKKLEDVQGRVLETLETLKKVKGQSRVKALKDLRKLVVSHVCARKTVLENGGVGLVCSLLGSFTSHVVGCEAIGIIVNLDLSLELKRKYLMHPAKVSLVVDIMNEGTIETKMNCAKLIEMLLMEVERNETMVEIVSSLSLLVGLLRLVRDKKHPNGILIGLTLLKKVLCCHESIRSSMISIGAIPQLIEILPNLNNECLEIALYILEVLSTLEEGKLALKECPNIIPNVVKMLMRVSENCTQFALSILWAIYKLAPEECASKAVEAGLASKLLLVIQSGCNPVLKQKSSEFLKMCSVNYSTSIFISKCMLTTTIQ*