AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0085370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0085370 MtrunA17_Chr1g0200731 97.907 430 9 0 1 430 68 497 0.0 864
Msa0085370 MtrunA17_Chr3g0124851 45.522 134 65 4 3 130 10 141 1.83e-28 117
Msa0085370 MtrunA17_Chr3g0124851 29.412 119 79 3 16 130 365 482 7.02e-11 63.9
Msa0085370 MtrunA17_Chr2g0326581 29.619 341 202 10 28 350 80 400 1.71e-22 100
Msa0085370 MtrunA17_Chr1g0194961 39.316 117 68 2 31 145 34 149 7.00e-21 93.6
Msa0085370 MtrunA17_Chr4g0029181 30.868 311 187 9 20 315 94 391 1.64e-19 90.9
Msa0085370 MtrunA17_Chr7g0271721 38.938 113 66 2 28 138 26 137 1.54e-18 86.7
Msa0085370 MtrunA17_Chr7g0271721 42.453 106 49 4 28 128 144 242 1.23e-14 75.1
Msa0085370 MtrunA17_Chr5g0438731 40.000 115 59 4 28 139 61 168 9.97e-17 82.0
Msa0085370 MtrunA17_Chr5g0438731 28.700 223 135 5 31 232 195 414 6.10e-15 76.6
Msa0085370 MtrunA17_Chr4g0041801 33.058 121 66 2 29 134 144 264 2.59e-14 74.7
Msa0085370 MtrunA17_Chr2g0287471 39.130 115 61 5 28 140 30 137 8.37e-14 72.4
Msa0085370 MtrunA17_Chr1g0201781 35.714 98 58 3 34 129 68 162 8.99e-14 69.3
Msa0085370 MtrunA17_Chr2g0331681 30.159 126 88 0 31 156 67 192 9.63e-14 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0085370 AT1G35620.1 60.048 413 160 4 22 430 28 439 0.0 513
Msa0085370 AT1G21750.2 41.791 134 69 4 5 130 6 138 6.77e-26 110
Msa0085370 AT1G21750.1 41.791 134 69 4 5 130 6 138 6.93e-26 110
Msa0085370 AT1G77510.1 33.929 224 123 8 28 237 31 243 2.69e-24 105
Msa0085370 AT1G77510.1 34.615 104 64 3 29 130 376 477 9.27e-11 64.3
Msa0085370 AT3G54960.2 28.981 314 201 10 15 315 86 390 3.11e-23 102
Msa0085370 AT3G54960.1 28.981 314 201 10 15 315 86 390 4.47e-23 102
Msa0085370 AT5G60640.2 27.703 296 196 7 28 313 105 392 2.73e-21 96.7
Msa0085370 AT5G60640.1 27.703 296 196 7 28 313 105 392 5.63e-21 95.9
Msa0085370 AT2G47470.2 40.000 110 63 2 31 138 28 136 1.23e-20 91.7
Msa0085370 AT2G47470.2 36.697 109 65 3 23 128 138 245 1.80e-15 76.6
Msa0085370 AT2G47470.3 40.000 110 63 2 31 138 28 136 2.45e-20 91.7
Msa0085370 AT2G47470.3 36.697 109 65 3 23 128 138 245 3.13e-15 76.6
Msa0085370 AT2G47470.4 40.000 110 63 2 31 138 28 136 2.66e-20 92.0
Msa0085370 AT2G47470.4 36.697 109 65 3 23 128 138 245 3.02e-15 77.0
Msa0085370 AT2G47470.1 40.000 110 63 2 31 138 28 136 3.15e-20 92.0
Msa0085370 AT2G47470.1 36.697 109 65 3 23 128 138 245 3.69e-15 77.0
Msa0085370 AT5G60640.3 27.969 261 173 6 28 281 105 357 2.75e-19 90.5
Msa0085370 AT2G32920.1 34.507 142 77 5 3 142 14 141 1.79e-16 81.6
Msa0085370 AT2G32920.1 27.027 222 138 5 31 231 167 385 1.22e-13 72.8
Msa0085370 AT1G04980.1 34.266 143 79 6 3 142 13 143 2.09e-15 78.2
Msa0085370 AT1G04980.1 27.753 227 132 6 31 232 172 391 3.20e-15 77.8
Msa0085370 AT1G52260.1 29.279 222 135 7 28 237 79 290 1.30e-13 73.2
Msa0085370 AT3G16110.1 24.255 235 162 4 18 242 66 294 2.39e-13 72.4
Msa0085370 AT1G76760.1 33.628 113 70 3 18 129 57 165 5.94e-13 67.4
Msa0085370 AT1G43560.1 41.026 78 42 2 34 110 66 140 3.85e-12 64.7

Find 83 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCACTAAATGAGTTCTTTA+TGG 0.104563 1_2:+65439297 None:intergenic
GCAAATCGTGACTTAATATT+TGG 0.148394 1_2:-65440666 Msa0085370:CDS
TTCCCAGTATATATAGGTTT+TGG 0.148916 1_2:-65443122 Msa0085370:CDS
CAATAACTTAACAAGTTCTT+TGG 0.226371 1_2:+65440704 None:intergenic
GCTCATTGTACAGTGGATTA+AGG 0.240385 1_2:+65442970 None:intergenic
AACCCAAAACCTATATATAC+TGG 0.277212 1_2:+65443119 None:intergenic
ACCTTTCCATCAACCGATAA+TGG 0.290779 1_2:+65444440 None:intergenic
ATAAGAACATAAGTTTAGTT+TGG 0.301329 1_2:+65438937 None:intergenic
TTCTAATGTCGAAAGATCTA+TGG 0.336526 1_2:+65439254 None:intergenic
TTGTCGTGCTGAACCATTAT+CGG 0.338794 1_2:-65444453 Msa0085370:CDS
TTTAGAATTACCATGCCTTT+TGG 0.344568 1_2:-65439010 Msa0085370:three_prime_UTR
AAGCATTGAAGGAGAGGATC+AGG 0.355842 1_2:-65439365 Msa0085370:CDS
AAAACAAAATCTCATTCCTT+TGG 0.358538 1_2:-65440820 Msa0085370:CDS
CCCATGATTAAACAGCAAAA+TGG 0.374127 1_2:+65443280 None:intergenic
GACTTAATATTTGGTTATGT+TGG 0.399153 1_2:-65440657 Msa0085370:CDS
CATCAACTTAAGTGTCTCAT+AGG 0.401128 1_2:+65440785 None:intergenic
CTTCGATAAGATTCCTGCCT+TGG 0.402929 1_2:-65442997 Msa0085370:CDS
CTCATTGTACAGTGGATTAA+GGG 0.409749 1_2:+65442971 None:intergenic
AAGAACTTGTTAAGTTATTG+AGG 0.421672 1_2:-65440701 Msa0085370:CDS
GCCTGTACTTGCAGCCTTGA+AGG 0.424459 1_2:-65443482 Msa0085370:CDS
GAAATAAACTAACCTTCAAA+TGG 0.433269 1_2:+65442930 None:intergenic
TTAATGCTTATTCAAACCTT+AGG 0.438716 1_2:-65439199 Msa0085370:CDS
TAAAGAAGATGAGTATCTTT+CGG 0.440421 1_2:-65440562 Msa0085370:intron
CAAATCACTAAATTTCTAGA+AGG 0.440849 1_2:-65439337 Msa0085370:CDS
ATCATCTCCTTTACTACCTA+AGG 0.442205 1_2:+65439183 None:intergenic
GCTGAACCATTATCGGTTGA+TGG 0.444757 1_2:-65444446 Msa0085370:CDS
TTCATCCTTCGATCACATCT+TGG 0.449806 1_2:-65444381 Msa0085370:CDS
TCCTTCAAGGCTGCAAGTAC+AGG 0.452113 1_2:+65443481 None:intergenic
AGAACTTGTTAAGTTATTGA+GGG 0.452218 1_2:-65440700 Msa0085370:CDS
AACATAAGTTTAGTTTGGAC+AGG 0.455471 1_2:+65438942 None:intergenic
GATCATCACTTAATTATAGC+TGG 0.455997 1_2:-65439034 Msa0085370:three_prime_UTR
CCTTCTGAGGTAGAGCTGCT+TGG 0.459228 1_2:+65439118 None:intergenic
CTTGGTCCGCGATATTCAGT+TGG 0.466847 1_2:+65443254 None:intergenic
TTAGTTATTTCTTGACATGA+AGG 0.469957 1_2:-65438901 Msa0085370:three_prime_UTR
TGGTTGATTTCTACGCTCCT+TGG 0.470298 1_2:-65444361 Msa0085370:CDS
ATTCAAACCTTAGGTAGTAA+AGG 0.472205 1_2:-65439190 Msa0085370:CDS
TTGGTCCGCGATATTCAGTT+GGG 0.476722 1_2:+65443255 None:intergenic
AGCAGAATCTGAATCGAGAA+TGG 0.476767 1_2:+65443178 None:intergenic
AATGAGTATAGGTTCCTTCA+AGG 0.477797 1_2:+65443468 None:intergenic
ACCATAAAGAACTCATTTAG+TGG 0.489496 1_2:-65439298 Msa0085370:CDS
TAGATCTTTCGACATTAGAA+TGG 0.490056 1_2:-65439251 Msa0085370:CDS
GATGTGATCGAAGGATGAAA+TGG 0.493338 1_2:+65444385 None:intergenic
TTAAGTGTCTCATAGGATAC+AGG 0.508310 1_2:+65440792 None:intergenic
TGAAATGGCGGAATCGAAGT+TGG 0.511617 1_2:+65444400 None:intergenic
AGTTCATTGATAGAAAAGTT+CGG 0.512411 1_2:-65443092 Msa0085370:CDS
GGAAGAAAAGAGTATAAAGA+AGG 0.513510 1_2:-65439094 Msa0085370:CDS
GTTGGTTCAGAAAGCATTGA+AGG 0.515841 1_2:-65439376 Msa0085370:CDS
ACAAGTAAATCAGCTTTCCT+TGG 0.516496 1_2:+65443236 None:intergenic
AAACAGCAAAATGGTTGGAT+AGG 0.519002 1_2:+65443289 None:intergenic
TGATTAAACAGCAAAATGGT+TGG 0.523489 1_2:+65443284 None:intergenic
GAGAGTACCAAACCAAGAAA+AGG 0.523714 1_2:-65439149 Msa0085370:CDS
AAATATTTACACATACCAAA+AGG 0.527479 1_2:+65438995 None:intergenic
ACCATTATCGGTTGATGGAA+AGG 0.529374 1_2:-65444441 Msa0085370:CDS
GGATTAAGGGAAACCAAGGC+AGG 0.543644 1_2:+65442984 None:intergenic
ATGGTTCAGCACGACAAAAG+TGG 0.545324 1_2:+65444459 None:intergenic
AATTAATTATAACATATACA+AGG 0.551019 1_2:-65439056 Msa0085370:three_prime_UTR
TTAGGTAGTAAAGGAGATGA+TGG 0.552978 1_2:-65439181 Msa0085370:CDS
TTCTGTCTTACAGTTAGATG+CGG 0.553009 1_2:-65443509 Msa0085370:intron
TTCAGAAAGCATTGAAGGAG+AGG 0.562407 1_2:-65439371 Msa0085370:CDS
ACCCAAAACCTATATATACT+GGG 0.565590 1_2:+65443120 None:intergenic
TTATGTTGGAGTTAAACAGC+TGG 0.567225 1_2:-65440643 Msa0085370:CDS
AGTTGATGAAAGCTGATGGT+AGG 0.573136 1_2:-65440770 Msa0085370:CDS
GATTTCTACGCTCCTTGGTG+TGG 0.573164 1_2:-65444356 Msa0085370:CDS
CCAAGCAGCTCTACCTCAGA+AGG 0.573325 1_2:-65439118 Msa0085370:CDS
TAGGATACAGGCACAGCCAA+AGG 0.591538 1_2:+65440804 None:intergenic
ATCAACCAAGATGTGATCGA+AGG 0.597452 1_2:+65444376 None:intergenic
TGGATAAATTGCATCAGTGA+TGG 0.598373 1_2:+65439274 None:intergenic
TTTCTAGAAGGATACAGAGA+AGG 0.608440 1_2:-65439325 Msa0085370:CDS
CTTAAGTTGATGAAAGCTGA+TGG 0.612346 1_2:-65440774 Msa0085370:CDS
CCATAAAGAACTCATTTAGT+GGG 0.620397 1_2:-65439297 Msa0085370:CDS
AGCATTGAAGGAGAGGATCA+GGG 0.623276 1_2:-65439364 Msa0085370:CDS
CAACTGAATATCGCGGACCA+AGG 0.627911 1_2:-65443253 Msa0085370:CDS
TTTACACATACCAAAAGGCA+TGG 0.628786 1_2:+65439000 None:intergenic
AGCAGCTCTACCTCAGAAGG+TGG 0.629957 1_2:-65439115 Msa0085370:CDS
CTGCAAGCGTCTCTCTCCTG+AGG 0.631362 1_2:-65444330 Msa0085370:intron
TGGCATTGATGAAATGAAAG+TGG 0.640080 1_2:-65438858 Msa0085370:three_prime_UTR
TGTCTTACAGTTAGATGCGG+CGG 0.642474 1_2:-65443506 Msa0085370:intron
CAGTGGATTAAGGGAAACCA+AGG 0.642707 1_2:+65442980 None:intergenic
GTGATCGAAGGATGAAATGG+CGG 0.654275 1_2:+65444388 None:intergenic
GTGTTACGCTCATTGTACAG+TGG 0.669544 1_2:+65442963 None:intergenic
CTTATTTATTACTTTCAACG+TGG 0.672088 1_2:-65438878 Msa0085370:three_prime_UTR
CGCTTGCAGTGACCACACCA+AGG 0.682818 1_2:+65444344 None:intergenic
GGGGTCCCAACTGAATATCG+CGG 0.700525 1_2:-65443260 Msa0085370:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAATAAATTATTTAAAGAT+TGG + chr1_2:65441618-65441637 None:intergenic 10.0%
!! CAATCTTTAAATAATTTATT+TGG - chr1_2:65441616-65441635 Msa0085370:intron 10.0%
!! TGATTTATTAGATAATAATT+GGG + chr1_2:65442113-65442132 None:intergenic 10.0%
!! TTGATTTATTAGATAATAAT+TGG + chr1_2:65442114-65442133 None:intergenic 10.0%
!! TAAACTATTTATGAAAAAAT+TGG + chr1_2:65443489-65443508 None:intergenic 10.0%
!! AATTAATTATAACATATACA+AGG - chr1_2:65444310-65444329 Msa0085370:intron 10.0%
!!! TAAAAAAAAGTTCTAAAACA+AGG - chr1_2:65439547-65439566 Msa0085370:intron 15.0%
!! TTAGTTTATTTCATACATAA+TGG - chr1_2:65440447-65440466 Msa0085370:intron 15.0%
!!! TTATATATTTTTCTTTAAGC+AGG - chr1_2:65440696-65440715 Msa0085370:CDS 15.0%
!!! TATATATTTTTCTTTAAGCA+GGG - chr1_2:65440697-65440716 Msa0085370:CDS 15.0%
!! ATATAATAACTTAACATGTA+AGG + chr1_2:65441196-65441215 None:intergenic 15.0%
!!! ACTAAAGTAATATTTTTTTC+AGG + chr1_2:65442845-65442864 None:intergenic 15.0%
!! TATAAACTTAAAAAATGTGT+TGG - chr1_2:65443895-65443914 Msa0085370:intron 15.0%
!! ATTAATGTAGAAATATGTAT+TGG + chr1_2:65443960-65443979 None:intergenic 15.0%
!!! TATTTCTACATTAATTTTTC+AGG - chr1_2:65443965-65443984 Msa0085370:intron 15.0%
!!! CAAAATCAAATTTTGAAAGT+GGG + chr1_2:65439111-65439130 None:intergenic 20.0%
!!! ACAAAATCAAATTTTGAAAG+TGG + chr1_2:65439112-65439131 None:intergenic 20.0%
!! TTTATAACGTGTTACATAAA+AGG + chr1_2:65439588-65439607 None:intergenic 20.0%
!!! AAAAAAGTTTTTCCTTTGTT+TGG + chr1_2:65439670-65439689 None:intergenic 20.0%
!!! ACAAAGGAAAAACTTTTTTT+TGG - chr1_2:65439671-65439690 Msa0085370:intron 20.0%
!! AAGTTAGGAAGAAATAAATA+CGG + chr1_2:65440020-65440039 None:intergenic 20.0%
!!! AAAAGTATAAGAAAAATGCA+TGG - chr1_2:65440299-65440318 Msa0085370:intron 20.0%
!! AGTGTGAAAAAAATGTATAT+AGG + chr1_2:65440513-65440532 None:intergenic 20.0%
!!! TTTTTTTAAGAGTGAATGAA+TGG - chr1_2:65440658-65440677 Msa0085370:CDS 20.0%
!!! ATATATTTTTCTTTAAGCAG+GGG - chr1_2:65440698-65440717 Msa0085370:CDS 20.0%
!! TATTATATAAGCCTAAGAAT+TGG - chr1_2:65441208-65441227 Msa0085370:intron 20.0%
!! ATTATATAAGCCTAAGAATT+GGG - chr1_2:65441209-65441228 Msa0085370:intron 20.0%
!! ATAAATAAAACCCAATTCTT+AGG + chr1_2:65441222-65441241 None:intergenic 20.0%
!! ACAAATAAACGAATAAAGTA+AGG + chr1_2:65441505-65441524 None:intergenic 20.0%
!! TTACTTTATTCGTTTATTTG+TGG - chr1_2:65441504-65441523 Msa0085370:intron 20.0%
!!! TATTGCATTTTAAGATAACT+CGG - chr1_2:65441790-65441809 Msa0085370:intron 20.0%
!!! TATTGCATTTTAAGATAACT+CGG - chr1_2:65441790-65441809 Msa0085370:intron 20.0%
!!! TGTAATATTTTTGCTACTTT+TGG - chr1_2:65441876-65441895 Msa0085370:intron 20.0%
!!! GTAATATTTTTGCTACTTTT+GGG - chr1_2:65441877-65441896 Msa0085370:intron 20.0%
!! ATAATAATTGGGTATAGTAT+AGG + chr1_2:65442102-65442121 None:intergenic 20.0%
!!! TAAATAAGAGAAGTACAATT+AGG + chr1_2:65442872-65442891 None:intergenic 20.0%
!!! TTCTTTTGTATGTCTTATTT+TGG - chr1_2:65442933-65442952 Msa0085370:intron 20.0%
!! TATTAAATACCTGGAAAATA+AGG - chr1_2:65443134-65443153 Msa0085370:CDS 20.0%
!!! TTTGAACTTTTTCTATAATG+TGG - chr1_2:65443930-65443949 Msa0085370:intron 20.0%
!!! TTGAACTTTTTCTATAATGT+GGG - chr1_2:65443931-65443950 Msa0085370:intron 20.0%
!! AAATATTTACACATACCAAA+AGG + chr1_2:65444374-65444393 None:intergenic 20.0%
!! ATAAGAACATAAGTTTAGTT+TGG + chr1_2:65444432-65444451 None:intergenic 20.0%
! TAATAGTCATGCAACAAATT+AGG + chr1_2:65439759-65439778 None:intergenic 25.0%
!! AACCTGTTTCATTTTATATG+AGG - chr1_2:65439819-65439838 Msa0085370:intron 25.0%
! TTCCTCATATAAAATGAAAC+AGG + chr1_2:65439824-65439843 None:intergenic 25.0%
! AAAAGCAACACTTATAAGTT+AGG + chr1_2:65440035-65440054 None:intergenic 25.0%
!!! ACTTATAAGTGTTGCTTTTT+TGG - chr1_2:65440036-65440055 Msa0085370:intron 25.0%
!!! CTTATAAGTGTTGCTTTTTT+GGG - chr1_2:65440037-65440056 Msa0085370:intron 25.0%
!! AATAATTTTGTTGAAGAAGC+TGG - chr1_2:65440214-65440233 Msa0085370:intron 25.0%
!!! ACTTTTTTCCCAGTATATAT+AGG - chr1_2:65440238-65440257 Msa0085370:intron 25.0%
! AGTTCATTGATAGAAAAGTT+CGG - chr1_2:65440274-65440293 Msa0085370:intron 25.0%
! GAAATAAACTAACCTTCAAA+TGG + chr1_2:65440439-65440458 None:intergenic 25.0%
!!! TCACAGTTATTTTACATACT+AGG - chr1_2:65440475-65440494 Msa0085370:intron 25.0%
!! AAGCTACTTTGATAGTTAAA+CGG - chr1_2:65440617-65440636 Msa0085370:CDS 25.0%
!! GGTTTTTGACATATACTTTA+AGG + chr1_2:65440788-65440807 None:intergenic 25.0%
! CCTAGATCAATAAAACTATA+GGG + chr1_2:65440860-65440879 None:intergenic 25.0%
! TCCTAGATCAATAAAACTAT+AGG + chr1_2:65440861-65440880 None:intergenic 25.0%
!! AAACATGGACCTTTATTTAT+AGG - chr1_2:65440968-65440987 Msa0085370:intron 25.0%
! TTCAGAATGCCTATAAATAA+AGG + chr1_2:65440980-65440999 None:intergenic 25.0%
!! TCTTTCTGTTATATTTCTGT+TGG + chr1_2:65441055-65441074 None:intergenic 25.0%
! GTTGTAAATAGTTAGTTAGT+TGG + chr1_2:65441082-65441101 None:intergenic 25.0%
! AACTAACTATTTACAACACA+AGG - chr1_2:65441085-65441104 Msa0085370:intron 25.0%
! AGCCTAAGAATATCATAAAT+CGG + chr1_2:65441314-65441333 None:intergenic 25.0%
! TTTCTCTTTGACATTCTTAT+TGG + chr1_2:65441400-65441419 None:intergenic 25.0%
!!! AAGCTCTTTTTTTTAGTGTT+CGG - chr1_2:65441989-65442008 Msa0085370:intron 25.0%
!!! TCAAAAAGCAGATGATTTTT+TGG - chr1_2:65442513-65442532 Msa0085370:intron 25.0%
! AAAACAAAATCTCATTCCTT+TGG - chr1_2:65442546-65442565 Msa0085370:intron 25.0%
!!! GAAAATAGTTTTGACTATTG+TGG - chr1_2:65442618-65442637 Msa0085370:intron 25.0%
! CAATAACTTAACAAGTTCTT+TGG + chr1_2:65442665-65442684 None:intergenic 25.0%
!!! AAGAACTTGTTAAGTTATTG+AGG - chr1_2:65442665-65442684 Msa0085370:intron 25.0%
!!! AGAACTTGTTAAGTTATTGA+GGG - chr1_2:65442666-65442685 Msa0085370:intron 25.0%
! GACTTAATATTTGGTTATGT+TGG - chr1_2:65442709-65442728 Msa0085370:intron 25.0%
! TACTACTAAACTACCAAAAA+TGG - chr1_2:65442771-65442790 Msa0085370:intron 25.0%
! TAAAGAAGATGAGTATCTTT+CGG - chr1_2:65442804-65442823 Msa0085370:intron 25.0%
!! AGAGGGAAAAATTTGAAATT+AGG + chr1_2:65442899-65442918 None:intergenic 25.0%
! GAAATGTATCAGAATAAAGA+GGG + chr1_2:65442916-65442935 None:intergenic 25.0%
! AGAAATGTATCAGAATAAAG+AGG + chr1_2:65442917-65442936 None:intergenic 25.0%
! ATATACTTCTCTTTGTAACA+TGG + chr1_2:65443532-65443551 None:intergenic 25.0%
!! ACAAAGTTTTTGTCAAATAG+TGG + chr1_2:65443657-65443676 None:intergenic 25.0%
!!! ACATTAATTTTTCAGGTAGT+TGG - chr1_2:65443972-65443991 Msa0085370:intron 25.0%
!! CAAATCACTAAATTTCTAGA+AGG - chr1_2:65444029-65444048 Msa0085370:intron 25.0%
! TTAATGCTTATTCAAACCTT+AGG - chr1_2:65444167-65444186 Msa0085370:intron 25.0%
!!! TTAGTTATTTCTTGACATGA+AGG - chr1_2:65444465-65444484 Msa0085370:CDS 25.0%
! CTTATTTATTACTTTCAACG+TGG - chr1_2:65444488-65444507 Msa0085370:CDS 25.0%
AGGTATATCTCTACTCTTAT+GGG - chr1_2:65439056-65439075 Msa0085370:three_prime_UTR 30.0%
TATGCATGCATCAAACATAA+TGG - chr1_2:65439306-65439325 Msa0085370:CDS 30.0%
!! TCAAACATAATGGACATCTT+TGG - chr1_2:65439316-65439335 Msa0085370:CDS 30.0%
AAGTTCAATCTAAGAAGAAC+AGG + chr1_2:65439402-65439421 None:intergenic 30.0%
!! TCTACTTTTGCAATGAGTAT+AGG + chr1_2:65439912-65439931 None:intergenic 30.0%
! GATGTTGAGTATGTTTTCTT+TGG - chr1_2:65439966-65439985 Msa0085370:intron 30.0%
TGATTAAACAGCAAAATGGT+TGG + chr1_2:65440085-65440104 None:intergenic 30.0%
!!! ACCATTTTGCTGTTTAATCA+TGG - chr1_2:65440085-65440104 Msa0085370:intron 30.0%
!!! CCATTTTGCTGTTTAATCAT+GGG - chr1_2:65440086-65440105 Msa0085370:intron 30.0%
!!! CATTTTGCTGTTTAATCATG+GGG - chr1_2:65440087-65440106 Msa0085370:intron 30.0%
! TTCCCAGTATATATAGGTTT+TGG - chr1_2:65440244-65440263 Msa0085370:intron 30.0%
! TCCCAGTATATATAGGTTTT+GGG - chr1_2:65440245-65440264 Msa0085370:intron 30.0%
ACCCAAAACCTATATATACT+GGG + chr1_2:65440249-65440268 None:intergenic 30.0%
AACCCAAAACCTATATATAC+TGG + chr1_2:65440250-65440269 None:intergenic 30.0%
!!! AGTATATATAGGTTTTGGGT+TGG - chr1_2:65440249-65440268 Msa0085370:intron 30.0%
! AATGAGCGTAACACATTTTA+TGG - chr1_2:65440412-65440431 Msa0085370:intron 30.0%
! ACATTTTATGGTCCATTTGA+AGG - chr1_2:65440424-65440443 Msa0085370:intron 30.0%
!! GAGTTGATTTTGTCATATCT+AGG - chr1_2:65440536-65440555 Msa0085370:intron 30.0%
TCTAGGAAATAAATATGTGC+TGG - chr1_2:65440553-65440572 Msa0085370:intron 30.0%
! AATAAATATGTGCTGGCATA+TGG - chr1_2:65440560-65440579 Msa0085370:intron 30.0%
TATGTCAAAAACCAGTTGTT+AGG - chr1_2:65440795-65440814 Msa0085370:CDS 30.0%
!!! CCCTATAGTTTTATTGATCT+AGG - chr1_2:65440857-65440876 Msa0085370:intron 30.0%
AAATCCTGCACTACTTAAAT+AGG - chr1_2:65440998-65441017 Msa0085370:intron 30.0%
AATCCTGCACTACTTAAATA+GGG - chr1_2:65440999-65441018 Msa0085370:intron 30.0%
!! TGCCGATTTATGATATTCTT+AGG - chr1_2:65441309-65441328 Msa0085370:intron 30.0%
CTTAACTTCATTCCAAAGAT+GGG - chr1_2:65441332-65441351 Msa0085370:intron 30.0%
TTAACTTCATTCCAAAGATG+GGG - chr1_2:65441333-65441352 Msa0085370:intron 30.0%
TCATAAACGCTATATCTACT+AGG - chr1_2:65441423-65441442 Msa0085370:intron 30.0%
ATTTGTGGAACCTTATATAC+TGG - chr1_2:65441519-65441538 Msa0085370:intron 30.0%
TTTGTGGAACCTTATATACT+GGG - chr1_2:65441520-65441539 Msa0085370:intron 30.0%
! TCTTTCTGAAAGTTTAGGTT+AGG - chr1_2:65441709-65441728 Msa0085370:intron 30.0%
!!! TTTTTCTTTTTGGTTTTCCC+TGG - chr1_2:65441740-65441759 Msa0085370:intron 30.0%
! TAGTTCACTATCCAGATTTT+AGG - chr1_2:65441935-65441954 Msa0085370:intron 30.0%
! CTTTTACTTCTCCTAAAATC+TGG + chr1_2:65441949-65441968 None:intergenic 30.0%
TAGGAGAAGTAAAAGTTGTA+AGG - chr1_2:65441954-65441973 Msa0085370:intron 30.0%
GTAAAAGTTGTAAGGCTTTA+TGG - chr1_2:65441962-65441981 Msa0085370:intron 30.0%
GAACACTAAAAAAAAGAGCT+TGG + chr1_2:65441990-65442009 None:intergenic 30.0%
CTCTAACCTTAACATACAAT+AGG - chr1_2:65442176-65442195 Msa0085370:intron 30.0%
! TTGAAAGGATTTTCTTGTCA+GGG - chr1_2:65442204-65442223 Msa0085370:intron 30.0%
TAGGAATTGAAGTAGATTTG+AGG - chr1_2:65442227-65442246 Msa0085370:intron 30.0%
GCAAATCGTGACTTAATATT+TGG - chr1_2:65442700-65442719 Msa0085370:intron 30.0%
AACTACCAAAAATGGTCATT+TGG - chr1_2:65442779-65442798 Msa0085370:intron 30.0%
ACTACCAAAAATGGTCATTT+GGG - chr1_2:65442780-65442799 Msa0085370:intron 30.0%
! TTATCCCAAATGACCATTTT+TGG + chr1_2:65442787-65442806 None:intergenic 30.0%
CTTATCTATATGTCTATGCT+TGG - chr1_2:65442962-65442981 Msa0085370:CDS 30.0%
AACACCTTAGAAAAGTTAGA+TGG + chr1_2:65443038-65443057 None:intergenic 30.0%
ATACCTTGGTATTAAATACC+TGG - chr1_2:65443125-65443144 Msa0085370:CDS 30.0%
TTTCCAGGTATTTAATACCA+AGG + chr1_2:65443131-65443150 None:intergenic 30.0%
! GCTGTTAGTAAAATTCGTTT+TGG - chr1_2:65443181-65443200 Msa0085370:CDS 30.0%
!! ATTCGTTTTGGTACATAACT+AGG - chr1_2:65443193-65443212 Msa0085370:CDS 30.0%
!! TAACTAGGAAACTCTAGAAT+AGG - chr1_2:65443208-65443227 Msa0085370:CDS 30.0%
!!! GAAACTCTAGAATAGGATTT+TGG - chr1_2:65443215-65443234 Msa0085370:CDS 30.0%
! AAACATTGGTATCTGAAGTT+CGG - chr1_2:65443277-65443296 Msa0085370:CDS 30.0%
ACCATGTAACTATCCTATAT+AGG - chr1_2:65443426-65443445 Msa0085370:CDS 30.0%
AACTATCACTTGTCACAAAT+AGG + chr1_2:65443801-65443820 None:intergenic 30.0%
ACCATAAAGAACTCATTTAG+TGG - chr1_2:65444068-65444087 Msa0085370:intron 30.0%
CCATAAAGAACTCATTTAGT+GGG - chr1_2:65444069-65444088 Msa0085370:intron 30.0%
TTCTAATGTCGAAAGATCTA+TGG + chr1_2:65444115-65444134 None:intergenic 30.0%
TAGATCTTTCGACATTAGAA+TGG - chr1_2:65444115-65444134 Msa0085370:intron 30.0%
ATTCAAACCTTAGGTAGTAA+AGG - chr1_2:65444176-65444195 Msa0085370:intron 30.0%
! TGATTAACCTTTTCTTGGTT+TGG + chr1_2:65444227-65444246 None:intergenic 30.0%
! TTGGTTGATTAACCTTTTCT+TGG + chr1_2:65444232-65444251 None:intergenic 30.0%
! GGAAGAAAAGAGTATAAAGA+AGG - chr1_2:65444272-65444291 Msa0085370:intron 30.0%
GATCATCACTTAATTATAGC+TGG - chr1_2:65444332-65444351 Msa0085370:CDS 30.0%
!! TTTAGAATTACCATGCCTTT+TGG - chr1_2:65444356-65444375 Msa0085370:CDS 30.0%
!! AACATAAGTTTAGTTTGGAC+AGG + chr1_2:65444427-65444446 None:intergenic 30.0%
TAAGAGTAGAGATATACCTC+AGG + chr1_2:65439055-65439074 None:intergenic 35.0%
GAGGTATATCTCTACTCTTA+TGG - chr1_2:65439055-65439074 Msa0085370:three_prime_UTR 35.0%
TGTCCATGTTGTATCAATGT+TGG - chr1_2:65439193-65439212 Msa0085370:CDS 35.0%
TGTCCAACATTGATACAACA+TGG + chr1_2:65439199-65439218 None:intergenic 35.0%
!! AACATAATGGACATCTTTGG+TGG - chr1_2:65439319-65439338 Msa0085370:CDS 35.0%
TGTTTGGACAATCCTTGAAA+TGG + chr1_2:65439654-65439673 None:intergenic 35.0%
TTCAAGGATTGTCCAAACAA+AGG - chr1_2:65439655-65439674 Msa0085370:intron 35.0%
AGTCACAAGAATCTCTTATC+AGG + chr1_2:65439795-65439814 None:intergenic 35.0%
TTCTGTCTTACAGTTAGATG+CGG - chr1_2:65439857-65439876 Msa0085370:intron 35.0%
AATGAGTATAGGTTCCTTCA+AGG + chr1_2:65439901-65439920 None:intergenic 35.0%
AAACAGCAAAATGGTTGGAT+AGG + chr1_2:65440080-65440099 None:intergenic 35.0%
CCCATGATTAAACAGCAAAA+TGG + chr1_2:65440089-65440108 None:intergenic 35.0%
ACAAGTAAATCAGCTTTCCT+TGG + chr1_2:65440133-65440152 None:intergenic 35.0%
! GAAAAATGCATGGTTTTCTG+TGG - chr1_2:65440309-65440328 Msa0085370:intron 35.0%
!! CTCATTGTACAGTGGATTAA+GGG + chr1_2:65440398-65440417 None:intergenic 35.0%
GAGCTTCATACAATGGAATA+TGG + chr1_2:65440735-65440754 None:intergenic 35.0%
CCAAAATGAGCTTCATACAA+TGG + chr1_2:65440742-65440761 None:intergenic 35.0%
! CCATTGTATGAAGCTCATTT+TGG - chr1_2:65440739-65440758 Msa0085370:CDS 35.0%
! AACCAGTTGTTAGGTTCTTT+TGG - chr1_2:65440804-65440823 Msa0085370:CDS 35.0%
TTCCAAAAGAACCTAACAAC+TGG + chr1_2:65440809-65440828 None:intergenic 35.0%
AGGAAAAGAAAGATAGACAG+AGG - chr1_2:65440877-65440896 Msa0085370:intron 35.0%
!!! GCTTTTGGTTAGTTTTTGAC+TGG + chr1_2:65440930-65440949 None:intergenic 35.0%
!! GTAGATGGTATCTTAGCTTT+TGG + chr1_2:65440945-65440964 None:intergenic 35.0%
GATACCATCTACAGAAAACA+TGG - chr1_2:65440953-65440972 Msa0085370:intron 35.0%
! GTTAGTTCTTATTCCTTCGA+TGG - chr1_2:65441111-65441130 Msa0085370:intron 35.0%
! CTTTGTTAGTTTACCATCGA+AGG + chr1_2:65441127-65441146 None:intergenic 35.0%
CTTCGATGGTAAACTAACAA+AGG - chr1_2:65441125-65441144 Msa0085370:intron 35.0%
ACTTAACATGTAAGGAGAGT+AGG + chr1_2:65441188-65441207 None:intergenic 35.0%
GCTTAACTTCATTCCAAAGA+TGG - chr1_2:65441331-65441350 Msa0085370:intron 35.0%
GCAATGCACAAATCAATCTT+GGG + chr1_2:65441455-65441474 None:intergenic 35.0%
AGCAATGCACAAATCAATCT+TGG + chr1_2:65441456-65441475 None:intergenic 35.0%
! CTGGTTCTTTCTGAAAGTTT+AGG - chr1_2:65441704-65441723 Msa0085370:intron 35.0%
! TCATGAGAACAAGTTTTCCA+GGG + chr1_2:65441760-65441779 None:intergenic 35.0%
! TTCATGAGAACAAGTTTTCC+AGG + chr1_2:65441761-65441780 None:intergenic 35.0%
GCAGAAGAACTGTTAAACAA+GGG - chr1_2:65442034-65442053 Msa0085370:intron 35.0%
!! GTTTCTTTAGGAGGTCTTTT+TGG - chr1_2:65442076-65442095 Msa0085370:intron 35.0%
TAGAGTATGACAATGTTACC+TGG - chr1_2:65442135-65442154 Msa0085370:intron 35.0%
AGTCGACCTATTGTATGTTA+AGG + chr1_2:65442185-65442204 None:intergenic 35.0%
!! ATACAATAGGTCGACTTGAA+AGG - chr1_2:65442189-65442208 Msa0085370:intron 35.0%
! CTTGAAAGGATTTTCTTGTC+AGG - chr1_2:65442203-65442222 Msa0085370:intron 35.0%
!! GAATGTCTTTGTTTCTGTAC+TGG - chr1_2:65442313-65442332 Msa0085370:intron 35.0%
CTACTTGCATTATGTTATGC+TGG - chr1_2:65442401-65442420 Msa0085370:intron 35.0%
TTAAGTGTCTCATAGGATAC+AGG + chr1_2:65442577-65442596 None:intergenic 35.0%
CATCAACTTAAGTGTCTCAT+AGG + chr1_2:65442584-65442603 None:intergenic 35.0%
!! CTTAAGTTGATGAAAGCTGA+TGG - chr1_2:65442592-65442611 Msa0085370:intron 35.0%
TTATGTTGGAGTTAAACAGC+TGG - chr1_2:65442723-65442742 Msa0085370:intron 35.0%
! CATGCCATCTAACTTTTCTA+AGG - chr1_2:65443031-65443050 Msa0085370:CDS 35.0%
CGTTGCTAAATTATGCAACA+AGG + chr1_2:65443067-65443086 None:intergenic 35.0%
! AGTGAGAATTTGAGATACCT+TGG - chr1_2:65443111-65443130 Msa0085370:CDS 35.0%
CTATACCAATAGTAGTTCAC+AGG + chr1_2:65443162-65443181 None:intergenic 35.0%
CAAGAAATCACACATTCTCT+TGG - chr1_2:65443242-65443261 Msa0085370:CDS 35.0%
! ATACCAATGTTTGGAATCCT+AGG + chr1_2:65443269-65443288 None:intergenic 35.0%
GAACTTCAGATACCAATGTT+TGG + chr1_2:65443278-65443297 None:intergenic 35.0%
! AACATTGGTATCTGAAGTTC+GGG - chr1_2:65443278-65443297 Msa0085370:CDS 35.0%
!! ATGCAATTGATGATGATCGA+AGG + chr1_2:65443379-65443398 None:intergenic 35.0%
AGGATAGTTACATGGTTAAC+AGG + chr1_2:65443422-65443441 None:intergenic 35.0%
GCCTATATAGGATAGTTACA+TGG + chr1_2:65443430-65443449 None:intergenic 35.0%
TCAAAGTGAAGAGCCTATAT+AGG + chr1_2:65443442-65443461 None:intergenic 35.0%
TATATAGGCTCTTCACTTTG+AGG - chr1_2:65443441-65443460 Msa0085370:CDS 35.0%
TACTTCTCTTTGTAACATGG+TGG + chr1_2:65443529-65443548 None:intergenic 35.0%
! GTGTTTTCAATCACAGATAG+TGG - chr1_2:65443572-65443591 Msa0085370:intron 35.0%
ATTTGTGTTAGCATGATAGC+AGG + chr1_2:65443859-65443878 None:intergenic 35.0%
! TTTCTAGAAGGATACAGAGA+AGG - chr1_2:65444041-65444060 Msa0085370:intron 35.0%
CCCACTAAATGAGTTCTTTA+TGG + chr1_2:65444072-65444091 None:intergenic 35.0%
TGGATAAATTGCATCAGTGA+TGG + chr1_2:65444095-65444114 None:intergenic 35.0%
ATCATCTCCTTTACTACCTA+AGG + chr1_2:65444186-65444205 None:intergenic 35.0%
TTAGGTAGTAAAGGAGATGA+TGG - chr1_2:65444185-65444204 Msa0085370:intron 35.0%
TTTACACATACCAAAAGGCA+TGG + chr1_2:65444369-65444388 None:intergenic 35.0%
!! TGGCATTGATGAAATGAAAG+TGG - chr1_2:65444508-65444527 Msa0085370:exon 35.0%
TTGTCGTGCTGAACCATTAT+CGG - chr1_2:65438913-65438932 Msa0085370:three_prime_UTR 40.0%
!! ACCATTATCGGTTGATGGAA+AGG - chr1_2:65438925-65438944 Msa0085370:three_prime_UTR 40.0%
ACCTTTCCATCAACCGATAA+TGG + chr1_2:65438929-65438948 None:intergenic 40.0%
GATGTGATCGAAGGATGAAA+TGG + chr1_2:65438984-65439003 None:intergenic 40.0%
TTCATCCTTCGATCACATCT+TGG - chr1_2:65438985-65439004 Msa0085370:three_prime_UTR 40.0%
ATCAACCAAGATGTGATCGA+AGG + chr1_2:65438993-65439012 None:intergenic 40.0%
AGTGTGAGTGCTACAAAGAT+TGG - chr1_2:65439257-65439276 Msa0085370:CDS 40.0%
!! AAGATTGGTGATGCACTTCT+AGG - chr1_2:65439272-65439291 Msa0085370:CDS 40.0%
! AATGGACATCTTTGGTGGTT+TGG - chr1_2:65439324-65439343 Msa0085370:CDS 40.0%
ACATGTTGGAGACCATTTCA+AGG - chr1_2:65439639-65439658 Msa0085370:intron 40.0%
AATTAGGATTATGCGTGTCG+CGG + chr1_2:65439743-65439762 None:intergenic 40.0%
! CAACATCGTGTTTTCTTGCA+AGG + chr1_2:65439953-65439972 None:intergenic 40.0%
AGCAGAATCTGAATCGAGAA+TGG + chr1_2:65440191-65440210 None:intergenic 40.0%
!! TGTGGCAAAGGATTTTTCAG+AGG - chr1_2:65440327-65440346 Msa0085370:intron 40.0%
!! GGATTTTTCAGAGGATCTCA+TGG - chr1_2:65440336-65440355 Msa0085370:intron 40.0%
!! GCTCATTGTACAGTGGATTA+AGG + chr1_2:65440399-65440418 None:intergenic 40.0%
TCTTTAAGCAGGGGCTTATT+AGG - chr1_2:65440707-65440726 Msa0085370:CDS 40.0%
CTTTAAGCAGGGGCTTATTA+GGG - chr1_2:65440708-65440727 Msa0085370:CDS 40.0%
!! AGGTTCTTTTGGAAGAACAC+AGG - chr1_2:65440815-65440834 Msa0085370:CDS 40.0%
TTGGAAGAACACAGGTAGAA+AGG - chr1_2:65440823-65440842 Msa0085370:CDS 40.0%
TGGAAGAACACAGGTAGAAA+GGG - chr1_2:65440824-65440843 Msa0085370:CDS 40.0%
ACTGGAAAATTCCAGTGTGA+GGG + chr1_2:65440912-65440931 None:intergenic 40.0%
! AGGTCCATGTTTTCTGTAGA+TGG + chr1_2:65440960-65440979 None:intergenic 40.0%
TGTCCCTATTTAAGTAGTGC+AGG + chr1_2:65441005-65441024 None:intergenic 40.0%
! TCTGTTGGCTGTTACTTGTT+AGG + chr1_2:65441040-65441059 None:intergenic 40.0%
GGGAATGTTAATGATGTGCA+AGG + chr1_2:65441161-65441180 None:intergenic 40.0%
ATGTAAGGAGAGTAGGTGTT+GGG + chr1_2:65441181-65441200 None:intergenic 40.0%
GAGACACTTCCCAGTATATA+AGG + chr1_2:65441532-65441551 None:intergenic 40.0%
!!! GGCTGCTGCTTTTTTCTTTT+TGG - chr1_2:65441730-65441749 Msa0085370:intron 40.0%
GGCAGAAGAACTGTTAAACA+AGG - chr1_2:65442033-65442052 Msa0085370:intron 40.0%
TTCCAGCTCTTGGTTTCTTT+AGG - chr1_2:65442064-65442083 Msa0085370:intron 40.0%
! AAGGATTTTCTTGTCAGGGT+AGG - chr1_2:65442208-65442227 Msa0085370:intron 40.0%
CAGATAAGCTCACAACATCT+TGG + chr1_2:65442344-65442363 None:intergenic 40.0%
!! AGTTGATGAAAGCTGATGGT+AGG - chr1_2:65442596-65442615 Msa0085370:intron 40.0%
TGAGTATCTTTCGGTAAGTC+TGG - chr1_2:65442813-65442832 Msa0085370:intron 40.0%
!! CTTGGTTACTTTGAGATGAG+TGG - chr1_2:65442980-65442999 Msa0085370:CDS 40.0%
AGTTAGATGGCATGAATGTC+AGG + chr1_2:65443025-65443044 None:intergenic 40.0%
AATTTAGCAACGTGCGTGAA+TGG - chr1_2:65443075-65443094 Msa0085370:CDS 40.0%
! ACATTGGTATCTGAAGTTCG+GGG - chr1_2:65443279-65443298 Msa0085370:CDS 40.0%
GTAACATGGTGGTCAATAGA+GGG + chr1_2:65443518-65443537 None:intergenic 40.0%
TGTAACATGGTGGTCAATAG+AGG + chr1_2:65443519-65443538 None:intergenic 40.0%
ATAACGCTACTGTAGCAAAG+TGG + chr1_2:65443722-65443741 None:intergenic 40.0%
!! GTTGGTTCAGAAAGCATTGA+AGG - chr1_2:65443990-65444009 Msa0085370:intron 40.0%
!! TTCAGAAAGCATTGAAGGAG+AGG - chr1_2:65443995-65444014 Msa0085370:intron 40.0%
!! GAGAGTACCAAACCAAGAAA+AGG - chr1_2:65444217-65444236 Msa0085370:intron 40.0%
ATGGTTCAGCACGACAAAAG+TGG + chr1_2:65438910-65438929 None:intergenic 45.0%
! GCTGAACCATTATCGGTTGA+TGG - chr1_2:65438920-65438939 Msa0085370:three_prime_UTR 45.0%
! TGAAATGGCGGAATCGAAGT+TGG + chr1_2:65438969-65438988 None:intergenic 45.0%
GTGATCGAAGGATGAAATGG+CGG + chr1_2:65438981-65439000 None:intergenic 45.0%
! TGGTTGATTTCTACGCTCCT+TGG - chr1_2:65439005-65439024 Msa0085370:three_prime_UTR 45.0%
GCACTCACACTTCTGATCAA+GGG + chr1_2:65439248-65439267 None:intergenic 45.0%
AGCACTCACACTTCTGATCA+AGG + chr1_2:65439249-65439268 None:intergenic 45.0%
CGTATGAGTGTCACACATGT+TGG - chr1_2:65439625-65439644 Msa0085370:intron 45.0%
GACACTCATGTGACACATGT+CGG + chr1_2:65439715-65439734 None:intergenic 45.0%
GACATGTGTCACATGAGTGT+CGG - chr1_2:65439714-65439733 Msa0085370:intron 45.0%
ATTAGGATTATGCGTGTCGC+GGG + chr1_2:65439742-65439761 None:intergenic 45.0%
TGTCTTACAGTTAGATGCGG+CGG - chr1_2:65439860-65439879 Msa0085370:intron 45.0%
TTGGTCCGCGATATTCAGTT+GGG + chr1_2:65440114-65440133 None:intergenic 45.0%
! TGCATGGTTTTCTGTGGCAA+AGG - chr1_2:65440315-65440334 Msa0085370:intron 45.0%
CTTCGATAAGATTCCTGCCT+TGG - chr1_2:65440369-65440388 Msa0085370:intron 45.0%
!! CAGTGGATTAAGGGAAACCA+AGG + chr1_2:65440389-65440408 None:intergenic 45.0%
GTGTTACGCTCATTGTACAG+TGG + chr1_2:65440406-65440425 None:intergenic 45.0%
GACTGGAAAATTCCAGTGTG+AGG + chr1_2:65440913-65440932 None:intergenic 45.0%
! TTGGCTGTTACTTGTTAGGC+TGG + chr1_2:65441036-65441055 None:intergenic 45.0%
CATGTAAGGAGAGTAGGTGT+TGG + chr1_2:65441182-65441201 None:intergenic 45.0%
CTCTTCTACATGGTCCCTTT+GGG - chr1_2:65441252-65441271 Msa0085370:intron 45.0%
TCCAAAGATGGGGTTGACAT+TGG - chr1_2:65441343-65441362 Msa0085370:intron 45.0%
ACCAATGTCAACCCCATCTT+TGG + chr1_2:65441347-65441366 None:intergenic 45.0%
TGGTTAAACTCCCAACCACT+TGG - chr1_2:65441363-65441382 Msa0085370:intron 45.0%
! TACCAGCAAAAGTGTAGTGC+AGG + chr1_2:65441665-65441684 None:intergenic 45.0%
! TGCACTACACTTTTGCTGGT+AGG - chr1_2:65441664-65441683 Msa0085370:intron 45.0%
! AACCAGCAAGAGTGTAGTTC+AGG + chr1_2:65441690-65441709 None:intergenic 45.0%
! TTTGGGTTTGTCACTGTGTC+TGG - chr1_2:65441894-65441913 Msa0085370:intron 45.0%
!! TTCGGTGCATTTTGCTTGAC+TGG - chr1_2:65442007-65442026 Msa0085370:intron 45.0%
! TGCATTTTGCTTGACTGGAG+TGG - chr1_2:65442012-65442031 Msa0085370:intron 45.0%
! GGGTCTTTATTTCCAGCTCT+TGG - chr1_2:65442054-65442073 Msa0085370:intron 45.0%
CTCCTAAAGAAACCAAGAGC+TGG + chr1_2:65442069-65442088 None:intergenic 45.0%
CAGCTCTTGGTTTCTTTAGG+AGG - chr1_2:65442067-65442086 Msa0085370:intron 45.0%
TTCAGCTTCAGTTACGTTCC+AGG + chr1_2:65442156-65442175 None:intergenic 45.0%
!! GGTTACTTTGAGATGAGTGG+TGG - chr1_2:65442983-65443002 Msa0085370:CDS 45.0%
!!! TCACAGGCTCCTTATTTTCC+AGG + chr1_2:65443146-65443165 None:intergenic 45.0%
AGGAGCCTGTGAACTACTAT+TGG - chr1_2:65443154-65443173 Msa0085370:CDS 45.0%
TCACACATTCTCTTGGTCCT+AGG - chr1_2:65443249-65443268 Msa0085370:CDS 45.0%
GGTCCTAGGATTCCAAACAT+TGG - chr1_2:65443263-65443282 Msa0085370:CDS 45.0%
TATATCCTCGCCAATTGGTG+AGG + chr1_2:65443307-65443326 None:intergenic 45.0%
GCTCATATATCCTCGCCAAT+TGG + chr1_2:65443312-65443331 None:intergenic 45.0%
! AGTGCTGCTATAGCTGCTAT+TGG - chr1_2:65443742-65443761 Msa0085370:intron 45.0%
TAGCTGCTATTGGACAACAC+TGG - chr1_2:65443752-65443771 Msa0085370:intron 45.0%
!! AAGCATTGAAGGAGAGGATC+AGG - chr1_2:65444001-65444020 Msa0085370:intron 45.0%
! AGCATTGAAGGAGAGGATCA+GGG - chr1_2:65444002-65444021 Msa0085370:intron 45.0%
! CTCTTTTCTTCCACCTTCTG+AGG + chr1_2:65444264-65444283 None:intergenic 45.0%
GATTTCTACGCTCCTTGGTG+TGG - chr1_2:65439010-65439029 Msa0085370:three_prime_UTR 50.0%
TTAGGATTATGCGTGTCGCG+GGG + chr1_2:65439741-65439760 None:intergenic 50.0%
TCCTTCAAGGCTGCAAGTAC+AGG + chr1_2:65439888-65439907 None:intergenic 50.0%
CTTGGTCCGCGATATTCAGT+TGG + chr1_2:65440115-65440134 None:intergenic 50.0%
CAACTGAATATCGCGGACCA+AGG - chr1_2:65440113-65440132 Msa0085370:intron 50.0%
GGATTAAGGGAAACCAAGGC+AGG + chr1_2:65440385-65440404 None:intergenic 50.0%
AAGGGACCATGTAGAAGAGG+CGG + chr1_2:65441251-65441270 None:intergenic 50.0%
CCAAAGGGACCATGTAGAAG+AGG + chr1_2:65441254-65441273 None:intergenic 50.0%
CCTCTTCTACATGGTCCCTT+TGG - chr1_2:65441251-65441270 Msa0085370:intron 50.0%
TTCTACATGGTCCCTTTGGG+CGG - chr1_2:65441255-65441274 Msa0085370:intron 50.0%
TATGCTTGAAGCCGCCCAAA+GGG + chr1_2:65441269-65441288 None:intergenic 50.0%
AGGCCTACAGTCTTGCTTGT+GGG + chr1_2:65441645-65441664 None:intergenic 50.0%
TAGGATACAGGCACAGCCAA+AGG + chr1_2:65442565-65442584 None:intergenic 50.0%
!! TGCGTGAATGGTGTCATGAG+TGG - chr1_2:65443087-65443106 Msa0085370:CDS 50.0%
TGTTGGACACCGACACGTGT+TGG - chr1_2:65439210-65439229 Msa0085370:CDS 55.0%
ACACCGACACGTGTTGGACA+CGG - chr1_2:65439216-65439235 Msa0085370:CDS 55.0%
GCCTGTACTTGCAGCCTTGA+AGG - chr1_2:65439884-65439903 Msa0085370:intron 55.0%
GGGGTCCCAACTGAATATCG+CGG - chr1_2:65440106-65440125 Msa0085370:intron 55.0%
GGAAGCTACTTCCCTCACAC+TGG - chr1_2:65440898-65440917 Msa0085370:intron 55.0%
CTATGCTTGAAGCCGCCCAA+AGG + chr1_2:65441270-65441289 None:intergenic 55.0%
TCCCAACCACTTGGTCGAAG+AGG - chr1_2:65441372-65441391 Msa0085370:intron 55.0%
GCCTCTTCGACCAAGTGGTT+GGG + chr1_2:65441376-65441395 None:intergenic 55.0%
ACCCCCACAAGCAAGACTGT+AGG - chr1_2:65441639-65441658 Msa0085370:intron 55.0%
GCCTACAGTCTTGCTTGTGG+GGG + chr1_2:65441643-65441662 None:intergenic 55.0%
GGCCTACAGTCTTGCTTGTG+GGG + chr1_2:65441644-65441663 None:intergenic 55.0%
CAGGCCTACAGTCTTGCTTG+TGG + chr1_2:65441646-65441665 None:intergenic 55.0%
! GGCCTGCACTACACTTTTGC+TGG - chr1_2:65441660-65441679 Msa0085370:intron 55.0%
GGCCTGAACTACACTCTTGC+TGG - chr1_2:65441685-65441704 Msa0085370:intron 55.0%
!! CCTTCTGAGGTAGAGCTGCT+TGG + chr1_2:65444251-65444270 None:intergenic 55.0%
CCAAGCAGCTCTACCTCAGA+AGG - chr1_2:65444248-65444267 Msa0085370:intron 55.0%
AGCAGCTCTACCTCAGAAGG+TGG - chr1_2:65444251-65444270 Msa0085370:intron 55.0%
CGCTTGCAGTGACCACACCA+AGG + chr1_2:65439025-65439044 None:intergenic 60.0%
CTGCAAGCGTCTCTCTCCTG+AGG - chr1_2:65439036-65439055 Msa0085370:three_prime_UTR 60.0%
CACCGACACGTGTTGGACAC+GGG - chr1_2:65439217-65439236 Msa0085370:CDS 60.0%
GTCCCGTGTCCAACACGTGT+CGG + chr1_2:65439222-65439241 None:intergenic 60.0%
CCATGTAGAAGAGGCGGTGC+TGG + chr1_2:65441245-65441264 None:intergenic 60.0%
CCAGCACCGCCTCTTCTACA+TGG - chr1_2:65441242-65441261 Msa0085370:intron 60.0%
CGCCTCTTCGACCAAGTGGT+TGG + chr1_2:65441377-65441396 None:intergenic 60.0%
TTGGCGCCTCTTCGACCAAG+TGG + chr1_2:65441381-65441400 None:intergenic 60.0%
! GTTCGGGGCACCTCACCAAT+TGG - chr1_2:65443294-65443313 Msa0085370:CDS 60.0%
GGGCACCTCACCAATTGGCG+AGG - chr1_2:65443299-65443318 Msa0085370:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 65438843 65444545 65438843 ID=Msa0085370;Name=Msa0085370
chr1_2 mRNA 65438843 65444545 65438843 ID=Msa0085370-mRNA-1;Parent=Msa0085370;Name=Msa0085370-mRNA-1;_AED=0.07;_eAED=0.07;_QI=23|1|1|1|1|1|5|235|430
chr1_2 exon 65438843 65439401 65438843 ID=Msa0085370-mRNA-1:exon:22094;Parent=Msa0085370-mRNA-1
chr1_2 exon 65440563 65440864 65440563 ID=Msa0085370-mRNA-1:exon:22093;Parent=Msa0085370-mRNA-1
chr1_2 exon 65442943 65443313 65442943 ID=Msa0085370-mRNA-1:exon:22092;Parent=Msa0085370-mRNA-1
chr1_2 exon 65443415 65443518 65443415 ID=Msa0085370-mRNA-1:exon:22091;Parent=Msa0085370-mRNA-1
chr1_2 exon 65444331 65444545 65444331 ID=Msa0085370-mRNA-1:exon:22090;Parent=Msa0085370-mRNA-1
chr1_2 five_prime_UTR 65444523 65444545 65444523 ID=Msa0085370-mRNA-1:five_prime_utr;Parent=Msa0085370-mRNA-1
chr1_2 CDS 65444331 65444522 65444331 ID=Msa0085370-mRNA-1:cds;Parent=Msa0085370-mRNA-1
chr1_2 CDS 65443415 65443518 65443415 ID=Msa0085370-mRNA-1:cds;Parent=Msa0085370-mRNA-1
chr1_2 CDS 65442943 65443313 65442943 ID=Msa0085370-mRNA-1:cds;Parent=Msa0085370-mRNA-1
chr1_2 CDS 65440563 65440864 65440563 ID=Msa0085370-mRNA-1:cds;Parent=Msa0085370-mRNA-1
chr1_2 CDS 65439078 65439401 65439078 ID=Msa0085370-mRNA-1:cds;Parent=Msa0085370-mRNA-1
chr1_2 three_prime_UTR 65438843 65439077 65438843 ID=Msa0085370-mRNA-1:three_prime_utr;Parent=Msa0085370-mRNA-1
Gene Sequence

>Msa0085370

ATGAAGATTTGCTTTGTTATTTTTTGTATTGTTTCATCGATCCACTTTTGTCGTGCTGAACCATTATCGGTTGATGGAAAGGTATTGATACTCGATGAATCCAACTTCGATTCCGCCATTTCATCCTTCGATCACATCTTGGTTGATTTCTACGCTCCTTGGTGTGGTCACTGCAAGCGTCTCTCTCCTGAGTTAGATGCGGCGGCGCCTGTACTTGCAGCCTTGAAGGAACCTATACTCATTGCAAAAGTAGATGCAGACAAGCATACTAGCCTTGCAAGAAAACACGATGTTGATGCCTATCCAACCATTTTGCTGTTTAATCATGGGGTCCCAACTGAATATCGCGGACCAAGGAAAGCTGATTTACTTGTTCGTTATCTTAAGAAATTCGCTGCTTCTGATGTTTCCATTCTCGATTCAGATTCTGCTGTGAATAATTTTGTTGAAGAAGCTGGTACTTTTTTCCCAGTATATATAGGTTTTGGGTTGGAAAGTTCATTGATAGAAAAGTTCGGCAAAAAGTATAAGAAAAATGCATGGTTTTCTGTGGCAAAGGATTTTTCAGAGGATCTCATGGTAACATATGACTTCGATAAGATTCCTGCCTTGGTTTCCCTTAATCCACTGTACAATGAGCGTAACACATTTTATGGTCCATTTGAAGATGATTTTTTGGAAGACTTTATAAAACAAAATCTCATTCCTTTGGCTGTGCCTGTATCCTATGAGACACTTAAGTTGATGAAAGCTGATGGTAGGAAAATAGTTTTGACTATTGTGGACGATGAAAGTGAAGAAAGTTCCAAAGAACTTGTTAAGTTATTGAGGGCTGCTGCATCTGCAAATCGTGACTTAATATTTGGTTATGTTGGAGTTAAACAGCTGGACGAATTTGCTGATAAATTTGATACTACTACTAAACTACCAAAAATGGTCATTTGGGATAAAGAAGATGAGTATCTTTCGGTAGTTGGTTCAGAAAGCATTGAAGGAGAGGATCAGGGAACACAAATCACTAAATTTCTAGAAGGATACAGAGAAGGAAGAACCATAAAGAACTCATTTAGTGGGCCATCACTGATGCAATTTATCCATAGATCTTTCGACATTAGAATGGTGTACATCGTTGTTTTTATGATTGCAGTGTTAATGCTTATTCAAACCTTAGGTAGTAAAGGAGATGATGGTGAATATCAGAGAGTACCAAACCAAGAAAAGGTTAATCAACCAAGCAGCTCTACCTCAGAAGGTGGAAGAAAAGAGTATAAAGAAGGTGACAAAGAAGATTAA

Protein sequence

>Msa0085370

MKICFVIFCIVSSIHFCRAEPLSVDGKVLILDESNFDSAISSFDHILVDFYAPWCGHCKRLSPELDAAAPVLAALKEPILIAKVDADKHTSLARKHDVDAYPTILLFNHGVPTEYRGPRKADLLVRYLKKFAASDVSILDSDSAVNNFVEEAGTFFPVYIGFGLESSLIEKFGKKYKKNAWFSVAKDFSEDLMVTYDFDKIPALVSLNPLYNERNTFYGPFEDDFLEDFIKQNLIPLAVPVSYETLKLMKADGRKIVLTIVDDESEESSKELVKLLRAAASANRDLIFGYVGVKQLDEFADKFDTTTKLPKMVIWDKEDEYLSVVGSESIEGEDQGTQITKFLEGYREGRTIKNSFSGPSLMQFIHRSFDIRMVYIVVFMIAVLMLIQTLGSKGDDGEYQRVPNQEKVNQPSSSTSEGGRKEYKEGDKED*