AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1012020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1012020 MtrunA17_Chr8g0350731 76.800 625 143 1 1 625 29 651 0.0 979
Msa1012020 MtrunA17_Chr7g0223711 75.845 621 147 2 1 620 1 619 0.0 978
Msa1012020 MtrunA17_Chr7g0223631 77.742 620 122 3 1 620 1 604 0.0 963
Msa1012020 MtrunA17_Chr7g0223751 73.920 625 161 1 1 625 1 623 0.0 956
Msa1012020 MtrunA17_Chr7g0223701 71.831 639 171 3 1 630 1 639 0.0 938
Msa1012020 MtrunA17_Chr7g0223621 72.801 614 165 1 1 614 1 612 0.0 923
Msa1012020 MtrunA17_Chr7g0223731 71.799 617 172 1 1 617 1 615 0.0 904
Msa1012020 MtrunA17_Chr7g0248131 71.955 624 170 4 1 620 1 623 0.0 904
Msa1012020 MtrunA17_Chr7g0223031 71.336 614 174 1 1 614 1 612 0.0 891
Msa1012020 MtrunA17_Chr7g0248151 71.543 622 174 2 1 620 1 621 0.0 890
Msa1012020 MtrunA17_Chr7g0223741 72.315 596 162 2 1 595 1 594 0.0 884
Msa1012020 MtrunA17_Chr7g0221661 65.905 613 206 2 1 612 1 611 0.0 823
Msa1012020 MtrunA17_Chr7g0223781 66.667 615 200 3 1 614 1 611 0.0 820
Msa1012020 MtrunA17_Chr7g0223801 64.610 616 215 2 1 616 1 613 0.0 820
Msa1012020 MtrunA17_Chr2g0293581 65.422 616 208 4 6 618 7 620 0.0 820
Msa1012020 MtrunA17_Chr7g0223681 76.226 530 124 1 91 620 2 529 0.0 815
Msa1012020 MtrunA17_Chr7g0223541 71.790 553 153 2 74 625 31 581 0.0 809
Msa1012020 MtrunA17_Chr5g0427901 63.694 628 214 3 1 616 1 626 0.0 809
Msa1012020 MtrunA17_Chr4g0031321 65.033 612 207 5 1 609 1 608 0.0 805
Msa1012020 MtrunA17_Chr7g0233311 63.813 619 219 3 1 616 1 617 0.0 803
Msa1012020 MtrunA17_Chr4g0031301 64.706 612 209 5 1 609 1 608 0.0 802
Msa1012020 MtrunA17_Chr7g0223291 63.724 623 219 5 1 620 1 619 0.0 801
Msa1012020 MtrunA17_Chr7g0262821 62.957 629 226 5 1 626 1 625 0.0 800
Msa1012020 MtrunA17_Chr2g0298851 63.974 619 217 5 1 616 1 616 0.0 800
Msa1012020 MtrunA17_Chr7g0223181 64.754 610 208 5 1 607 1 606 0.0 798
Msa1012020 MtrunA17_Chr7g0223721 64.763 613 212 3 1 611 1 611 0.0 798
Msa1012020 MtrunA17_Chr4g0073741 62.945 618 222 5 6 620 5 618 0.0 786
Msa1012020 MtrunA17_Chr2g0298861 63.360 625 213 5 1 611 1 623 0.0 781
Msa1012020 MtrunA17_Chr2g0287631 64.782 619 213 4 1 616 1 617 0.0 781
Msa1012020 MtrunA17_Chr7g0223851 62.298 618 229 3 1 616 10 625 0.0 775
Msa1012020 MtrunA17_Chr7g0225671 62.908 612 222 3 9 618 16 624 0.0 774
Msa1012020 MtrunA17_Chr4g0040931 63.218 609 220 3 1 607 1 607 0.0 771
Msa1012020 MtrunA17_Chr7g0217971 62.895 601 197 2 1 601 1 575 0.0 758
Msa1012020 MtrunA17_Chr2g0296391 68.491 530 163 3 1 528 1 528 0.0 740
Msa1012020 MtrunA17_Chr7g0223821 62.092 612 223 3 1 606 1 609 0.0 739
Msa1012020 MtrunA17_Chr7g0233301 59.128 619 217 3 1 616 1 586 0.0 736
Msa1012020 MtrunA17_Chr8g0390821 56.483 671 221 8 1 617 1 654 0.0 718
Msa1012020 MtrunA17_Chr4g0012541 60.504 595 223 3 1 594 1 584 0.0 714
Msa1012020 MtrunA17_Chr7g0223831 58.756 611 218 5 4 611 4 583 0.0 702
Msa1012020 MtrunA17_Chr2g0293601 66.154 520 138 3 1 518 1 484 0.0 698
Msa1012020 MtrunA17_Chr7g0215261 58.306 614 217 5 1 611 1 578 0.0 695
Msa1012020 MtrunA17_Chr6g0462601 57.283 611 252 5 1 606 1 607 0.0 682
Msa1012020 MtrunA17_Chr6g0462681 55.987 618 266 4 1 616 1 614 0.0 680
Msa1012020 MtrunA17_Chr2g0331381 62.523 539 139 3 10 548 7 482 0.0 677
Msa1012020 MtrunA17_Chr6g0462711 56.220 619 261 5 8 619 9 624 0.0 667
Msa1012020 MtrunA17_Chr7g0228281 55.806 620 225 5 1 618 62 634 0.0 666
Msa1012020 MtrunA17_Chr6g0462771 57.759 580 234 5 8 580 8 583 0.0 648
Msa1012020 MtrunA17_Chr6g0462641 54.766 619 269 5 8 619 8 622 0.0 646
Msa1012020 MtrunA17_Chr2g0284681 57.093 578 229 8 9 577 8 575 0.0 642
Msa1012020 MtrunA17_Chr8g0388761 53.807 591 260 9 7 592 36 618 0.0 620
Msa1012020 MtrunA17_Chr8g0388671 53.976 591 259 9 7 592 36 618 0.0 618
Msa1012020 MtrunA17_Chr2g0293561 74.866 374 94 0 1 374 1 374 0.0 609
Msa1012020 MtrunA17_Chr1g0166551 51.405 605 179 4 9 611 5 496 0.0 580
Msa1012020 MtrunA17_Chr6g0462611 53.676 544 248 3 74 616 22 562 0.0 568
Msa1012020 MtrunA17_Chr2g0299821 63.291 395 141 2 1 393 1 393 1.23e-179 518
Msa1012020 MtrunA17_Chr2g0299921 67.766 394 123 2 3 396 1023 1412 2.04e-177 549
Msa1012020 MtrunA17_Chr2g0299921 65.736 394 130 3 3 395 1407 1796 1.95e-162 509
Msa1012020 MtrunA17_Chr2g0299791 67.010 388 124 2 1 388 1034 1417 3.33e-174 533
Msa1012020 MtrunA17_Chr2g0299851 65.128 390 132 2 1 390 1030 1415 1.81e-173 531
Msa1012020 MtrunA17_Chr2g0293271 58.257 436 110 4 21 456 43 406 3.81e-170 491
Msa1012020 MtrunA17_Chr6g0462861 46.587 586 275 11 9 581 9 569 8.98e-164 483
Msa1012020 MtrunA17_Chr2g0299881 63.409 399 137 4 10 403 1039 1433 1.68e-162 503
Msa1012020 MtrunA17_Chr2g0299881 60.274 73 27 1 180 250 1403 1475 3.42e-18 89.4
Msa1012020 MtrunA17_Chr2g0279901 46.953 558 270 12 10 560 57 595 6.49e-159 472
Msa1012020 MtrunA17_Chr4g0049501 46.237 558 275 12 10 560 54 593 3.23e-156 465
Msa1012020 MtrunA17_Chr7g0245521 73.529 272 72 0 1 272 1 272 1.62e-150 435
Msa1012020 MtrunA17_Chr1g0151991 69.416 291 89 0 1 291 1 291 5.21e-148 429
Msa1012020 MtrunA17_Chr2g0277021 43.243 592 310 13 10 594 72 644 2.08e-146 441
Msa1012020 MtrunA17_Chr7g0223671 89.005 191 21 0 74 264 8 198 1.34e-121 358
Msa1012020 MtrunA17_Chr7g0223761 51.743 373 135 3 241 611 3 332 1.72e-118 356
Msa1012020 MtrunA17_Chr7g0245531 57.143 315 132 2 305 618 2 314 1.73e-115 347
Msa1012020 MtrunA17_Chr1g0188601 76.440 191 45 0 92 282 1 191 1.92e-104 314
Msa1012020 MtrunA17_Chr1g0152001 56.376 298 126 2 315 611 1 295 2.21e-103 316
Msa1012020 MtrunA17_Chr6g0462631 49.091 330 119 5 91 416 13 297 2.33e-98 302
Msa1012020 MtrunA17_Chr6g0462751 46.000 350 129 4 67 413 12 304 1.69e-92 288
Msa1012020 MtrunA17_Chr1g0188611 52.862 297 129 4 322 616 1 288 3.36e-81 258
Msa1012020 MtrunA17_Chr5g0394391 34.653 505 302 13 8 495 28 521 5.13e-81 266
Msa1012020 MtrunA17_Chr7g0223771 73.203 153 41 0 93 245 1 153 4.41e-79 248
Msa1012020 MtrunA17_Chr6g0462791 63.636 176 63 1 108 283 1 175 1.31e-72 231
Msa1012020 MtrunA17_Chr4g0004331 32.880 441 277 6 10 436 4 439 1.19e-69 242
Msa1012020 MtrunA17_Chr4g0046881 74.820 139 35 0 131 269 10 148 3.24e-69 221
Msa1012020 MtrunA17_Chr2g0331901 31.072 457 294 7 10 453 4 452 3.09e-68 238
Msa1012020 MtrunA17_Chr3g0098761 27.439 656 409 18 10 607 4 650 7.95e-66 230
Msa1012020 MtrunA17_Chr5g0444001 31.628 430 282 7 10 432 4 428 1.54e-63 219
Msa1012020 MtrunA17_Chr7g0223861 73.282 131 35 0 78 208 4 134 1.31e-62 203
Msa1012020 MtrunA17_Chr3g0120101 30.019 523 320 14 10 495 27 540 1.08e-58 211
Msa1012020 MtrunA17_Chr4g0064621 32.375 522 318 16 8 504 139 650 2.45e-56 202
Msa1012020 MtrunA17_Chr4g0060241 29.134 508 328 13 8 500 19 509 2.53e-52 188
Msa1012020 MtrunA17_Chr6g0462701 53.216 171 56 1 100 270 22 168 3.06e-52 177
Msa1012020 MtrunA17_Chr5g0394221 38.732 284 161 7 291 568 61 337 2.61e-50 178
Msa1012020 MtrunA17_Chr6g0481391 63.115 122 42 1 38 159 13 131 6.98e-47 161
Msa1012020 MtrunA17_Chr4g0046871 76.768 99 23 0 339 437 9 107 2.85e-46 159
Msa1012020 MtrunA17_Chr5g0394231 38.767 227 88 4 74 299 5 181 1.82e-44 156
Msa1012020 MtrunA17_Chr6g0462691 53.472 144 64 2 322 464 1 142 5.65e-43 152
Msa1012020 MtrunA17_Chr5g0442171 34.925 335 188 13 170 489 1 320 1.18e-42 156
Msa1012020 MtrunA17_Chr7g0245541 43.069 202 112 2 417 617 1 200 6.75e-42 150
Msa1012020 MtrunA17_Chr7g0223691 84.932 73 11 0 1 73 1 73 1.60e-40 142
Msa1012020 MtrunA17_Chr1g0188591 71.233 73 21 0 1 73 1 73 1.32e-30 115
Msa1012020 MtrunA17_Chr7g0223661 55.000 120 11 1 315 434 1 77 1.83e-30 114
Msa1012020 MtrunA17_Chr6g0481381 71.622 74 21 0 176 249 1 74 7.22e-30 116
Msa1012020 MtrunA17_Chr6g0462621 72.603 73 18 1 1 73 1 71 6.27e-29 109
Msa1012020 MtrunA17_Chr7g0223791 62.963 81 22 2 56 136 18 90 6.07e-26 105
Msa1012020 MtrunA17_Chr7g0223791 34.722 144 74 3 428 569 51 176 6.13e-15 73.6
Msa1012020 MtrunA17_Chr7g0223881 59.211 76 30 1 288 363 9 83 2.75e-23 94.4
Msa1012020 MtrunA17_Chr7g0221651 52.381 84 40 0 215 298 1 84 1.21e-22 92.4
Msa1012020 MtrunA17_Chr5g0442161 31.902 163 101 5 2 157 18 177 7.93e-16 75.9
Msa1012020 MtrunA17_Chr6g0462801 56.061 66 24 1 322 382 1 66 2.06e-15 71.6
Msa1012020 MtrunA17_Chr2g0284661 45.783 83 44 1 368 449 61 143 1.18e-14 71.6
Msa1012020 MtrunA17_Chr2g0299891 69.767 43 13 0 315 357 1 43 3.75e-14 67.8
Msa1012020 MtrunA17_Chr7g0223871 36.752 117 73 1 492 607 7 123 6.39e-14 69.3
Msa1012020 MtrunA17_Chr4g0064651 41.053 95 52 3 397 489 29 121 8.72e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1012020 AT3G12580.1 64.160 625 217 5 1 622 1 621 0.0 814
Msa1012020 AT5G02500.1 64.216 612 212 5 1 609 1 608 0.0 799
Msa1012020 AT5G02490.1 63.235 612 218 5 1 609 1 608 0.0 791
Msa1012020 AT1G16030.1 63.089 615 220 5 9 620 8 618 0.0 783
Msa1012020 AT3G09440.1 63.072 612 219 5 1 609 1 608 0.0 779
Msa1012020 AT3G09440.4 63.072 612 219 5 1 609 1 608 0.0 779
Msa1012020 AT3G09440.2 63.072 612 219 5 1 609 1 608 0.0 779
Msa1012020 AT3G09440.3 63.072 612 219 5 1 609 1 608 0.0 779
Msa1012020 AT1G56410.1 61.156 623 233 6 1 620 1 617 0.0 760
Msa1012020 AT5G28540.1 54.605 608 263 9 7 609 35 634 0.0 639
Msa1012020 AT5G42020.1 54.605 608 263 9 7 609 35 634 0.0 637
Msa1012020 AT5G42020.3 54.605 608 263 9 7 609 40 639 0.0 635
Msa1012020 AT1G09080.2 53.548 620 276 8 2 617 35 646 0.0 613
Msa1012020 AT1G09080.1 53.548 620 276 8 2 617 45 656 0.0 612
Msa1012020 AT5G02500.2 72.379 391 105 2 1 390 1 389 0.0 594
Msa1012020 AT5G02500.2 39.785 93 56 0 517 609 386 478 5.67e-13 72.0
Msa1012020 AT5G42020.2 56.707 492 200 9 7 493 35 518 0.0 536
Msa1012020 AT5G09590.1 46.416 558 274 12 10 560 60 599 2.03e-154 461
Msa1012020 AT4G37910.1 46.057 558 276 12 10 560 55 594 8.97e-150 449
Msa1012020 AT4G37910.2 46.057 558 276 12 10 560 55 594 8.97e-150 449
Msa1012020 AT5G49910.1 41.640 622 336 14 10 623 81 683 5.53e-145 437
Msa1012020 AT4G24280.1 44.186 559 288 12 10 561 81 622 2.19e-144 436
Msa1012020 AT1G11660.4 28.507 670 403 15 10 620 4 656 6.01e-76 258
Msa1012020 AT1G11660.3 28.507 670 403 15 10 620 4 656 6.01e-76 258
Msa1012020 AT1G11660.1 28.507 670 403 15 10 620 4 656 6.01e-76 258
Msa1012020 AT1G79930.2 32.230 453 286 6 10 449 4 448 2.47e-71 246
Msa1012020 AT2G32120.1 33.140 516 310 15 8 508 29 524 4.06e-71 240
Msa1012020 AT2G32120.2 33.140 516 310 15 8 508 29 524 4.06e-71 240
Msa1012020 AT1G79920.3 32.426 441 279 6 10 436 4 439 8.83e-71 243
Msa1012020 AT1G79920.2 32.426 441 279 6 10 436 4 439 8.83e-71 243
Msa1012020 AT1G79920.4 32.426 441 279 6 10 436 4 439 8.83e-71 243
Msa1012020 AT1G79920.1 32.426 441 279 6 10 436 4 439 9.10e-71 243
Msa1012020 AT1G79930.1 32.230 453 286 6 10 449 4 448 1.03e-70 245
Msa1012020 AT1G11660.2 28.910 633 376 14 47 620 2 619 6.08e-70 241
Msa1012020 AT4G16660.1 28.381 525 333 11 6 495 23 539 4.98e-59 213
Msa1012020 AT4G16660.2 28.381 525 333 11 6 495 47 563 1.01e-58 212

Find 121 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCAACCTCCTCAAGGCTTT+TGG 0.157336 7_1:+17088553 None:intergenic
TATACTGTTGTGGCCCTTTA+AGG 0.172434 7_1:-17089073 Msa1012020:CDS
AGCAATTTCACCTGCATCTT+TGG 0.215804 7_1:+17088855 None:intergenic
TGTTTCTCTTCTCACAATTA+AGG 0.222042 7_1:-17088704 Msa1012020:CDS
TCCTTATTGGTGGTTCTTCT+AGG 0.251386 7_1:-17088318 Msa1012020:CDS
CTTACTCTTGCGTTGGAGTA+TGG 0.256437 7_1:-17089568 Msa1012020:CDS
TTTCAAGTCAAGGCCACTTC+TGG 0.262714 7_1:-17088673 Msa1012020:CDS
CCTTGAAATTGTCAGCTTCC+TGG 0.269169 7_1:+17087768 None:intergenic
ATTACAATAACTAATGAAAA+TGG 0.292577 7_1:-17087824 Msa1012020:CDS
GACAGTGTTGGTTGGGTTAG+AGG 0.297455 7_1:+17089424 None:intergenic
AACACCAGCAATGACCTTAA+AGG 0.304651 7_1:+17089059 None:intergenic
TAAAATGAGGCAGTTATTAC+AGG 0.305788 7_1:-17088290 Msa1012020:CDS
AGAACTTTCTTATATCAATA+AGG 0.318987 7_1:-17088506 Msa1012020:CDS
GATTTATTCTGCAATGATAA+AGG 0.320863 7_1:-17087618 Msa1012020:CDS
AATTCATTACCTTCAACCTT+AGG 0.323530 7_1:+17088034 None:intergenic
TGGCCCTTTAAGGTCATTGC+TGG 0.328178 7_1:-17089063 Msa1012020:CDS
GTAGATGATGTAGTCCTTAT+TGG 0.331302 7_1:-17088331 Msa1012020:CDS
AACCCAACCAACACTGTCTT+TGG 0.338640 7_1:-17089419 Msa1012020:intron
CCTGATGAGGCTGTTGCTTA+TGG 0.340665 7_1:-17088229 Msa1012020:CDS
TAAGTTTGAGCAACTGAATA+TGG 0.355597 7_1:-17088422 Msa1012020:CDS
ATCATAGCTGATATTTCTTC+GGG 0.360547 7_1:+17088982 None:intergenic
AATCATAGCTGATATTTCTT+CGG 0.361993 7_1:+17088981 None:intergenic
CAGTATATCATTCTGAACTA+TGG 0.370015 7_1:+17089089 None:intergenic
TCCTAGAAGAACCACCAATA+AGG 0.379425 7_1:+17088317 None:intergenic
AGTTGAAGCAAGAAATGCTT+TGG 0.381737 7_1:-17087720 Msa1012020:CDS
ATTCATTACCTTCAACCTTA+GGG 0.381839 7_1:+17088035 None:intergenic
AGTTGATATTATGGTTTATG+AGG 0.383249 7_1:-17088008 Msa1012020:CDS
TGCTTATGGTGCAGCTGTCC+AGG 0.386356 7_1:-17088215 Msa1012020:CDS
CCATAAGCAACAGCCTCATC+AGG 0.392319 7_1:+17088229 None:intergenic
CGATGATCGTTGTGAAATAC+AGG 0.394587 7_1:-17089026 Msa1012020:CDS
ACATCCCGCAGTACCAAGTT+TGG 0.398325 7_1:+17088160 None:intergenic
TAAACTTGTGTCTTCTTGAA+TGG 0.405865 7_1:+17088064 None:intergenic
AAGGGAGAAAGTTTGATTGA+TGG 0.409606 7_1:-17087599 Msa1012020:CDS
CACTAAGAATGTTCCAAACT+TGG 0.411003 7_1:-17088173 Msa1012020:CDS
AATTTCACCTGCATCTTTGG+TGG 0.413962 7_1:+17088858 None:intergenic
ACTGCAGCTGCTCTTGCATA+TGG 0.416475 7_1:-17088799 Msa1012020:CDS
TACCAAAGACAGTGTTGGTT+GGG 0.419201 7_1:+17089417 None:intergenic
ATTTATTCTGCAATGATAAA+GGG 0.419771 7_1:-17087617 Msa1012020:CDS
TTCATCTTTGATCTCGGTGG+TGG 0.426074 7_1:-17088736 Msa1012020:CDS
AAAGATGCAGGTGAAATTGC+TGG 0.431586 7_1:-17088853 Msa1012020:CDS
AGAGATTGAGAGAATGATCC+AGG 0.439899 7_1:-17087786 Msa1012020:CDS
ACACCAGCAATGACCTTAAA+GGG 0.451256 7_1:+17089060 None:intergenic
ATGAAAATGGAAGATTATCA+AGG 0.459072 7_1:-17087811 Msa1012020:CDS
TATTATACCCCTAAGGTTGA+AGG 0.468708 7_1:-17088043 Msa1012020:CDS
GTAATCACTGCATTCTCAAC+CGG 0.472599 7_1:+17088916 None:intergenic
TTATGAGTGTGGTGATTCCT+AGG 0.478815 7_1:-17088099 Msa1012020:CDS
TGAGAATCATTAAAATAAGC+AGG 0.481016 7_1:+17088889 None:intergenic
GGACCTCTTTGAAAAGTGTA+TGG 0.487372 7_1:-17088401 Msa1012020:CDS
GATGTTACTCCTTTGTCACT+TGG 0.489806 7_1:-17088142 Msa1012020:CDS
CCAGGAAGCTGACAATTTCA+AGG 0.491682 7_1:-17087768 Msa1012020:CDS
CTTCTAGGATTCCTAAAATG+AGG 0.498503 7_1:-17088303 Msa1012020:CDS
TACTTTGATATAGATGCTAA+TGG 0.501593 7_1:-17087896 Msa1012020:CDS
CTGTATTTCACAACGATCAT+CGG 0.501741 7_1:+17089027 None:intergenic
GTTGATATTATGGTTTATGA+GGG 0.502673 7_1:-17088007 Msa1012020:CDS
GGAAGGCCACGGGGAGCAAG+AGG 0.503757 7_1:+17087929 None:intergenic
TTGTCTTGCAGATGCTAAGA+TGG 0.509643 7_1:-17088365 Msa1012020:CDS
ATCATTAAAATAAGCAGGTA+CGG 0.510353 7_1:+17088894 None:intergenic
AATGGTACAGAAGTATTCCT+AGG 0.513462 7_1:+17088082 None:intergenic
AAGAACCAAGTTGACATTAG+TGG 0.515239 7_1:-17088580 Msa1012020:CDS
TGTTCCAAACTTGGTACTGC+GGG 0.515956 7_1:-17088164 Msa1012020:CDS
TTTGATTGATGGCAACCAGC+AGG 0.518662 7_1:-17087588 Msa1012020:CDS
TACTGTGAGAGGAAGGCCAC+GGG 0.519886 7_1:+17087919 None:intergenic
AGAAGAGCCACCAAAGATGC+AGG 0.521744 7_1:-17088865 Msa1012020:CDS
TCACTTGGTATCGATACAAA+AGG 0.522255 7_1:-17088127 Msa1012020:CDS
GAAATCATACACAATGATCA+AGG 0.529854 7_1:-17089524 Msa1012020:CDS
GGACGCCACTAATGTCAACT+TGG 0.531186 7_1:+17088575 None:intergenic
GTTGCGATCGGAATTGACCT+TGG 0.535133 7_1:-17089596 Msa1012020:CDS
ACTGGAACTCAAAGGTTGGT+TGG 0.538381 7_1:-17089470 Msa1012020:CDS
CCAGTAAAAGCAACACAAGA+AGG 0.544224 7_1:+17089488 None:intergenic
TGGCAACCAGCAGGAAGATA+CGG 0.549187 7_1:-17087579 Msa1012020:CDS
ACAAGTTTATTATACCCCTA+AGG 0.550516 7_1:-17088050 Msa1012020:CDS
GGTTGCGAAATTCTTGCGAA+AGG 0.551964 7_1:-17088537 Msa1012020:CDS
GTTGCGAAATTCTTGCGAAA+GGG 0.558548 7_1:-17088536 Msa1012020:CDS
ACTTTGTGAAAGAGTTTGAA+AGG 0.558605 7_1:-17088603 Msa1012020:CDS
GACATAGATGCTCTATGTCA+AGG 0.558830 7_1:-17088475 Msa1012020:CDS
GGATAATGTCTTTCAAGTCA+AGG 0.559704 7_1:-17088683 Msa1012020:CDS
AAACAGCCGTATCTTCCTGC+TGG 0.561295 7_1:+17087573 None:intergenic
GGAACGACTTACTCTTGCGT+TGG 0.561375 7_1:-17089575 Msa1012020:CDS
TTCATTACCTTCAACCTTAG+GGG 0.562836 7_1:+17088036 None:intergenic
GCAAGTGAGAACAACTTGCT+TGG 0.568418 7_1:-17087971 Msa1012020:CDS
CAAAGTATACTGTGAGAGGA+AGG 0.569317 7_1:+17087912 None:intergenic
GATGATGTAGTCCTTATTGG+TGG 0.571510 7_1:-17088328 Msa1012020:CDS
AGAATTTCGCAACCTCCTCA+AGG 0.576040 7_1:+17088546 None:intergenic
AGAGGACTTTGATAACAGAA+TGG 0.578386 7_1:-17088632 Msa1012020:CDS
AAAAGGAGATATTATGAGTG+TGG 0.581319 7_1:-17088110 Msa1012020:CDS
CGCAAGAGTAAGTCGTTCCA+AGG 0.583763 7_1:+17089579 None:intergenic
TGAAAATGGAAGATTATCAA+GGG 0.589866 7_1:-17087810 Msa1012020:CDS
TATGCAAGAGCAGCTGCAGT+TGG 0.590893 7_1:+17088802 None:intergenic
TAGAGCATCTATGTCAATTG+TGG 0.591331 7_1:+17088483 None:intergenic
CTTCACCAAGCAAAACAGCC+TGG 0.591823 7_1:+17088197 None:intergenic
GAGGTGTGTGTCTCCAGAAG+TGG 0.591955 7_1:+17088660 None:intergenic
ATATCAAAGTATACTGTGAG+AGG 0.593678 7_1:+17087908 None:intergenic
TGAATTACCAAAGACAGTGT+TGG 0.594114 7_1:+17089412 None:intergenic
TATATTAAGCGTCTCTGCAG+TGG 0.597618 7_1:-17087873 Msa1012020:CDS
TTACCAAAGACAGTGTTGGT+TGG 0.599364 7_1:+17089416 None:intergenic
ACTTCTGTTCATCAATCACA+CGG 0.600341 7_1:-17088447 Msa1012020:CDS
CGTTGTGAAATACAGGGGCA+AGG 0.607751 7_1:-17089019 Msa1012020:CDS
GAATGAACAGAACGATAGAG+TGG 0.608601 7_1:-17089546 Msa1012020:CDS
AAATACGATGGAGTTGCGAT+CGG 0.608848 7_1:-17089608 Msa1012020:CDS
AAATCTTCTCTTTGTCTACA+CGG 0.609249 7_1:+17087636 None:intergenic
TTCAGAATGATATACTGTTG+TGG 0.614464 7_1:-17089083 Msa1012020:CDS
AGACACACACCTCGGAGGAG+AGG 0.619985 7_1:-17088650 Msa1012020:CDS
AAAAGCAACACAAGAAGGAG+TGG 0.623125 7_1:+17089493 None:intergenic
CATAAGCAACAGCCTCATCA+GGG 0.634330 7_1:+17088230 None:intergenic
GCTATGAATAAGATCGACAA+AGG 0.637168 7_1:-17087509 Msa1012020:CDS
CAAGAGCATTAACCCTGATG+AGG 0.639574 7_1:-17088242 Msa1012020:CDS
AAAGTTCCTCTTGCTCCCCG+TGG 0.642810 7_1:-17087935 Msa1012020:CDS
GGACTTTGATAACAGAATGG+TGG 0.643649 7_1:-17088629 Msa1012020:CDS
GTATCGATACCAAGTGACAA+AGG 0.643846 7_1:+17088133 None:intergenic
ATACTGTGAGAGGAAGGCCA+CGG 0.644258 7_1:+17087918 None:intergenic
ATGTTCCAAACTTGGTACTG+CGG 0.659079 7_1:-17088165 Msa1012020:CDS
GCGTCCCAAAAGCCTTGAGG+AGG 0.663602 7_1:-17088558 Msa1012020:CDS
GTGGCGTCCCAAAAGCCTTG+AGG 0.664119 7_1:-17088561 Msa1012020:CDS
GATGATCGTTGTGAAATACA+GGG 0.665247 7_1:-17089025 Msa1012020:CDS
ACTTCTGGAGACACACACCT+CGG 0.666959 7_1:-17088658 Msa1012020:CDS
CTTCTGTTCATCAATCACAC+GGG 0.674858 7_1:-17088446 Msa1012020:CDS
TATCAAAGTCCTCTCCTCCG+AGG 0.688667 7_1:+17088641 None:intergenic
ATGATCGTTGTGAAATACAG+GGG 0.709998 7_1:-17089024 Msa1012020:CDS
TCTGGAGACACACACCTCGG+AGG 0.712848 7_1:-17088655 Msa1012020:CDS
TCTGCAGTGGAAGAAACCAG+TGG 0.733951 7_1:-17087860 Msa1012020:CDS
ACTGTGAGAGGAAGGCCACG+GGG 0.773300 7_1:+17087920 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAATAATATAAACTTTAG+AGG + chr7_1:17087762-17087781 None:intergenic 15.0%
!!! TGAATTTTTAGTTGATATTA+TGG - chr7_1:17089075-17089094 Msa1012020:CDS 15.0%
!! ATTACAATAACTAATGAAAA+TGG - chr7_1:17089268-17089287 Msa1012020:intron 15.0%
!! AGAAATAATATAAACTTTAG+AGG + chr7_1:17087762-17087781 None:intergenic 15.0%
!!! TGAATTTTTAGTTGATATTA+TGG - chr7_1:17089075-17089094 Msa1012020:CDS 15.0%
!! ATTACAATAACTAATGAAAA+TGG - chr7_1:17089268-17089287 Msa1012020:intron 15.0%
!!! TCATTCTTTGATTTCTATTT+AGG - chr7_1:17087717-17087736 Msa1012020:CDS 20.0%
!!! CATTCTTTGATTTCTATTTA+GGG - chr7_1:17087718-17087737 Msa1012020:CDS 20.0%
!!! AATATTTTCATCTTTGATCT+CGG - chr7_1:17088350-17088369 Msa1012020:CDS 20.0%
!! AGAACTTTCTTATATCAATA+AGG - chr7_1:17088586-17088605 Msa1012020:CDS 20.0%
!! ATTTATTCTGCAATGATAAA+GGG - chr7_1:17089475-17089494 Msa1012020:CDS 20.0%
!!! TGTTTTTGTAAACTTTTTGA+AGG - chr7_1:17089537-17089556 Msa1012020:CDS 20.0%
!!! TCATTCTTTGATTTCTATTT+AGG - chr7_1:17087717-17087736 Msa1012020:CDS 20.0%
!!! CATTCTTTGATTTCTATTTA+GGG - chr7_1:17087718-17087737 Msa1012020:CDS 20.0%
!!! AATATTTTCATCTTTGATCT+CGG - chr7_1:17088350-17088369 Msa1012020:CDS 20.0%
!! AGAACTTTCTTATATCAATA+AGG - chr7_1:17088586-17088605 Msa1012020:CDS 20.0%
!! ATTTATTCTGCAATGATAAA+GGG - chr7_1:17089475-17089494 Msa1012020:CDS 20.0%
!!! TGTTTTTGTAAACTTTTTGA+AGG - chr7_1:17089537-17089556 Msa1012020:CDS 20.0%
! AATCATAGCTGATATTTCTT+CGG + chr7_1:17088114-17088133 None:intergenic 25.0%
! ATCATTAAAATAAGCAGGTA+CGG + chr7_1:17088201-17088220 None:intergenic 25.0%
! TGAGAATCATTAAAATAAGC+AGG + chr7_1:17088206-17088225 None:intergenic 25.0%
!!! TTATTACAGGAGTTTTTCAA+AGG - chr7_1:17088815-17088834 Msa1012020:CDS 25.0%
!!! TATTACAGGAGTTTTTCAAA+GGG - chr7_1:17088816-17088835 Msa1012020:CDS 25.0%
!! AGTTGATATTATGGTTTATG+AGG - chr7_1:17089084-17089103 Msa1012020:CDS 25.0%
! GTTGATATTATGGTTTATGA+GGG - chr7_1:17089085-17089104 Msa1012020:CDS 25.0%
! TACTTTGATATAGATGCTAA+TGG - chr7_1:17089196-17089215 Msa1012020:intron 25.0%
!!! AATTTCATTTTTATTGCCAC+TGG + chr7_1:17089251-17089270 None:intergenic 25.0%
! ATGAAAATGGAAGATTATCA+AGG - chr7_1:17089281-17089300 Msa1012020:intron 25.0%
! TGAAAATGGAAGATTATCAA+GGG - chr7_1:17089282-17089301 Msa1012020:intron 25.0%
! GATTTATTCTGCAATGATAA+AGG - chr7_1:17089474-17089493 Msa1012020:CDS 25.0%
! AATCATAGCTGATATTTCTT+CGG + chr7_1:17088114-17088133 None:intergenic 25.0%
! ATCATTAAAATAAGCAGGTA+CGG + chr7_1:17088201-17088220 None:intergenic 25.0%
! TGAGAATCATTAAAATAAGC+AGG + chr7_1:17088206-17088225 None:intergenic 25.0%
!!! TTATTACAGGAGTTTTTCAA+AGG - chr7_1:17088815-17088834 Msa1012020:CDS 25.0%
!!! TATTACAGGAGTTTTTCAAA+GGG - chr7_1:17088816-17088835 Msa1012020:CDS 25.0%
!! AGTTGATATTATGGTTTATG+AGG - chr7_1:17089084-17089103 Msa1012020:CDS 25.0%
! GTTGATATTATGGTTTATGA+GGG - chr7_1:17089085-17089104 Msa1012020:CDS 25.0%
! TACTTTGATATAGATGCTAA+TGG - chr7_1:17089196-17089215 Msa1012020:intron 25.0%
!!! AATTTCATTTTTATTGCCAC+TGG + chr7_1:17089251-17089270 None:intergenic 25.0%
! ATGAAAATGGAAGATTATCA+AGG - chr7_1:17089281-17089300 Msa1012020:intron 25.0%
! TGAAAATGGAAGATTATCAA+GGG - chr7_1:17089282-17089301 Msa1012020:intron 25.0%
! GATTTATTCTGCAATGATAA+AGG - chr7_1:17089474-17089493 Msa1012020:CDS 25.0%
GAAATCATACACAATGATCA+AGG - chr7_1:17087568-17087587 Msa1012020:CDS 30.0%
! TAATTTTTGCAGATGCAAAG+AGG - chr7_1:17087955-17087974 Msa1012020:CDS 30.0%
CAGTATATCATTCTGAACTA+TGG + chr7_1:17088006-17088025 None:intergenic 30.0%
TTCAGAATGATATACTGTTG+TGG - chr7_1:17088009-17088028 Msa1012020:CDS 30.0%
ATCATAGCTGATATTTCTTC+GGG + chr7_1:17088113-17088132 None:intergenic 30.0%
TGTTTCTCTTCTCACAATTA+AGG - chr7_1:17088388-17088407 Msa1012020:CDS 30.0%
ACTTTGTGAAAGAGTTTGAA+AGG - chr7_1:17088489-17088508 Msa1012020:CDS 30.0%
TAAGTTTGAGCAACTGAATA+TGG - chr7_1:17088670-17088689 Msa1012020:CDS 30.0%
! TGTAATAACTGCCTCATTTT+AGG + chr7_1:17088803-17088822 None:intergenic 30.0%
TAAAATGAGGCAGTTATTAC+AGG - chr7_1:17088802-17088821 Msa1012020:CDS 30.0%
AAAAGGAGATATTATGAGTG+TGG - chr7_1:17088982-17089001 Msa1012020:CDS 30.0%
TAAACTTGTGTCTTCTTGAA+TGG + chr7_1:17089031-17089050 None:intergenic 30.0%
ACAAGTTTATTATACCCCTA+AGG - chr7_1:17089042-17089061 Msa1012020:CDS 30.0%
ATTCATTACCTTCAACCTTA+GGG + chr7_1:17089060-17089079 None:intergenic 30.0%
AATTCATTACCTTCAACCTT+AGG + chr7_1:17089061-17089080 None:intergenic 30.0%
ATATCAAAGTATACTGTGAG+AGG + chr7_1:17089187-17089206 None:intergenic 30.0%
AAATCTTCTCTTTGTCTACA+CGG + chr7_1:17089459-17089478 None:intergenic 30.0%
GAAATCATACACAATGATCA+AGG - chr7_1:17087568-17087587 Msa1012020:CDS 30.0%
! TAATTTTTGCAGATGCAAAG+AGG - chr7_1:17087955-17087974 Msa1012020:CDS 30.0%
CAGTATATCATTCTGAACTA+TGG + chr7_1:17088006-17088025 None:intergenic 30.0%
TTCAGAATGATATACTGTTG+TGG - chr7_1:17088009-17088028 Msa1012020:CDS 30.0%
ATCATAGCTGATATTTCTTC+GGG + chr7_1:17088113-17088132 None:intergenic 30.0%
TGTTTCTCTTCTCACAATTA+AGG - chr7_1:17088388-17088407 Msa1012020:CDS 30.0%
ACTTTGTGAAAGAGTTTGAA+AGG - chr7_1:17088489-17088508 Msa1012020:CDS 30.0%
TAAGTTTGAGCAACTGAATA+TGG - chr7_1:17088670-17088689 Msa1012020:CDS 30.0%
! TGTAATAACTGCCTCATTTT+AGG + chr7_1:17088803-17088822 None:intergenic 30.0%
TAAAATGAGGCAGTTATTAC+AGG - chr7_1:17088802-17088821 Msa1012020:CDS 30.0%
AAAAGGAGATATTATGAGTG+TGG - chr7_1:17088982-17089001 Msa1012020:CDS 30.0%
TAAACTTGTGTCTTCTTGAA+TGG + chr7_1:17089031-17089050 None:intergenic 30.0%
ACAAGTTTATTATACCCCTA+AGG - chr7_1:17089042-17089061 Msa1012020:CDS 30.0%
ATTCATTACCTTCAACCTTA+GGG + chr7_1:17089060-17089079 None:intergenic 30.0%
AATTCATTACCTTCAACCTT+AGG + chr7_1:17089061-17089080 None:intergenic 30.0%
ATATCAAAGTATACTGTGAG+AGG + chr7_1:17089187-17089206 None:intergenic 30.0%
AAATCTTCTCTTTGTCTACA+CGG + chr7_1:17089459-17089478 None:intergenic 30.0%
!! TTGCTTTTACTGGAACTCAA+AGG - chr7_1:17087614-17087633 Msa1012020:CDS 35.0%
! TTTTACTGGAACTCAAAGGT+TGG - chr7_1:17087618-17087637 Msa1012020:CDS 35.0%
! GTTAGAGGAAGCTTGATTTT+TGG + chr7_1:17087656-17087675 None:intergenic 35.0%
TGAATTACCAAAGACAGTGT+TGG + chr7_1:17087683-17087702 None:intergenic 35.0%
CTGTATTTCACAACGATCAT+CGG + chr7_1:17088068-17088087 None:intergenic 35.0%
GATGATCGTTGTGAAATACA+GGG - chr7_1:17088067-17088086 Msa1012020:CDS 35.0%
ATGATCGTTGTGAAATACAG+GGG - chr7_1:17088068-17088087 Msa1012020:CDS 35.0%
!!! AGAGATTGCAGAAGCATTTT+TGG - chr7_1:17088148-17088167 Msa1012020:CDS 35.0%
! ATTTTCATCTTTGATCTCGG+TGG - chr7_1:17088353-17088372 Msa1012020:CDS 35.0%
! GGATAATGTCTTTCAAGTCA+AGG - chr7_1:17088409-17088428 Msa1012020:CDS 35.0%
! AGAGGACTTTGATAACAGAA+TGG - chr7_1:17088460-17088479 Msa1012020:CDS 35.0%
! AAGAACCAAGTTGACATTAG+TGG - chr7_1:17088512-17088531 Msa1012020:CDS 35.0%
! TAGAGCATCTATGTCAATTG+TGG + chr7_1:17088612-17088631 None:intergenic 35.0%
ACTTCTGTTCATCAATCACA+CGG - chr7_1:17088645-17088664 Msa1012020:CDS 35.0%
! TCTCCATACACTTTTCAAAG+AGG + chr7_1:17088697-17088716 None:intergenic 35.0%
GTAGATGATGTAGTCCTTAT+TGG - chr7_1:17088761-17088780 Msa1012020:CDS 35.0%
!! CTTCTAGGATTCCTAAAATG+AGG - chr7_1:17088789-17088808 Msa1012020:CDS 35.0%
CACTAAGAATGTTCCAAACT+TGG - chr7_1:17088919-17088938 Msa1012020:CDS 35.0%
!! TCACTTGGTATCGATACAAA+AGG - chr7_1:17088965-17088984 Msa1012020:CDS 35.0%
!! AATGGTACAGAAGTATTCCT+AGG + chr7_1:17089013-17089032 None:intergenic 35.0%
TATTATACCCCTAAGGTTGA+AGG - chr7_1:17089049-17089068 Msa1012020:CDS 35.0%
TTCATTACCTTCAACCTTAG+GGG + chr7_1:17089059-17089078 None:intergenic 35.0%
AGTTGAAGCAAGAAATGCTT+TGG - chr7_1:17089372-17089391 Msa1012020:intron 35.0%
AAGGGAGAAAGTTTGATTGA+TGG - chr7_1:17089493-17089512 Msa1012020:CDS 35.0%
!! CTTTTTGAAGGAGCTTAAGA+TGG - chr7_1:17089549-17089568 Msa1012020:CDS 35.0%
GCTATGAATAAGATCGACAA+AGG - chr7_1:17089583-17089602 Msa1012020:CDS 35.0%
!! TTGCTTTTACTGGAACTCAA+AGG - chr7_1:17087614-17087633 Msa1012020:CDS 35.0%
! TTTTACTGGAACTCAAAGGT+TGG - chr7_1:17087618-17087637 Msa1012020:CDS 35.0%
! GTTAGAGGAAGCTTGATTTT+TGG + chr7_1:17087656-17087675 None:intergenic 35.0%
TGAATTACCAAAGACAGTGT+TGG + chr7_1:17087683-17087702 None:intergenic 35.0%
CTGTATTTCACAACGATCAT+CGG + chr7_1:17088068-17088087 None:intergenic 35.0%
GATGATCGTTGTGAAATACA+GGG - chr7_1:17088067-17088086 Msa1012020:CDS 35.0%
ATGATCGTTGTGAAATACAG+GGG - chr7_1:17088068-17088087 Msa1012020:CDS 35.0%
!!! AGAGATTGCAGAAGCATTTT+TGG - chr7_1:17088148-17088167 Msa1012020:CDS 35.0%
! ATTTTCATCTTTGATCTCGG+TGG - chr7_1:17088353-17088372 Msa1012020:CDS 35.0%
! GGATAATGTCTTTCAAGTCA+AGG - chr7_1:17088409-17088428 Msa1012020:CDS 35.0%
! AGAGGACTTTGATAACAGAA+TGG - chr7_1:17088460-17088479 Msa1012020:CDS 35.0%
! AAGAACCAAGTTGACATTAG+TGG - chr7_1:17088512-17088531 Msa1012020:CDS 35.0%
! TAGAGCATCTATGTCAATTG+TGG + chr7_1:17088612-17088631 None:intergenic 35.0%
ACTTCTGTTCATCAATCACA+CGG - chr7_1:17088645-17088664 Msa1012020:CDS 35.0%
! TCTCCATACACTTTTCAAAG+AGG + chr7_1:17088697-17088716 None:intergenic 35.0%
GTAGATGATGTAGTCCTTAT+TGG - chr7_1:17088761-17088780 Msa1012020:CDS 35.0%
!! CTTCTAGGATTCCTAAAATG+AGG - chr7_1:17088789-17088808 Msa1012020:CDS 35.0%
CACTAAGAATGTTCCAAACT+TGG - chr7_1:17088919-17088938 Msa1012020:CDS 35.0%
!! TCACTTGGTATCGATACAAA+AGG - chr7_1:17088965-17088984 Msa1012020:CDS 35.0%
!! AATGGTACAGAAGTATTCCT+AGG + chr7_1:17089013-17089032 None:intergenic 35.0%
TATTATACCCCTAAGGTTGA+AGG - chr7_1:17089049-17089068 Msa1012020:CDS 35.0%
TTCATTACCTTCAACCTTAG+GGG + chr7_1:17089059-17089078 None:intergenic 35.0%
AGTTGAAGCAAGAAATGCTT+TGG - chr7_1:17089372-17089391 Msa1012020:intron 35.0%
AAGGGAGAAAGTTTGATTGA+TGG - chr7_1:17089493-17089512 Msa1012020:CDS 35.0%
!! CTTTTTGAAGGAGCTTAAGA+TGG - chr7_1:17089549-17089568 Msa1012020:CDS 35.0%
GCTATGAATAAGATCGACAA+AGG - chr7_1:17089583-17089602 Msa1012020:CDS 35.0%
AAATACGATGGAGTTGCGAT+CGG - chr7_1:17087484-17087503 Msa1012020:CDS 40.0%
GAATGAACAGAACGATAGAG+TGG - chr7_1:17087546-17087565 Msa1012020:CDS 40.0%
AAAAGCAACACAAGAAGGAG+TGG + chr7_1:17087602-17087621 None:intergenic 40.0%
CCAGTAAAAGCAACACAAGA+AGG + chr7_1:17087607-17087626 None:intergenic 40.0%
!!! CCTTCTTGTGTTGCTTTTAC+TGG - chr7_1:17087604-17087623 Msa1012020:CDS 40.0%
!! TACCAAAGACAGTGTTGGTT+GGG + chr7_1:17087678-17087697 None:intergenic 40.0%
!! TTACCAAAGACAGTGTTGGT+TGG + chr7_1:17087679-17087698 None:intergenic 40.0%
TATACTGTTGTGGCCCTTTA+AGG - chr7_1:17088019-17088038 Msa1012020:CDS 40.0%
ACACCAGCAATGACCTTAAA+GGG + chr7_1:17088035-17088054 None:intergenic 40.0%
AACACCAGCAATGACCTTAA+AGG + chr7_1:17088036-17088055 None:intergenic 40.0%
CGATGATCGTTGTGAAATAC+AGG - chr7_1:17088066-17088085 Msa1012020:CDS 40.0%
!!! AGAAGCATTTTTGGAGTCAC+CGG - chr7_1:17088157-17088176 Msa1012020:CDS 40.0%
GTAATCACTGCATTCTCAAC+CGG + chr7_1:17088179-17088198 None:intergenic 40.0%
AATTTCACCTGCATCTTTGG+TGG + chr7_1:17088237-17088256 None:intergenic 40.0%
AGCAATTTCACCTGCATCTT+TGG + chr7_1:17088240-17088259 None:intergenic 40.0%
AAAGATGCAGGTGAAATTGC+TGG - chr7_1:17088239-17088258 Msa1012020:CDS 40.0%
! GGACTTTGATAACAGAATGG+TGG - chr7_1:17088463-17088482 Msa1012020:CDS 40.0%
GTTGCGAAATTCTTGCGAAA+GGG - chr7_1:17088556-17088575 Msa1012020:CDS 40.0%
GACATAGATGCTCTATGTCA+AGG - chr7_1:17088617-17088636 Msa1012020:CDS 40.0%
CTTCTGTTCATCAATCACAC+GGG - chr7_1:17088646-17088665 Msa1012020:CDS 40.0%
! GGACCTCTTTGAAAAGTGTA+TGG - chr7_1:17088691-17088710 Msa1012020:CDS 40.0%
TTGTCTTGCAGATGCTAAGA+TGG - chr7_1:17088727-17088746 Msa1012020:CDS 40.0%
GATGATGTAGTCCTTATTGG+TGG - chr7_1:17088764-17088783 Msa1012020:CDS 40.0%
! TCCTTATTGGTGGTTCTTCT+AGG - chr7_1:17088774-17088793 Msa1012020:CDS 40.0%
TCCTAGAAGAACCACCAATA+AGG + chr7_1:17088778-17088797 None:intergenic 40.0%
!! ACAGGAGTTTTTCAAAGGGA+AGG - chr7_1:17088820-17088839 Msa1012020:CDS 40.0%
ATGTTCCAAACTTGGTACTG+CGG - chr7_1:17088927-17088946 Msa1012020:CDS 40.0%
GATGTTACTCCTTTGTCACT+TGG - chr7_1:17088950-17088969 Msa1012020:CDS 40.0%
! GTATCGATACCAAGTGACAA+AGG + chr7_1:17088962-17088981 None:intergenic 40.0%
TTATGAGTGTGGTGATTCCT+AGG - chr7_1:17088993-17089012 Msa1012020:CDS 40.0%
CAAAGTATACTGTGAGAGGA+AGG + chr7_1:17089183-17089202 None:intergenic 40.0%
TATATTAAGCGTCTCTGCAG+TGG - chr7_1:17089219-17089238 Msa1012020:intron 40.0%
AGAGATTGAGAGAATGATCC+AGG - chr7_1:17089306-17089325 Msa1012020:intron 40.0%
AAATACGATGGAGTTGCGAT+CGG - chr7_1:17087484-17087503 Msa1012020:CDS 40.0%
GAATGAACAGAACGATAGAG+TGG - chr7_1:17087546-17087565 Msa1012020:CDS 40.0%
AAAAGCAACACAAGAAGGAG+TGG + chr7_1:17087602-17087621 None:intergenic 40.0%
CCAGTAAAAGCAACACAAGA+AGG + chr7_1:17087607-17087626 None:intergenic 40.0%
!!! CCTTCTTGTGTTGCTTTTAC+TGG - chr7_1:17087604-17087623 Msa1012020:CDS 40.0%
!! TACCAAAGACAGTGTTGGTT+GGG + chr7_1:17087678-17087697 None:intergenic 40.0%
!! TTACCAAAGACAGTGTTGGT+TGG + chr7_1:17087679-17087698 None:intergenic 40.0%
TATACTGTTGTGGCCCTTTA+AGG - chr7_1:17088019-17088038 Msa1012020:CDS 40.0%
ACACCAGCAATGACCTTAAA+GGG + chr7_1:17088035-17088054 None:intergenic 40.0%
AACACCAGCAATGACCTTAA+AGG + chr7_1:17088036-17088055 None:intergenic 40.0%
CGATGATCGTTGTGAAATAC+AGG - chr7_1:17088066-17088085 Msa1012020:CDS 40.0%
!!! AGAAGCATTTTTGGAGTCAC+CGG - chr7_1:17088157-17088176 Msa1012020:CDS 40.0%
GTAATCACTGCATTCTCAAC+CGG + chr7_1:17088179-17088198 None:intergenic 40.0%
AATTTCACCTGCATCTTTGG+TGG + chr7_1:17088237-17088256 None:intergenic 40.0%
AGCAATTTCACCTGCATCTT+TGG + chr7_1:17088240-17088259 None:intergenic 40.0%
AAAGATGCAGGTGAAATTGC+TGG - chr7_1:17088239-17088258 Msa1012020:CDS 40.0%
! GGACTTTGATAACAGAATGG+TGG - chr7_1:17088463-17088482 Msa1012020:CDS 40.0%
GTTGCGAAATTCTTGCGAAA+GGG - chr7_1:17088556-17088575 Msa1012020:CDS 40.0%
GACATAGATGCTCTATGTCA+AGG - chr7_1:17088617-17088636 Msa1012020:CDS 40.0%
CTTCTGTTCATCAATCACAC+GGG - chr7_1:17088646-17088665 Msa1012020:CDS 40.0%
! GGACCTCTTTGAAAAGTGTA+TGG - chr7_1:17088691-17088710 Msa1012020:CDS 40.0%
TTGTCTTGCAGATGCTAAGA+TGG - chr7_1:17088727-17088746 Msa1012020:CDS 40.0%
GATGATGTAGTCCTTATTGG+TGG - chr7_1:17088764-17088783 Msa1012020:CDS 40.0%
! TCCTTATTGGTGGTTCTTCT+AGG - chr7_1:17088774-17088793 Msa1012020:CDS 40.0%
TCCTAGAAGAACCACCAATA+AGG + chr7_1:17088778-17088797 None:intergenic 40.0%
!! ACAGGAGTTTTTCAAAGGGA+AGG - chr7_1:17088820-17088839 Msa1012020:CDS 40.0%
ATGTTCCAAACTTGGTACTG+CGG - chr7_1:17088927-17088946 Msa1012020:CDS 40.0%
GATGTTACTCCTTTGTCACT+TGG - chr7_1:17088950-17088969 Msa1012020:CDS 40.0%
! GTATCGATACCAAGTGACAA+AGG + chr7_1:17088962-17088981 None:intergenic 40.0%
TTATGAGTGTGGTGATTCCT+AGG - chr7_1:17088993-17089012 Msa1012020:CDS 40.0%
CAAAGTATACTGTGAGAGGA+AGG + chr7_1:17089183-17089202 None:intergenic 40.0%
TATATTAAGCGTCTCTGCAG+TGG - chr7_1:17089219-17089238 Msa1012020:intron 40.0%
AGAGATTGAGAGAATGATCC+AGG - chr7_1:17089306-17089325 Msa1012020:intron 40.0%
CTTACTCTTGCGTTGGAGTA+TGG - chr7_1:17087524-17087543 Msa1012020:CDS 45.0%
! ACTGGAACTCAAAGGTTGGT+TGG - chr7_1:17087622-17087641 Msa1012020:CDS 45.0%
AACCCAACCAACACTGTCTT+TGG - chr7_1:17087673-17087692 Msa1012020:CDS 45.0%
TTCATCTTTGATCTCGGTGG+TGG - chr7_1:17088356-17088375 Msa1012020:CDS 45.0%
! TTTCAAGTCAAGGCCACTTC+TGG - chr7_1:17088419-17088438 Msa1012020:CDS 45.0%
AGAATTTCGCAACCTCCTCA+AGG + chr7_1:17088549-17088568 None:intergenic 45.0%
GGTTGCGAAATTCTTGCGAA+AGG - chr7_1:17088555-17088574 Msa1012020:CDS 45.0%
!! CAAGAGCATTAACCCTGATG+AGG - chr7_1:17088850-17088869 Msa1012020:CDS 45.0%
CATAAGCAACAGCCTCATCA+GGG + chr7_1:17088865-17088884 None:intergenic 45.0%
TGTTCCAAACTTGGTACTGC+GGG - chr7_1:17088928-17088947 Msa1012020:CDS 45.0%
! GCAAGTGAGAACAACTTGCT+TGG - chr7_1:17089121-17089140 Msa1012020:CDS 45.0%
CCTTGAAATTGTCAGCTTCC+TGG + chr7_1:17089327-17089346 None:intergenic 45.0%
CCAGGAAGCTGACAATTTCA+AGG - chr7_1:17089324-17089343 Msa1012020:intron 45.0%
! TTTGATTGATGGCAACCAGC+AGG - chr7_1:17089504-17089523 Msa1012020:CDS 45.0%
CTTACTCTTGCGTTGGAGTA+TGG - chr7_1:17087524-17087543 Msa1012020:CDS 45.0%
! ACTGGAACTCAAAGGTTGGT+TGG - chr7_1:17087622-17087641 Msa1012020:CDS 45.0%
AACCCAACCAACACTGTCTT+TGG - chr7_1:17087673-17087692 Msa1012020:CDS 45.0%
TTCATCTTTGATCTCGGTGG+TGG - chr7_1:17088356-17088375 Msa1012020:CDS 45.0%
! TTTCAAGTCAAGGCCACTTC+TGG - chr7_1:17088419-17088438 Msa1012020:CDS 45.0%
AGAATTTCGCAACCTCCTCA+AGG + chr7_1:17088549-17088568 None:intergenic 45.0%
GGTTGCGAAATTCTTGCGAA+AGG - chr7_1:17088555-17088574 Msa1012020:CDS 45.0%
!! CAAGAGCATTAACCCTGATG+AGG - chr7_1:17088850-17088869 Msa1012020:CDS 45.0%
CATAAGCAACAGCCTCATCA+GGG + chr7_1:17088865-17088884 None:intergenic 45.0%
TGTTCCAAACTTGGTACTGC+GGG - chr7_1:17088928-17088947 Msa1012020:CDS 45.0%
! GCAAGTGAGAACAACTTGCT+TGG - chr7_1:17089121-17089140 Msa1012020:CDS 45.0%
CCTTGAAATTGTCAGCTTCC+TGG + chr7_1:17089327-17089346 None:intergenic 45.0%
CCAGGAAGCTGACAATTTCA+AGG - chr7_1:17089324-17089343 Msa1012020:intron 45.0%
! TTTGATTGATGGCAACCAGC+AGG - chr7_1:17089504-17089523 Msa1012020:CDS 45.0%
!! AAATGAAATTAAATTTAAAA+GGG + chr7_1:17087792-17087811 None:intergenic 5.0%
!! AAAATGAAATTAAATTTAAA+AGG + chr7_1:17087793-17087812 None:intergenic 5.0%
!! AAATGAAATTAAATTTAAAA+GGG + chr7_1:17087792-17087811 None:intergenic 5.0%
!! AAAATGAAATTAAATTTAAA+AGG + chr7_1:17087793-17087812 None:intergenic 5.0%
GTTGCGATCGGAATTGACCT+TGG - chr7_1:17087496-17087515 Msa1012020:CDS 50.0%
CGCAAGAGTAAGTCGTTCCA+AGG + chr7_1:17087516-17087535 None:intergenic 50.0%
GGAACGACTTACTCTTGCGT+TGG - chr7_1:17087517-17087536 Msa1012020:CDS 50.0%
!! GACAGTGTTGGTTGGGTTAG+AGG + chr7_1:17087671-17087690 None:intergenic 50.0%
!! TGGCCCTTTAAGGTCATTGC+TGG - chr7_1:17088029-17088048 Msa1012020:CDS 50.0%
CGTTGTGAAATACAGGGGCA+AGG - chr7_1:17088073-17088092 Msa1012020:CDS 50.0%
AGAAGAGCCACCAAAGATGC+AGG - chr7_1:17088227-17088246 Msa1012020:CDS 50.0%
TATGCAAGAGCAGCTGCAGT+TGG + chr7_1:17088293-17088312 None:intergenic 50.0%
ACTGCAGCTGCTCTTGCATA+TGG - chr7_1:17088293-17088312 Msa1012020:CDS 50.0%
! ACTTCTGGAGACACACACCT+CGG - chr7_1:17088434-17088453 Msa1012020:CDS 50.0%
TATCAAAGTCCTCTCCTCCG+AGG + chr7_1:17088454-17088473 None:intergenic 50.0%
GGACGCCACTAATGTCAACT+TGG + chr7_1:17088520-17088539 None:intergenic 50.0%
! GCAACCTCCTCAAGGCTTTT+GGG + chr7_1:17088541-17088560 None:intergenic 50.0%
CCATAAGCAACAGCCTCATC+AGG + chr7_1:17088866-17088885 None:intergenic 50.0%
! CCTGATGAGGCTGTTGCTTA+TGG - chr7_1:17088863-17088882 Msa1012020:CDS 50.0%
CTTCACCAAGCAAAACAGCC+TGG + chr7_1:17088898-17088917 None:intergenic 50.0%
ACATCCCGCAGTACCAAGTT+TGG + chr7_1:17088935-17088954 None:intergenic 50.0%
ATACTGTGAGAGGAAGGCCA+CGG + chr7_1:17089177-17089196 None:intergenic 50.0%
TCTGCAGTGGAAGAAACCAG+TGG - chr7_1:17089232-17089251 Msa1012020:intron 50.0%
TGGCAACCAGCAGGAAGATA+CGG - chr7_1:17089513-17089532 Msa1012020:CDS 50.0%
AAACAGCCGTATCTTCCTGC+TGG + chr7_1:17089522-17089541 None:intergenic 50.0%
GTTGCGATCGGAATTGACCT+TGG - chr7_1:17087496-17087515 Msa1012020:CDS 50.0%
CGCAAGAGTAAGTCGTTCCA+AGG + chr7_1:17087516-17087535 None:intergenic 50.0%
GGAACGACTTACTCTTGCGT+TGG - chr7_1:17087517-17087536 Msa1012020:CDS 50.0%
!! GACAGTGTTGGTTGGGTTAG+AGG + chr7_1:17087671-17087690 None:intergenic 50.0%
!! TGGCCCTTTAAGGTCATTGC+TGG - chr7_1:17088029-17088048 Msa1012020:CDS 50.0%
CGTTGTGAAATACAGGGGCA+AGG - chr7_1:17088073-17088092 Msa1012020:CDS 50.0%
AGAAGAGCCACCAAAGATGC+AGG - chr7_1:17088227-17088246 Msa1012020:CDS 50.0%
TATGCAAGAGCAGCTGCAGT+TGG + chr7_1:17088293-17088312 None:intergenic 50.0%
ACTGCAGCTGCTCTTGCATA+TGG - chr7_1:17088293-17088312 Msa1012020:CDS 50.0%
! ACTTCTGGAGACACACACCT+CGG - chr7_1:17088434-17088453 Msa1012020:CDS 50.0%
TATCAAAGTCCTCTCCTCCG+AGG + chr7_1:17088454-17088473 None:intergenic 50.0%
GGACGCCACTAATGTCAACT+TGG + chr7_1:17088520-17088539 None:intergenic 50.0%
! GCAACCTCCTCAAGGCTTTT+GGG + chr7_1:17088541-17088560 None:intergenic 50.0%
CCATAAGCAACAGCCTCATC+AGG + chr7_1:17088866-17088885 None:intergenic 50.0%
! CCTGATGAGGCTGTTGCTTA+TGG - chr7_1:17088863-17088882 Msa1012020:CDS 50.0%
CTTCACCAAGCAAAACAGCC+TGG + chr7_1:17088898-17088917 None:intergenic 50.0%
ACATCCCGCAGTACCAAGTT+TGG + chr7_1:17088935-17088954 None:intergenic 50.0%
ATACTGTGAGAGGAAGGCCA+CGG + chr7_1:17089177-17089196 None:intergenic 50.0%
TCTGCAGTGGAAGAAACCAG+TGG - chr7_1:17089232-17089251 Msa1012020:intron 50.0%
TGGCAACCAGCAGGAAGATA+CGG - chr7_1:17089513-17089532 Msa1012020:CDS 50.0%
AAACAGCCGTATCTTCCTGC+TGG + chr7_1:17089522-17089541 None:intergenic 50.0%
GAGGTGTGTGTCTCCAGAAG+TGG + chr7_1:17088435-17088454 None:intergenic 55.0%
! CGCAACCTCCTCAAGGCTTT+TGG + chr7_1:17088542-17088561 None:intergenic 55.0%
TGCTTATGGTGCAGCTGTCC+AGG - chr7_1:17088877-17088896 Msa1012020:CDS 55.0%
!! GCTGTCCAGGCTGTTTTGCT+TGG - chr7_1:17088890-17088909 Msa1012020:CDS 55.0%
AAAGTTCCTCTTGCTCCCCG+TGG - chr7_1:17089157-17089176 Msa1012020:intron 55.0%
TACTGTGAGAGGAAGGCCAC+GGG + chr7_1:17089176-17089195 None:intergenic 55.0%
GAGGTGTGTGTCTCCAGAAG+TGG + chr7_1:17088435-17088454 None:intergenic 55.0%
! CGCAACCTCCTCAAGGCTTT+TGG + chr7_1:17088542-17088561 None:intergenic 55.0%
TGCTTATGGTGCAGCTGTCC+AGG - chr7_1:17088877-17088896 Msa1012020:CDS 55.0%
!! GCTGTCCAGGCTGTTTTGCT+TGG - chr7_1:17088890-17088909 Msa1012020:CDS 55.0%
AAAGTTCCTCTTGCTCCCCG+TGG - chr7_1:17089157-17089176 Msa1012020:intron 55.0%
TACTGTGAGAGGAAGGCCAC+GGG + chr7_1:17089176-17089195 None:intergenic 55.0%
TCTGGAGACACACACCTCGG+AGG - chr7_1:17088437-17088456 Msa1012020:CDS 60.0%
AGACACACACCTCGGAGGAG+AGG - chr7_1:17088442-17088461 Msa1012020:CDS 60.0%
GTGGCGTCCCAAAAGCCTTG+AGG - chr7_1:17088531-17088550 Msa1012020:CDS 60.0%
GCGTCCCAAAAGCCTTGAGG+AGG - chr7_1:17088534-17088553 Msa1012020:CDS 60.0%
ACTGTGAGAGGAAGGCCACG+GGG + chr7_1:17089175-17089194 None:intergenic 60.0%
TCTGGAGACACACACCTCGG+AGG - chr7_1:17088437-17088456 Msa1012020:CDS 60.0%
AGACACACACCTCGGAGGAG+AGG - chr7_1:17088442-17088461 Msa1012020:CDS 60.0%
GTGGCGTCCCAAAAGCCTTG+AGG - chr7_1:17088531-17088550 Msa1012020:CDS 60.0%
GCGTCCCAAAAGCCTTGAGG+AGG - chr7_1:17088534-17088553 Msa1012020:CDS 60.0%
ACTGTGAGAGGAAGGCCACG+GGG + chr7_1:17089175-17089194 None:intergenic 60.0%
GGAAGGCCACGGGGAGCAAG+AGG + chr7_1:17089166-17089185 None:intergenic 70.0%
GGAAGGCCACGGGGAGCAAG+AGG + chr7_1:17089166-17089185 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 17087475 17089639 17087475 ID=Msa1012020;Name=Msa1012020
chr7_1 mRNA 17087475 17089639 17087475 ID=Msa1012020-mRNA-1;Parent=Msa1012020;Name=Msa1012020-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0|0|1|1|1|2|0|630
chr7_1 exon 17089420 17089639 17089420 ID=Msa1012020-mRNA-1:exon:4299;Parent=Msa1012020-mRNA-1
chr7_1 exon 17087475 17089147 17087475 ID=Msa1012020-mRNA-1:exon:4298;Parent=Msa1012020-mRNA-1
chr7_1 CDS 17089420 17089639 17089420 ID=Msa1012020-mRNA-1:cds;Parent=Msa1012020-mRNA-1
chr7_1 CDS 17087475 17089147 17087475 ID=Msa1012020-mRNA-1:cds;Parent=Msa1012020-mRNA-1
Gene Sequence

>Msa1012020

ATGGAAGAAAAATACGATGGAGTTGCGATCGGAATTGACCTTGGAACGACTTACTCTTGCGTTGGAGTATGGAATGAACAGAACGATAGAGTGGAAATCATACACAATGATCAAGGAAACAAAACCACTCCTTCTTGTGTTGCTTTTACTGGAACTCAAAGGTTGGTTGGTGATGCTGCCAAAAATCAAGCTTCCTCTAACCCAACCAACACTGTCTTTGATGCAAAGAGGTTAATTGCAAGAAAATACAGTGATTCCATAGTTCAGAATGATATACTGTTGTGGCCCTTTAAGGTCATTGCTGGTGTTGATGACAAACCGATGATCGTTGTGAAATACAGGGGCAAGGAAAAGCATCTTGTTCCCGAAGAAATATCAGCTATGATTCTCACACAGATGCGAGAGATTGCAGAAGCATTTTTGGAGTCACCGGTTGAGAATGCAGTGATTACCGTACCTGCTTATTTTAATGATTCTCAAAGAAGAGCCACCAAAGATGCAGGTGAAATTGCTGGTCTTAATGTAATGCAGATAATCAATGAACCAACTGCAGCTGCTCTTGCATATGGACTTCAAAAGAGATCTAATTGTGTTGAAGAGAGAAATATTTTCATCTTTGATCTCGGTGGTGGAACTTTTGATGTTTCTCTTCTCACAATTAAGGATAATGTCTTTCAAGTCAAGGCCACTTCTGGAGACACACACCTCGGAGGAGAGGACTTTGATAACAGAATGGTGGAACACTTTGTGAAAGAGTTTGAAAGGAAGAACCAAGTTGACATTAGTGGCGTCCCAAAAGCCTTGAGGAGGTTGCGAAATTCTTGCGAAAGGGCAAAAAGAGAACTTTCTTATATCAATAAGGCCACAATTGACATAGATGCTCTATGTCAAGGAATTGACTTCTGTTCATCAATCACACGGGCTAAGTTTGAGCAACTGAATATGGACCTCTTTGAAAAGTGTATGGAGATTGTTAAGAGTTGTCTTGCAGATGCTAAGATGGACAAGAGTTGTGTAGATGATGTAGTCCTTATTGGTGGTTCTTCTAGGATTCCTAAAATGAGGCAGTTATTACAGGAGTTTTTCAAAGGGAAGGAATTATGCAAGAGCATTAACCCTGATGAGGCTGTTGCTTATGGTGCAGCTGTCCAGGCTGTTTTGCTTGGTGAAGACACTAAGAATGTTCCAAACTTGGTACTGCGGGATGTTACTCCTTTGTCACTTGGTATCGATACAAAAGGAGATATTATGAGTGTGGTGATTCCTAGGAATACTTCTGTACCATTCAAGAAGACACAAGTTTATTATACCCCTAAGGTTGAAGGTAATGAATTTTTAGTTGATATTATGGTTTATGAGGGTGAGAGAATTGTTGCAAGTGAGAACAACTTGCTTGGTTTGTTTGATCTCAAAGTTCCTCTTGCTCCCCGTGGCCTTCCTCTCACAGTATACTTTGATATAGATGCTAATGGTATATTAAGCGTCTCTGCAGTGGAAGAAACCAGTGGCAATAAAAATGAAATTACAATAACTAATGAAAATGGAAGATTATCAAGGGAAGAGATTGAGAGAATGATCCAGGAAGCTGACAATTTCAAGGCTGAAGACATGAAGTTCAAAATGAAAGTTGAAGCAAGAAATGCTTTGGAAGATTATCTTTACGAAATGAGAAAAAAAATGAAGAATGATAGTGTTAGTTCAAAGCTCGACCGTGTAGACAAAGAGAAGATTTATTCTGCAATGATAAAGGGAGAAAGTTTGATTGATGGCAACCAGCAGGAAGATACGGCTGTTTTTGTAAACTTTTTGAAGGAGCTTAAGATGGTCTTTGAAGCTGCTATGAATAAGATCGACAAAGGTTGCTCAGATGTTGAAATGATTATGATTGATTAA
Protein sequence

>Msa1012020

MEEKYDGVAIGIDLGTTYSCVGVWNEQNDRVEIIHNDQGNKTTPSCVAFTGTQRLVGDAAKNQASSNPTNTVFDAKRLIARKYSDSIVQNDILLWPFKVIAGVDDKPMIVVKYRGKEKHLVPEEISAMILTQMREIAEAFLESPVENAVITVPAYFNDSQRRATKDAGEIAGLNVMQIINEPTAAALAYGLQKRSNCVEERNIFIFDLGGGTFDVSLLTIKDNVFQVKATSGDTHLGGEDFDNRMVEHFVKEFERKNQVDISGVPKALRRLRNSCERAKRELSYINKATIDIDALCQGIDFCSSITRAKFEQLNMDLFEKCMEIVKSCLADAKMDKSCVDDVVLIGGSSRIPKMRQLLQEFFKGKELCKSINPDEAVAYGAAVQAVLLGEDTKNVPNLVLRDVTPLSLGIDTKGDIMSVVIPRNTSVPFKKTQVYYTPKVEGNEFLVDIMVYEGERIVASENNLLGLFDLKVPLAPRGLPLTVYFDIDANGILSVSAVEETSGNKNEITITNENGRLSREEIERMIQEADNFKAEDMKFKMKVEARNALEDYLYEMRKKMKNDSVSSKLDRVDKEKIYSAMIKGESLIDGNQQEDTAVFVNFLKELKMVFEAAMNKIDKGCSDVEMIMID*