AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1060580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1060580 MtrunA17_Chr7g0238171 64.030 531 97 7 1 447 1 521 0.0 632
Msa1060580 MtrunA17_Chr7g0238191 73.742 457 94 8 1 447 1 441 0.0 615
Msa1060580 MtrunA17_Chr7g0238241 69.280 472 115 5 1 446 1 468 0.0 608
Msa1060580 MtrunA17_Chr7g0238141 71.150 461 107 7 1 447 1 449 0.0 587
Msa1060580 MtrunA17_Chr7g0238231 61.818 495 138 7 1 447 1 492 0.0 573
Msa1060580 MtrunA17_Chr7g0238511 61.978 455 148 8 1 447 1 438 0.0 540
Msa1060580 MtrunA17_Chr7g0238101 59.588 485 152 9 1 446 1 480 0.0 529
Msa1060580 MtrunA17_Chr7g0238111 58.824 459 151 8 1 447 1 433 3.54e-176 500
Msa1060580 MtrunA17_Chr7g0238131 62.470 421 131 6 50 447 1 417 1.09e-173 493
Msa1060580 MtrunA17_Chr7g0238251 53.937 508 157 11 1 447 1 492 5.57e-153 443
Msa1060580 MtrunA17_Chr7g0238181 58.824 391 110 6 72 447 2 356 6.11e-149 428
Msa1060580 MtrunA17_Chr7g0238151 70.155 258 72 3 2 257 1 255 8.75e-119 347
Msa1060580 MtrunA17_Chr7g0232531 68.302 265 71 7 1 257 1 260 1.70e-105 313
Msa1060580 MtrunA17_Chr7g0238291 64.751 261 86 5 1 259 1 257 9.96e-99 296
Msa1060580 MtrunA17_Chr7g0238281 78.771 179 38 0 265 443 3 181 1.06e-90 273
Msa1060580 MtrunA17_Chr7g0238031 66.383 235 73 4 2 235 1 230 4.21e-89 281
Msa1060580 MtrunA17_Chr7g0238201 74.033 181 47 0 1 181 1 181 5.47e-89 268
Msa1060580 MtrunA17_Chr7g0238071 71.728 191 51 1 1 191 1 188 2.70e-88 268
Msa1060580 MtrunA17_Chr8g0354591 37.603 484 229 13 7 443 1 458 7.18e-88 275
Msa1060580 MtrunA17_Chr8g0352511 35.625 480 262 11 2 443 1 471 3.70e-84 266
Msa1060580 MtrunA17_Chr7g0238051 50.000 302 93 5 201 447 69 367 8.83e-84 261
Msa1060580 MtrunA17_Chr7g0238091 62.255 204 73 2 248 447 18 221 2.24e-79 245
Msa1060580 MtrunA17_Chr8g0354581 34.702 487 250 11 7 445 1 467 3.40e-74 240
Msa1060580 MtrunA17_Chr7g0238081 59.783 184 65 2 265 447 2 177 2.89e-70 220
Msa1060580 MtrunA17_Chr7g0232521 66.857 175 57 1 265 438 39 213 2.03e-69 219
Msa1060580 MtrunA17_Chr7g0238211 63.587 184 66 1 265 447 2 185 3.10e-69 218
Msa1060580 MtrunA17_Chr7g0238021 60.638 188 61 4 72 251 2 184 1.84e-68 216
Msa1060580 MtrunA17_Chr1g0170061 46.766 201 78 7 1 199 1 174 1.29e-42 151
Msa1060580 MtrunA17_Chr8g0352491 44.022 184 87 3 276 443 2 185 5.29e-42 147
Msa1060580 MtrunA17_Chr8g0354621 49.324 148 61 2 310 443 5 152 2.93e-38 136
Msa1060580 MtrunA17_Chr5g0439641 27.918 437 238 13 45 442 49 447 1.16e-33 131
Msa1060580 MtrunA17_Chr8g0354611 31.418 261 134 7 7 255 1 228 8.29e-30 116
Msa1060580 MtrunA17_Chr5g0401791 28.270 474 279 18 6 444 81 528 1.39e-29 120
Msa1060580 MtrunA17_Chr5g0439721 28.029 421 247 14 43 442 47 432 3.15e-29 119
Msa1060580 MtrunA17_Chr5g0439681 37.989 179 101 6 268 442 136 308 3.54e-27 110
Msa1060580 MtrunA17_Chr8g0334971 26.859 417 251 13 45 434 44 433 5.23e-27 112
Msa1060580 MtrunA17_Chr8g0352501 43.165 139 62 4 49 179 7 136 7.40e-26 105
Msa1060580 MtrunA17_Chr8g0335061 26.471 408 263 13 45 434 44 432 1.13e-25 108
Msa1060580 MtrunA17_Chr3g0118601 25.056 443 297 14 16 444 30 451 2.89e-24 104
Msa1060580 MtrunA17_Chr8g0334951 27.225 382 221 13 45 399 46 397 1.03e-23 102
Msa1060580 MtrunA17_Chr8g0334911 27.720 386 212 11 45 399 45 394 2.54e-23 101
Msa1060580 MtrunA17_Chr2g0297831 25.727 447 279 17 11 439 50 461 3.78e-22 99.0
Msa1060580 MtrunA17_Chr8g0335071 24.890 454 292 15 7 432 18 450 4.77e-22 98.2
Msa1060580 MtrunA17_Chr5g0440401 34.831 178 109 4 268 443 43 215 8.18e-22 93.6
Msa1060580 MtrunA17_Chr7g0265891 25.160 469 274 19 9 443 26 451 5.87e-21 95.1
Msa1060580 MtrunA17_Chr8g0335021 24.306 432 267 12 45 439 44 452 5.95e-20 92.0
Msa1060580 MtrunA17_Chr8g0335011 25.330 454 264 16 45 437 53 492 4.53e-19 89.7
Msa1060580 MtrunA17_Chr6g0452551 25.386 453 287 16 2 447 1 409 1.14e-18 87.8
Msa1060580 MtrunA17_Chr6g0452591 26.699 412 245 16 45 442 72 440 1.30e-18 87.8
Msa1060580 MtrunA17_Chr6g0452501 24.229 454 287 12 2 442 1 410 3.47e-18 86.3
Msa1060580 MtrunA17_Chr6g0452161 26.087 414 259 14 43 442 40 420 3.87e-17 83.2
Msa1060580 MtrunA17_Chr6g0452611 26.500 400 254 12 45 439 41 405 2.48e-16 80.5
Msa1060580 MtrunA17_Chr2g0296801 26.351 296 178 8 160 447 90 353 3.55e-16 79.7
Msa1060580 MtrunA17_Chr2g0297821 29.121 182 119 6 270 444 5 183 2.19e-15 74.3
Msa1060580 MtrunA17_Chr6g0457371 24.229 454 282 14 2 442 1 405 4.17e-15 77.0
Msa1060580 MtrunA17_Chr6g0452561 24.524 420 265 17 45 447 42 426 1.30e-14 75.5
Msa1060580 MtrunA17_Chr8g0354871 29.319 191 115 6 265 442 198 381 4.35e-12 67.4
Msa1060580 MtrunA17_Chr4g0002901 32.353 170 99 6 288 447 392 555 6.98e-12 67.4
Msa1060580 MtrunA17_Chr6g0452571 27.018 285 181 10 163 442 86 348 3.44e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1060580 AT3G50120.1 26.271 472 292 15 6 447 83 528 9.78e-31 124
Msa1060580 AT3G50180.1 26.013 469 273 17 6 444 158 582 8.84e-30 122
Msa1060580 AT5G11290.2 26.173 405 257 9 45 442 50 419 1.28e-29 120
Msa1060580 AT3G50170.1 26.338 467 296 15 6 447 93 536 1.30e-28 118
Msa1060580 AT3G50150.1 26.351 444 252 16 40 447 102 506 2.31e-28 117
Msa1060580 AT3G50160.1 26.179 424 250 11 43 447 119 498 3.05e-27 114
Msa1060580 AT4G31980.1 26.420 405 254 11 45 442 310 677 8.02e-27 114
Msa1060580 AT3G50140.1 26.941 438 254 16 45 447 130 536 2.47e-26 112
Msa1060580 AT5G22540.1 26.353 425 252 13 43 444 46 432 4.09e-25 107
Msa1060580 AT3G50130.1 28.051 467 279 19 6 443 119 557 4.69e-25 108
Msa1060580 AT3G47200.1 26.824 425 260 15 43 444 61 457 3.35e-24 105
Msa1060580 AT3G47200.2 26.824 425 260 15 43 444 61 457 3.35e-24 105
Msa1060580 AT3G44710.1 25.109 458 261 14 45 444 65 498 2.28e-23 102
Msa1060580 AT5G22550.2 27.051 451 255 21 43 444 59 484 8.00e-23 101
Msa1060580 AT2G36430.1 25.178 421 264 11 42 445 59 445 1.78e-21 97.1
Msa1060580 AT5G11290.1 25.000 384 246 9 66 442 2 350 1.90e-21 95.5
Msa1060580 AT3G47250.3 24.419 430 266 19 43 444 76 474 5.44e-20 92.8
Msa1060580 AT3G47250.2 24.419 430 266 19 43 444 76 474 5.44e-20 92.8
Msa1060580 AT3G47250.1 24.419 430 266 19 43 444 76 474 5.44e-20 92.8
Msa1060580 AT2G28580.6 25.918 463 285 20 3 442 20 447 2.72e-17 84.3
Msa1060580 AT2G28580.1 26.233 446 270 20 23 442 103 515 3.24e-17 84.3
Msa1060580 AT2G28580.2 26.233 446 270 20 23 442 117 529 3.86e-17 84.3
Msa1060580 AT1G67150.4 25.561 446 270 17 23 447 3 407 2.14e-16 81.3
Msa1060580 AT1G67150.1 25.561 446 270 17 23 447 3 407 2.14e-16 81.3
Msa1060580 AT2G28580.4 24.299 428 284 14 23 442 117 512 1.08e-15 79.7
Msa1060580 AT2G28580.5 23.888 427 287 13 23 442 103 498 1.16e-15 79.7
Msa1060580 AT2G44930.1 23.235 439 252 16 45 442 101 495 1.63e-15 79.0
Msa1060580 AT1G67150.2 27.526 287 180 8 163 447 151 411 4.31e-15 77.4
Msa1060580 AT3G60470.1 30.058 173 112 4 273 442 368 534 3.04e-14 75.1
Msa1060580 AT3G47210.1 25.064 391 207 11 45 399 110 450 3.09e-14 75.1
Msa1060580 AT1G67150.3 31.073 177 115 4 273 447 193 364 1.09e-13 72.8

Find 98 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTTCTTATGTATCTTTAA+TGG 0.170269 7_2:+49061359 Msa1060580:CDS
CTATGCTCTCCTTCTCCTTT+TGG 0.182562 7_2:-49060668 None:intergenic
CCGCAGAAAGATACCAAATT+TGG 0.188370 7_2:+49060115 Msa1060580:CDS
AATTCCTCGAACATCATTAT+TGG 0.238834 7_2:+49060600 Msa1060580:CDS
TTGTAGTACTTCCCCAAATT+TGG 0.241897 7_2:-49060128 None:intergenic
TATGGCATTCATCACTTCTT+TGG 0.246356 7_2:+49061730 Msa1060580:three_prime_UTR
CACTTCTTTGGATTCTTAAT+AGG 0.249526 7_2:+49061742 Msa1060580:three_prime_UTR
CTCAATTCCTTCACATCTTC+AGG 0.253403 7_2:-49061399 None:intergenic
TATCTTGGGTCGTGAACTTT+CGG 0.259672 7_2:-49060075 None:intergenic
ATCTTGGGTCGTGAACTTTC+GGG 0.268704 7_2:-49060074 None:intergenic
AAAATGCGGATTATATATTA+TGG 0.276553 7_2:-49059931 None:intergenic
GGCTGATCAACTTGTTCTTC+TGG 0.284206 7_2:+49060472 Msa1060580:CDS
AAGTTGTTCACATCGATCTT+AGG 0.305648 7_2:-49061267 None:intergenic
TTTCATTCAGACATTGTTTA+CGG 0.306148 7_2:+49061656 Msa1060580:CDS
GTGCCCTGGGTCGCCACGCC+TGG 0.316731 7_2:-49060438 None:intergenic
CGCAGAAAGATACCAAATTT+GGG 0.320288 7_2:+49060116 Msa1060580:CDS
TCATAGTCGTTCTCAAAATC+TGG 0.352290 7_2:-49061333 None:intergenic
GTGCAAGCCGATTACATATA+GGG 0.354282 7_2:+49061137 Msa1060580:CDS
GTGAAGGAATTGAGATCAAA+AGG 0.357359 7_2:+49061408 Msa1060580:CDS
TCAACATATTTGTCGATGTT+AGG 0.359936 7_2:-49061501 None:intergenic
CCCAGGGCACATGAATATTA+AGG 0.368505 7_2:+49060451 Msa1060580:CDS
TCATTCATTCAATATACTAA+TGG 0.369947 7_2:-49059995 None:intergenic
AGATCTACGTGTTACTCTAT+TGG 0.377217 7_2:+49061907 Msa1060580:three_prime_UTR
ATTCCTCGAACATCATTATT+GGG 0.379099 7_2:+49060601 Msa1060580:CDS
CGAAAGTCTCTTGAAGGCTT+TGG 0.387051 7_2:+49060344 Msa1060580:CDS
GACACATCTCATATGCTATC+AGG 0.391502 7_2:-49061311 None:intergenic
AAAGCCAGGCGTGGCGACCC+AGG 0.399801 7_2:+49060434 Msa1060580:CDS
ATGTTCTTTGCTGCATATCT+TGG 0.408587 7_2:+49060409 Msa1060580:CDS
TGTTCTTCTGGTGGTGGATG+TGG 0.408757 7_2:+49060484 Msa1060580:CDS
TCAACTCGAAAGTCTCTTGA+AGG 0.417411 7_2:+49060338 Msa1060580:CDS
TTATCTGACTGTGACTCATC+TGG 0.421692 7_2:-49060629 None:intergenic
TCTATGCCCCTATATGTAAT+CGG 0.436295 7_2:-49061144 None:intergenic
AATGCTCACGTAATTTCTCT+TGG 0.436868 7_2:-49061527 None:intergenic
GCCTTAATATTCATGTGCCC+TGG 0.438484 7_2:-49060452 None:intergenic
AGTGCAAGCCGATTACATAT+AGG 0.440199 7_2:+49061136 Msa1060580:CDS
GCACTTACTTCAACAATCCT+TGG 0.450547 7_2:+49061589 Msa1060580:CDS
AAACCCAAGTTGGTGTCAAT+AGG 0.471075 7_2:+49060149 Msa1060580:CDS
AGGTACCAAGTCTGTGCCTA+TGG 0.471665 7_2:-49061481 None:intergenic
TCAACTTGTTCTTCTGGTGG+TGG 0.471970 7_2:+49060478 Msa1060580:CDS
ATTGTATTGTACCTTGGACT+TGG 0.474271 7_2:-49060774 None:intergenic
TCGTGGATGTTGTTCGTGGA+TGG 0.483877 7_2:+49060386 Msa1060580:CDS
ATGAAGTACTTAAGCTATTG+TGG 0.484153 7_2:+49060531 Msa1060580:CDS
AATAGCTTAAGTACTTCATA+AGG 0.489300 7_2:-49060527 None:intergenic
TAGATAAAGGTGTGAGTGCA+TGG 0.493428 7_2:+49059882 None:intergenic
TACAAGACATGGATAGCGTT+GGG 0.497644 7_2:+49061561 Msa1060580:CDS
AGGACCTATTGACACCAACT+TGG 0.498329 7_2:-49060153 None:intergenic
AACTACCTCATCACTCCAAA+AGG 0.501190 7_2:-49061442 None:intergenic
GACATTGTTTACGGTTCACT+CGG 0.504338 7_2:+49061665 Msa1060580:CDS
GCCTATGGTATTGAAAAGAT+TGG 0.508761 7_2:-49061466 None:intergenic
TGCAGCAAGGAATGCAATAA+CGG 0.510768 7_2:-49061613 None:intergenic
CAGAAGATCAAGAAGATGAG+TGG 0.517045 7_2:-49060729 None:intergenic
CAATACCATAGGCACAGACT+TGG 0.518743 7_2:+49061476 Msa1060580:CDS
TGAAGGAATTGAGATCAAAA+GGG 0.519868 7_2:+49061409 Msa1060580:CDS
TGCATATCTTGGAGAAAGCC+AGG 0.525953 7_2:+49060420 Msa1060580:CDS
TTCACTCGGCTTGCAAATGA+AGG 0.529124 7_2:+49061679 Msa1060580:CDS
TCAGAGAAAACTATGTCTGT+TGG 0.532878 7_2:-49061216 None:intergenic
AAGCCAGGCGTGGCGACCCA+GGG 0.533741 7_2:+49060435 Msa1060580:CDS
CCTTAATATTCATGTGCCCT+GGG 0.534807 7_2:-49060451 None:intergenic
AGATGAGTCACAGTCAGATA+AGG 0.537618 7_2:+49060631 Msa1060580:CDS
GAGAAGGTCATGGTTCCAAA+AGG 0.543574 7_2:+49060653 Msa1060580:CDS
TTAGTATATTGAATGAATGA+TGG 0.546218 7_2:+49059998 Msa1060580:exon
TGATAACATCGATAAACTGA+AGG 0.550997 7_2:+49060289 Msa1060580:CDS
TATCAGGTTGAGTAAAGTAC+AGG 0.561957 7_2:-49061295 None:intergenic
TTCACGACCCAAGATACAAA+AGG 0.563783 7_2:+49060082 Msa1060580:CDS
GGACCTATTGACACCAACTT+GGG 0.564756 7_2:-49060152 None:intergenic
TGATCAACTTGTTCTTCTGG+TGG 0.568104 7_2:+49060475 Msa1060580:CDS
ATACAAGACATGGATAGCGT+TGG 0.568756 7_2:+49061560 Msa1060580:CDS
CGAAATTATGAATCAAAATG+CGG 0.571306 7_2:-49059945 None:intergenic
CCAAATTTGGTATCTTTCTG+CGG 0.571739 7_2:-49060115 None:intergenic
ATAGAAGATCTAAAAGCAGT+AGG 0.576465 7_2:+49061162 Msa1060580:CDS
CGACCATCCTGAAGATGTGA+AGG 0.581217 7_2:+49061392 Msa1060580:CDS
AGGAATGCAATAACGGTCCA+AGG 0.588287 7_2:-49061606 None:intergenic
TCTGAATGAAAGTAAGAGCA+AGG 0.592822 7_2:-49061644 None:intergenic
TGGCCCAATAATGATGTTCG+AGG 0.593043 7_2:-49060604 None:intergenic
GAAGTACTACAAACCCAAGT+TGG 0.601894 7_2:+49060139 Msa1060580:CDS
ATTCCTTCACATCTTCAGGA+TGG 0.602075 7_2:-49061395 None:intergenic
GAGAGAAGTACAAGCTTACG+TGG 0.615150 7_2:+49060207 Msa1060580:CDS
ACTCGGCTTGCAAATGAAGG+TGG 0.618290 7_2:+49061682 Msa1060580:exon
GCTGTCGTGGATGTTGTTCG+TGG 0.618355 7_2:+49060382 Msa1060580:CDS
TGCAAGCCGATTACATATAG+GGG 0.620718 7_2:+49061138 Msa1060580:CDS
GCCTTGAAGAAAAGCTGTCG+TGG 0.621035 7_2:+49060369 Msa1060580:CDS
GTCACAGTCAGATAAGGAGA+AGG 0.621365 7_2:+49060637 Msa1060580:CDS
ACTTTAATAAATACAAGACA+TGG 0.623231 7_2:+49061550 Msa1060580:CDS
GTCATGGTTCCAAAAGGAGA+AGG 0.623505 7_2:+49060659 Msa1060580:CDS
AGAAGATCAAGAAGATGAGT+GGG 0.624508 7_2:-49060728 None:intergenic
GTCAGATAAGGAGAAGGTCA+TGG 0.628406 7_2:+49060643 Msa1060580:CDS
CCTCACTACATCCAAGTCCA+AGG 0.640385 7_2:+49060763 Msa1060580:CDS
TGACTGTGACTCATCTGGTG+TGG 0.642386 7_2:-49060624 None:intergenic
CCTTGGACTTGGATGTAGTG+AGG 0.643268 7_2:-49060763 None:intergenic
CTGAATGAAAGTAAGAGCAA+GGG 0.649353 7_2:-49061643 None:intergenic
GATAACATCGATAAACTGAA+GGG 0.653809 7_2:+49060290 Msa1060580:CDS
AAACAACAAACTTAATCCAG+AGG 0.653888 7_2:+49060247 Msa1060580:CDS
CAAGGGCAATAAATGCAGCA+AGG 0.656895 7_2:-49061626 None:intergenic
ATCTTGGAGAAAGCCAGGCG+TGG 0.668478 7_2:+49060425 Msa1060580:CDS
GCAGAAAGATACCAAATTTG+GGG 0.671150 7_2:+49060117 Msa1060580:CDS
ACATACTCATAGTCAAGACG+TGG 0.689743 7_2:-49061806 None:intergenic
ACGACCCAAGATACAAAAGG+TGG 0.728720 7_2:+49060085 Msa1060580:CDS
AGAGAAGTACAAGCTTACGT+GGG 0.749308 7_2:+49060208 Msa1060580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAAAAAATATTTTAAAAAGG+TGG - chr7_2:49061048-49061067 None:intergenic 15.0%
!!! ACAAAAGTGATTTTTATTAT+TGG + chr7_2:49061071-49061090 Msa1060580:intron 15.0%
!!! GAAAAAATATTTTAAAAAGG+TGG - chr7_2:49061048-49061067 None:intergenic 15.0%
!!! ACAAAAGTGATTTTTATTAT+TGG + chr7_2:49061071-49061090 Msa1060580:intron 15.0%
!!! AAAATGCGGATTATATATTA+TGG - chr7_2:49059934-49059953 None:intergenic 20.0%
!! TCATTCATTCAATATACTAA+TGG - chr7_2:49059998-49060017 None:intergenic 20.0%
!! TTAGTATATTGAATGAATGA+TGG + chr7_2:49059998-49060017 Msa1060580:exon 20.0%
!!! AAGTTTTTCTTCAATAGTTT+GGG - chr7_2:49060027-49060046 None:intergenic 20.0%
!! TTCTGATGAAAATATAGAAA+CGG - chr7_2:49060851-49060870 None:intergenic 20.0%
!!! TGATTTTTATTATTGGACAA+AGG + chr7_2:49061078-49061097 Msa1060580:intron 20.0%
!! TTGTTCTTATGTATCTTTAA+TGG + chr7_2:49061359-49061378 Msa1060580:CDS 20.0%
!! ACTTTAATAAATACAAGACA+TGG + chr7_2:49061550-49061569 Msa1060580:CDS 20.0%
!!! TATAAAGAGTGTTTTTTTCT+TGG + chr7_2:49061837-49061856 Msa1060580:three_prime_UTR 20.0%
!!! AAAATGCGGATTATATATTA+TGG - chr7_2:49059934-49059953 None:intergenic 20.0%
!! TCATTCATTCAATATACTAA+TGG - chr7_2:49059998-49060017 None:intergenic 20.0%
!! TTAGTATATTGAATGAATGA+TGG + chr7_2:49059998-49060017 Msa1060580:exon 20.0%
!!! AAGTTTTTCTTCAATAGTTT+GGG - chr7_2:49060027-49060046 None:intergenic 20.0%
!! TTCTGATGAAAATATAGAAA+CGG - chr7_2:49060851-49060870 None:intergenic 20.0%
!!! TGATTTTTATTATTGGACAA+AGG + chr7_2:49061078-49061097 Msa1060580:intron 20.0%
!! TTGTTCTTATGTATCTTTAA+TGG + chr7_2:49061359-49061378 Msa1060580:CDS 20.0%
!! ACTTTAATAAATACAAGACA+TGG + chr7_2:49061550-49061569 Msa1060580:CDS 20.0%
!!! TATAAAGAGTGTTTTTTTCT+TGG + chr7_2:49061837-49061856 Msa1060580:three_prime_UTR 20.0%
! CGAAATTATGAATCAAAATG+CGG - chr7_2:49059948-49059967 None:intergenic 25.0%
!! CAAGTTTTTCTTCAATAGTT+TGG - chr7_2:49060028-49060047 None:intergenic 25.0%
! AACTATTGAAGAAAAACTTG+TGG + chr7_2:49060028-49060047 Msa1060580:CDS 25.0%
! AATAGCTTAAGTACTTCATA+AGG - chr7_2:49060530-49060549 None:intergenic 25.0%
! TTGTTAATTGTATTGTACCT+TGG - chr7_2:49060783-49060802 None:intergenic 25.0%
!!! TTAACAATAAAAAGCACCTA+AGG + chr7_2:49060796-49060815 Msa1060580:intron 25.0%
!!! TAACAATAAAAAGCACCTAA+GGG + chr7_2:49060797-49060816 Msa1060580:intron 25.0%
!! ATTTGAAACAGTGATTATCT+TGG + chr7_2:49060824-49060843 Msa1060580:intron 25.0%
! TTTCATTCAGACATTGTTTA+CGG + chr7_2:49061656-49061675 Msa1060580:CDS 25.0%
! CGAAATTATGAATCAAAATG+CGG - chr7_2:49059948-49059967 None:intergenic 25.0%
!! CAAGTTTTTCTTCAATAGTT+TGG - chr7_2:49060028-49060047 None:intergenic 25.0%
! AACTATTGAAGAAAAACTTG+TGG + chr7_2:49060028-49060047 Msa1060580:CDS 25.0%
! AATAGCTTAAGTACTTCATA+AGG - chr7_2:49060530-49060549 None:intergenic 25.0%
! TTGTTAATTGTATTGTACCT+TGG - chr7_2:49060783-49060802 None:intergenic 25.0%
!!! TTAACAATAAAAAGCACCTA+AGG + chr7_2:49060796-49060815 Msa1060580:intron 25.0%
!!! TAACAATAAAAAGCACCTAA+GGG + chr7_2:49060797-49060816 Msa1060580:intron 25.0%
!! ATTTGAAACAGTGATTATCT+TGG + chr7_2:49060824-49060843 Msa1060580:intron 25.0%
! TTTCATTCAGACATTGTTTA+CGG + chr7_2:49061656-49061675 Msa1060580:CDS 25.0%
!!! TTTTCATTGTCATGATGGAT+AGG - chr7_2:49060176-49060195 None:intergenic 30.0%
! TCAGATTTTCATTGTCATGA+TGG - chr7_2:49060181-49060200 None:intergenic 30.0%
AAACAACAAACTTAATCCAG+AGG + chr7_2:49060247-49060266 Msa1060580:CDS 30.0%
TGATAACATCGATAAACTGA+AGG + chr7_2:49060289-49060308 Msa1060580:CDS 30.0%
GATAACATCGATAAACTGAA+GGG + chr7_2:49060290-49060309 Msa1060580:CDS 30.0%
! ATGAAGTACTTAAGCTATTG+TGG + chr7_2:49060531-49060550 Msa1060580:CDS 30.0%
AATTCCTCGAACATCATTAT+TGG + chr7_2:49060600-49060619 Msa1060580:CDS 30.0%
ATTCCTCGAACATCATTATT+GGG + chr7_2:49060601-49060620 Msa1060580:CDS 30.0%
ATAGAAGATCTAAAAGCAGT+AGG + chr7_2:49061162-49061181 Msa1060580:CDS 30.0%
TGAAGGAATTGAGATCAAAA+GGG + chr7_2:49061409-49061428 Msa1060580:CDS 30.0%
TCAACATATTTGTCGATGTT+AGG - chr7_2:49061504-49061523 None:intergenic 30.0%
!!! TGACAATGTTGTTTTCGTTA+TGG + chr7_2:49061712-49061731 Msa1060580:three_prime_UTR 30.0%
CACTTCTTTGGATTCTTAAT+AGG + chr7_2:49061742-49061761 Msa1060580:three_prime_UTR 30.0%
!!! TTTTCATTGTCATGATGGAT+AGG - chr7_2:49060176-49060195 None:intergenic 30.0%
! TCAGATTTTCATTGTCATGA+TGG - chr7_2:49060181-49060200 None:intergenic 30.0%
AAACAACAAACTTAATCCAG+AGG + chr7_2:49060247-49060266 Msa1060580:CDS 30.0%
TGATAACATCGATAAACTGA+AGG + chr7_2:49060289-49060308 Msa1060580:CDS 30.0%
GATAACATCGATAAACTGAA+GGG + chr7_2:49060290-49060309 Msa1060580:CDS 30.0%
! ATGAAGTACTTAAGCTATTG+TGG + chr7_2:49060531-49060550 Msa1060580:CDS 30.0%
AATTCCTCGAACATCATTAT+TGG + chr7_2:49060600-49060619 Msa1060580:CDS 30.0%
ATTCCTCGAACATCATTATT+GGG + chr7_2:49060601-49060620 Msa1060580:CDS 30.0%
ATAGAAGATCTAAAAGCAGT+AGG + chr7_2:49061162-49061181 Msa1060580:CDS 30.0%
TGAAGGAATTGAGATCAAAA+GGG + chr7_2:49061409-49061428 Msa1060580:CDS 30.0%
TCAACATATTTGTCGATGTT+AGG - chr7_2:49061504-49061523 None:intergenic 30.0%
!!! TGACAATGTTGTTTTCGTTA+TGG + chr7_2:49061712-49061731 Msa1060580:three_prime_UTR 30.0%
CACTTCTTTGGATTCTTAAT+AGG + chr7_2:49061742-49061761 Msa1060580:three_prime_UTR 30.0%
! TCTACCACCTTTTGTATCTT+GGG - chr7_2:49060092-49060111 None:intergenic 35.0%
! ATCTACCACCTTTTGTATCT+TGG - chr7_2:49060093-49060112 None:intergenic 35.0%
CCAAATTTGGTATCTTTCTG+CGG - chr7_2:49060118-49060137 None:intergenic 35.0%
CGCAGAAAGATACCAAATTT+GGG + chr7_2:49060116-49060135 Msa1060580:CDS 35.0%
GCAGAAAGATACCAAATTTG+GGG + chr7_2:49060117-49060136 Msa1060580:CDS 35.0%
TTGTAGTACTTCCCCAAATT+TGG - chr7_2:49060131-49060150 None:intergenic 35.0%
! ATCTTTTTGTGTAGTTCCTC+TGG - chr7_2:49060266-49060285 None:intergenic 35.0%
ATGTTCTTTGCTGCATATCT+TGG + chr7_2:49060409-49060428 Msa1060580:CDS 35.0%
AGAAGATCAAGAAGATGAGT+GGG - chr7_2:49060731-49060750 None:intergenic 35.0%
ATTGTATTGTACCTTGGACT+TGG - chr7_2:49060777-49060796 None:intergenic 35.0%
TCTATGCCCCTATATGTAAT+CGG - chr7_2:49061147-49061166 None:intergenic 35.0%
TCAGAGAAAACTATGTCTGT+TGG - chr7_2:49061219-49061238 None:intergenic 35.0%
! ACAGACATAGTTTTCTCTGA+AGG + chr7_2:49061219-49061238 Msa1060580:CDS 35.0%
!! ACATAGTTTTCTCTGAAGGA+TGG + chr7_2:49061223-49061242 Msa1060580:CDS 35.0%
AAGTTGTTCACATCGATCTT+AGG - chr7_2:49061270-49061289 None:intergenic 35.0%
!! TATCAGGTTGAGTAAAGTAC+AGG - chr7_2:49061298-49061317 None:intergenic 35.0%
TCATAGTCGTTCTCAAAATC+TGG - chr7_2:49061336-49061355 None:intergenic 35.0%
GTGAAGGAATTGAGATCAAA+AGG + chr7_2:49061408-49061427 Msa1060580:CDS 35.0%
! GCCAATCTTTTCAATACCAT+AGG + chr7_2:49061465-49061484 Msa1060580:CDS 35.0%
! GCCTATGGTATTGAAAAGAT+TGG - chr7_2:49061469-49061488 None:intergenic 35.0%
AATGCTCACGTAATTTCTCT+TGG - chr7_2:49061530-49061549 None:intergenic 35.0%
CTGAATGAAAGTAAGAGCAA+GGG - chr7_2:49061646-49061665 None:intergenic 35.0%
TCTGAATGAAAGTAAGAGCA+AGG - chr7_2:49061647-49061666 None:intergenic 35.0%
TATGGCATTCATCACTTCTT+TGG + chr7_2:49061730-49061749 Msa1060580:three_prime_UTR 35.0%
! AGATCTACGTGTTACTCTAT+TGG + chr7_2:49061907-49061926 Msa1060580:three_prime_UTR 35.0%
! TCTACCACCTTTTGTATCTT+GGG - chr7_2:49060092-49060111 None:intergenic 35.0%
! ATCTACCACCTTTTGTATCT+TGG - chr7_2:49060093-49060112 None:intergenic 35.0%
CCAAATTTGGTATCTTTCTG+CGG - chr7_2:49060118-49060137 None:intergenic 35.0%
CGCAGAAAGATACCAAATTT+GGG + chr7_2:49060116-49060135 Msa1060580:CDS 35.0%
GCAGAAAGATACCAAATTTG+GGG + chr7_2:49060117-49060136 Msa1060580:CDS 35.0%
TTGTAGTACTTCCCCAAATT+TGG - chr7_2:49060131-49060150 None:intergenic 35.0%
! ATCTTTTTGTGTAGTTCCTC+TGG - chr7_2:49060266-49060285 None:intergenic 35.0%
ATGTTCTTTGCTGCATATCT+TGG + chr7_2:49060409-49060428 Msa1060580:CDS 35.0%
AGAAGATCAAGAAGATGAGT+GGG - chr7_2:49060731-49060750 None:intergenic 35.0%
ATTGTATTGTACCTTGGACT+TGG - chr7_2:49060777-49060796 None:intergenic 35.0%
TCTATGCCCCTATATGTAAT+CGG - chr7_2:49061147-49061166 None:intergenic 35.0%
TCAGAGAAAACTATGTCTGT+TGG - chr7_2:49061219-49061238 None:intergenic 35.0%
! ACAGACATAGTTTTCTCTGA+AGG + chr7_2:49061219-49061238 Msa1060580:CDS 35.0%
!! ACATAGTTTTCTCTGAAGGA+TGG + chr7_2:49061223-49061242 Msa1060580:CDS 35.0%
AAGTTGTTCACATCGATCTT+AGG - chr7_2:49061270-49061289 None:intergenic 35.0%
!! TATCAGGTTGAGTAAAGTAC+AGG - chr7_2:49061298-49061317 None:intergenic 35.0%
TCATAGTCGTTCTCAAAATC+TGG - chr7_2:49061336-49061355 None:intergenic 35.0%
GTGAAGGAATTGAGATCAAA+AGG + chr7_2:49061408-49061427 Msa1060580:CDS 35.0%
! GCCAATCTTTTCAATACCAT+AGG + chr7_2:49061465-49061484 Msa1060580:CDS 35.0%
! GCCTATGGTATTGAAAAGAT+TGG - chr7_2:49061469-49061488 None:intergenic 35.0%
AATGCTCACGTAATTTCTCT+TGG - chr7_2:49061530-49061549 None:intergenic 35.0%
CTGAATGAAAGTAAGAGCAA+GGG - chr7_2:49061646-49061665 None:intergenic 35.0%
TCTGAATGAAAGTAAGAGCA+AGG - chr7_2:49061647-49061666 None:intergenic 35.0%
TATGGCATTCATCACTTCTT+TGG + chr7_2:49061730-49061749 Msa1060580:three_prime_UTR 35.0%
! AGATCTACGTGTTACTCTAT+TGG + chr7_2:49061907-49061926 Msa1060580:three_prime_UTR 35.0%
TATCTTGGGTCGTGAACTTT+CGG - chr7_2:49060078-49060097 None:intergenic 40.0%
TTCACGACCCAAGATACAAA+AGG + chr7_2:49060082-49060101 Msa1060580:CDS 40.0%
CCGCAGAAAGATACCAAATT+TGG + chr7_2:49060115-49060134 Msa1060580:CDS 40.0%
! GAAGTACTACAAACCCAAGT+TGG + chr7_2:49060139-49060158 Msa1060580:CDS 40.0%
!! AAACCCAAGTTGGTGTCAAT+AGG + chr7_2:49060149-49060168 Msa1060580:CDS 40.0%
! AGAGAAGTACAAGCTTACGT+GGG + chr7_2:49060208-49060227 Msa1060580:CDS 40.0%
TCAACTCGAAAGTCTCTTGA+AGG + chr7_2:49060338-49060357 Msa1060580:CDS 40.0%
CCTTAATATTCATGTGCCCT+GGG - chr7_2:49060454-49060473 None:intergenic 40.0%
! TGATCAACTTGTTCTTCTGG+TGG + chr7_2:49060475-49060494 Msa1060580:CDS 40.0%
TTATCTGACTGTGACTCATC+TGG - chr7_2:49060632-49060651 None:intergenic 40.0%
AGATGAGTCACAGTCAGATA+AGG + chr7_2:49060631-49060650 Msa1060580:CDS 40.0%
CAGAAGATCAAGAAGATGAG+TGG - chr7_2:49060732-49060751 None:intergenic 40.0%
CTGTTTCAAATTCTGCCCTT+AGG - chr7_2:49060815-49060834 None:intergenic 40.0%
! AATTTTGAATCCTAAGCCCC+CGG + chr7_2:49061004-49061023 Msa1060580:intron 40.0%
AGTGCAAGCCGATTACATAT+AGG + chr7_2:49061136-49061155 Msa1060580:CDS 40.0%
GTGCAAGCCGATTACATATA+GGG + chr7_2:49061137-49061156 Msa1060580:CDS 40.0%
TGCAAGCCGATTACATATAG+GGG + chr7_2:49061138-49061157 Msa1060580:CDS 40.0%
GACACATCTCATATGCTATC+AGG - chr7_2:49061314-49061333 None:intergenic 40.0%
ATTCCTTCACATCTTCAGGA+TGG - chr7_2:49061398-49061417 None:intergenic 40.0%
CTCAATTCCTTCACATCTTC+AGG - chr7_2:49061402-49061421 None:intergenic 40.0%
! AAGGGATTTTGTGCACCTTT+TGG + chr7_2:49061427-49061446 Msa1060580:CDS 40.0%
AACTACCTCATCACTCCAAA+AGG - chr7_2:49061445-49061464 None:intergenic 40.0%
ATACAAGACATGGATAGCGT+TGG + chr7_2:49061560-49061579 Msa1060580:CDS 40.0%
TACAAGACATGGATAGCGTT+GGG + chr7_2:49061561-49061580 Msa1060580:CDS 40.0%
GCACTTACTTCAACAATCCT+TGG + chr7_2:49061589-49061608 Msa1060580:CDS 40.0%
TGCAGCAAGGAATGCAATAA+CGG - chr7_2:49061616-49061635 None:intergenic 40.0%
GACATTGTTTACGGTTCACT+CGG + chr7_2:49061665-49061684 Msa1060580:CDS 40.0%
ACATACTCATAGTCAAGACG+TGG - chr7_2:49061809-49061828 None:intergenic 40.0%
TATCTTGGGTCGTGAACTTT+CGG - chr7_2:49060078-49060097 None:intergenic 40.0%
TTCACGACCCAAGATACAAA+AGG + chr7_2:49060082-49060101 Msa1060580:CDS 40.0%
CCGCAGAAAGATACCAAATT+TGG + chr7_2:49060115-49060134 Msa1060580:CDS 40.0%
! GAAGTACTACAAACCCAAGT+TGG + chr7_2:49060139-49060158 Msa1060580:CDS 40.0%
!! AAACCCAAGTTGGTGTCAAT+AGG + chr7_2:49060149-49060168 Msa1060580:CDS 40.0%
! AGAGAAGTACAAGCTTACGT+GGG + chr7_2:49060208-49060227 Msa1060580:CDS 40.0%
TCAACTCGAAAGTCTCTTGA+AGG + chr7_2:49060338-49060357 Msa1060580:CDS 40.0%
CCTTAATATTCATGTGCCCT+GGG - chr7_2:49060454-49060473 None:intergenic 40.0%
! TGATCAACTTGTTCTTCTGG+TGG + chr7_2:49060475-49060494 Msa1060580:CDS 40.0%
TTATCTGACTGTGACTCATC+TGG - chr7_2:49060632-49060651 None:intergenic 40.0%
AGATGAGTCACAGTCAGATA+AGG + chr7_2:49060631-49060650 Msa1060580:CDS 40.0%
CAGAAGATCAAGAAGATGAG+TGG - chr7_2:49060732-49060751 None:intergenic 40.0%
CTGTTTCAAATTCTGCCCTT+AGG - chr7_2:49060815-49060834 None:intergenic 40.0%
! AATTTTGAATCCTAAGCCCC+CGG + chr7_2:49061004-49061023 Msa1060580:intron 40.0%
AGTGCAAGCCGATTACATAT+AGG + chr7_2:49061136-49061155 Msa1060580:CDS 40.0%
GTGCAAGCCGATTACATATA+GGG + chr7_2:49061137-49061156 Msa1060580:CDS 40.0%
TGCAAGCCGATTACATATAG+GGG + chr7_2:49061138-49061157 Msa1060580:CDS 40.0%
GACACATCTCATATGCTATC+AGG - chr7_2:49061314-49061333 None:intergenic 40.0%
ATTCCTTCACATCTTCAGGA+TGG - chr7_2:49061398-49061417 None:intergenic 40.0%
CTCAATTCCTTCACATCTTC+AGG - chr7_2:49061402-49061421 None:intergenic 40.0%
! AAGGGATTTTGTGCACCTTT+TGG + chr7_2:49061427-49061446 Msa1060580:CDS 40.0%
AACTACCTCATCACTCCAAA+AGG - chr7_2:49061445-49061464 None:intergenic 40.0%
ATACAAGACATGGATAGCGT+TGG + chr7_2:49061560-49061579 Msa1060580:CDS 40.0%
TACAAGACATGGATAGCGTT+GGG + chr7_2:49061561-49061580 Msa1060580:CDS 40.0%
GCACTTACTTCAACAATCCT+TGG + chr7_2:49061589-49061608 Msa1060580:CDS 40.0%
TGCAGCAAGGAATGCAATAA+CGG - chr7_2:49061616-49061635 None:intergenic 40.0%
GACATTGTTTACGGTTCACT+CGG + chr7_2:49061665-49061684 Msa1060580:CDS 40.0%
ACATACTCATAGTCAAGACG+TGG - chr7_2:49061809-49061828 None:intergenic 40.0%
ATCTTGGGTCGTGAACTTTC+GGG - chr7_2:49060077-49060096 None:intergenic 45.0%
ACGACCCAAGATACAAAAGG+TGG + chr7_2:49060085-49060104 Msa1060580:CDS 45.0%
GGACCTATTGACACCAACTT+GGG - chr7_2:49060155-49060174 None:intergenic 45.0%
AGGACCTATTGACACCAACT+TGG - chr7_2:49060156-49060175 None:intergenic 45.0%
! GAGAGAAGTACAAGCTTACG+TGG + chr7_2:49060207-49060226 Msa1060580:CDS 45.0%
CGAAAGTCTCTTGAAGGCTT+TGG + chr7_2:49060344-49060363 Msa1060580:CDS 45.0%
! TCCACGACAGCTTTTCTTCA+AGG - chr7_2:49060373-49060392 None:intergenic 45.0%
TGCATATCTTGGAGAAAGCC+AGG + chr7_2:49060420-49060439 Msa1060580:CDS 45.0%
CCCAGGGCACATGAATATTA+AGG + chr7_2:49060451-49060470 Msa1060580:CDS 45.0%
GCCTTAATATTCATGTGCCC+TGG - chr7_2:49060455-49060474 None:intergenic 45.0%
! GGCTGATCAACTTGTTCTTC+TGG + chr7_2:49060472-49060491 Msa1060580:CDS 45.0%
! TCAACTTGTTCTTCTGGTGG+TGG + chr7_2:49060478-49060497 Msa1060580:CDS 45.0%
TGGCCCAATAATGATGTTCG+AGG - chr7_2:49060607-49060626 None:intergenic 45.0%
GTCACAGTCAGATAAGGAGA+AGG + chr7_2:49060637-49060656 Msa1060580:CDS 45.0%
GTCAGATAAGGAGAAGGTCA+TGG + chr7_2:49060643-49060662 Msa1060580:CDS 45.0%
GAGAAGGTCATGGTTCCAAA+AGG + chr7_2:49060653-49060672 Msa1060580:CDS 45.0%
GTCATGGTTCCAAAAGGAGA+AGG + chr7_2:49060659-49060678 Msa1060580:CDS 45.0%
! CTATGCTCTCCTTCTCCTTT+TGG - chr7_2:49060671-49060690 None:intergenic 45.0%
CAATACCATAGGCACAGACT+TGG + chr7_2:49061476-49061495 Msa1060580:CDS 45.0%
AGGAATGCAATAACGGTCCA+AGG - chr7_2:49061609-49061628 None:intergenic 45.0%
CAAGGGCAATAAATGCAGCA+AGG - chr7_2:49061629-49061648 None:intergenic 45.0%
! TTCACTCGGCTTGCAAATGA+AGG + chr7_2:49061679-49061698 Msa1060580:CDS 45.0%
ATCTTGGGTCGTGAACTTTC+GGG - chr7_2:49060077-49060096 None:intergenic 45.0%
ACGACCCAAGATACAAAAGG+TGG + chr7_2:49060085-49060104 Msa1060580:CDS 45.0%
GGACCTATTGACACCAACTT+GGG - chr7_2:49060155-49060174 None:intergenic 45.0%
AGGACCTATTGACACCAACT+TGG - chr7_2:49060156-49060175 None:intergenic 45.0%
! GAGAGAAGTACAAGCTTACG+TGG + chr7_2:49060207-49060226 Msa1060580:CDS 45.0%
CGAAAGTCTCTTGAAGGCTT+TGG + chr7_2:49060344-49060363 Msa1060580:CDS 45.0%
! TCCACGACAGCTTTTCTTCA+AGG - chr7_2:49060373-49060392 None:intergenic 45.0%
TGCATATCTTGGAGAAAGCC+AGG + chr7_2:49060420-49060439 Msa1060580:CDS 45.0%
CCCAGGGCACATGAATATTA+AGG + chr7_2:49060451-49060470 Msa1060580:CDS 45.0%
GCCTTAATATTCATGTGCCC+TGG - chr7_2:49060455-49060474 None:intergenic 45.0%
! GGCTGATCAACTTGTTCTTC+TGG + chr7_2:49060472-49060491 Msa1060580:CDS 45.0%
! TCAACTTGTTCTTCTGGTGG+TGG + chr7_2:49060478-49060497 Msa1060580:CDS 45.0%
TGGCCCAATAATGATGTTCG+AGG - chr7_2:49060607-49060626 None:intergenic 45.0%
GTCACAGTCAGATAAGGAGA+AGG + chr7_2:49060637-49060656 Msa1060580:CDS 45.0%
GTCAGATAAGGAGAAGGTCA+TGG + chr7_2:49060643-49060662 Msa1060580:CDS 45.0%
GAGAAGGTCATGGTTCCAAA+AGG + chr7_2:49060653-49060672 Msa1060580:CDS 45.0%
GTCATGGTTCCAAAAGGAGA+AGG + chr7_2:49060659-49060678 Msa1060580:CDS 45.0%
! CTATGCTCTCCTTCTCCTTT+TGG - chr7_2:49060671-49060690 None:intergenic 45.0%
CAATACCATAGGCACAGACT+TGG + chr7_2:49061476-49061495 Msa1060580:CDS 45.0%
AGGAATGCAATAACGGTCCA+AGG - chr7_2:49061609-49061628 None:intergenic 45.0%
CAAGGGCAATAAATGCAGCA+AGG - chr7_2:49061629-49061648 None:intergenic 45.0%
! TTCACTCGGCTTGCAAATGA+AGG + chr7_2:49061679-49061698 Msa1060580:CDS 45.0%
!!! AAAGAAAAAATATTTTAAAA+AGG - chr7_2:49061051-49061070 None:intergenic 5.0%
!!! TTTTTTAATGAATAAATTTT+AGG + chr7_2:49061771-49061790 Msa1060580:three_prime_UTR 5.0%
!!! AAAGAAAAAATATTTTAAAA+AGG - chr7_2:49061051-49061070 None:intergenic 5.0%
!!! TTTTTTAATGAATAAATTTT+AGG + chr7_2:49061771-49061790 Msa1060580:three_prime_UTR 5.0%
GCCTTGAAGAAAAGCTGTCG+TGG + chr7_2:49060369-49060388 Msa1060580:CDS 50.0%
TCGTGGATGTTGTTCGTGGA+TGG + chr7_2:49060386-49060405 Msa1060580:CDS 50.0%
!! TGTTCTTCTGGTGGTGGATG+TGG + chr7_2:49060484-49060503 Msa1060580:CDS 50.0%
!!! GGTGGTGGATGTGGTTTTGT+TGG + chr7_2:49060493-49060512 Msa1060580:CDS 50.0%
TGACTGTGACTCATCTGGTG+TGG - chr7_2:49060627-49060646 None:intergenic 50.0%
CCTTGGACTTGGATGTAGTG+AGG - chr7_2:49060766-49060785 None:intergenic 50.0%
CCTCACTACATCCAAGTCCA+AGG + chr7_2:49060763-49060782 Msa1060580:CDS 50.0%
TGTTATCTCCGAGTGACACC+GGG - chr7_2:49061025-49061044 None:intergenic 50.0%
GTGTTATCTCCGAGTGACAC+CGG - chr7_2:49061026-49061045 None:intergenic 50.0%
CGACCATCCTGAAGATGTGA+AGG + chr7_2:49061392-49061411 Msa1060580:CDS 50.0%
!!! GTGCACCTTTTGGAGTGATG+AGG + chr7_2:49061437-49061456 Msa1060580:CDS 50.0%
AGGTACCAAGTCTGTGCCTA+TGG - chr7_2:49061484-49061503 None:intergenic 50.0%
! ACTCGGCTTGCAAATGAAGG+TGG + chr7_2:49061682-49061701 Msa1060580:exon 50.0%
GCCTTGAAGAAAAGCTGTCG+TGG + chr7_2:49060369-49060388 Msa1060580:CDS 50.0%
TCGTGGATGTTGTTCGTGGA+TGG + chr7_2:49060386-49060405 Msa1060580:CDS 50.0%
!! TGTTCTTCTGGTGGTGGATG+TGG + chr7_2:49060484-49060503 Msa1060580:CDS 50.0%
!!! GGTGGTGGATGTGGTTTTGT+TGG + chr7_2:49060493-49060512 Msa1060580:CDS 50.0%
TGACTGTGACTCATCTGGTG+TGG - chr7_2:49060627-49060646 None:intergenic 50.0%
CCTTGGACTTGGATGTAGTG+AGG - chr7_2:49060766-49060785 None:intergenic 50.0%
CCTCACTACATCCAAGTCCA+AGG + chr7_2:49060763-49060782 Msa1060580:CDS 50.0%
TGTTATCTCCGAGTGACACC+GGG - chr7_2:49061025-49061044 None:intergenic 50.0%
GTGTTATCTCCGAGTGACAC+CGG - chr7_2:49061026-49061045 None:intergenic 50.0%
CGACCATCCTGAAGATGTGA+AGG + chr7_2:49061392-49061411 Msa1060580:CDS 50.0%
!!! GTGCACCTTTTGGAGTGATG+AGG + chr7_2:49061437-49061456 Msa1060580:CDS 50.0%
AGGTACCAAGTCTGTGCCTA+TGG - chr7_2:49061484-49061503 None:intergenic 50.0%
! ACTCGGCTTGCAAATGAAGG+TGG + chr7_2:49061682-49061701 Msa1060580:exon 50.0%
GCTGTCGTGGATGTTGTTCG+TGG + chr7_2:49060382-49060401 Msa1060580:CDS 55.0%
ATCTTGGAGAAAGCCAGGCG+TGG + chr7_2:49060425-49060444 Msa1060580:CDS 55.0%
TTATCTCCGAGTGACACCGG+GGG - chr7_2:49061023-49061042 None:intergenic 55.0%
GTTATCTCCGAGTGACACCG+GGG - chr7_2:49061024-49061043 None:intergenic 55.0%
GCTGTCGTGGATGTTGTTCG+TGG + chr7_2:49060382-49060401 Msa1060580:CDS 55.0%
ATCTTGGAGAAAGCCAGGCG+TGG + chr7_2:49060425-49060444 Msa1060580:CDS 55.0%
TTATCTCCGAGTGACACCGG+GGG - chr7_2:49061023-49061042 None:intergenic 55.0%
GTTATCTCCGAGTGACACCG+GGG - chr7_2:49061024-49061043 None:intergenic 55.0%
!! CCTAAGCCCCCGGTGTCACT+CGG + chr7_2:49061014-49061033 Msa1060580:intron 65.0%
!! CCTAAGCCCCCGGTGTCACT+CGG + chr7_2:49061014-49061033 Msa1060580:intron 65.0%
AAAGCCAGGCGTGGCGACCC+AGG + chr7_2:49060434-49060453 Msa1060580:CDS 70.0%
AAGCCAGGCGTGGCGACCCA+GGG + chr7_2:49060435-49060454 Msa1060580:CDS 70.0%
CCGAGTGACACCGGGGGCTT+AGG - chr7_2:49061017-49061036 None:intergenic 70.0%
AAAGCCAGGCGTGGCGACCC+AGG + chr7_2:49060434-49060453 Msa1060580:CDS 70.0%
AAGCCAGGCGTGGCGACCCA+GGG + chr7_2:49060435-49060454 Msa1060580:CDS 70.0%
CCGAGTGACACCGGGGGCTT+AGG - chr7_2:49061017-49061036 None:intergenic 70.0%
! GTGCCCTGGGTCGCCACGCC+TGG - chr7_2:49060441-49060460 None:intergenic 80.0%
! GTGCCCTGGGTCGCCACGCC+TGG - chr7_2:49060441-49060460 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 49059887 49061933 49059887 ID=Msa1060580;Name=Msa1060580
chr7_2 mRNA 49059887 49061933 49059887 ID=Msa1060580-mRNA-1;Parent=Msa1060580;Name=Msa1060580-mRNA-1;_AED=0.25;_eAED=0.25;_QI=127|1|1|1|1|1|2|235|447
chr7_2 exon 49059887 49060784 49059887 ID=Msa1060580-mRNA-1:exon:8803;Parent=Msa1060580-mRNA-1
chr7_2 exon 49061126 49061933 49061126 ID=Msa1060580-mRNA-1:exon:8804;Parent=Msa1060580-mRNA-1
chr7_2 five_prime_UTR 49059887 49060013 49059887 ID=Msa1060580-mRNA-1:five_prime_utr;Parent=Msa1060580-mRNA-1
chr7_2 CDS 49060014 49060784 49060014 ID=Msa1060580-mRNA-1:cds;Parent=Msa1060580-mRNA-1
chr7_2 CDS 49061126 49061698 49061126 ID=Msa1060580-mRNA-1:cds;Parent=Msa1060580-mRNA-1
chr7_2 three_prime_UTR 49061699 49061933 49061699 ID=Msa1060580-mRNA-1:three_prime_utr;Parent=Msa1060580-mRNA-1
Gene Sequence

>Msa1060580

ATGATGGCATCCCAAACTATTGAAGAAAAACTTGTGGAGCTACAAAAATCAAAGCAAACACCCGAAAGTTCACGACCCAAGATACAAAAGGTGGTAGATTACCGCAGAAAGATACCAAATTTGGGGAAGTACTACAAACCCAAGTTGGTGTCAATAGGTCCTATCCATCATGACAATGAAAATCTGAAGTTACGAGAGAAGTACAAGCTTACGTGGGCATCAAAATACATAGAAAACAACAAACTTAATCCAGAGGAACTACACAAAAAGATTGCTGATAACATCGATAAACTGAAGGGTCGTTTTAGCGACGATGTTTTAACTTCAACTCGAAAGTCTCTTGAAGGCTTTGGTAGCCTTGAAGAAAAGCTGTCGTGGATGTTGTTCGTGGATGGATGTTCTTTGCTGCATATCTTGGAGAAAGCCAGGCGTGGCGACCCAGGGCACATGAATATTAAGGCTGATCAACTTGTTCTTCTGGTGGTGGATGTGGTTTTGTTGGAGAATCAACTTCCTTATGAAGTACTTAAGCTATTGTGGAAAGATAGCAAAGATAGCGAGAGTGAATTGATAAAAAGCATGACGAAATTCCTCGAACATCATTATTGGGCCACACCAGATGAGTCACAGTCAGATAAGGAGAAGGTCATGGTTCCAAAAGGAGAAGGAGAGCATAGTGTATCAATAACAAATGAGTCACAGTCAGAGACAATACCCACTCATCTTCTTGATCTTCTGCATAAACTCAACCTCACTACATCCAAGTCCAAGAAGAAGAATGAGTGCAAGCCGATTACATATAGGGGCATAGAAGATCTAAAAGCAGTAGGAATAAGACTTAAAGCAAGCTTTACAAGAAAGCCAACAGACATAGTTTTCTCTGAAGGATGGTTTACTGCAAAACTGACTATTCCTAAGATCGATGTGAACAACTTTACAGCCTGTACTTTACTCAACCTGATAGCATATGAGATGTGTCCAGATTTTGAGAACGACTATGAGATTTGTTCTTATGTATCTTTAATGGACTCGCTCATCGACCATCCTGAAGATGTGAAGGAATTGAGATCAAAAGGGATTTTGTGCACCTTTTGGAGTGATGAGGTAGTTGCCAATCTTTTCAATACCATAGGCACAGACTTGGTACCTAACATCGACAAATATGTTGAAGTCCAAGAGAAATTACGTGAGCATTACTTTAATAAATACAAGACATGGATAGCGTTGGGTTATCGCACTTACTTCAACAATCCTTGGACCGTTATTGCATTCCTTGCTGCATTTATTGCCCTTGCTCTTACTTTCATTCAGACATTGTTTACGGTTCACTCGGCTTGCAAATGA
Protein sequence

>Msa1060580

MMASQTIEEKLVELQKSKQTPESSRPKIQKVVDYRRKIPNLGKYYKPKLVSIGPIHHDNENLKLREKYKLTWASKYIENNKLNPEELHKKIADNIDKLKGRFSDDVLTSTRKSLEGFGSLEEKLSWMLFVDGCSLLHILEKARRGDPGHMNIKADQLVLLVVDVVLLENQLPYEVLKLLWKDSKDSESELIKSMTKFLEHHYWATPDESQSDKEKVMVPKGEGEHSVSITNESQSETIPTHLLDLLHKLNLTTSKSKKKNECKPITYRGIEDLKAVGIRLKASFTRKPTDIVFSEGWFTAKLTIPKIDVNNFTACTLLNLIAYEMCPDFENDYEICSYVSLMDSLIDHPEDVKELRSKGILCTFWSDEVVANLFNTIGTDLVPNIDKYVEVQEKLREHYFNKYKTWIALGYRTYFNNPWTVIAFLAAFIALALTFIQTLFTVHSACK*