AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1080750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1080750 MtrunA17_Chr7g0267431 96.359 412 1 1 1 398 1 412 0.0 819
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1080750 AT3G09180.3 54.177 395 151 6 21 398 21 402 2.49e-146 421
Msa1080750 AT3G09180.1 54.177 395 151 6 21 398 21 402 2.49e-146 421
Msa1080750 AT3G09180.2 57.396 338 124 5 21 341 21 355 3.02e-133 386

Find 128 sgRNAs with CRISPR-Local

Find 372 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCCAGTCCACCGGCCTTAT+TGG 0.155742 7_2:+80365602 Msa1080750:CDS
CAAAATGTTCCTATCTCTTA+TGG 0.214790 7_2:-80366590 None:intergenic
GATCACACTGACGATTATTT+AGG 0.244154 7_2:+80365725 Msa1080750:exon
TAAATTTGATTGCTTATCTA+TGG 0.251871 7_2:-80365572 None:intergenic
GAAAAGGAAAACTTCCAATA+AGG 0.292755 7_2:-80365616 None:intergenic
TGGAGGAGGGAGGAGGAGTG+GGG 0.303544 7_2:-80361711 None:intergenic
TCCAATAAGGCCGGTGGACT+GGG 0.326295 7_2:-80365603 None:intergenic
CTGCATCTATTCTCTTAAAA+TGG 0.328141 7_2:+80366477 Msa1080750:three_prime_UTR
ATTCTGGTCCTTTGAAGATA+TGG 0.337719 7_2:-80365653 None:intergenic
TTCCATCCAGCATGCATAAA+AGG 0.338607 7_2:-80366614 None:intergenic
CCATAGTAGTATCTGAATTC+TGG 0.351814 7_2:-80365669 None:intergenic
TTCCAATAAGGCCGGTGGAC+TGG 0.358151 7_2:-80365604 None:intergenic
AGAAAACTCATTACTTCCTT+AGG 0.361665 7_2:-80363857 None:intergenic
ACTACTATGGCTTATCATAT+TGG 0.365286 7_2:+80365682 Msa1080750:CDS
TCTATGACTGCAACCTTCTC+TGG 0.369638 7_2:-80364067 None:intergenic
GGTGGAGGAGGGAGGAGGAG+TGG 0.378647 7_2:-80361713 None:intergenic
ATAACAACTCTGAAGATAGA+AGG 0.378820 7_2:-80364100 None:intergenic
GAAAAGAAAGCGACAGCATC+GGG 0.384329 7_2:-80364151 None:intergenic
TGTTCCTCAGAACTCTCATT+TGG 0.390911 7_2:-80363992 None:intergenic
AAATATAAACATACCTCGTC+TGG 0.394897 7_2:-80364175 None:intergenic
AGGTGCTTCCGCGGTGGAGG+AGG 0.394926 7_2:-80361725 None:intergenic
TCCAAGGACTGCAGAACATC+TGG 0.396727 7_2:-80363890 None:intergenic
GGAGGAGGGAGGAGGAGTGG+GGG 0.401426 7_2:-80361710 None:intergenic
TAAGCGAAAGTTAGGATCAA+TGG 0.410392 7_2:+80364033 Msa1080750:CDS
GTGGAGGAGGGAGGAGGAGT+GGG 0.415547 7_2:-80361712 None:intergenic
CCAGAATTCAGATACTACTA+TGG 0.418672 7_2:+80365669 Msa1080750:CDS
GTTATATCCTTGCATCCTGC+TGG 0.428885 7_2:+80364118 Msa1080750:CDS
ACCAGATGTTCTGCAGTCCT+TGG 0.443020 7_2:+80363889 Msa1080750:CDS
GGTTCTAGTAAGCGAAAGTT+AGG 0.445637 7_2:+80364025 Msa1080750:CDS
ATCATCGCCGACATCCGAAT+TGG 0.448405 7_2:+80361796 Msa1080750:CDS
GGCAGAAGCTCCAGCTTGAC+CGG 0.450352 7_2:-80362179 None:intergenic
GGAAAGGAGCTTGAAGAAGC+TGG 0.454964 7_2:+80362049 Msa1080750:intron
CTCAGTCCTAGATTCTCAAT+TGG 0.457021 7_2:-80366802 None:intergenic
TCATGTGTATAGACATATTA+CGG 0.457686 7_2:+80365127 Msa1080750:CDS
GGATGGTAGCAAAGAGATAG+TGG 0.460231 7_2:-80361626 None:intergenic
TAGGCAACAACGGCACCATC+TGG 0.461071 7_2:-80362136 None:intergenic
AGCGACAGCATCGGGATCAA+TGG 0.463919 7_2:-80364143 None:intergenic
AGGACAAAACCATAAGAGAT+AGG 0.464772 7_2:+80366581 Msa1080750:three_prime_UTR
CGACAACTCGCCGGTCAAGC+TGG 0.467324 7_2:+80362169 Msa1080750:CDS
ATAGCTAGAGCAACCTGCTT+CGG 0.468530 7_2:-80361748 None:intergenic
TCCGCGGTGGAGGAGGGAGG+AGG 0.470294 7_2:-80361718 None:intergenic
AAGCGAAAGTTAGGATCAAT+GGG 0.477448 7_2:+80364034 Msa1080750:CDS
CAGATTCAAAGAAGCGTTGT+GGG 0.479474 7_2:+80363813 Msa1080750:CDS
GTGCCGTTGTTGCCTATGCT+TGG 0.482427 7_2:+80362143 Msa1080750:CDS
CTTCAACTCCATCATCAAGA+TGG 0.482949 7_2:-80363781 None:intergenic
CGGAGGTGCTTCCGCGGTGG+AGG 0.483398 7_2:-80361728 None:intergenic
ATGCCGCTGGTTTGTCCAGA+TGG 0.486924 7_2:+80362121 Msa1080750:CDS
CCTTTGAAGATATGGTTGAC+AGG 0.493358 7_2:-80365645 None:intergenic
TATAATAGAAAATAGTTCAA+GGG 0.497621 7_2:+80366777 Msa1080750:three_prime_UTR
GGTGCTTCCGCGGTGGAGGA+GGG 0.499035 7_2:-80361724 None:intergenic
GGCAGGCAATGATCAATGTC+AGG 0.499471 7_2:-80366556 None:intergenic
ATGGTCTTGAAAATAAAGTC+TGG 0.505478 7_2:-80365446 None:intergenic
TTGGGGATTGCATATGCCGC+TGG 0.506878 7_2:+80362108 Msa1080750:CDS
TTTAAAGACCTTCGATCCCT+CGG 0.507856 7_2:+80361925 Msa1080750:CDS
TGTTCTGCAGTCCTTGGAAA+AGG 0.508609 7_2:+80363895 Msa1080750:CDS
AGCTGGAGTTCTTAGTGAAA+CGG 0.510669 7_2:+80362066 Msa1080750:CDS
TTCAACTCCATCATCAAGAT+GGG 0.512069 7_2:-80363780 None:intergenic
AGAAGTCACATTTGAACCTA+AGG 0.514604 7_2:+80363841 Msa1080750:CDS
GTATAATAGAAAATAGTTCA+AGG 0.516031 7_2:+80366776 Msa1080750:three_prime_UTR
GGAGACGATCAGCGCCAATT+CGG 0.516484 7_2:-80361810 None:intergenic
AACGCATACCGAGGGATCGA+AGG 0.518466 7_2:-80361933 None:intergenic
TTCTATTATACATACATGGA+TGG 0.520111 7_2:-80366764 None:intergenic
TATTGTTAGCCCCAGTCCAC+CGG 0.522334 7_2:+80365593 Msa1080750:CDS
CAGAGAAGATAGAGATGTGT+AGG 0.523018 7_2:-80366726 None:intergenic
ATCAGAATACATACATTCAA+AGG 0.532225 7_2:-80366895 None:intergenic
GATGTCGGCGATGATACGTT+CGG 0.535062 7_2:-80361788 None:intergenic
GAAGCAGGTTGCTCTAGCTA+TGG 0.535644 7_2:+80361750 Msa1080750:CDS
CATTGATCATTGCCTGCCAC+AGG 0.545320 7_2:+80366561 Msa1080750:three_prime_UTR
CAGCGATGAATAGAGCTTCG+AGG 0.547357 7_2:-80361831 None:intergenic
AGAACTCTCATTTGGTGAAG+AGG 0.550108 7_2:-80363984 None:intergenic
CTGCTTCGGAGGTGCTTCCG+CGG 0.550284 7_2:-80361734 None:intergenic
GTGGAAGCTATGTGCATGCA+AGG 0.550710 7_2:+80365090 Msa1080750:CDS
GAAGCTCTATTCATCGCTGC+TGG 0.552451 7_2:+80361835 Msa1080750:CDS
CCTGTCAACCATATCTTCAA+AGG 0.552874 7_2:+80365645 Msa1080750:CDS
TCTTTGACGAAAACTTGAAG+AGG 0.553058 7_2:-80361880 None:intergenic
AGAAAAGAAAGCGACAGCAT+CGG 0.557015 7_2:-80364152 None:intergenic
GCTTCCGCGGTGGAGGAGGG+AGG 0.559888 7_2:-80361721 None:intergenic
TTAGTGAAACGGCACGGTCA+CGG 0.562114 7_2:+80362077 Msa1080750:CDS
AACTGCAAATCGAACCTGCA+TGG 0.565160 7_2:-80365465 None:intergenic
TGAAACGGCACGGTCACGGA+AGG 0.567867 7_2:+80362081 Msa1080750:CDS
AATACAGTGATGTTTCAGCT+TGG 0.576810 7_2:-80365283 None:intergenic
AGAGATAGTGGGATCCTCCT+CGG 0.576930 7_2:-80361614 None:intergenic
GGTTGAGAAAGTTGCCGCCG+TGG 0.577460 7_2:-80361689 None:intergenic
AGGAAAACTTCCAATAAGGC+CGG 0.581505 7_2:-80365612 None:intergenic
ATCAGCGCCAATTCGGATGT+CGG 0.583731 7_2:-80361803 None:intergenic
TCGGGATCAATGGAACCAGC+AGG 0.583768 7_2:-80364133 None:intergenic
TGGAAGCTATGTGCATGCAA+GGG 0.588510 7_2:+80365091 Msa1080750:CDS
TTAAAATGGCGCATATCACA+TGG 0.589772 7_2:+80366491 Msa1080750:three_prime_UTR
AATGGAACCAGCAGGATGCA+AGG 0.589922 7_2:-80364125 None:intergenic
GGGAATGGTTGCTCCAGAGA+AGG 0.594303 7_2:+80364054 Msa1080750:CDS
AACATCACTGTATTCTCTTG+TGG 0.595886 7_2:+80365292 Msa1080750:CDS
GCTAGAGCAACCTGCTTCGG+AGG 0.598630 7_2:-80361745 None:intergenic
CTTCGGAGGTGCTTCCGCGG+TGG 0.602149 7_2:-80361731 None:intergenic
GCTGCTGGTCAACCTCATCA+AGG 0.602170 7_2:+80361850 Msa1080750:CDS
ATAATAGAAAATAGTTCAAG+GGG 0.603340 7_2:+80366778 Msa1080750:three_prime_UTR
TAACAACTCTGAAGATAGAA+GGG 0.606373 7_2:-80364099 None:intergenic
AAAGTTAGGATCAATGGGAA+TGG 0.607147 7_2:+80364039 Msa1080750:CDS
GGAAGCTATGTGCATGCAAG+GGG 0.609425 7_2:+80365092 Msa1080750:CDS
TCAGATTCAAAGAAGCGTTG+TGG 0.612312 7_2:+80363812 Msa1080750:CDS
GCTTGGAAACGACAACTCGC+CGG 0.615503 7_2:+80362160 Msa1080750:CDS
TGTATGTATTCTGATTCTGA+TGG 0.620676 7_2:+80366903 Msa1080750:three_prime_UTR
TCAGTGTGATCATACTTCCT+CGG 0.622502 7_2:-80365713 None:intergenic
CCAATAAGGCCGGTGGACTG+GGG 0.622914 7_2:-80365602 None:intergenic
GATGGTAGCAAAGAGATAGT+GGG 0.630872 7_2:-80361625 None:intergenic
AGAGGCTTATTGCCTTGATG+AGG 0.633931 7_2:-80361862 None:intergenic
AAGCTATGTGCATGCAAGGG+GGG 0.635832 7_2:+80365094 Msa1080750:CDS
GCAACAAACTCAGCAAGCCA+CGG 0.636504 7_2:+80361672 Msa1080750:CDS
GAGTTGTCGTTTCCAAGCAT+AGG 0.637421 7_2:-80362155 None:intergenic
TCAACTCCATCATCAAGATG+GGG 0.643677 7_2:-80363779 None:intergenic
TCCTCCTCCCTCCTCCACCG+CGG 0.648019 7_2:+80361717 Msa1080750:CDS
CAATTGAGAATCTAGGACTG+AGG 0.651584 7_2:+80366803 Msa1080750:three_prime_UTR
AAAACTTCCAATAAGGCCGG+TGG 0.654863 7_2:-80365609 None:intergenic
TTCACCAAATGAGAGTTCTG+AGG 0.659511 7_2:+80363988 Msa1080750:CDS
CAACTCCATCATCAAGATGG+GGG 0.661154 7_2:-80363778 None:intergenic
ATTTGGTGAAGAGGTGAGTG+TGG 0.667142 7_2:-80363975 None:intergenic
TCTGAGGAACATAACTATCG+TGG 0.670954 7_2:+80364004 Msa1080750:CDS
GGTGGATGCAAATGTTGCTG+TGG 0.681304 7_2:+80366850 Msa1080750:three_prime_UTR
ATGTATTCTGATTCTGATGG+AGG 0.681461 7_2:+80366906 Msa1080750:three_prime_UTR
GCTCTAGCTATGGACAAACT+CGG 0.684631 7_2:+80361760 Msa1080750:CDS
TTTCCAAGCATAGGCAACAA+CGG 0.687340 7_2:-80362146 None:intergenic
GCACCATCTGGACAAACCAG+CGG 0.691637 7_2:-80362124 None:intergenic
GAGTTCTTAGTGAAACGGCA+CGG 0.692244 7_2:+80362071 Msa1080750:CDS
TCAGGAAATGAATTAGCACA+TGG 0.695752 7_2:+80366433 Msa1080750:intron
TCATATTGGCTGCATCTCCG+AGG 0.702445 7_2:+80365696 Msa1080750:CDS
GAAGCTATGTGCATGCAAGG+GGG 0.706512 7_2:+80365093 Msa1080750:CDS
GCAGGCAATGATCAATGTCA+GGG 0.706843 7_2:-80366555 None:intergenic
ACAAACTCAGCAAGCCACGG+CGG 0.712432 7_2:+80361675 Msa1080750:CDS
TAATAGAAAATAGTTCAAGG+GGG 0.757693 7_2:+80366779 Msa1080750:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAAATATGAAAGAAAT+TGG + chr7_2:80362814-80362833 Msa1080750:intron 10.0%
!!! AATTTGTTCTTAATTTAAAA+AGG + chr7_2:80363335-80363354 Msa1080750:intron 10.0%
!! GAATTAAGTAATATTAAATT+AGG + chr7_2:80363566-80363585 Msa1080750:intron 10.0%
!!! ATTAATTAATTTTAATCTTC+AGG + chr7_2:80366415-80366434 Msa1080750:intron 10.0%
!!! GAAAATATTATTTTTCCTTT+AGG + chr7_2:80362435-80362454 Msa1080750:intron 15.0%
!! AAAAAATGTATAAATCAATC+CGG - chr7_2:80362793-80362812 None:intergenic 15.0%
!! TATAACATAAAGGATTAAAT+CGG - chr7_2:80362904-80362923 None:intergenic 15.0%
!! TCTTAATTTAAAAAGGATAA+TGG + chr7_2:80363342-80363361 Msa1080750:intron 15.0%
!!! GTTTACATTTTATAACATAA+AGG + chr7_2:80363366-80363385 Msa1080750:intron 15.0%
!! AATCAGAAAAAAGATAATAT+AGG + chr7_2:80363393-80363412 Msa1080750:intron 15.0%
!! TTTCCTAATATTCATTATAT+GGG + chr7_2:80364211-80364230 Msa1080750:intron 15.0%
!!! TATTTTCTATTATACATACA+TGG - chr7_2:80366771-80366790 None:intergenic 15.0%
!! TATAATAGAAAATAGTTCAA+GGG + chr7_2:80366777-80366796 Msa1080750:three_prime_UTR 15.0%
!!! TGATTTTTTTCGATTTTGAT+AGG + chr7_2:80362028-80362047 Msa1080750:intron 20.0%
!! CTAAAAATGATTAATTCCAT+TGG - chr7_2:80362412-80362431 None:intergenic 20.0%
!! ATAACATAAAGGATTAAATC+GGG - chr7_2:80362903-80362922 None:intergenic 20.0%
!!! GTTGACATTTTATAACATAA+AGG - chr7_2:80362914-80362933 None:intergenic 20.0%
!! TTGTATGATGAAGATAATAT+GGG - chr7_2:80362986-80363005 None:intergenic 20.0%
!! ATTGTATGATGAAGATAATA+TGG - chr7_2:80362987-80363006 None:intergenic 20.0%
!!! GGGATTTTTTCAATTAAATT+TGG - chr7_2:80363019-80363038 None:intergenic 20.0%
!! TATTACCTGAAATTAAGTTA+AGG + chr7_2:80363423-80363442 Msa1080750:intron 20.0%
!! ATTACCTGAAATTAAGTTAA+GGG + chr7_2:80363424-80363443 Msa1080750:intron 20.0%
!! AGTAGATAATATATACTCTT+GGG + chr7_2:80363628-80363647 Msa1080750:intron 20.0%
!!! AAAGTTGAAATTTTCACATT+TGG - chr7_2:80363926-80363945 None:intergenic 20.0%
!!! TGAAAATTTCAACTTTTGAA+AGG + chr7_2:80363930-80363949 Msa1080750:CDS 20.0%
!! CTTTCCTAATATTCATTATA+TGG + chr7_2:80364210-80364229 Msa1080750:intron 20.0%
!! TTCCTAATATTCATTATATG+GGG + chr7_2:80364212-80364231 Msa1080750:intron 20.0%
!! TCGTATTATAAATAATGACT+CGG + chr7_2:80364257-80364276 Msa1080750:intron 20.0%
!! TTCAAAATAACTAAAGTCTA+TGG - chr7_2:80364626-80364645 None:intergenic 20.0%
!!! ACTTTAGTTATTTTGAATCA+TGG + chr7_2:80364629-80364648 Msa1080750:intron 20.0%
!!! AAGATGAAATTTTAGTTGTA+TGG - chr7_2:80364781-80364800 None:intergenic 20.0%
!! AAAATAAGTCATAAACAACA+AGG - chr7_2:80364958-80364977 None:intergenic 20.0%
!!! TCATATAGAAATTTTTGATC+TGG - chr7_2:80365492-80365511 None:intergenic 20.0%
!!! GTTACTAATCTCAATTTTTT+TGG + chr7_2:80365521-80365540 Msa1080750:intron 20.0%
!! TAAATTTGATTGCTTATCTA+TGG - chr7_2:80365575-80365594 None:intergenic 20.0%
!! TTGAATAATAAGGGTAAATA+TGG + chr7_2:80366067-80366086 Msa1080750:intron 20.0%
!! GTATAATAGAAAATAGTTCA+AGG + chr7_2:80366776-80366795 Msa1080750:three_prime_UTR 20.0%
!! ATAATAGAAAATAGTTCAAG+GGG + chr7_2:80366778-80366797 Msa1080750:three_prime_UTR 20.0%
!! ATGTAAAAAGTTAAAAGATG+TGG + chr7_2:80366829-80366848 Msa1080750:three_prime_UTR 20.0%
!!! TAGTATTTTTTCGTACAACT+CGG - chr7_2:80361593-80361612 None:intergenic 25.0%
!!! TTTTTCGATTTTGATAGGAA+AGG + chr7_2:80362033-80362052 Msa1080750:intron 25.0%
! GATTAAGGTTATGTAGAAAA+TGG - chr7_2:80363056-80363075 None:intergenic 25.0%
!!! TGTTTTTTTGCTTTTGGTTA+TGG - chr7_2:80363108-80363127 None:intergenic 25.0%
!!! TATGGTTGTTTTTTTGCTTT+TGG - chr7_2:80363114-80363133 None:intergenic 25.0%
!!! TTCGATTTTCTTTGTTTCTA+CGG - chr7_2:80363151-80363170 None:intergenic 25.0%
! AAAGAAAATCGAAGAAGAAA+GGG + chr7_2:80363158-80363177 Msa1080750:intron 25.0%
! TTGCCAAAGAAATTCTATTA+AGG + chr7_2:80363462-80363481 Msa1080750:intron 25.0%
!! TCTTATTTCAGATTTGATTC+AGG + chr7_2:80363590-80363609 Msa1080750:intron 25.0%
! CAGTAGATAATATATACTCT+TGG + chr7_2:80363627-80363646 Msa1080750:intron 25.0%
! TAAAATAAGGATTGCAATGT+TGG + chr7_2:80364391-80364410 Msa1080750:intron 25.0%
!! ACTAGATCAAAAATTTTCAG+AGG - chr7_2:80364566-80364585 None:intergenic 25.0%
!! TGTTAATTTTCACTGTTCTT+TGG + chr7_2:80364805-80364824 Msa1080750:intron 25.0%
! TCATGTGTATAGACATATTA+CGG + chr7_2:80365127-80365146 Msa1080750:CDS 25.0%
! TAGACATCAGTGATAATTTA+AGG - chr7_2:80365917-80365936 None:intergenic 25.0%
! TAAATTATCACTGATGTCTA+CGG + chr7_2:80365917-80365936 Msa1080750:intron 25.0%
!!! AGCTTTTGCTTTGAATAATA+AGG + chr7_2:80366057-80366076 Msa1080750:intron 25.0%
!!! GCTTTTGCTTTGAATAATAA+GGG + chr7_2:80366058-80366077 Msa1080750:intron 25.0%
!! CTTTAAAAATTACAATCAGC+TGG - chr7_2:80366643-80366662 None:intergenic 25.0%
!! CAGCTGATTGTAATTTTTAA+AGG + chr7_2:80366641-80366660 Msa1080750:three_prime_UTR 25.0%
! TTCTATTATACATACATGGA+TGG - chr7_2:80366767-80366786 None:intergenic 25.0%
! TAATAGAAAATAGTTCAAGG+GGG + chr7_2:80366779-80366798 Msa1080750:three_prime_UTR 25.0%
! TAAAAAGTTAAAAGATGTGG+TGG + chr7_2:80366832-80366851 Msa1080750:three_prime_UTR 25.0%
! ATCAGAATACATACATTCAA+AGG - chr7_2:80366898-80366917 None:intergenic 25.0%
!!! TTGATTTTGATTTCGCGATT+AGG + chr7_2:80361977-80361996 Msa1080750:intron 30.0%
!!! TGATTTTGATTTCGCGATTA+GGG + chr7_2:80361978-80361997 Msa1080750:intron 30.0%
ATTCCTATCTAACTACAGAA+GGG - chr7_2:80362369-80362388 None:intergenic 30.0%
TCCAAAGAAAAAAGAACCAA+TGG + chr7_2:80362393-80362412 Msa1080750:intron 30.0%
!!! TCCATTGGTTCTTTTTTCTT+TGG - chr7_2:80362397-80362416 None:intergenic 30.0%
! ATTGTATTTCTACACAACTC+AGG - chr7_2:80362598-80362617 None:intergenic 30.0%
TGTTGTAGATTGTTAATGCA+AGG + chr7_2:80362640-80362659 Msa1080750:intron 30.0%
GTTGTAGATTGTTAATGCAA+GGG + chr7_2:80362641-80362660 Msa1080750:intron 30.0%
! TATGTAGAAAATGGACTCAT+GGG - chr7_2:80363047-80363066 None:intergenic 30.0%
! TTATGTAGAAAATGGACTCA+TGG - chr7_2:80363048-80363067 None:intergenic 30.0%
GAGTTGGGAATAAATGATTA+AGG - chr7_2:80363071-80363090 None:intergenic 30.0%
! GTTGATTTCATTGATGAGTT+GGG - chr7_2:80363086-80363105 None:intergenic 30.0%
CAAAGAAAATCGAAGAAGAA+AGG + chr7_2:80363157-80363176 Msa1080750:intron 30.0%
! TGAAGATCCTTTTATGTTGT+TGG + chr7_2:80363191-80363210 Msa1080750:intron 30.0%
!! GAGTTTTGTGATGATTTTTC+TGG + chr7_2:80363292-80363311 Msa1080750:intron 30.0%
TTGTCCCTTAACTTAATTTC+AGG - chr7_2:80363431-80363450 None:intergenic 30.0%
GCTCCTTAATAGAATTTCTT+TGG - chr7_2:80363468-80363487 None:intergenic 30.0%
TATTTCAGATTTGATTCAGG+TGG + chr7_2:80363593-80363612 Msa1080750:intron 30.0%
TATATACTCTTGGGATTTGT+CGG + chr7_2:80363637-80363656 Msa1080750:intron 30.0%
! TTAGGCTTTTGAATGATTTC+AGG + chr7_2:80363714-80363733 Msa1080750:intron 30.0%
AGAAAACTCATTACTTCCTT+AGG - chr7_2:80363860-80363879 None:intergenic 30.0%
! AGGAAGTAATGAGTTTTCTA+AGG + chr7_2:80363861-80363880 Msa1080750:CDS 30.0%
!! AATTTCAACTTTTGAAAGGC+TGG + chr7_2:80363934-80363953 Msa1080750:CDS 30.0%
! TAACAACTCTGAAGATAGAA+GGG - chr7_2:80364102-80364121 None:intergenic 30.0%
! ATAACAACTCTGAAGATAGA+AGG - chr7_2:80364103-80364122 None:intergenic 30.0%
AAATATAAACATACCTCGTC+TGG - chr7_2:80364178-80364197 None:intergenic 30.0%
AGGTATGTTTATATTTACCG+TGG + chr7_2:80364182-80364201 Msa1080750:intron 30.0%
ATATTAGGAAAGACAAACCA+CGG - chr7_2:80364202-80364221 None:intergenic 30.0%
CACCCCATATAATGAATATT+AGG - chr7_2:80364217-80364236 None:intergenic 30.0%
TATCCAGAACCAGTAAAATA+AGG + chr7_2:80364378-80364397 Msa1080750:intron 30.0%
!!! AATCCTTATTTTACTGGTTC+TGG - chr7_2:80364384-80364403 None:intergenic 30.0%
!!! CATTGCAATCCTTATTTTAC+TGG - chr7_2:80364390-80364409 None:intergenic 30.0%
GGATAATGAAAAGATGCAAT+AGG + chr7_2:80364412-80364431 Msa1080750:intron 30.0%
! ATTTTTAACCACGATGTTAC+AGG - chr7_2:80364662-80364681 None:intergenic 30.0%
AAAAGATATCCTGCAAAACA+AGG - chr7_2:80364933-80364952 None:intergenic 30.0%
GTATAGACATATTACGGTAA+TGG + chr7_2:80365133-80365152 Msa1080750:intron 30.0%
TGATGACTTCTAACCAAAAT+AGG - chr7_2:80365352-80365371 None:intergenic 30.0%
! ATGGTCTTGAAAATAAAGTC+TGG - chr7_2:80365449-80365468 None:intergenic 30.0%
GAAAAGGAAAACTTCCAATA+AGG - chr7_2:80365619-80365638 None:intergenic 30.0%
ACTACTATGGCTTATCATAT+TGG + chr7_2:80365682-80365701 Msa1080750:CDS 30.0%
TTGACAAAAAAAGCTCTGTT+TGG - chr7_2:80366216-80366235 None:intergenic 30.0%
!!! AGAGCTAAAAGCTCTTTTTT+TGG + chr7_2:80366259-80366278 Msa1080750:intron 30.0%
!!! GAGCTAAAAGCTCTTTTTTT+GGG + chr7_2:80366260-80366279 Msa1080750:intron 30.0%
CTGCATCTATTCTCTTAAAA+TGG + chr7_2:80366477-80366496 Msa1080750:three_prime_UTR 30.0%
! GGATTGAAAGATTGAGTTTT+TGG + chr7_2:80366512-80366531 Msa1080750:three_prime_UTR 30.0%
CAAAATGTTCCTATCTCTTA+TGG - chr7_2:80366593-80366612 None:intergenic 30.0%
TGTATGTATTCTGATTCTGA+TGG + chr7_2:80366903-80366922 Msa1080750:three_prime_UTR 30.0%
! TTTTTCGTACAACTCGGATT+GGG - chr7_2:80361587-80361606 None:intergenic 35.0%
!!! TTTTTTCGTACAACTCGGAT+TGG - chr7_2:80361588-80361607 None:intergenic 35.0%
GTACGAAAAAATACTAACCG+AGG + chr7_2:80361597-80361616 Msa1080750:five_prime_UTR 35.0%
! TGTTGCATTTGCACTGTTTT+TGG - chr7_2:80361658-80361677 None:intergenic 35.0%
TCTTTGACGAAAACTTGAAG+AGG - chr7_2:80361883-80361902 None:intergenic 35.0%
!! GGTTTGTTTCCACTCTATTT+TGG + chr7_2:80362215-80362234 Msa1080750:intron 35.0%
TTAAGTGTTTGTGTCGTGTT+AGG - chr7_2:80362267-80362286 None:intergenic 35.0%
CACGACACAAACACTTAAAA+CGG + chr7_2:80362269-80362288 Msa1080750:intron 35.0%
TTGAATGTAATCACATGCGT+CGG + chr7_2:80362319-80362338 Msa1080750:intron 35.0%
TTTCCCTTCTGTAGTTAGAT+AGG + chr7_2:80362363-80362382 Msa1080750:intron 35.0%
GATTCCTATCTAACTACAGA+AGG - chr7_2:80362370-80362389 None:intergenic 35.0%
ATGCGCATATATCTTCCTAA+AGG - chr7_2:80362453-80362472 None:intergenic 35.0%
TCGAATTGTTGTATTACCTC+CGG + chr7_2:80362496-80362515 Msa1080750:intron 35.0%
AGTTATCTGACAGCATAACT+TGG - chr7_2:80362563-80362582 None:intergenic 35.0%
ACATGAATAACAATGCCACT+TGG + chr7_2:80362683-80362702 Msa1080750:intron 35.0%
! CATGAATAACAATGCCACTT+GGG + chr7_2:80362684-80362703 Msa1080750:intron 35.0%
! ATGAATAACAATGCCACTTG+GGG + chr7_2:80362685-80362704 Msa1080750:intron 35.0%
CATCATATTCATGCTCTAGT+CGG + chr7_2:80362723-80362742 Msa1080750:intron 35.0%
AAGTGCTTCCTTGAAAAGAT+CGG - chr7_2:80362769-80362788 None:intergenic 35.0%
! AAATGGACTCATGGGTTTAA+GGG - chr7_2:80363039-80363058 None:intergenic 35.0%
! AAAATGGACTCATGGGTTTA+AGG - chr7_2:80363040-80363059 None:intergenic 35.0%
! GGTTGATTTCATTGATGAGT+TGG - chr7_2:80363087-80363106 None:intergenic 35.0%
!! TTTCTTTGTTTCTACGGAGT+TGG - chr7_2:80363145-80363164 None:intergenic 35.0%
TAGCACTCCAACAACATAAA+AGG - chr7_2:80363201-80363220 None:intergenic 35.0%
!! TTTTATGTTGTTGGAGTGCT+AGG + chr7_2:80363200-80363219 Msa1080750:intron 35.0%
! ATTCTATTAAGGAGCACGAA+TGG + chr7_2:80363473-80363492 Msa1080750:intron 35.0%
TTGGAAAGAAAAAGCGAGAA+AGG + chr7_2:80363527-80363546 Msa1080750:intron 35.0%
TGGAAAGAAAAAGCGAGAAA+GGG + chr7_2:80363528-80363547 Msa1080750:intron 35.0%
TTCAACTCCATCATCAAGAT+GGG - chr7_2:80363783-80363802 None:intergenic 35.0%
AGAAGTCACATTTGAACCTA+AGG + chr7_2:80363841-80363860 Msa1080750:CDS 35.0%
TAAGCGAAAGTTAGGATCAA+TGG + chr7_2:80364033-80364052 Msa1080750:CDS 35.0%
AAGCGAAAGTTAGGATCAAT+GGG + chr7_2:80364034-80364053 Msa1080750:CDS 35.0%
AAAGTTAGGATCAATGGGAA+TGG + chr7_2:80364039-80364058 Msa1080750:CDS 35.0%
!!! TTTTGGGATGCTTATGTATC+AGG + chr7_2:80364286-80364305 Msa1080750:intron 35.0%
ATCCACACTACTATCAACTA+CGG - chr7_2:80364710-80364729 None:intergenic 35.0%
!! TAGTTGATAGTAGTGTGGAT+TGG + chr7_2:80364710-80364729 Msa1080750:intron 35.0%
!! GTTCTTTGGTTCTCTACTAA+TGG + chr7_2:80364819-80364838 Msa1080750:intron 35.0%
TGTGTACTTCTTTAACAGAG+TGG + chr7_2:80365071-80365090 Msa1080750:intron 35.0%
!!! AGTTTTTTATCCTACACTGC+AGG + chr7_2:80365223-80365242 Msa1080750:intron 35.0%
!! ATAGCTCTGCAGTATTTTCT+TGG + chr7_2:80365257-80365276 Msa1080750:CDS 35.0%
AATACAGTGATGTTTCAGCT+TGG - chr7_2:80365286-80365305 None:intergenic 35.0%
AACATCACTGTATTCTCTTG+TGG + chr7_2:80365292-80365311 Msa1080750:CDS 35.0%
! GCATATCGTGATACCTATTT+TGG + chr7_2:80365336-80365355 Msa1080750:intron 35.0%
!!! CTTTATTTTCAAGACCATGC+AGG + chr7_2:80365451-80365470 Msa1080750:CDS 35.0%
!! GGTTGACAGGATTTTTGAAA+AGG - chr7_2:80365635-80365654 None:intergenic 35.0%
! ATTCTGGTCCTTTGAAGATA+TGG - chr7_2:80365656-80365675 None:intergenic 35.0%
CCATAGTAGTATCTGAATTC+TGG - chr7_2:80365672-80365691 None:intergenic 35.0%
CCAGAATTCAGATACTACTA+TGG + chr7_2:80365669-80365688 Msa1080750:CDS 35.0%
GATCACACTGACGATTATTT+AGG + chr7_2:80365725-80365744 Msa1080750:exon 35.0%
TAGAAGTTCCACAGCAATTA+TGG - chr7_2:80365762-80365781 None:intergenic 35.0%
ATAATTGCTGTGGAACTTCT+AGG + chr7_2:80365761-80365780 Msa1080750:intron 35.0%
ATCAACGTTCTCCATTTCAT+TGG + chr7_2:80365784-80365803 Msa1080750:intron 35.0%
! CATGAGTATTGCCAATGAAA+TGG - chr7_2:80365798-80365817 None:intergenic 35.0%
GTAATCACATGTACTAGTGT+CGG - chr7_2:80365876-80365895 None:intergenic 35.0%
! GATAAGCTAGTTGAAGTGTT+TGG + chr7_2:80366020-80366039 Msa1080750:intron 35.0%
ACGAGCTTATAGCTTATTTC+AGG - chr7_2:80366168-80366187 None:intergenic 35.0%
AATCACTACACCAGTGATAA+AGG - chr7_2:80366355-80366374 None:intergenic 35.0%
TCAGGAAATGAATTAGCACA+TGG + chr7_2:80366433-80366452 Msa1080750:intron 35.0%
TTAAAATGGCGCATATCACA+TGG + chr7_2:80366491-80366510 Msa1080750:three_prime_UTR 35.0%
!! AAGATTGAGTTTTTGGATGC+TGG + chr7_2:80366519-80366538 Msa1080750:three_prime_UTR 35.0%
!! AGATTGAGTTTTTGGATGCT+GGG + chr7_2:80366520-80366539 Msa1080750:three_prime_UTR 35.0%
AGGACAAAACCATAAGAGAT+AGG + chr7_2:80366581-80366600 Msa1080750:three_prime_UTR 35.0%
! TTTTGACCTTTTATGCATGC+TGG + chr7_2:80366608-80366627 Msa1080750:three_prime_UTR 35.0%
!!! GGTATTGAAAGTTGCTTTTG+TGG + chr7_2:80366871-80366890 Msa1080750:three_prime_UTR 35.0%
ATGTATTCTGATTCTGATGG+AGG + chr7_2:80366906-80366925 Msa1080750:three_prime_UTR 35.0%
GGGCCTTTACCGTTAAAAAA+AGG + chr7_2:80361561-80361580 Msa1080750:five_prime_UTR 40.0%
!!! GGGCCTTTTTTTAACGGTAA+AGG - chr7_2:80361567-80361586 None:intergenic 40.0%
!!! CGGATTGGGCCTTTTTTTAA+CGG - chr7_2:80361573-80361592 None:intergenic 40.0%
CGAAAAAATACTAACCGAGG+AGG + chr7_2:80361600-80361619 Msa1080750:five_prime_UTR 40.0%
GATGGTAGCAAAGAGATAGT+GGG - chr7_2:80361628-80361647 None:intergenic 40.0%
!!! TTTGCACTGTTTTTGGTGCT+GGG - chr7_2:80361651-80361670 None:intergenic 40.0%
!!! ATTTGCACTGTTTTTGGTGC+TGG - chr7_2:80361652-80361671 None:intergenic 40.0%
TTTAAAGACCTTCGATCCCT+CGG + chr7_2:80361925-80361944 Msa1080750:CDS 40.0%
AAACTGAAAACGCATACCGA+GGG - chr7_2:80361944-80361963 None:intergenic 40.0%
! TGATTTCGCGATTAGGGTTT+TGG + chr7_2:80361984-80362003 Msa1080750:intron 40.0%
!! GATTAGGGTTTTGGTATCGT+CGG + chr7_2:80361993-80362012 Msa1080750:intron 40.0%
AGCTGGAGTTCTTAGTGAAA+CGG + chr7_2:80362066-80362085 Msa1080750:CDS 40.0%
TTTCCAAGCATAGGCAACAA+CGG - chr7_2:80362149-80362168 None:intergenic 40.0%
AACAAACCTAGTCCTGTCAA+CGG - chr7_2:80362203-80362222 None:intergenic 40.0%
!!! TTCCACTCTATTTTGGTTCG+TGG + chr7_2:80362222-80362241 Msa1080750:intron 40.0%
GATATATGCGCATAGTTGAG+AGG + chr7_2:80362460-80362479 Msa1080750:intron 40.0%
!! CTACTGCTTGCTATGAATTC+CGG - chr7_2:80362518-80362537 None:intergenic 40.0%
GATTGTTAATGCAAGGGTCA+AGG + chr7_2:80362647-80362666 Msa1080750:intron 40.0%
!! AATGTGTGCCGATCTTTTCA+AGG + chr7_2:80362758-80362777 Msa1080750:intron 40.0%
!!! CTTTTCAAGGAAGCACTTAC+CGG + chr7_2:80362771-80362790 Msa1080750:intron 40.0%
ACGGAGTTGGAATTTGGTTA+TGG - chr7_2:80363132-80363151 None:intergenic 40.0%
GTTTCTACGGAGTTGGAATT+TGG - chr7_2:80363138-80363157 None:intergenic 40.0%
CCATGCATAGGCTTATTTGT+TGG - chr7_2:80363499-80363518 None:intergenic 40.0%
CCAACAAATAAGCCTATGCA+TGG + chr7_2:80363496-80363515 Msa1080750:intron 40.0%
CCAAAACTTCAACCATGCAT+AGG - chr7_2:80363511-80363530 None:intergenic 40.0%
! CCTATGCATGGTTGAAGTTT+TGG + chr7_2:80363508-80363527 Msa1080750:intron 40.0%
GTGAGCAGCTAATGTAACAT+GGG - chr7_2:80363694-80363713 None:intergenic 40.0%
AGTGAGCAGCTAATGTAACA+TGG - chr7_2:80363695-80363714 None:intergenic 40.0%
GTTACATTAGCTGCTCACTT+AGG + chr7_2:80363696-80363715 Msa1080750:intron 40.0%
! TTTTTCCCCCATCTTGATGA+TGG + chr7_2:80363773-80363792 Msa1080750:CDS 40.0%
TCAACTCCATCATCAAGATG+GGG - chr7_2:80363782-80363801 None:intergenic 40.0%
CTTCAACTCCATCATCAAGA+TGG - chr7_2:80363784-80363803 None:intergenic 40.0%
!! TCAGATTCAAAGAAGCGTTG+TGG + chr7_2:80363812-80363831 Msa1080750:CDS 40.0%
!! CAGATTCAAAGAAGCGTTGT+GGG + chr7_2:80363813-80363832 Msa1080750:CDS 40.0%
! ATTTGGCACTTCCTTTTCCA+AGG - chr7_2:80363909-80363928 None:intergenic 40.0%
! AGAACTCTCATTTGGTGAAG+AGG - chr7_2:80363987-80364006 None:intergenic 40.0%
TTCACCAAATGAGAGTTCTG+AGG + chr7_2:80363988-80364007 Msa1080750:CDS 40.0%
TGTTCCTCAGAACTCTCATT+TGG - chr7_2:80363995-80364014 None:intergenic 40.0%
TCTGAGGAACATAACTATCG+TGG + chr7_2:80364004-80364023 Msa1080750:CDS 40.0%
! GGTTCTAGTAAGCGAAAGTT+AGG + chr7_2:80364025-80364044 Msa1080750:CDS 40.0%
AGAAAAGAAAGCGACAGCAT+CGG - chr7_2:80364155-80364174 None:intergenic 40.0%
!! TAATGACTCGGCGTTAGTTT+TGG + chr7_2:80364269-80364288 Msa1080750:intron 40.0%
!!! AATGACTCGGCGTTAGTTTT+GGG + chr7_2:80364270-80364289 Msa1080750:intron 40.0%
CATTGAGAGAGAAAGCTACA+GGG - chr7_2:80364511-80364530 None:intergenic 40.0%
TCATTGAGAGAGAAAGCTAC+AGG - chr7_2:80364512-80364531 None:intergenic 40.0%
TTCTCTCTCAATGACCATCT+TGG + chr7_2:80364518-80364537 Msa1080750:intron 40.0%
!!! TTATTTTGAATCATGGCGCC+AGG + chr7_2:80364636-80364655 Msa1080750:intron 40.0%
ATGGCAGCTGAATTAGAGAT+GGG - chr7_2:80364762-80364781 None:intergenic 40.0%
TATGGCAGCTGAATTAGAGA+TGG - chr7_2:80364763-80364782 None:intergenic 40.0%
TCTACTAATGGCCGTTTGAA+GGG + chr7_2:80364831-80364850 Msa1080750:intron 40.0%
AGATGTCAACTCCCTTCAAA+CGG - chr7_2:80364845-80364864 None:intergenic 40.0%
!!! TTGCTTTGTCCTTGTTTTGC+AGG + chr7_2:80364921-80364940 Msa1080750:intron 40.0%
CACTTCAAACAGTCACTCAA+AGG - chr7_2:80365190-80365209 None:intergenic 40.0%
CATCATTCTTGACATACTCG+AGG + chr7_2:80365367-80365386 Msa1080750:intron 40.0%
AGGAAAACTTCCAATAAGGC+CGG - chr7_2:80365615-80365634 None:intergenic 40.0%
! CCTTTGAAGATATGGTTGAC+AGG - chr7_2:80365648-80365667 None:intergenic 40.0%
CCTGTCAACCATATCTTCAA+AGG + chr7_2:80365645-80365664 Msa1080750:CDS 40.0%
TCAGTGTGATCATACTTCCT+CGG - chr7_2:80365716-80365735 None:intergenic 40.0%
GTTAAGTGCCATAATTGCTG+TGG + chr7_2:80365751-80365770 Msa1080750:intron 40.0%
ACAACTTCAACCTGAAGTGT+CGG - chr7_2:80365826-80365845 None:intergenic 40.0%
GGTAACACAAAAGCTCTGTT+TGG - chr7_2:80366195-80366214 None:intergenic 40.0%
ACTAACATGTAGGCTCTGTT+TGG - chr7_2:80366290-80366309 None:intergenic 40.0%
!!! TCTCTTATGGTTTTGTCCTG+TGG - chr7_2:80366580-80366599 None:intergenic 40.0%
TTCCATCCAGCATGCATAAA+AGG - chr7_2:80366617-80366636 None:intergenic 40.0%
CAGAGAAGATAGAGATGTGT+AGG - chr7_2:80366729-80366748 None:intergenic 40.0%
CTCAGTCCTAGATTCTCAAT+TGG - chr7_2:80366805-80366824 None:intergenic 40.0%
! CAATTGAGAATCTAGGACTG+AGG + chr7_2:80366803-80366822 Msa1080750:three_prime_UTR 40.0%
GGATGGTAGCAAAGAGATAG+TGG - chr7_2:80361629-80361648 None:intergenic 45.0%
!!! TTGCACTGTTTTTGGTGCTG+GGG - chr7_2:80361650-80361669 None:intergenic 45.0%
ATAGCTAGAGCAACCTGCTT+CGG - chr7_2:80361751-80361770 None:intergenic 45.0%
GCTCTAGCTATGGACAAACT+CGG + chr7_2:80361760-80361779 Msa1080750:CDS 45.0%
AGAGGCTTATTGCCTTGATG+AGG - chr7_2:80361865-80361884 None:intergenic 45.0%
GAAACTGAAAACGCATACCG+AGG - chr7_2:80361945-80361964 None:intergenic 45.0%
GAGTTCTTAGTGAAACGGCA+CGG + chr7_2:80362071-80362090 Msa1080750:CDS 45.0%
! ACGGTCACGGAAGGATTTTT+GGG + chr7_2:80362090-80362109 Msa1080750:CDS 45.0%
! GAGTTGTCGTTTCCAAGCAT+AGG - chr7_2:80362158-80362177 None:intergenic 45.0%
GACCACGAACCAAAATAGAG+TGG - chr7_2:80362227-80362246 None:intergenic 45.0%
CAACTCCATCATCAAGATGG+GGG - chr7_2:80363781-80363800 None:intergenic 45.0%
TGTTCTGCAGTCCTTGGAAA+AGG + chr7_2:80363895-80363914 Msa1080750:CDS 45.0%
!! CAACTTTTGAAAGGCTGGAC+TGG + chr7_2:80363939-80363958 Msa1080750:CDS 45.0%
! ATTTGGTGAAGAGGTGAGTG+TGG - chr7_2:80363978-80363997 None:intergenic 45.0%
TCTATGACTGCAACCTTCTC+TGG - chr7_2:80364070-80364089 None:intergenic 45.0%
GTTATATCCTTGCATCCTGC+TGG + chr7_2:80364118-80364137 Msa1080750:CDS 45.0%
GAAAAGAAAGCGACAGCATC+GGG - chr7_2:80364154-80364173 None:intergenic 45.0%
GGGGTGTGAACTATTTGTTC+TGG + chr7_2:80364231-80364250 Msa1080750:intron 45.0%
GGTTGGGAAACAGTTAGACT+TGG - chr7_2:80364462-80364481 None:intergenic 45.0%
AGTTATGCAGAGTGGAGGTT+GGG - chr7_2:80364478-80364497 None:intergenic 45.0%
GTTGCAACTTTCTGCCAAGA+TGG - chr7_2:80364535-80364554 None:intergenic 45.0%
TCTCTTCTTTCTCCTCCCAT+TGG + chr7_2:80364594-80364613 Msa1080750:intron 45.0%
CTCTTCTTTCTCCTCCCATT+GGG + chr7_2:80364595-80364614 Msa1080750:intron 45.0%
CAACTACGGCTTCAAAAGAG+AGG - chr7_2:80364696-80364715 None:intergenic 45.0%
!! AGCCGTAGTTGATAGTAGTG+TGG + chr7_2:80364705-80364724 Msa1080750:intron 45.0%
CTCTACTAATGGCCGTTTGA+AGG + chr7_2:80364830-80364849 Msa1080750:intron 45.0%
TTTGCAGAGACTAGACAGAG+TGG + chr7_2:80364869-80364888 Msa1080750:intron 45.0%
TGGAAGCTATGTGCATGCAA+GGG + chr7_2:80365091-80365110 Msa1080750:CDS 45.0%
ACAGTCACTCAAAGGATCAC+AGG - chr7_2:80365182-80365201 None:intergenic 45.0%
GTTGCATATTCCTGCAGTGT+AGG - chr7_2:80365236-80365255 None:intergenic 45.0%
! TTTCCTTTTCCCTGTAGCAC+TGG + chr7_2:80365412-80365431 Msa1080750:intron 45.0%
AATCCAGTGCTACAGGGAAA+AGG - chr7_2:80365418-80365437 None:intergenic 45.0%
AACTGCAAATCGAACCTGCA+TGG - chr7_2:80365468-80365487 None:intergenic 45.0%
AAAACTTCCAATAAGGCCGG+TGG - chr7_2:80365612-80365631 None:intergenic 45.0%
ACAGACACATGTCAGCAACT+TGG - chr7_2:80365851-80365870 None:intergenic 45.0%
AAGACCTGGCACTAACATGT+AGG - chr7_2:80366300-80366319 None:intergenic 45.0%
ATGAAGCAGCGAAAAAGACC+TGG - chr7_2:80366314-80366333 None:intergenic 45.0%
ACCAGTGATAAAGGAGGAAG+GGG - chr7_2:80366346-80366365 None:intergenic 45.0%
CACCAGTGATAAAGGAGGAA+GGG - chr7_2:80366347-80366366 None:intergenic 45.0%
ACACCAGTGATAAAGGAGGA+AGG - chr7_2:80366348-80366367 None:intergenic 45.0%
CACTACACCAGTGATAAAGG+AGG - chr7_2:80366352-80366371 None:intergenic 45.0%
GCAGGCAATGATCAATGTCA+GGG - chr7_2:80366558-80366577 None:intergenic 45.0%
!!! TTATGGTTTTGTCCTGTGGC+AGG - chr7_2:80366576-80366595 None:intergenic 45.0%
! GACCTTTTATGCATGCTGGA+TGG + chr7_2:80366612-80366631 Msa1080750:three_prime_UTR 45.0%
!! AGAGATAGTGGGATCCTCCT+CGG - chr7_2:80361617-80361636 None:intergenic 50.0%
!!! ACTGTTTTTGGTGCTGGGGA+TGG - chr7_2:80361646-80361665 None:intergenic 50.0%
GCAACAAACTCAGCAAGCCA+CGG + chr7_2:80361672-80361691 Msa1080750:CDS 50.0%
GAAGCAGGTTGCTCTAGCTA+TGG + chr7_2:80361750-80361769 Msa1080750:CDS 50.0%
GATGTCGGCGATGATACGTT+CGG - chr7_2:80361791-80361810 None:intergenic 50.0%
ATCATCGCCGACATCCGAAT+TGG + chr7_2:80361796-80361815 Msa1080750:CDS 50.0%
ATCAGCGCCAATTCGGATGT+CGG - chr7_2:80361806-80361825 None:intergenic 50.0%
CAGCGATGAATAGAGCTTCG+AGG - chr7_2:80361834-80361853 None:intergenic 50.0%
GAAGCTCTATTCATCGCTGC+TGG + chr7_2:80361835-80361854 Msa1080750:CDS 50.0%
GGAAAGGAGCTTGAAGAAGC+TGG + chr7_2:80362049-80362068 Msa1080750:intron 50.0%
TTAGTGAAACGGCACGGTCA+CGG + chr7_2:80362077-80362096 Msa1080750:CDS 50.0%
! CACGGTCACGGAAGGATTTT+TGG + chr7_2:80362089-80362108 Msa1080750:CDS 50.0%
! CGGTCACGGAAGGATTTTTG+GGG + chr7_2:80362091-80362110 Msa1080750:CDS 50.0%
TGTCGTGTTAGGAGTCTGCT+AGG - chr7_2:80362256-80362275 None:intergenic 50.0%
!! CTGCTTGCTATGAATTCCGG+AGG - chr7_2:80362515-80362534 None:intergenic 50.0%
ACACAACTCAGGCACGTATG+AGG - chr7_2:80362587-80362606 None:intergenic 50.0%
TCGGCACACATTCATGTGAC+TGG - chr7_2:80362750-80362769 None:intergenic 50.0%
ACCAGATGTTCTGCAGTCCT+TGG + chr7_2:80363889-80363908 Msa1080750:CDS 50.0%
TCCAAGGACTGCAGAACATC+TGG - chr7_2:80363893-80363912 None:intergenic 50.0%
AATGGAACCAGCAGGATGCA+AGG - chr7_2:80364128-80364147 None:intergenic 50.0%
! CGCTTTCTTTTCTCCAGACG+AGG + chr7_2:80364162-80364181 Msa1080750:CDS 50.0%
CAGTTATGCAGAGTGGAGGT+TGG - chr7_2:80364479-80364498 None:intergenic 50.0%
ATGGCAGTTATGCAGAGTGG+AGG - chr7_2:80364483-80364502 None:intergenic 50.0%
TGCATGGCAGTTATGCAGAG+TGG - chr7_2:80364486-80364505 None:intergenic 50.0%
TTCTTTCTCCTCCCATTGGG+AGG + chr7_2:80364598-80364617 Msa1080750:intron 50.0%
AGTCTATGGCTCCTCCCAAT+GGG - chr7_2:80364612-80364631 None:intergenic 50.0%
AAGTCTATGGCTCCTCCCAA+TGG - chr7_2:80364613-80364632 None:intergenic 50.0%
TAACCACGATGTTACAGGCC+TGG - chr7_2:80364657-80364676 None:intergenic 50.0%
GTGGAAGCTATGTGCATGCA+AGG + chr7_2:80365090-80365109 Msa1080750:CDS 50.0%
GGAAGCTATGTGCATGCAAG+GGG + chr7_2:80365092-80365111 Msa1080750:CDS 50.0%
GAAGCTATGTGCATGCAAGG+GGG + chr7_2:80365093-80365112 Msa1080750:CDS 50.0%
AAGCTATGTGCATGCAAGGG+GGG + chr7_2:80365094-80365113 Msa1080750:CDS 50.0%
GCTGCAAATCCAGTGCTACA+GGG - chr7_2:80365424-80365443 None:intergenic 50.0%
AGCTGCAAATCCAGTGCTAC+AGG - chr7_2:80365425-80365444 None:intergenic 50.0%
TATTGTTAGCCCCAGTCCAC+CGG + chr7_2:80365593-80365612 Msa1080750:CDS 50.0%
! TCATATTGGCTGCATCTCCG+AGG + chr7_2:80365696-80365715 Msa1080750:CDS 50.0%
!! TCATGTAGCACCGACACTTC+AGG + chr7_2:80365813-80365832 Msa1080750:intron 50.0%
CTGATGTCTACGGCTCTGTT+TGG + chr7_2:80365927-80365946 Msa1080750:intron 50.0%
AGAGCCTACATGTTAGTGCC+AGG + chr7_2:80366293-80366312 Msa1080750:intron 50.0%
CCAGTGATAAAGGAGGAAGG+GGG - chr7_2:80366345-80366364 None:intergenic 50.0%
GGCAGGCAATGATCAATGTC+AGG - chr7_2:80366559-80366578 None:intergenic 50.0%
CATTGATCATTGCCTGCCAC+AGG + chr7_2:80366561-80366580 Msa1080750:three_prime_UTR 50.0%
AGGGGGCCAATTGAGAATCT+AGG + chr7_2:80366796-80366815 Msa1080750:three_prime_UTR 50.0%
GGTGGATGCAAATGTTGCTG+TGG + chr7_2:80366850-80366869 Msa1080750:three_prime_UTR 50.0%
ACAAACTCAGCAAGCCACGG+CGG + chr7_2:80361675-80361694 Msa1080750:CDS 55.0%
GGAGACGATCAGCGCCAATT+CGG - chr7_2:80361813-80361832 None:intergenic 55.0%
GCTGCTGGTCAACCTCATCA+AGG + chr7_2:80361850-80361869 Msa1080750:CDS 55.0%
AACGCATACCGAGGGATCGA+AGG - chr7_2:80361936-80361955 None:intergenic 55.0%
TTGGGGATTGCATATGCCGC+TGG + chr7_2:80362108-80362127 Msa1080750:CDS 55.0%
!! ATGCCGCTGGTTTGTCCAGA+TGG + chr7_2:80362121-80362140 Msa1080750:CDS 55.0%
GCACCATCTGGACAAACCAG+CGG - chr7_2:80362127-80362146 None:intergenic 55.0%
TAGGCAACAACGGCACCATC+TGG - chr7_2:80362139-80362158 None:intergenic 55.0%
! GTGCCGTTGTTGCCTATGCT+TGG + chr7_2:80362143-80362162 Msa1080750:CDS 55.0%
GCTTGGAAACGACAACTCGC+CGG + chr7_2:80362160-80362179 Msa1080750:CDS 55.0%
CTTCTGCCGTTGACAGGACT+AGG + chr7_2:80362194-80362213 Msa1080750:intron 55.0%
GGGAATGGTTGCTCCAGAGA+AGG + chr7_2:80364054-80364073 Msa1080750:CDS 55.0%
TCGGGATCAATGGAACCAGC+AGG - chr7_2:80364136-80364155 None:intergenic 55.0%
! AGCGACAGCATCGGGATCAA+TGG - chr7_2:80364146-80364165 None:intergenic 55.0%
AGAAAGCTACAGGGCGTGCA+TGG - chr7_2:80364502-80364521 None:intergenic 55.0%
! TCCAATAAGGCCGGTGGACT+GGG - chr7_2:80365606-80365625 None:intergenic 55.0%
TTCCAATAAGGCCGGTGGAC+TGG - chr7_2:80365607-80365626 None:intergenic 55.0%
CCCCCTTCCTCCTTTATCAC+TGG + chr7_2:80366342-80366361 Msa1080750:intron 55.0%
GGTTGAGAAAGTTGCCGCCG+TGG - chr7_2:80361692-80361711 None:intergenic 60.0%
GCTAGAGCAACCTGCTTCGG+AGG - chr7_2:80361748-80361767 None:intergenic 60.0%
TGAAACGGCACGGTCACGGA+AGG + chr7_2:80362081-80362100 Msa1080750:CDS 60.0%
GGCAGAAGCTCCAGCTTGAC+CGG - chr7_2:80362182-80362201 None:intergenic 60.0%
CTGGAGCTTCTGCCGTTGAC+AGG + chr7_2:80362188-80362207 Msa1080750:intron 60.0%
TGAGCTCGCATCACCCCAAG+TGG - chr7_2:80362701-80362720 None:intergenic 60.0%
CTATGGCTCCTCCCAATGGG+AGG - chr7_2:80364609-80364628 None:intergenic 60.0%
!! CCAATAAGGCCGGTGGACTG+GGG - chr7_2:80365605-80365624 None:intergenic 60.0%
TGGAGGAGGGAGGAGGAGTG+GGG - chr7_2:80361714-80361733 None:intergenic 65.0%
GTGGAGGAGGGAGGAGGAGT+GGG - chr7_2:80361715-80361734 None:intergenic 65.0%
!! CTGCTTCGGAGGTGCTTCCG+CGG - chr7_2:80361737-80361756 None:intergenic 65.0%
CGACAACTCGCCGGTCAAGC+TGG + chr7_2:80362169-80362188 Msa1080750:CDS 65.0%
GCGCCAGGCCTGTAACATCG+TGG + chr7_2:80364651-80364670 Msa1080750:intron 65.0%
! CCCCAGTCCACCGGCCTTAT+TGG + chr7_2:80365602-80365621 Msa1080750:CDS 65.0%
GGAGGAGGGAGGAGGAGTGG+GGG - chr7_2:80361713-80361732 None:intergenic 70.0%
GGTGGAGGAGGGAGGAGGAG+TGG - chr7_2:80361716-80361735 None:intergenic 70.0%
TCCTCCTCCCTCCTCCACCG+CGG + chr7_2:80361717-80361736 Msa1080750:CDS 70.0%
GGTGCTTCCGCGGTGGAGGA+GGG - chr7_2:80361727-80361746 None:intergenic 70.0%
AGGTGCTTCCGCGGTGGAGG+AGG - chr7_2:80361728-80361747 None:intergenic 70.0%
!! CTTCGGAGGTGCTTCCGCGG+TGG - chr7_2:80361734-80361753 None:intergenic 70.0%
!! CGCGGAAGCACCTCCGAAGC+AGG + chr7_2:80361735-80361754 Msa1080750:CDS 70.0%
TCCGCGGTGGAGGAGGGAGG+AGG - chr7_2:80361721-80361740 None:intergenic 75.0%
GCTTCCGCGGTGGAGGAGGG+AGG - chr7_2:80361724-80361743 None:intergenic 75.0%
!! CGGAGGTGCTTCCGCGGTGG+AGG - chr7_2:80361731-80361750 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 80361545 80366966 80361545 ID=Msa1080750;Name=Msa1080750
chr7_2 mRNA 80361545 80366966 80361545 ID=Msa1080750-mRNA-1;Parent=Msa1080750;Name=Msa1080750-mRNA-1;_AED=0.09;_eAED=0.09;_QI=125|0.85|0.75|1|1|0.87|8|550|398
chr7_2 exon 80361545 80361946 80361545 ID=Msa1080750-mRNA-1:exon:20312;Parent=Msa1080750-mRNA-1
chr7_2 exon 80362050 80362201 80362050 ID=Msa1080750-mRNA-1:exon:20313;Parent=Msa1080750-mRNA-1
chr7_2 exon 80363764 80364183 80363764 ID=Msa1080750-mRNA-1:exon:20314;Parent=Msa1080750-mRNA-1
chr7_2 exon 80365089 80365148 80365089 ID=Msa1080750-mRNA-1:exon:20315;Parent=Msa1080750-mRNA-1
chr7_2 exon 80365245 80365313 80365245 ID=Msa1080750-mRNA-1:exon:20316;Parent=Msa1080750-mRNA-1
chr7_2 exon 80365429 80365472 80365429 ID=Msa1080750-mRNA-1:exon:20317;Parent=Msa1080750-mRNA-1
chr7_2 exon 80365552 80365746 80365552 ID=Msa1080750-mRNA-1:exon:20318;Parent=Msa1080750-mRNA-1
chr7_2 exon 80366437 80366966 80366437 ID=Msa1080750-mRNA-1:exon:20319;Parent=Msa1080750-mRNA-1
chr7_2 five_prime_UTR 80361545 80361669 80361545 ID=Msa1080750-mRNA-1:five_prime_utr;Parent=Msa1080750-mRNA-1
chr7_2 CDS 80361670 80361946 80361670 ID=Msa1080750-mRNA-1:cds;Parent=Msa1080750-mRNA-1
chr7_2 CDS 80362050 80362201 80362050 ID=Msa1080750-mRNA-1:cds;Parent=Msa1080750-mRNA-1
chr7_2 CDS 80363764 80364183 80363764 ID=Msa1080750-mRNA-1:cds;Parent=Msa1080750-mRNA-1
chr7_2 CDS 80365089 80365148 80365089 ID=Msa1080750-mRNA-1:cds;Parent=Msa1080750-mRNA-1
chr7_2 CDS 80365245 80365313 80365245 ID=Msa1080750-mRNA-1:cds;Parent=Msa1080750-mRNA-1
chr7_2 CDS 80365429 80365472 80365429 ID=Msa1080750-mRNA-1:cds;Parent=Msa1080750-mRNA-1
chr7_2 CDS 80365552 80365726 80365552 ID=Msa1080750-mRNA-1:cds;Parent=Msa1080750-mRNA-1
chr7_2 three_prime_UTR 80365727 80365746 80365727 ID=Msa1080750-mRNA-1:three_prime_utr;Parent=Msa1080750-mRNA-1
chr7_2 three_prime_UTR 80366437 80366966 80366437 ID=Msa1080750-mRNA-1:three_prime_utr;Parent=Msa1080750-mRNA-1
Gene Sequence

>Msa1080750

ATGCAACAAACTCAGCAAGCCACGGCGGCAACTTTCTCAACCCCCACTCCTCCTCCCTCCTCCACCGCGGAAGCACCTCCGAAGCAGGTTGCTCTAGCTATGGACAAACTCGGTCAAGCCGAACGTATCATCGCCGACATCCGAATTGGCGCTGATCGTCTCCTCGAAGCTCTATTCATCGCTGCTGGTCAACCTCATCAAGGCAATAAGCCTCTTCAAGTTTTCGTCAAAGAGAATGCTTCTATGCAACAGCATTTTAAAGACCTTCGATCCCTCGGAAAGGAGCTTGAAGAAGCTGGAGTTCTTAGTGAAACGGCACGGTCACGGAAGGATTTTTGGGGATTGCATATGCCGCTGGTTTGTCCAGATGGTGCCGTTGTTGCCTATGCTTGGAAACGACAACTCGCCGGTCAAGCTGGAGCTTCTGCCAAAAGACGTTTTTTCCCCCATCTTGATGATGGAGTTGAAGCTAATGAATCAGATTCAAAGAAGCGTTGTGGGTCTGAAGAAGTCACATTTGAACCTAAGGAAGTAATGAGTTTTCTAAGGACGCTACCAGATGTTCTGCAGTCCTTGGAAAAGGAAGTGCCAAATGTGAAAATTTCAACTTTTGAAAGGCTGGACTGGTTAAAATGTGCTTCCACACTCACCTCTTCACCAAATGAGAGTTCTGAGGAACATAACTATCGTGGTTCTAGTAAGCGAAAGTTAGGATCAATGGGAATGGTTGCTCCAGAGAAGGTTGCAGTCATAGAATTGCTGTGCCCTTCTATCTTCAGAGTTGTTATATCCTTGCATCCTGCTGGTTCCATTGATCCCGATGCTGTCGCTTTCTTTTCTCCAGACGAGAGTGGAAGCTATGTGCATGCAAGGGGGGTTTCAGTTCATCATGTGTATAGACATATTACGGAATATGCAACGATAGCTCTGCAGTATTTTCTTGGTAACCAAGCTGAAACATCACTGTATTCTCTTGTGCACTGGATTTGCAGCTACCAGACTTTATTTTCAAGACCATGCAGCAAATGTAAAAAGCTACTTGCCATAGATAAGCAATCAAATTTATTGTTAGCCCCAGTCCACCGGCCTTATTGGAAGTTTTCCTTTTCAAAAATCCTGTCAACCATATCTTCAAAGGACCAGAATTCAGATACTACTATGGCTTATCATATTGGCTGCATCTCCGAGGAAGTATGA
Protein sequence

>Msa1080750

MQQTQQATAATFSTPTPPPSSTAEAPPKQVALAMDKLGQAERIIADIRIGADRLLEALFIAAGQPHQGNKPLQVFVKENASMQQHFKDLRSLGKELEEAGVLSETARSRKDFWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAKRRFFPHLDDGVEANESDSKKRCGSEEVTFEPKEVMSFLRTLPDVLQSLEKEVPNVKISTFERLDWLKCASTLTSSPNESSEEHNYRGSSKRKLGSMGMVAPEKVAVIELLCPSIFRVVISLHPAGSIDPDAVAFFSPDESGSYVHARGVSVHHVYRHITEYATIALQYFLGNQAETSLYSLVHWICSYQTLFSRPCSKCKKLLAIDKQSNLLLAPVHRPYWKFSFSKILSTISSKDQNSDTTMAYHIGCISEEV*