AlfalfaGEDB | Msa1080750

M. sativa cultivar zhongmu-4 / Msa1080750

KEGG: K15170
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013
PFAM: PF11571.11

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1080750	XP_013450209.1	96.359	412	1	1	1	398	1	412	0.0	819

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1080750	sp\|Q8RWM3\|MED27_ARATH	54.177	395	151	6	21	398	21	402	2.45e-145	421

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1080750	A0A072U3D2	96.359	412	1	1	1	398	1	412	0.0	819

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa1080750	0.805364	1.383735e-49	-8.615850e-47
Msa0023830	Msa1080750	0.808357	3.222370e-50	-8.615850e-47
Msa0145950	Msa1080750	-0.825448	4.661784e-54	-8.615850e-47
Msa0196020	Msa1080750	0.817738	2.822535e-52	-8.615850e-47
Msa0223100	Msa1080750	-0.835165	1.966621e-56	-8.615850e-47
Msa0223290	Msa1080750	-0.825434	4.697128e-54	-8.615850e-47
Msa0223380	Msa1080750	-0.804542	2.054602e-49	-8.615850e-47
Msa0275400	Msa1080750	0.854552	1.141153e-61	-8.615850e-47
Msa0295840	Msa1080750	-0.802551	5.316750e-49	-8.615850e-47
Msa0302650	Msa1080750	-0.838405	2.932311e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1080750	MtrunA17_Chr7g0267431	96.359	412	1	1	1	398	1	412	0.0	819

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1080750	AT3G09180.3	54.177	395	151	6	21	398	21	402	2.49e-146	421
Msa1080750	AT3G09180.1	54.177	395	151	6	21	398	21	402	2.49e-146	421
Msa1080750	AT3G09180.2	57.396	338	124	5	21	341	21	355	3.02e-133	386

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Find 128 sgRNAs with CRISPR-Local

Find 372 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTCCAATAAGGCCGG+TGG	0.654863	7_2:-80365609	None:intergenic
AAAGTTAGGATCAATGGGAA+TGG	0.607147	7_2:+80364039	Msa1080750:CDS
AAATATAAACATACCTCGTC+TGG	0.394897	7_2:-80364175	None:intergenic
AACATCACTGTATTCTCTTG+TGG	0.595886	7_2:+80365292	Msa1080750:CDS
AACGCATACCGAGGGATCGA+AGG	0.518466	7_2:-80361933	None:intergenic
AACTGCAAATCGAACCTGCA+TGG	0.565160	7_2:-80365465	None:intergenic
AAGCGAAAGTTAGGATCAAT+GGG	0.477448	7_2:+80364034	Msa1080750:CDS
AAGCTATGTGCATGCAAGGG+GGG	0.635832	7_2:+80365094	Msa1080750:CDS
AATACAGTGATGTTTCAGCT+TGG	0.576810	7_2:-80365283	None:intergenic
AATGGAACCAGCAGGATGCA+AGG	0.589922	7_2:-80364125	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTCCTATCTAACTACAGAA+GGG	-	chr7_2:80362369-80362388	None:intergenic	30.0%
TCCAAAGAAAAAAGAACCAA+TGG	+	chr7_2:80362393-80362412	Msa1080750:intron	30.0%
TGTTGTAGATTGTTAATGCA+AGG	+	chr7_2:80362640-80362659	Msa1080750:intron	30.0%
GTTGTAGATTGTTAATGCAA+GGG	+	chr7_2:80362641-80362660	Msa1080750:intron	30.0%
GAGTTGGGAATAAATGATTA+AGG	-	chr7_2:80363071-80363090	None:intergenic	30.0%
CAAAGAAAATCGAAGAAGAA+AGG	+	chr7_2:80363157-80363176	Msa1080750:intron	30.0%
TTGTCCCTTAACTTAATTTC+AGG	-	chr7_2:80363431-80363450	None:intergenic	30.0%
GCTCCTTAATAGAATTTCTT+TGG	-	chr7_2:80363468-80363487	None:intergenic	30.0%
TATTTCAGATTTGATTCAGG+TGG	+	chr7_2:80363593-80363612	Msa1080750:intron	30.0%
TATATACTCTTGGGATTTGT+CGG	+	chr7_2:80363637-80363656	Msa1080750:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	80361545	80366966	80361545	ID=Msa1080750;Name=Msa1080750
chr7_2	mRNA	80361545	80366966	80361545	ID=Msa1080750-mRNA-1;Parent=Msa1080750;Name=Msa1080750-mRNA-1;_AED=0.09;_eAED=0.09;_QI=125\|0.85\|0.75\|1\|1\|0.87\|8\|550\|398
chr7_2	exon	80361545	80361946	80361545	ID=Msa1080750-mRNA-1:exon:20312;Parent=Msa1080750-mRNA-1
chr7_2	exon	80362050	80362201	80362050	ID=Msa1080750-mRNA-1:exon:20313;Parent=Msa1080750-mRNA-1
chr7_2	exon	80363764	80364183	80363764	ID=Msa1080750-mRNA-1:exon:20314;Parent=Msa1080750-mRNA-1
chr7_2	exon	80365089	80365148	80365089	ID=Msa1080750-mRNA-1:exon:20315;Parent=Msa1080750-mRNA-1
chr7_2	exon	80365245	80365313	80365245	ID=Msa1080750-mRNA-1:exon:20316;Parent=Msa1080750-mRNA-1
chr7_2	exon	80365429	80365472	80365429	ID=Msa1080750-mRNA-1:exon:20317;Parent=Msa1080750-mRNA-1
chr7_2	exon	80365552	80365746	80365552	ID=Msa1080750-mRNA-1:exon:20318;Parent=Msa1080750-mRNA-1
chr7_2	exon	80366437	80366966	80366437	ID=Msa1080750-mRNA-1:exon:20319;Parent=Msa1080750-mRNA-1
chr7_2	five_prime_UTR	80361545	80361669	80361545	ID=Msa1080750-mRNA-1:five_prime_utr;Parent=Msa1080750-mRNA-1
chr7_2	CDS	80361670	80361946	80361670	ID=Msa1080750-mRNA-1:cds;Parent=Msa1080750-mRNA-1
chr7_2	CDS	80362050	80362201	80362050	ID=Msa1080750-mRNA-1:cds;Parent=Msa1080750-mRNA-1
chr7_2	CDS	80363764	80364183	80363764	ID=Msa1080750-mRNA-1:cds;Parent=Msa1080750-mRNA-1
chr7_2	CDS	80365089	80365148	80365089	ID=Msa1080750-mRNA-1:cds;Parent=Msa1080750-mRNA-1
chr7_2	CDS	80365245	80365313	80365245	ID=Msa1080750-mRNA-1:cds;Parent=Msa1080750-mRNA-1
chr7_2	CDS	80365429	80365472	80365429	ID=Msa1080750-mRNA-1:cds;Parent=Msa1080750-mRNA-1
chr7_2	CDS	80365552	80365726	80365552	ID=Msa1080750-mRNA-1:cds;Parent=Msa1080750-mRNA-1
chr7_2	three_prime_UTR	80365727	80365746	80365727	ID=Msa1080750-mRNA-1:three_prime_utr;Parent=Msa1080750-mRNA-1
chr7_2	three_prime_UTR	80366437	80366966	80366437	ID=Msa1080750-mRNA-1:three_prime_utr;Parent=Msa1080750-mRNA-1

Gene Sequence

>Msa1080750

ATGCAACAAACTCAGCAAGCCACGGCGGCAACTTTCTCAACCCCCACTCCTCCTCCCTCCTCCACCGCGGAAGCACCTCCGAAGCAGGTTGCTCTAGCTATGGACAAACTCGGTCAAGCCGAACGTATCATCGCCGACATCCGAATTGGCGCTGATCGTCTCCTCGAAGCTCTATTCATCGCTGCTGGTCAACCTCATCAAGGCAATAAGCCTCTTCAAGTTTTCGTCAAAGAGAATGCTTCTATGCAACAGCATTTTAAAGACCTTCGATCCCTCGGAAAGGAGCTTGAAGAAGCTGGAGTTCTTAGTGAAACGGCACGGTCACGGAAGGATTTTTGGGGATTGCATATGCCGCTGGTTTGTCCAGATGGTGCCGTTGTTGCCTATGCTTGGAAACGACAACTCGCCGGTCAAGCTGGAGCTTCTGCCAAAAGACGTTTTTTCCCCCATCTTGATGATGGAGTTGAAGCTAATGAATCAGATTCAAAGAAGCGTTGTGGGTCTGAAGAAGTCACATTTGAACCTAAGGAAGTAATGAGTTTTCTAAGGACGCTACCAGATGTTCTGCAGTCCTTGGAAAAGGAAGTGCCAAATGTGAAAATTTCAACTTTTGAAAGGCTGGACTGGTTAAAATGTGCTTCCACACTCACCTCTTCACCAAATGAGAGTTCTGAGGAACATAACTATCGTGGTTCTAGTAAGCGAAAGTTAGGATCAATGGGAATGGTTGCTCCAGAGAAGGTTGCAGTCATAGAATTGCTGTGCCCTTCTATCTTCAGAGTTGTTATATCCTTGCATCCTGCTGGTTCCATTGATCCCGATGCTGTCGCTTTCTTTTCTCCAGACGAGAGTGGAAGCTATGTGCATGCAAGGGGGGTTTCAGTTCATCATGTGTATAGACATATTACGGAATATGCAACGATAGCTCTGCAGTATTTTCTTGGTAACCAAGCTGAAACATCACTGTATTCTCTTGTGCACTGGATTTGCAGCTACCAGACTTTATTTTCAAGACCATGCAGCAAATGTAAAAAGCTACTTGCCATAGATAAGCAATCAAATTTATTGTTAGCCCCAGTCCACCGGCCTTATTGGAAGTTTTCCTTTTCAAAAATCCTGTCAACCATATCTTCAAAGGACCAGAATTCAGATACTACTATGGCTTATCATATTGGCTGCATCTCCGAGGAAGTATGA

Protein sequence

>Msa1080750

MQQTQQATAATFSTPTPPPSSTAEAPPKQVALAMDKLGQAERIIADIRIGADRLLEALFIAAGQPHQGNKPLQVFVKENASMQQHFKDLRSLGKELEEAGVLSETARSRKDFWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAKRRFFPHLDDGVEANESDSKKRCGSEEVTFEPKEVMSFLRTLPDVLQSLEKEVPNVKISTFERLDWLKCASTLTSSPNESSEEHNYRGSSKRKLGSMGMVAPEKVAVIELLCPSIFRVVISLHPAGSIDPDAVAFFSPDESGSYVHARGVSVHHVYRHITEYATIALQYFLGNQAETSLYSLVHWICSYQTLFSRPCSKCKKLLAIDKQSNLLLAPVHRPYWKFSFSKILSTISSKDQNSDTTMAYHIGCISEEV*