AlfalfaGEDB | Msa1370670

M. sativa cultivar zhongmu-4 / Msa1370670

KEGG: K15170
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013
PFAM: PF11571.11

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1370670	XP_013450209.1	96.359	412	1	1	1	398	1	412	0.0	819

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1370670	sp\|Q8RWM3\|MED27_ARATH	54.177	395	151	6	21	398	21	402	2.45e-145	421

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1370670	A0A072U3D2	96.359	412	1	1	1	398	1	412	0.0	819

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa1370670	0.816947	4.252726e-52	-8.615850e-47
Msa0003470	Msa1370670	-0.824157	9.395058e-54	-8.615850e-47
Msa0023830	Msa1370670	0.807124	5.890841e-50	-8.615850e-47
Msa0086020	Msa1370670	0.804691	1.913014e-49	-8.615850e-47
Msa0145950	Msa1370670	-0.848203	7.119569e-60	-8.615850e-47
Msa0146470	Msa1370670	-0.811618	6.398539e-51	-8.615850e-47
Msa0185390	Msa1370670	-0.805302	1.425304e-49	-8.615850e-47
Msa0212750	Msa1370670	0.801831	7.479598e-49	-8.615850e-47
Msa0223100	Msa1370670	-0.833819	4.284468e-56	-8.615850e-47
Msa0223290	Msa1370670	-0.826607	2.472707e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1370670	MtrunA17_Chr7g0267431	96.359	412	1	1	1	398	1	412	0.0	819

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1370670	AT3G09180.3	54.177	395	151	6	21	398	21	402	2.49e-146	421
Msa1370670	AT3G09180.1	54.177	395	151	6	21	398	21	402	2.49e-146	421
Msa1370670	AT3G09180.2	57.396	338	124	5	21	341	21	355	3.02e-133	386

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Find 128 sgRNAs with CRISPR-Local

Find 372 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTCCAATAAGGCCGG+TGG	0.654863	tig0019132:+182947	None:intergenic
AAAGTTAGGATCAATGGGAA+TGG	0.607147	tig0019132:-184517	Msa1370670:CDS
AAATATAAACATACCTCGTC+TGG	0.394897	tig0019132:+184381	None:intergenic
AACATCACTGTATTCTCTTG+TGG	0.595886	tig0019132:-183264	Msa1370670:intron
AACGCATACCGAGGGATCGA+AGG	0.518466	tig0019132:+186623	None:intergenic
AACTGCAAATCGAACCTGCA+TGG	0.565160	tig0019132:+183091	None:intergenic
AAGCGAAAGTTAGGATCAAT+GGG	0.477448	tig0019132:-184522	Msa1370670:CDS
AAGCTATGTGCATGCAAGGG+GGG	0.635832	tig0019132:-183462	Msa1370670:CDS
AATACAGTGATGTTTCAGCT+TGG	0.576810	tig0019132:+183273	None:intergenic
AATGGAACCAGCAGGATGCA+AGG	0.589922	tig0019132:+184431	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTCCTATCTAACTACAGAA+GGG	+	tig0019132:182436-182455	None:intergenic	30.0%
TCCAAAGAAAAAAGAACCAA+TGG	-	tig0019132:182460-182479	Msa1370670:intron	30.0%
TGTTGTAGATTGTTAATGCA+AGG	-	tig0019132:182707-182726	Msa1370670:intron	30.0%
GTTGTAGATTGTTAATGCAA+GGG	-	tig0019132:182708-182727	Msa1370670:intron	30.0%
GAGTTGGGAATAAATGATTA+AGG	+	tig0019132:183138-183157	None:intergenic	30.0%
CAAAGAAAATCGAAGAAGAA+AGG	-	tig0019132:183224-183243	Msa1370670:intron	30.0%
TTGTCCCTTAACTTAATTTC+AGG	+	tig0019132:183498-183517	None:intergenic	30.0%
GCTCCTTAATAGAATTTCTT+TGG	+	tig0019132:183535-183554	None:intergenic	30.0%
TATTTCAGATTTGATTCAGG+TGG	-	tig0019132:183660-183679	Msa1370670:intron	30.0%
TATATACTCTTGGGATTTGT+CGG	-	tig0019132:183704-183723	Msa1370670:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0019132	gene	181612	187033	181612	ID=Msa1370670;Name=Msa1370670
tig0019132	mRNA	181612	187033	181612	ID=Msa1370670-mRNA-1;Parent=Msa1370670;Name=Msa1370670-mRNA-1;_AED=0.09;_eAED=0.09;_QI=125\|0.85\|0.75\|1\|1\|0.87\|8\|550\|398
tig0019132	exon	181612	182141	181612	ID=Msa1370670-mRNA-1:exon:1783;Parent=Msa1370670-mRNA-1
tig0019132	exon	182832	183026	182832	ID=Msa1370670-mRNA-1:exon:1782;Parent=Msa1370670-mRNA-1
tig0019132	exon	183106	183149	183106	ID=Msa1370670-mRNA-1:exon:1781;Parent=Msa1370670-mRNA-1
tig0019132	exon	183265	183333	183265	ID=Msa1370670-mRNA-1:exon:1780;Parent=Msa1370670-mRNA-1
tig0019132	exon	183430	183489	183430	ID=Msa1370670-mRNA-1:exon:1779;Parent=Msa1370670-mRNA-1
tig0019132	exon	184395	184814	184395	ID=Msa1370670-mRNA-1:exon:1778;Parent=Msa1370670-mRNA-1
tig0019132	exon	186377	186528	186377	ID=Msa1370670-mRNA-1:exon:1777;Parent=Msa1370670-mRNA-1
tig0019132	exon	186632	187033	186632	ID=Msa1370670-mRNA-1:exon:1776;Parent=Msa1370670-mRNA-1
tig0019132	five_prime_UTR	186909	187033	186909	ID=Msa1370670-mRNA-1:five_prime_utr;Parent=Msa1370670-mRNA-1
tig0019132	CDS	186632	186908	186632	ID=Msa1370670-mRNA-1:cds;Parent=Msa1370670-mRNA-1
tig0019132	CDS	186377	186528	186377	ID=Msa1370670-mRNA-1:cds;Parent=Msa1370670-mRNA-1
tig0019132	CDS	184395	184814	184395	ID=Msa1370670-mRNA-1:cds;Parent=Msa1370670-mRNA-1
tig0019132	CDS	183430	183489	183430	ID=Msa1370670-mRNA-1:cds;Parent=Msa1370670-mRNA-1
tig0019132	CDS	183265	183333	183265	ID=Msa1370670-mRNA-1:cds;Parent=Msa1370670-mRNA-1
tig0019132	CDS	183106	183149	183106	ID=Msa1370670-mRNA-1:cds;Parent=Msa1370670-mRNA-1
tig0019132	CDS	182852	183026	182852	ID=Msa1370670-mRNA-1:cds;Parent=Msa1370670-mRNA-1
tig0019132	three_prime_UTR	182832	182851	182832	ID=Msa1370670-mRNA-1:three_prime_utr;Parent=Msa1370670-mRNA-1
tig0019132	three_prime_UTR	181612	182141	181612	ID=Msa1370670-mRNA-1:three_prime_utr;Parent=Msa1370670-mRNA-1

Gene Sequence

>Msa1370670

ATGCAACAAACTCAGCAAGCCACGGCGGCAACTTTCTCAACCCCCACTCCTCCTCCCTCCTCCACCGCGGAAGCACCTCCGAAGCAGGTTGCTCTAGCTATGGACAAACTCGGTCAAGCCGAACGTATCATCGCCGACATCCGAATTGGCGCTGATCGTCTCCTCGAAGCTCTATTCATCGCTGCTGGTCAACCTCATCAAGGCAATAAGCCTCTTCAAGTTTTCGTCAAAGAGAATGCTTCTATGCAACAGCATTTTAAAGACCTTCGATCCCTCGGAAAGGAGCTTGAAGAAGCTGGAGTTCTTAGTGAAACGGCACGGTCACGGAAGGATTTTTGGGGATTGCATATGCCGCTGGTTTGTCCAGATGGTGCCGTTGTTGCCTATGCTTGGAAACGACAACTCGCCGGTCAAGCTGGAGCTTCTGCCAAAAGACGTTTTTTCCCCCATCTTGATGATGGAGTTGAAGCTAATGAATCAGATTCAAAGAAGCGTTGTGGGTCTGAAGAAGTCACATTTGAACCTAAGGAAGTAATGAGTTTTCTAAGGACGCTACCAGATGTTCTGCAGTCCTTGGAAAAGGAAGTGCCAAATGTGAAAATTTCAACTTTTGAAAGGCTGGACTGGTTAAAATGTGCTTCCACACTCACCTCTTCACCAAATGAGAGTTCTGAGGAACATAACTATCGTGGTTCTAGTAAGCGAAAGTTAGGATCAATGGGAATGGTTGCTCCAGAGAAGGTTGCAGTCATAGAATTGCTGTGCCCTTCTATCTTCAGAGTTGTTATATCCTTGCATCCTGCTGGTTCCATTGATCCCGATGCTGTCGCTTTCTTTTCTCCAGACGAGAGTGGAAGCTATGTGCATGCAAGGGGGGTTTCAGTTCATCATGTGTATAGACATATTACGGAATATGCAACGATAGCTCTGCAGTATTTTCTTGGTAACCAAGCTGAAACATCACTGTATTCTCTTGTGCACTGGATTTGCAGCTACCAGACTTTATTTTCAAGACCATGCAGCAAATGTAAAAAGCTACTTGCCATAGATAAGCAATCAAATTTATTGTTAGCCCCAGTCCACCGGCCTTATTGGAAGTTTTCCTTTTCAAAAATCCTGTCAACCATATCTTCAAAGGACCAGAATTCAGATACTACTATGGCTTATCATATTGGCTGCATCTCCGAGGAAGTATGA

Protein sequence

>Msa1370670

MQQTQQATAATFSTPTPPPSSTAEAPPKQVALAMDKLGQAERIIADIRIGADRLLEALFIAAGQPHQGNKPLQVFVKENASMQQHFKDLRSLGKELEEAGVLSETARSRKDFWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAKRRFFPHLDDGVEANESDSKKRCGSEEVTFEPKEVMSFLRTLPDVLQSLEKEVPNVKISTFERLDWLKCASTLTSSPNESSEEHNYRGSSKRKLGSMGMVAPEKVAVIELLCPSIFRVVISLHPAGSIDPDAVAFFSPDESGSYVHARGVSVHHVYRHITEYATIALQYFLGNQAETSLYSLVHWICSYQTLFSRPCSKCKKLLAIDKQSNLLLAPVHRPYWKFSFSKILSTISSKDQNSDTTMAYHIGCISEEV*