AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1370670

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1370670 MtrunA17_Chr7g0267431 96.359 412 1 1 1 398 1 412 0.0 819
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1370670 AT3G09180.3 54.177 395 151 6 21 398 21 402 2.49e-146 421
Msa1370670 AT3G09180.1 54.177 395 151 6 21 398 21 402 2.49e-146 421
Msa1370670 AT3G09180.2 57.396 338 124 5 21 341 21 355 3.02e-133 386

Find 128 sgRNAs with CRISPR-Local

Find 372 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCCAGTCCACCGGCCTTAT+TGG 0.155742 tig0019132:-182954 Msa1370670:CDS
CAAAATGTTCCTATCTCTTA+TGG 0.214790 tig0019132:+181966 None:intergenic
GATCACACTGACGATTATTT+AGG 0.244154 tig0019132:-182831 Msa1370670:intron
TAAATTTGATTGCTTATCTA+TGG 0.251871 tig0019132:+182984 None:intergenic
GAAAAGGAAAACTTCCAATA+AGG 0.292755 tig0019132:+182940 None:intergenic
TGGAGGAGGGAGGAGGAGTG+GGG 0.303544 tig0019132:+186845 None:intergenic
TCCAATAAGGCCGGTGGACT+GGG 0.326295 tig0019132:+182953 None:intergenic
CTGCATCTATTCTCTTAAAA+TGG 0.328141 tig0019132:-182079 Msa1370670:three_prime_UTR
ATTCTGGTCCTTTGAAGATA+TGG 0.337719 tig0019132:+182903 None:intergenic
TTCCATCCAGCATGCATAAA+AGG 0.338607 tig0019132:+181942 None:intergenic
CCATAGTAGTATCTGAATTC+TGG 0.351814 tig0019132:+182887 None:intergenic
TTCCAATAAGGCCGGTGGAC+TGG 0.358151 tig0019132:+182952 None:intergenic
AGAAAACTCATTACTTCCTT+AGG 0.361665 tig0019132:+184699 None:intergenic
ACTACTATGGCTTATCATAT+TGG 0.365286 tig0019132:-182874 Msa1370670:CDS
TCTATGACTGCAACCTTCTC+TGG 0.369638 tig0019132:+184489 None:intergenic
GGTGGAGGAGGGAGGAGGAG+TGG 0.378647 tig0019132:+186843 None:intergenic
ATAACAACTCTGAAGATAGA+AGG 0.378820 tig0019132:+184456 None:intergenic
GAAAAGAAAGCGACAGCATC+GGG 0.384329 tig0019132:+184405 None:intergenic
TGTTCCTCAGAACTCTCATT+TGG 0.390911 tig0019132:+184564 None:intergenic
AAATATAAACATACCTCGTC+TGG 0.394897 tig0019132:+184381 None:intergenic
AGGTGCTTCCGCGGTGGAGG+AGG 0.394926 tig0019132:+186831 None:intergenic
TCCAAGGACTGCAGAACATC+TGG 0.396727 tig0019132:+184666 None:intergenic
GGAGGAGGGAGGAGGAGTGG+GGG 0.401426 tig0019132:+186846 None:intergenic
TAAGCGAAAGTTAGGATCAA+TGG 0.410392 tig0019132:-184523 Msa1370670:CDS
GTGGAGGAGGGAGGAGGAGT+GGG 0.415547 tig0019132:+186844 None:intergenic
CCAGAATTCAGATACTACTA+TGG 0.418672 tig0019132:-182887 Msa1370670:CDS
GTTATATCCTTGCATCCTGC+TGG 0.428885 tig0019132:-184438 Msa1370670:CDS
ACCAGATGTTCTGCAGTCCT+TGG 0.443020 tig0019132:-184667 Msa1370670:CDS
GGTTCTAGTAAGCGAAAGTT+AGG 0.445637 tig0019132:-184531 Msa1370670:CDS
ATCATCGCCGACATCCGAAT+TGG 0.448405 tig0019132:-186760 Msa1370670:CDS
GGCAGAAGCTCCAGCTTGAC+CGG 0.450352 tig0019132:+186377 None:intergenic
GGAAAGGAGCTTGAAGAAGC+TGG 0.454964 tig0019132:-186507 Msa1370670:CDS
CTCAGTCCTAGATTCTCAAT+TGG 0.457021 tig0019132:+181754 None:intergenic
TCATGTGTATAGACATATTA+CGG 0.457686 tig0019132:-183429 Msa1370670:intron
GGATGGTAGCAAAGAGATAG+TGG 0.460231 tig0019132:+186930 None:intergenic
TAGGCAACAACGGCACCATC+TGG 0.461071 tig0019132:+186420 None:intergenic
AGCGACAGCATCGGGATCAA+TGG 0.463919 tig0019132:+184413 None:intergenic
AGGACAAAACCATAAGAGAT+AGG 0.464772 tig0019132:-181975 Msa1370670:three_prime_UTR
CGACAACTCGCCGGTCAAGC+TGG 0.467324 tig0019132:-186387 Msa1370670:CDS
ATAGCTAGAGCAACCTGCTT+CGG 0.468530 tig0019132:+186808 None:intergenic
TCCGCGGTGGAGGAGGGAGG+AGG 0.470294 tig0019132:+186838 None:intergenic
AAGCGAAAGTTAGGATCAAT+GGG 0.477448 tig0019132:-184522 Msa1370670:CDS
CAGATTCAAAGAAGCGTTGT+GGG 0.479474 tig0019132:-184743 Msa1370670:CDS
GTGCCGTTGTTGCCTATGCT+TGG 0.482427 tig0019132:-186413 Msa1370670:CDS
CTTCAACTCCATCATCAAGA+TGG 0.482949 tig0019132:+184775 None:intergenic
CGGAGGTGCTTCCGCGGTGG+AGG 0.483398 tig0019132:+186828 None:intergenic
ATGCCGCTGGTTTGTCCAGA+TGG 0.486924 tig0019132:-186435 Msa1370670:CDS
CCTTTGAAGATATGGTTGAC+AGG 0.493358 tig0019132:+182911 None:intergenic
TATAATAGAAAATAGTTCAA+GGG 0.497621 tig0019132:-181779 Msa1370670:three_prime_UTR
GGTGCTTCCGCGGTGGAGGA+GGG 0.499035 tig0019132:+186832 None:intergenic
GGCAGGCAATGATCAATGTC+AGG 0.499471 tig0019132:+182000 None:intergenic
ATGGTCTTGAAAATAAAGTC+TGG 0.505478 tig0019132:+183110 None:intergenic
TTGGGGATTGCATATGCCGC+TGG 0.506878 tig0019132:-186448 Msa1370670:CDS
TTTAAAGACCTTCGATCCCT+CGG 0.507856 tig0019132:-186631 Msa1370670:intron
TGTTCTGCAGTCCTTGGAAA+AGG 0.508609 tig0019132:-184661 Msa1370670:CDS
AGCTGGAGTTCTTAGTGAAA+CGG 0.510669 tig0019132:-186490 Msa1370670:CDS
TTCAACTCCATCATCAAGAT+GGG 0.512069 tig0019132:+184776 None:intergenic
AGAAGTCACATTTGAACCTA+AGG 0.514604 tig0019132:-184715 Msa1370670:CDS
GTATAATAGAAAATAGTTCA+AGG 0.516031 tig0019132:-181780 Msa1370670:three_prime_UTR
GGAGACGATCAGCGCCAATT+CGG 0.516484 tig0019132:+186746 None:intergenic
AACGCATACCGAGGGATCGA+AGG 0.518466 tig0019132:+186623 None:intergenic
TTCTATTATACATACATGGA+TGG 0.520111 tig0019132:+181792 None:intergenic
TATTGTTAGCCCCAGTCCAC+CGG 0.522334 tig0019132:-182963 Msa1370670:CDS
CAGAGAAGATAGAGATGTGT+AGG 0.523018 tig0019132:+181830 None:intergenic
ATCAGAATACATACATTCAA+AGG 0.532225 tig0019132:+181661 None:intergenic
GATGTCGGCGATGATACGTT+CGG 0.535062 tig0019132:+186768 None:intergenic
GAAGCAGGTTGCTCTAGCTA+TGG 0.535644 tig0019132:-186806 Msa1370670:CDS
CATTGATCATTGCCTGCCAC+AGG 0.545320 tig0019132:-181995 Msa1370670:three_prime_UTR
CAGCGATGAATAGAGCTTCG+AGG 0.547357 tig0019132:+186725 None:intergenic
AGAACTCTCATTTGGTGAAG+AGG 0.550108 tig0019132:+184572 None:intergenic
CTGCTTCGGAGGTGCTTCCG+CGG 0.550284 tig0019132:+186822 None:intergenic
GTGGAAGCTATGTGCATGCA+AGG 0.550710 tig0019132:-183466 Msa1370670:CDS
GAAGCTCTATTCATCGCTGC+TGG 0.552451 tig0019132:-186721 Msa1370670:CDS
CCTGTCAACCATATCTTCAA+AGG 0.552874 tig0019132:-182911 Msa1370670:CDS
TCTTTGACGAAAACTTGAAG+AGG 0.553058 tig0019132:+186676 None:intergenic
AGAAAAGAAAGCGACAGCAT+CGG 0.557015 tig0019132:+184404 None:intergenic
GCTTCCGCGGTGGAGGAGGG+AGG 0.559888 tig0019132:+186835 None:intergenic
TTAGTGAAACGGCACGGTCA+CGG 0.562114 tig0019132:-186479 Msa1370670:CDS
AACTGCAAATCGAACCTGCA+TGG 0.565160 tig0019132:+183091 None:intergenic
TGAAACGGCACGGTCACGGA+AGG 0.567867 tig0019132:-186475 Msa1370670:CDS
AATACAGTGATGTTTCAGCT+TGG 0.576810 tig0019132:+183273 None:intergenic
AGAGATAGTGGGATCCTCCT+CGG 0.576930 tig0019132:+186942 None:intergenic
GGTTGAGAAAGTTGCCGCCG+TGG 0.577460 tig0019132:+186867 None:intergenic
AGGAAAACTTCCAATAAGGC+CGG 0.581505 tig0019132:+182944 None:intergenic
ATCAGCGCCAATTCGGATGT+CGG 0.583731 tig0019132:+186753 None:intergenic
TCGGGATCAATGGAACCAGC+AGG 0.583768 tig0019132:+184423 None:intergenic
TGGAAGCTATGTGCATGCAA+GGG 0.588510 tig0019132:-183465 Msa1370670:CDS
TTAAAATGGCGCATATCACA+TGG 0.589772 tig0019132:-182065 Msa1370670:three_prime_UTR
AATGGAACCAGCAGGATGCA+AGG 0.589922 tig0019132:+184431 None:intergenic
GGGAATGGTTGCTCCAGAGA+AGG 0.594303 tig0019132:-184502 Msa1370670:CDS
AACATCACTGTATTCTCTTG+TGG 0.595886 tig0019132:-183264 Msa1370670:intron
GCTAGAGCAACCTGCTTCGG+AGG 0.598630 tig0019132:+186811 None:intergenic
CTTCGGAGGTGCTTCCGCGG+TGG 0.602149 tig0019132:+186825 None:intergenic
GCTGCTGGTCAACCTCATCA+AGG 0.602170 tig0019132:-186706 Msa1370670:CDS
ATAATAGAAAATAGTTCAAG+GGG 0.603340 tig0019132:-181778 Msa1370670:three_prime_UTR
TAACAACTCTGAAGATAGAA+GGG 0.606373 tig0019132:+184457 None:intergenic
AAAGTTAGGATCAATGGGAA+TGG 0.607147 tig0019132:-184517 Msa1370670:CDS
GGAAGCTATGTGCATGCAAG+GGG 0.609425 tig0019132:-183464 Msa1370670:CDS
TCAGATTCAAAGAAGCGTTG+TGG 0.612312 tig0019132:-184744 Msa1370670:CDS
GCTTGGAAACGACAACTCGC+CGG 0.615503 tig0019132:-186396 Msa1370670:CDS
TGTATGTATTCTGATTCTGA+TGG 0.620676 tig0019132:-181653 Msa1370670:three_prime_UTR
TCAGTGTGATCATACTTCCT+CGG 0.622502 tig0019132:+182843 None:intergenic
CCAATAAGGCCGGTGGACTG+GGG 0.622914 tig0019132:+182954 None:intergenic
GATGGTAGCAAAGAGATAGT+GGG 0.630872 tig0019132:+186931 None:intergenic
AGAGGCTTATTGCCTTGATG+AGG 0.633931 tig0019132:+186694 None:intergenic
AAGCTATGTGCATGCAAGGG+GGG 0.635832 tig0019132:-183462 Msa1370670:CDS
GCAACAAACTCAGCAAGCCA+CGG 0.636504 tig0019132:-186884 Msa1370670:CDS
GAGTTGTCGTTTCCAAGCAT+AGG 0.637421 tig0019132:+186401 None:intergenic
TCAACTCCATCATCAAGATG+GGG 0.643677 tig0019132:+184777 None:intergenic
TCCTCCTCCCTCCTCCACCG+CGG 0.648019 tig0019132:-186839 Msa1370670:CDS
CAATTGAGAATCTAGGACTG+AGG 0.651584 tig0019132:-181753 Msa1370670:three_prime_UTR
AAAACTTCCAATAAGGCCGG+TGG 0.654863 tig0019132:+182947 None:intergenic
TTCACCAAATGAGAGTTCTG+AGG 0.659511 tig0019132:-184568 Msa1370670:CDS
CAACTCCATCATCAAGATGG+GGG 0.661154 tig0019132:+184778 None:intergenic
ATTTGGTGAAGAGGTGAGTG+TGG 0.667142 tig0019132:+184581 None:intergenic
TCTGAGGAACATAACTATCG+TGG 0.670954 tig0019132:-184552 Msa1370670:CDS
GGTGGATGCAAATGTTGCTG+TGG 0.681304 tig0019132:-181706 Msa1370670:three_prime_UTR
ATGTATTCTGATTCTGATGG+AGG 0.681461 tig0019132:-181650 Msa1370670:three_prime_UTR
GCTCTAGCTATGGACAAACT+CGG 0.684631 tig0019132:-186796 Msa1370670:CDS
TTTCCAAGCATAGGCAACAA+CGG 0.687340 tig0019132:+186410 None:intergenic
GCACCATCTGGACAAACCAG+CGG 0.691637 tig0019132:+186432 None:intergenic
GAGTTCTTAGTGAAACGGCA+CGG 0.692244 tig0019132:-186485 Msa1370670:CDS
TCAGGAAATGAATTAGCACA+TGG 0.695752 tig0019132:-182123 Msa1370670:intron
TCATATTGGCTGCATCTCCG+AGG 0.702445 tig0019132:-182860 Msa1370670:CDS
GAAGCTATGTGCATGCAAGG+GGG 0.706512 tig0019132:-183463 Msa1370670:CDS
GCAGGCAATGATCAATGTCA+GGG 0.706843 tig0019132:+182001 None:intergenic
ACAAACTCAGCAAGCCACGG+CGG 0.712432 tig0019132:-186881 Msa1370670:CDS
TAATAGAAAATAGTTCAAGG+GGG 0.757693 tig0019132:-181777 Msa1370670:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAAATATGAAAGAAAT+TGG - tig0019132:182881-182900 Msa1370670:CDS 10.0%
!!! AATTTGTTCTTAATTTAAAA+AGG - tig0019132:183402-183421 Msa1370670:intron 10.0%
!! GAATTAAGTAATATTAAATT+AGG - tig0019132:183633-183652 Msa1370670:intron 10.0%
!!! ATTAATTAATTTTAATCTTC+AGG - tig0019132:186482-186501 Msa1370670:CDS 10.0%
!!! GAAAATATTATTTTTCCTTT+AGG - tig0019132:182502-182521 Msa1370670:intron 15.0%
!! AAAAAATGTATAAATCAATC+CGG + tig0019132:182860-182879 None:intergenic 15.0%
!! TATAACATAAAGGATTAAAT+CGG + tig0019132:182971-182990 None:intergenic 15.0%
!! TCTTAATTTAAAAAGGATAA+TGG - tig0019132:183409-183428 Msa1370670:intron 15.0%
!!! GTTTACATTTTATAACATAA+AGG - tig0019132:183433-183452 Msa1370670:CDS 15.0%
!! AATCAGAAAAAAGATAATAT+AGG - tig0019132:183460-183479 Msa1370670:CDS 15.0%
!! TTTCCTAATATTCATTATAT+GGG - tig0019132:184278-184297 Msa1370670:intron 15.0%
!!! TATTTTCTATTATACATACA+TGG + tig0019132:186838-186857 None:intergenic 15.0%
!! TATAATAGAAAATAGTTCAA+GGG - tig0019132:186844-186863 Msa1370670:CDS 15.0%
!!! TGATTTTTTTCGATTTTGAT+AGG - tig0019132:182095-182114 Msa1370670:three_prime_UTR 20.0%
!! CTAAAAATGATTAATTCCAT+TGG + tig0019132:182479-182498 None:intergenic 20.0%
!! ATAACATAAAGGATTAAATC+GGG + tig0019132:182970-182989 None:intergenic 20.0%
!!! GTTGACATTTTATAACATAA+AGG + tig0019132:182981-183000 None:intergenic 20.0%
!! TTGTATGATGAAGATAATAT+GGG + tig0019132:183053-183072 None:intergenic 20.0%
!! ATTGTATGATGAAGATAATA+TGG + tig0019132:183054-183073 None:intergenic 20.0%
!!! GGGATTTTTTCAATTAAATT+TGG + tig0019132:183086-183105 None:intergenic 20.0%
!! TATTACCTGAAATTAAGTTA+AGG - tig0019132:183490-183509 Msa1370670:intron 20.0%
!! ATTACCTGAAATTAAGTTAA+GGG - tig0019132:183491-183510 Msa1370670:intron 20.0%
!! AGTAGATAATATATACTCTT+GGG - tig0019132:183695-183714 Msa1370670:intron 20.0%
!!! AAAGTTGAAATTTTCACATT+TGG + tig0019132:183993-184012 None:intergenic 20.0%
!!! TGAAAATTTCAACTTTTGAA+AGG - tig0019132:183997-184016 Msa1370670:intron 20.0%
!! CTTTCCTAATATTCATTATA+TGG - tig0019132:184277-184296 Msa1370670:intron 20.0%
!! TTCCTAATATTCATTATATG+GGG - tig0019132:184279-184298 Msa1370670:intron 20.0%
!! TCGTATTATAAATAATGACT+CGG - tig0019132:184324-184343 Msa1370670:intron 20.0%
!! TTCAAAATAACTAAAGTCTA+TGG + tig0019132:184693-184712 None:intergenic 20.0%
!!! ACTTTAGTTATTTTGAATCA+TGG - tig0019132:184696-184715 Msa1370670:CDS 20.0%
!!! AAGATGAAATTTTAGTTGTA+TGG + tig0019132:184848-184867 None:intergenic 20.0%
!! AAAATAAGTCATAAACAACA+AGG + tig0019132:185025-185044 None:intergenic 20.0%
!!! TCATATAGAAATTTTTGATC+TGG + tig0019132:185559-185578 None:intergenic 20.0%
!!! GTTACTAATCTCAATTTTTT+TGG - tig0019132:185588-185607 Msa1370670:intron 20.0%
!! TAAATTTGATTGCTTATCTA+TGG + tig0019132:185642-185661 None:intergenic 20.0%
!! TTGAATAATAAGGGTAAATA+TGG - tig0019132:186134-186153 Msa1370670:intron 20.0%
!! GTATAATAGAAAATAGTTCA+AGG - tig0019132:186843-186862 Msa1370670:CDS 20.0%
!! ATAATAGAAAATAGTTCAAG+GGG - tig0019132:186845-186864 Msa1370670:CDS 20.0%
!! ATGTAAAAAGTTAAAAGATG+TGG - tig0019132:186896-186915 Msa1370670:exon 20.0%
!!! TAGTATTTTTTCGTACAACT+CGG + tig0019132:181660-181679 None:intergenic 25.0%
!!! TTTTTCGATTTTGATAGGAA+AGG - tig0019132:182100-182119 Msa1370670:three_prime_UTR 25.0%
! GATTAAGGTTATGTAGAAAA+TGG + tig0019132:183123-183142 None:intergenic 25.0%
!!! TGTTTTTTTGCTTTTGGTTA+TGG + tig0019132:183175-183194 None:intergenic 25.0%
!!! TATGGTTGTTTTTTTGCTTT+TGG + tig0019132:183181-183200 None:intergenic 25.0%
!!! TTCGATTTTCTTTGTTTCTA+CGG + tig0019132:183218-183237 None:intergenic 25.0%
! AAAGAAAATCGAAGAAGAAA+GGG - tig0019132:183225-183244 Msa1370670:intron 25.0%
! TTGCCAAAGAAATTCTATTA+AGG - tig0019132:183529-183548 Msa1370670:intron 25.0%
!! TCTTATTTCAGATTTGATTC+AGG - tig0019132:183657-183676 Msa1370670:intron 25.0%
! CAGTAGATAATATATACTCT+TGG - tig0019132:183694-183713 Msa1370670:intron 25.0%
! TAAAATAAGGATTGCAATGT+TGG - tig0019132:184458-184477 Msa1370670:CDS 25.0%
!! ACTAGATCAAAAATTTTCAG+AGG + tig0019132:184633-184652 None:intergenic 25.0%
!! TGTTAATTTTCACTGTTCTT+TGG - tig0019132:184872-184891 Msa1370670:intron 25.0%
! TCATGTGTATAGACATATTA+CGG - tig0019132:185194-185213 Msa1370670:intron 25.0%
! TAGACATCAGTGATAATTTA+AGG + tig0019132:185984-186003 None:intergenic 25.0%
! TAAATTATCACTGATGTCTA+CGG - tig0019132:185984-186003 Msa1370670:intron 25.0%
!!! AGCTTTTGCTTTGAATAATA+AGG - tig0019132:186124-186143 Msa1370670:intron 25.0%
!!! GCTTTTGCTTTGAATAATAA+GGG - tig0019132:186125-186144 Msa1370670:intron 25.0%
!! CTTTAAAAATTACAATCAGC+TGG + tig0019132:186710-186729 None:intergenic 25.0%
!! CAGCTGATTGTAATTTTTAA+AGG - tig0019132:186708-186727 Msa1370670:CDS 25.0%
! TTCTATTATACATACATGGA+TGG + tig0019132:186834-186853 None:intergenic 25.0%
! TAATAGAAAATAGTTCAAGG+GGG - tig0019132:186846-186865 Msa1370670:CDS 25.0%
! TAAAAAGTTAAAAGATGTGG+TGG - tig0019132:186899-186918 Msa1370670:exon 25.0%
! ATCAGAATACATACATTCAA+AGG + tig0019132:186965-186984 None:intergenic 25.0%
!!! TTGATTTTGATTTCGCGATT+AGG - tig0019132:182044-182063 Msa1370670:three_prime_UTR 30.0%
!!! TGATTTTGATTTCGCGATTA+GGG - tig0019132:182045-182064 Msa1370670:three_prime_UTR 30.0%
ATTCCTATCTAACTACAGAA+GGG + tig0019132:182436-182455 None:intergenic 30.0%
TCCAAAGAAAAAAGAACCAA+TGG - tig0019132:182460-182479 Msa1370670:intron 30.0%
!!! TCCATTGGTTCTTTTTTCTT+TGG + tig0019132:182464-182483 None:intergenic 30.0%
! ATTGTATTTCTACACAACTC+AGG + tig0019132:182665-182684 None:intergenic 30.0%
TGTTGTAGATTGTTAATGCA+AGG - tig0019132:182707-182726 Msa1370670:intron 30.0%
GTTGTAGATTGTTAATGCAA+GGG - tig0019132:182708-182727 Msa1370670:intron 30.0%
! TATGTAGAAAATGGACTCAT+GGG + tig0019132:183114-183133 None:intergenic 30.0%
! TTATGTAGAAAATGGACTCA+TGG + tig0019132:183115-183134 None:intergenic 30.0%
GAGTTGGGAATAAATGATTA+AGG + tig0019132:183138-183157 None:intergenic 30.0%
! GTTGATTTCATTGATGAGTT+GGG + tig0019132:183153-183172 None:intergenic 30.0%
CAAAGAAAATCGAAGAAGAA+AGG - tig0019132:183224-183243 Msa1370670:intron 30.0%
! TGAAGATCCTTTTATGTTGT+TGG - tig0019132:183258-183277 Msa1370670:intron 30.0%
!! GAGTTTTGTGATGATTTTTC+TGG - tig0019132:183359-183378 Msa1370670:intron 30.0%
TTGTCCCTTAACTTAATTTC+AGG + tig0019132:183498-183517 None:intergenic 30.0%
GCTCCTTAATAGAATTTCTT+TGG + tig0019132:183535-183554 None:intergenic 30.0%
TATTTCAGATTTGATTCAGG+TGG - tig0019132:183660-183679 Msa1370670:intron 30.0%
TATATACTCTTGGGATTTGT+CGG - tig0019132:183704-183723 Msa1370670:intron 30.0%
! TTAGGCTTTTGAATGATTTC+AGG - tig0019132:183781-183800 Msa1370670:intron 30.0%
AGAAAACTCATTACTTCCTT+AGG + tig0019132:183927-183946 None:intergenic 30.0%
! AGGAAGTAATGAGTTTTCTA+AGG - tig0019132:183928-183947 Msa1370670:intron 30.0%
!! AATTTCAACTTTTGAAAGGC+TGG - tig0019132:184001-184020 Msa1370670:intron 30.0%
! TAACAACTCTGAAGATAGAA+GGG + tig0019132:184169-184188 None:intergenic 30.0%
! ATAACAACTCTGAAGATAGA+AGG + tig0019132:184170-184189 None:intergenic 30.0%
AAATATAAACATACCTCGTC+TGG + tig0019132:184245-184264 None:intergenic 30.0%
AGGTATGTTTATATTTACCG+TGG - tig0019132:184249-184268 Msa1370670:intron 30.0%
ATATTAGGAAAGACAAACCA+CGG + tig0019132:184269-184288 None:intergenic 30.0%
CACCCCATATAATGAATATT+AGG + tig0019132:184284-184303 None:intergenic 30.0%
TATCCAGAACCAGTAAAATA+AGG - tig0019132:184445-184464 Msa1370670:CDS 30.0%
!!! AATCCTTATTTTACTGGTTC+TGG + tig0019132:184451-184470 None:intergenic 30.0%
!!! CATTGCAATCCTTATTTTAC+TGG + tig0019132:184457-184476 None:intergenic 30.0%
GGATAATGAAAAGATGCAAT+AGG - tig0019132:184479-184498 Msa1370670:CDS 30.0%
! ATTTTTAACCACGATGTTAC+AGG + tig0019132:184729-184748 None:intergenic 30.0%
AAAAGATATCCTGCAAAACA+AGG + tig0019132:185000-185019 None:intergenic 30.0%
GTATAGACATATTACGGTAA+TGG - tig0019132:185200-185219 Msa1370670:intron 30.0%
TGATGACTTCTAACCAAAAT+AGG + tig0019132:185419-185438 None:intergenic 30.0%
! ATGGTCTTGAAAATAAAGTC+TGG + tig0019132:185516-185535 None:intergenic 30.0%
GAAAAGGAAAACTTCCAATA+AGG + tig0019132:185686-185705 None:intergenic 30.0%
ACTACTATGGCTTATCATAT+TGG - tig0019132:185749-185768 Msa1370670:intron 30.0%
TTGACAAAAAAAGCTCTGTT+TGG + tig0019132:186283-186302 None:intergenic 30.0%
!!! AGAGCTAAAAGCTCTTTTTT+TGG - tig0019132:186326-186345 Msa1370670:intron 30.0%
!!! GAGCTAAAAGCTCTTTTTTT+GGG - tig0019132:186327-186346 Msa1370670:intron 30.0%
CTGCATCTATTCTCTTAAAA+TGG - tig0019132:186544-186563 Msa1370670:intron 30.0%
! GGATTGAAAGATTGAGTTTT+TGG - tig0019132:186579-186598 Msa1370670:intron 30.0%
CAAAATGTTCCTATCTCTTA+TGG + tig0019132:186660-186679 None:intergenic 30.0%
TGTATGTATTCTGATTCTGA+TGG - tig0019132:186970-186989 Msa1370670:five_prime_UTR 30.0%
! TTTTTCGTACAACTCGGATT+GGG + tig0019132:181654-181673 None:intergenic 35.0%
!!! TTTTTTCGTACAACTCGGAT+TGG + tig0019132:181655-181674 None:intergenic 35.0%
GTACGAAAAAATACTAACCG+AGG - tig0019132:181664-181683 Msa1370670:three_prime_UTR 35.0%
! TGTTGCATTTGCACTGTTTT+TGG + tig0019132:181725-181744 None:intergenic 35.0%
TCTTTGACGAAAACTTGAAG+AGG + tig0019132:181950-181969 None:intergenic 35.0%
!! GGTTTGTTTCCACTCTATTT+TGG - tig0019132:182282-182301 Msa1370670:intron 35.0%
TTAAGTGTTTGTGTCGTGTT+AGG + tig0019132:182334-182353 None:intergenic 35.0%
CACGACACAAACACTTAAAA+CGG - tig0019132:182336-182355 Msa1370670:intron 35.0%
TTGAATGTAATCACATGCGT+CGG - tig0019132:182386-182405 Msa1370670:intron 35.0%
TTTCCCTTCTGTAGTTAGAT+AGG - tig0019132:182430-182449 Msa1370670:intron 35.0%
GATTCCTATCTAACTACAGA+AGG + tig0019132:182437-182456 None:intergenic 35.0%
ATGCGCATATATCTTCCTAA+AGG + tig0019132:182520-182539 None:intergenic 35.0%
TCGAATTGTTGTATTACCTC+CGG - tig0019132:182563-182582 Msa1370670:intron 35.0%
AGTTATCTGACAGCATAACT+TGG + tig0019132:182630-182649 None:intergenic 35.0%
ACATGAATAACAATGCCACT+TGG - tig0019132:182750-182769 Msa1370670:intron 35.0%
! CATGAATAACAATGCCACTT+GGG - tig0019132:182751-182770 Msa1370670:intron 35.0%
! ATGAATAACAATGCCACTTG+GGG - tig0019132:182752-182771 Msa1370670:intron 35.0%
CATCATATTCATGCTCTAGT+CGG - tig0019132:182790-182809 Msa1370670:intron 35.0%
AAGTGCTTCCTTGAAAAGAT+CGG + tig0019132:182836-182855 None:intergenic 35.0%
! AAATGGACTCATGGGTTTAA+GGG + tig0019132:183106-183125 None:intergenic 35.0%
! AAAATGGACTCATGGGTTTA+AGG + tig0019132:183107-183126 None:intergenic 35.0%
! GGTTGATTTCATTGATGAGT+TGG + tig0019132:183154-183173 None:intergenic 35.0%
!! TTTCTTTGTTTCTACGGAGT+TGG + tig0019132:183212-183231 None:intergenic 35.0%
TAGCACTCCAACAACATAAA+AGG + tig0019132:183268-183287 None:intergenic 35.0%
!! TTTTATGTTGTTGGAGTGCT+AGG - tig0019132:183267-183286 Msa1370670:CDS 35.0%
! ATTCTATTAAGGAGCACGAA+TGG - tig0019132:183540-183559 Msa1370670:intron 35.0%
TTGGAAAGAAAAAGCGAGAA+AGG - tig0019132:183594-183613 Msa1370670:intron 35.0%
TGGAAAGAAAAAGCGAGAAA+GGG - tig0019132:183595-183614 Msa1370670:intron 35.0%
TTCAACTCCATCATCAAGAT+GGG + tig0019132:183850-183869 None:intergenic 35.0%
AGAAGTCACATTTGAACCTA+AGG - tig0019132:183908-183927 Msa1370670:intron 35.0%
TAAGCGAAAGTTAGGATCAA+TGG - tig0019132:184100-184119 Msa1370670:intron 35.0%
AAGCGAAAGTTAGGATCAAT+GGG - tig0019132:184101-184120 Msa1370670:intron 35.0%
AAAGTTAGGATCAATGGGAA+TGG - tig0019132:184106-184125 Msa1370670:intron 35.0%
!!! TTTTGGGATGCTTATGTATC+AGG - tig0019132:184353-184372 Msa1370670:intron 35.0%
ATCCACACTACTATCAACTA+CGG + tig0019132:184777-184796 None:intergenic 35.0%
!! TAGTTGATAGTAGTGTGGAT+TGG - tig0019132:184777-184796 Msa1370670:CDS 35.0%
!! GTTCTTTGGTTCTCTACTAA+TGG - tig0019132:184886-184905 Msa1370670:intron 35.0%
TGTGTACTTCTTTAACAGAG+TGG - tig0019132:185138-185157 Msa1370670:intron 35.0%
!!! AGTTTTTTATCCTACACTGC+AGG - tig0019132:185290-185309 Msa1370670:intron 35.0%
!! ATAGCTCTGCAGTATTTTCT+TGG - tig0019132:185324-185343 Msa1370670:intron 35.0%
AATACAGTGATGTTTCAGCT+TGG + tig0019132:185353-185372 None:intergenic 35.0%
AACATCACTGTATTCTCTTG+TGG - tig0019132:185359-185378 Msa1370670:intron 35.0%
! GCATATCGTGATACCTATTT+TGG - tig0019132:185403-185422 Msa1370670:intron 35.0%
!!! CTTTATTTTCAAGACCATGC+AGG - tig0019132:185518-185537 Msa1370670:intron 35.0%
!! GGTTGACAGGATTTTTGAAA+AGG + tig0019132:185702-185721 None:intergenic 35.0%
! ATTCTGGTCCTTTGAAGATA+TGG + tig0019132:185723-185742 None:intergenic 35.0%
CCATAGTAGTATCTGAATTC+TGG + tig0019132:185739-185758 None:intergenic 35.0%
CCAGAATTCAGATACTACTA+TGG - tig0019132:185736-185755 Msa1370670:intron 35.0%
GATCACACTGACGATTATTT+AGG - tig0019132:185792-185811 Msa1370670:intron 35.0%
TAGAAGTTCCACAGCAATTA+TGG + tig0019132:185829-185848 None:intergenic 35.0%
ATAATTGCTGTGGAACTTCT+AGG - tig0019132:185828-185847 Msa1370670:intron 35.0%
ATCAACGTTCTCCATTTCAT+TGG - tig0019132:185851-185870 Msa1370670:intron 35.0%
! CATGAGTATTGCCAATGAAA+TGG + tig0019132:185865-185884 None:intergenic 35.0%
GTAATCACATGTACTAGTGT+CGG + tig0019132:185943-185962 None:intergenic 35.0%
! GATAAGCTAGTTGAAGTGTT+TGG - tig0019132:186087-186106 Msa1370670:intron 35.0%
ACGAGCTTATAGCTTATTTC+AGG + tig0019132:186235-186254 None:intergenic 35.0%
AATCACTACACCAGTGATAA+AGG + tig0019132:186422-186441 None:intergenic 35.0%
TCAGGAAATGAATTAGCACA+TGG - tig0019132:186500-186519 Msa1370670:CDS 35.0%
TTAAAATGGCGCATATCACA+TGG - tig0019132:186558-186577 Msa1370670:intron 35.0%
!! AAGATTGAGTTTTTGGATGC+TGG - tig0019132:186586-186605 Msa1370670:intron 35.0%
!! AGATTGAGTTTTTGGATGCT+GGG - tig0019132:186587-186606 Msa1370670:intron 35.0%
AGGACAAAACCATAAGAGAT+AGG - tig0019132:186648-186667 Msa1370670:CDS 35.0%
! TTTTGACCTTTTATGCATGC+TGG - tig0019132:186675-186694 Msa1370670:CDS 35.0%
!!! GGTATTGAAAGTTGCTTTTG+TGG - tig0019132:186938-186957 Msa1370670:five_prime_UTR 35.0%
ATGTATTCTGATTCTGATGG+AGG - tig0019132:186973-186992 Msa1370670:five_prime_UTR 35.0%
GGGCCTTTACCGTTAAAAAA+AGG - tig0019132:181628-181647 Msa1370670:three_prime_UTR 40.0%
!!! GGGCCTTTTTTTAACGGTAA+AGG + tig0019132:181634-181653 None:intergenic 40.0%
!!! CGGATTGGGCCTTTTTTTAA+CGG + tig0019132:181640-181659 None:intergenic 40.0%
CGAAAAAATACTAACCGAGG+AGG - tig0019132:181667-181686 Msa1370670:three_prime_UTR 40.0%
GATGGTAGCAAAGAGATAGT+GGG + tig0019132:181695-181714 None:intergenic 40.0%
!!! TTTGCACTGTTTTTGGTGCT+GGG + tig0019132:181718-181737 None:intergenic 40.0%
!!! ATTTGCACTGTTTTTGGTGC+TGG + tig0019132:181719-181738 None:intergenic 40.0%
TTTAAAGACCTTCGATCCCT+CGG - tig0019132:181992-182011 Msa1370670:three_prime_UTR 40.0%
AAACTGAAAACGCATACCGA+GGG + tig0019132:182011-182030 None:intergenic 40.0%
! TGATTTCGCGATTAGGGTTT+TGG - tig0019132:182051-182070 Msa1370670:three_prime_UTR 40.0%
!! GATTAGGGTTTTGGTATCGT+CGG - tig0019132:182060-182079 Msa1370670:three_prime_UTR 40.0%
AGCTGGAGTTCTTAGTGAAA+CGG - tig0019132:182133-182152 Msa1370670:intron 40.0%
TTTCCAAGCATAGGCAACAA+CGG + tig0019132:182216-182235 None:intergenic 40.0%
AACAAACCTAGTCCTGTCAA+CGG + tig0019132:182270-182289 None:intergenic 40.0%
!!! TTCCACTCTATTTTGGTTCG+TGG - tig0019132:182289-182308 Msa1370670:intron 40.0%
GATATATGCGCATAGTTGAG+AGG - tig0019132:182527-182546 Msa1370670:intron 40.0%
!! CTACTGCTTGCTATGAATTC+CGG + tig0019132:182585-182604 None:intergenic 40.0%
GATTGTTAATGCAAGGGTCA+AGG - tig0019132:182714-182733 Msa1370670:intron 40.0%
!! AATGTGTGCCGATCTTTTCA+AGG - tig0019132:182825-182844 Msa1370670:intron 40.0%
!!! CTTTTCAAGGAAGCACTTAC+CGG - tig0019132:182838-182857 Msa1370670:exon 40.0%
ACGGAGTTGGAATTTGGTTA+TGG + tig0019132:183199-183218 None:intergenic 40.0%
GTTTCTACGGAGTTGGAATT+TGG + tig0019132:183205-183224 None:intergenic 40.0%
CCATGCATAGGCTTATTTGT+TGG + tig0019132:183566-183585 None:intergenic 40.0%
CCAACAAATAAGCCTATGCA+TGG - tig0019132:183563-183582 Msa1370670:intron 40.0%
CCAAAACTTCAACCATGCAT+AGG + tig0019132:183578-183597 None:intergenic 40.0%
! CCTATGCATGGTTGAAGTTT+TGG - tig0019132:183575-183594 Msa1370670:intron 40.0%
GTGAGCAGCTAATGTAACAT+GGG + tig0019132:183761-183780 None:intergenic 40.0%
AGTGAGCAGCTAATGTAACA+TGG + tig0019132:183762-183781 None:intergenic 40.0%
GTTACATTAGCTGCTCACTT+AGG - tig0019132:183763-183782 Msa1370670:intron 40.0%
! TTTTTCCCCCATCTTGATGA+TGG - tig0019132:183840-183859 Msa1370670:intron 40.0%
TCAACTCCATCATCAAGATG+GGG + tig0019132:183849-183868 None:intergenic 40.0%
CTTCAACTCCATCATCAAGA+TGG + tig0019132:183851-183870 None:intergenic 40.0%
!! TCAGATTCAAAGAAGCGTTG+TGG - tig0019132:183879-183898 Msa1370670:intron 40.0%
!! CAGATTCAAAGAAGCGTTGT+GGG - tig0019132:183880-183899 Msa1370670:intron 40.0%
! ATTTGGCACTTCCTTTTCCA+AGG + tig0019132:183976-183995 None:intergenic 40.0%
! AGAACTCTCATTTGGTGAAG+AGG + tig0019132:184054-184073 None:intergenic 40.0%
TTCACCAAATGAGAGTTCTG+AGG - tig0019132:184055-184074 Msa1370670:intron 40.0%
TGTTCCTCAGAACTCTCATT+TGG + tig0019132:184062-184081 None:intergenic 40.0%
TCTGAGGAACATAACTATCG+TGG - tig0019132:184071-184090 Msa1370670:intron 40.0%
! GGTTCTAGTAAGCGAAAGTT+AGG - tig0019132:184092-184111 Msa1370670:intron 40.0%
AGAAAAGAAAGCGACAGCAT+CGG + tig0019132:184222-184241 None:intergenic 40.0%
!! TAATGACTCGGCGTTAGTTT+TGG - tig0019132:184336-184355 Msa1370670:intron 40.0%
!!! AATGACTCGGCGTTAGTTTT+GGG - tig0019132:184337-184356 Msa1370670:intron 40.0%
CATTGAGAGAGAAAGCTACA+GGG + tig0019132:184578-184597 None:intergenic 40.0%
TCATTGAGAGAGAAAGCTAC+AGG + tig0019132:184579-184598 None:intergenic 40.0%
TTCTCTCTCAATGACCATCT+TGG - tig0019132:184585-184604 Msa1370670:CDS 40.0%
!!! TTATTTTGAATCATGGCGCC+AGG - tig0019132:184703-184722 Msa1370670:CDS 40.0%
ATGGCAGCTGAATTAGAGAT+GGG + tig0019132:184829-184848 None:intergenic 40.0%
TATGGCAGCTGAATTAGAGA+TGG + tig0019132:184830-184849 None:intergenic 40.0%
TCTACTAATGGCCGTTTGAA+GGG - tig0019132:184898-184917 Msa1370670:intron 40.0%
AGATGTCAACTCCCTTCAAA+CGG + tig0019132:184912-184931 None:intergenic 40.0%
!!! TTGCTTTGTCCTTGTTTTGC+AGG - tig0019132:184988-185007 Msa1370670:intron 40.0%
CACTTCAAACAGTCACTCAA+AGG + tig0019132:185257-185276 None:intergenic 40.0%
CATCATTCTTGACATACTCG+AGG - tig0019132:185434-185453 Msa1370670:intron 40.0%
AGGAAAACTTCCAATAAGGC+CGG + tig0019132:185682-185701 None:intergenic 40.0%
! CCTTTGAAGATATGGTTGAC+AGG + tig0019132:185715-185734 None:intergenic 40.0%
CCTGTCAACCATATCTTCAA+AGG - tig0019132:185712-185731 Msa1370670:intron 40.0%
TCAGTGTGATCATACTTCCT+CGG + tig0019132:185783-185802 None:intergenic 40.0%
GTTAAGTGCCATAATTGCTG+TGG - tig0019132:185818-185837 Msa1370670:intron 40.0%
ACAACTTCAACCTGAAGTGT+CGG + tig0019132:185893-185912 None:intergenic 40.0%
GGTAACACAAAAGCTCTGTT+TGG + tig0019132:186262-186281 None:intergenic 40.0%
ACTAACATGTAGGCTCTGTT+TGG + tig0019132:186357-186376 None:intergenic 40.0%
!!! TCTCTTATGGTTTTGTCCTG+TGG + tig0019132:186647-186666 None:intergenic 40.0%
TTCCATCCAGCATGCATAAA+AGG + tig0019132:186684-186703 None:intergenic 40.0%
CAGAGAAGATAGAGATGTGT+AGG + tig0019132:186796-186815 None:intergenic 40.0%
CTCAGTCCTAGATTCTCAAT+TGG + tig0019132:186872-186891 None:intergenic 40.0%
! CAATTGAGAATCTAGGACTG+AGG - tig0019132:186870-186889 Msa1370670:CDS 40.0%
GGATGGTAGCAAAGAGATAG+TGG + tig0019132:181696-181715 None:intergenic 45.0%
!!! TTGCACTGTTTTTGGTGCTG+GGG + tig0019132:181717-181736 None:intergenic 45.0%
ATAGCTAGAGCAACCTGCTT+CGG + tig0019132:181818-181837 None:intergenic 45.0%
GCTCTAGCTATGGACAAACT+CGG - tig0019132:181827-181846 Msa1370670:three_prime_UTR 45.0%
AGAGGCTTATTGCCTTGATG+AGG + tig0019132:181932-181951 None:intergenic 45.0%
GAAACTGAAAACGCATACCG+AGG + tig0019132:182012-182031 None:intergenic 45.0%
GAGTTCTTAGTGAAACGGCA+CGG - tig0019132:182138-182157 Msa1370670:intron 45.0%
! ACGGTCACGGAAGGATTTTT+GGG - tig0019132:182157-182176 Msa1370670:intron 45.0%
! GAGTTGTCGTTTCCAAGCAT+AGG + tig0019132:182225-182244 None:intergenic 45.0%
GACCACGAACCAAAATAGAG+TGG + tig0019132:182294-182313 None:intergenic 45.0%
CAACTCCATCATCAAGATGG+GGG + tig0019132:183848-183867 None:intergenic 45.0%
TGTTCTGCAGTCCTTGGAAA+AGG - tig0019132:183962-183981 Msa1370670:intron 45.0%
!! CAACTTTTGAAAGGCTGGAC+TGG - tig0019132:184006-184025 Msa1370670:intron 45.0%
! ATTTGGTGAAGAGGTGAGTG+TGG + tig0019132:184045-184064 None:intergenic 45.0%
TCTATGACTGCAACCTTCTC+TGG + tig0019132:184137-184156 None:intergenic 45.0%
GTTATATCCTTGCATCCTGC+TGG - tig0019132:184185-184204 Msa1370670:intron 45.0%
GAAAAGAAAGCGACAGCATC+GGG + tig0019132:184221-184240 None:intergenic 45.0%
GGGGTGTGAACTATTTGTTC+TGG - tig0019132:184298-184317 Msa1370670:intron 45.0%
GGTTGGGAAACAGTTAGACT+TGG + tig0019132:184529-184548 None:intergenic 45.0%
AGTTATGCAGAGTGGAGGTT+GGG + tig0019132:184545-184564 None:intergenic 45.0%
GTTGCAACTTTCTGCCAAGA+TGG + tig0019132:184602-184621 None:intergenic 45.0%
TCTCTTCTTTCTCCTCCCAT+TGG - tig0019132:184661-184680 Msa1370670:CDS 45.0%
CTCTTCTTTCTCCTCCCATT+GGG - tig0019132:184662-184681 Msa1370670:CDS 45.0%
CAACTACGGCTTCAAAAGAG+AGG + tig0019132:184763-184782 None:intergenic 45.0%
!! AGCCGTAGTTGATAGTAGTG+TGG - tig0019132:184772-184791 Msa1370670:CDS 45.0%
CTCTACTAATGGCCGTTTGA+AGG - tig0019132:184897-184916 Msa1370670:intron 45.0%
TTTGCAGAGACTAGACAGAG+TGG - tig0019132:184936-184955 Msa1370670:intron 45.0%
TGGAAGCTATGTGCATGCAA+GGG - tig0019132:185158-185177 Msa1370670:intron 45.0%
ACAGTCACTCAAAGGATCAC+AGG + tig0019132:185249-185268 None:intergenic 45.0%
GTTGCATATTCCTGCAGTGT+AGG + tig0019132:185303-185322 None:intergenic 45.0%
! TTTCCTTTTCCCTGTAGCAC+TGG - tig0019132:185479-185498 Msa1370670:intron 45.0%
AATCCAGTGCTACAGGGAAA+AGG + tig0019132:185485-185504 None:intergenic 45.0%
AACTGCAAATCGAACCTGCA+TGG + tig0019132:185535-185554 None:intergenic 45.0%
AAAACTTCCAATAAGGCCGG+TGG + tig0019132:185679-185698 None:intergenic 45.0%
ACAGACACATGTCAGCAACT+TGG + tig0019132:185918-185937 None:intergenic 45.0%
AAGACCTGGCACTAACATGT+AGG + tig0019132:186367-186386 None:intergenic 45.0%
ATGAAGCAGCGAAAAAGACC+TGG + tig0019132:186381-186400 None:intergenic 45.0%
ACCAGTGATAAAGGAGGAAG+GGG + tig0019132:186413-186432 None:intergenic 45.0%
CACCAGTGATAAAGGAGGAA+GGG + tig0019132:186414-186433 None:intergenic 45.0%
ACACCAGTGATAAAGGAGGA+AGG + tig0019132:186415-186434 None:intergenic 45.0%
CACTACACCAGTGATAAAGG+AGG + tig0019132:186419-186438 None:intergenic 45.0%
GCAGGCAATGATCAATGTCA+GGG + tig0019132:186625-186644 None:intergenic 45.0%
!!! TTATGGTTTTGTCCTGTGGC+AGG + tig0019132:186643-186662 None:intergenic 45.0%
! GACCTTTTATGCATGCTGGA+TGG - tig0019132:186679-186698 Msa1370670:CDS 45.0%
!! AGAGATAGTGGGATCCTCCT+CGG + tig0019132:181684-181703 None:intergenic 50.0%
!!! ACTGTTTTTGGTGCTGGGGA+TGG + tig0019132:181713-181732 None:intergenic 50.0%
GCAACAAACTCAGCAAGCCA+CGG - tig0019132:181739-181758 Msa1370670:three_prime_UTR 50.0%
GAAGCAGGTTGCTCTAGCTA+TGG - tig0019132:181817-181836 Msa1370670:three_prime_UTR 50.0%
GATGTCGGCGATGATACGTT+CGG + tig0019132:181858-181877 None:intergenic 50.0%
ATCATCGCCGACATCCGAAT+TGG - tig0019132:181863-181882 Msa1370670:three_prime_UTR 50.0%
ATCAGCGCCAATTCGGATGT+CGG + tig0019132:181873-181892 None:intergenic 50.0%
CAGCGATGAATAGAGCTTCG+AGG + tig0019132:181901-181920 None:intergenic 50.0%
GAAGCTCTATTCATCGCTGC+TGG - tig0019132:181902-181921 Msa1370670:three_prime_UTR 50.0%
GGAAAGGAGCTTGAAGAAGC+TGG - tig0019132:182116-182135 Msa1370670:three_prime_UTR 50.0%
TTAGTGAAACGGCACGGTCA+CGG - tig0019132:182144-182163 Msa1370670:intron 50.0%
! CACGGTCACGGAAGGATTTT+TGG - tig0019132:182156-182175 Msa1370670:intron 50.0%
! CGGTCACGGAAGGATTTTTG+GGG - tig0019132:182158-182177 Msa1370670:intron 50.0%
TGTCGTGTTAGGAGTCTGCT+AGG + tig0019132:182323-182342 None:intergenic 50.0%
!! CTGCTTGCTATGAATTCCGG+AGG + tig0019132:182582-182601 None:intergenic 50.0%
ACACAACTCAGGCACGTATG+AGG + tig0019132:182654-182673 None:intergenic 50.0%
TCGGCACACATTCATGTGAC+TGG + tig0019132:182817-182836 None:intergenic 50.0%
ACCAGATGTTCTGCAGTCCT+TGG - tig0019132:183956-183975 Msa1370670:intron 50.0%
TCCAAGGACTGCAGAACATC+TGG + tig0019132:183960-183979 None:intergenic 50.0%
AATGGAACCAGCAGGATGCA+AGG + tig0019132:184195-184214 None:intergenic 50.0%
! CGCTTTCTTTTCTCCAGACG+AGG - tig0019132:184229-184248 Msa1370670:intron 50.0%
CAGTTATGCAGAGTGGAGGT+TGG + tig0019132:184546-184565 None:intergenic 50.0%
ATGGCAGTTATGCAGAGTGG+AGG + tig0019132:184550-184569 None:intergenic 50.0%
TGCATGGCAGTTATGCAGAG+TGG + tig0019132:184553-184572 None:intergenic 50.0%
TTCTTTCTCCTCCCATTGGG+AGG - tig0019132:184665-184684 Msa1370670:CDS 50.0%
AGTCTATGGCTCCTCCCAAT+GGG + tig0019132:184679-184698 None:intergenic 50.0%
AAGTCTATGGCTCCTCCCAA+TGG + tig0019132:184680-184699 None:intergenic 50.0%
TAACCACGATGTTACAGGCC+TGG + tig0019132:184724-184743 None:intergenic 50.0%
GTGGAAGCTATGTGCATGCA+AGG - tig0019132:185157-185176 Msa1370670:intron 50.0%
GGAAGCTATGTGCATGCAAG+GGG - tig0019132:185159-185178 Msa1370670:intron 50.0%
GAAGCTATGTGCATGCAAGG+GGG - tig0019132:185160-185179 Msa1370670:intron 50.0%
AAGCTATGTGCATGCAAGGG+GGG - tig0019132:185161-185180 Msa1370670:intron 50.0%
GCTGCAAATCCAGTGCTACA+GGG + tig0019132:185491-185510 None:intergenic 50.0%
AGCTGCAAATCCAGTGCTAC+AGG + tig0019132:185492-185511 None:intergenic 50.0%
TATTGTTAGCCCCAGTCCAC+CGG - tig0019132:185660-185679 Msa1370670:intron 50.0%
! TCATATTGGCTGCATCTCCG+AGG - tig0019132:185763-185782 Msa1370670:intron 50.0%
!! TCATGTAGCACCGACACTTC+AGG - tig0019132:185880-185899 Msa1370670:intron 50.0%
CTGATGTCTACGGCTCTGTT+TGG - tig0019132:185994-186013 Msa1370670:intron 50.0%
AGAGCCTACATGTTAGTGCC+AGG - tig0019132:186360-186379 Msa1370670:intron 50.0%
CCAGTGATAAAGGAGGAAGG+GGG + tig0019132:186412-186431 None:intergenic 50.0%
GGCAGGCAATGATCAATGTC+AGG + tig0019132:186626-186645 None:intergenic 50.0%
CATTGATCATTGCCTGCCAC+AGG - tig0019132:186628-186647 Msa1370670:intron 50.0%
AGGGGGCCAATTGAGAATCT+AGG - tig0019132:186863-186882 Msa1370670:CDS 50.0%
GGTGGATGCAAATGTTGCTG+TGG - tig0019132:186917-186936 Msa1370670:five_prime_UTR 50.0%
ACAAACTCAGCAAGCCACGG+CGG - tig0019132:181742-181761 Msa1370670:three_prime_UTR 55.0%
GGAGACGATCAGCGCCAATT+CGG + tig0019132:181880-181899 None:intergenic 55.0%
GCTGCTGGTCAACCTCATCA+AGG - tig0019132:181917-181936 Msa1370670:three_prime_UTR 55.0%
AACGCATACCGAGGGATCGA+AGG + tig0019132:182003-182022 None:intergenic 55.0%
TTGGGGATTGCATATGCCGC+TGG - tig0019132:182175-182194 Msa1370670:intron 55.0%
!! ATGCCGCTGGTTTGTCCAGA+TGG - tig0019132:182188-182207 Msa1370670:intron 55.0%
GCACCATCTGGACAAACCAG+CGG + tig0019132:182194-182213 None:intergenic 55.0%
TAGGCAACAACGGCACCATC+TGG + tig0019132:182206-182225 None:intergenic 55.0%
! GTGCCGTTGTTGCCTATGCT+TGG - tig0019132:182210-182229 Msa1370670:intron 55.0%
GCTTGGAAACGACAACTCGC+CGG - tig0019132:182227-182246 Msa1370670:intron 55.0%
CTTCTGCCGTTGACAGGACT+AGG - tig0019132:182261-182280 Msa1370670:intron 55.0%
GGGAATGGTTGCTCCAGAGA+AGG - tig0019132:184121-184140 Msa1370670:intron 55.0%
TCGGGATCAATGGAACCAGC+AGG + tig0019132:184203-184222 None:intergenic 55.0%
! AGCGACAGCATCGGGATCAA+TGG + tig0019132:184213-184232 None:intergenic 55.0%
AGAAAGCTACAGGGCGTGCA+TGG + tig0019132:184569-184588 None:intergenic 55.0%
! TCCAATAAGGCCGGTGGACT+GGG + tig0019132:185673-185692 None:intergenic 55.0%
TTCCAATAAGGCCGGTGGAC+TGG + tig0019132:185674-185693 None:intergenic 55.0%
CCCCCTTCCTCCTTTATCAC+TGG - tig0019132:186409-186428 Msa1370670:CDS 55.0%
GGTTGAGAAAGTTGCCGCCG+TGG + tig0019132:181759-181778 None:intergenic 60.0%
GCTAGAGCAACCTGCTTCGG+AGG + tig0019132:181815-181834 None:intergenic 60.0%
TGAAACGGCACGGTCACGGA+AGG - tig0019132:182148-182167 Msa1370670:intron 60.0%
GGCAGAAGCTCCAGCTTGAC+CGG + tig0019132:182249-182268 None:intergenic 60.0%
CTGGAGCTTCTGCCGTTGAC+AGG - tig0019132:182255-182274 Msa1370670:intron 60.0%
TGAGCTCGCATCACCCCAAG+TGG + tig0019132:182768-182787 None:intergenic 60.0%
CTATGGCTCCTCCCAATGGG+AGG + tig0019132:184676-184695 None:intergenic 60.0%
!! CCAATAAGGCCGGTGGACTG+GGG + tig0019132:185672-185691 None:intergenic 60.0%
TGGAGGAGGGAGGAGGAGTG+GGG + tig0019132:181781-181800 None:intergenic 65.0%
GTGGAGGAGGGAGGAGGAGT+GGG + tig0019132:181782-181801 None:intergenic 65.0%
!! CTGCTTCGGAGGTGCTTCCG+CGG + tig0019132:181804-181823 None:intergenic 65.0%
CGACAACTCGCCGGTCAAGC+TGG - tig0019132:182236-182255 Msa1370670:intron 65.0%
GCGCCAGGCCTGTAACATCG+TGG - tig0019132:184718-184737 Msa1370670:CDS 65.0%
! CCCCAGTCCACCGGCCTTAT+TGG - tig0019132:185669-185688 Msa1370670:intron 65.0%
GGAGGAGGGAGGAGGAGTGG+GGG + tig0019132:181780-181799 None:intergenic 70.0%
GGTGGAGGAGGGAGGAGGAG+TGG + tig0019132:181783-181802 None:intergenic 70.0%
TCCTCCTCCCTCCTCCACCG+CGG - tig0019132:181784-181803 Msa1370670:three_prime_UTR 70.0%
GGTGCTTCCGCGGTGGAGGA+GGG + tig0019132:181794-181813 None:intergenic 70.0%
AGGTGCTTCCGCGGTGGAGG+AGG + tig0019132:181795-181814 None:intergenic 70.0%
!! CTTCGGAGGTGCTTCCGCGG+TGG + tig0019132:181801-181820 None:intergenic 70.0%
!! CGCGGAAGCACCTCCGAAGC+AGG - tig0019132:181802-181821 Msa1370670:three_prime_UTR 70.0%
TCCGCGGTGGAGGAGGGAGG+AGG + tig0019132:181788-181807 None:intergenic 75.0%
GCTTCCGCGGTGGAGGAGGG+AGG + tig0019132:181791-181810 None:intergenic 75.0%
!! CGGAGGTGCTTCCGCGGTGG+AGG + tig0019132:181798-181817 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0019132 gene 181612 187033 181612 ID=Msa1370670;Name=Msa1370670
tig0019132 mRNA 181612 187033 181612 ID=Msa1370670-mRNA-1;Parent=Msa1370670;Name=Msa1370670-mRNA-1;_AED=0.09;_eAED=0.09;_QI=125|0.85|0.75|1|1|0.87|8|550|398
tig0019132 exon 181612 182141 181612 ID=Msa1370670-mRNA-1:exon:1783;Parent=Msa1370670-mRNA-1
tig0019132 exon 182832 183026 182832 ID=Msa1370670-mRNA-1:exon:1782;Parent=Msa1370670-mRNA-1
tig0019132 exon 183106 183149 183106 ID=Msa1370670-mRNA-1:exon:1781;Parent=Msa1370670-mRNA-1
tig0019132 exon 183265 183333 183265 ID=Msa1370670-mRNA-1:exon:1780;Parent=Msa1370670-mRNA-1
tig0019132 exon 183430 183489 183430 ID=Msa1370670-mRNA-1:exon:1779;Parent=Msa1370670-mRNA-1
tig0019132 exon 184395 184814 184395 ID=Msa1370670-mRNA-1:exon:1778;Parent=Msa1370670-mRNA-1
tig0019132 exon 186377 186528 186377 ID=Msa1370670-mRNA-1:exon:1777;Parent=Msa1370670-mRNA-1
tig0019132 exon 186632 187033 186632 ID=Msa1370670-mRNA-1:exon:1776;Parent=Msa1370670-mRNA-1
tig0019132 five_prime_UTR 186909 187033 186909 ID=Msa1370670-mRNA-1:five_prime_utr;Parent=Msa1370670-mRNA-1
tig0019132 CDS 186632 186908 186632 ID=Msa1370670-mRNA-1:cds;Parent=Msa1370670-mRNA-1
tig0019132 CDS 186377 186528 186377 ID=Msa1370670-mRNA-1:cds;Parent=Msa1370670-mRNA-1
tig0019132 CDS 184395 184814 184395 ID=Msa1370670-mRNA-1:cds;Parent=Msa1370670-mRNA-1
tig0019132 CDS 183430 183489 183430 ID=Msa1370670-mRNA-1:cds;Parent=Msa1370670-mRNA-1
tig0019132 CDS 183265 183333 183265 ID=Msa1370670-mRNA-1:cds;Parent=Msa1370670-mRNA-1
tig0019132 CDS 183106 183149 183106 ID=Msa1370670-mRNA-1:cds;Parent=Msa1370670-mRNA-1
tig0019132 CDS 182852 183026 182852 ID=Msa1370670-mRNA-1:cds;Parent=Msa1370670-mRNA-1
tig0019132 three_prime_UTR 182832 182851 182832 ID=Msa1370670-mRNA-1:three_prime_utr;Parent=Msa1370670-mRNA-1
tig0019132 three_prime_UTR 181612 182141 181612 ID=Msa1370670-mRNA-1:three_prime_utr;Parent=Msa1370670-mRNA-1
Gene Sequence

>Msa1370670

ATGCAACAAACTCAGCAAGCCACGGCGGCAACTTTCTCAACCCCCACTCCTCCTCCCTCCTCCACCGCGGAAGCACCTCCGAAGCAGGTTGCTCTAGCTATGGACAAACTCGGTCAAGCCGAACGTATCATCGCCGACATCCGAATTGGCGCTGATCGTCTCCTCGAAGCTCTATTCATCGCTGCTGGTCAACCTCATCAAGGCAATAAGCCTCTTCAAGTTTTCGTCAAAGAGAATGCTTCTATGCAACAGCATTTTAAAGACCTTCGATCCCTCGGAAAGGAGCTTGAAGAAGCTGGAGTTCTTAGTGAAACGGCACGGTCACGGAAGGATTTTTGGGGATTGCATATGCCGCTGGTTTGTCCAGATGGTGCCGTTGTTGCCTATGCTTGGAAACGACAACTCGCCGGTCAAGCTGGAGCTTCTGCCAAAAGACGTTTTTTCCCCCATCTTGATGATGGAGTTGAAGCTAATGAATCAGATTCAAAGAAGCGTTGTGGGTCTGAAGAAGTCACATTTGAACCTAAGGAAGTAATGAGTTTTCTAAGGACGCTACCAGATGTTCTGCAGTCCTTGGAAAAGGAAGTGCCAAATGTGAAAATTTCAACTTTTGAAAGGCTGGACTGGTTAAAATGTGCTTCCACACTCACCTCTTCACCAAATGAGAGTTCTGAGGAACATAACTATCGTGGTTCTAGTAAGCGAAAGTTAGGATCAATGGGAATGGTTGCTCCAGAGAAGGTTGCAGTCATAGAATTGCTGTGCCCTTCTATCTTCAGAGTTGTTATATCCTTGCATCCTGCTGGTTCCATTGATCCCGATGCTGTCGCTTTCTTTTCTCCAGACGAGAGTGGAAGCTATGTGCATGCAAGGGGGGTTTCAGTTCATCATGTGTATAGACATATTACGGAATATGCAACGATAGCTCTGCAGTATTTTCTTGGTAACCAAGCTGAAACATCACTGTATTCTCTTGTGCACTGGATTTGCAGCTACCAGACTTTATTTTCAAGACCATGCAGCAAATGTAAAAAGCTACTTGCCATAGATAAGCAATCAAATTTATTGTTAGCCCCAGTCCACCGGCCTTATTGGAAGTTTTCCTTTTCAAAAATCCTGTCAACCATATCTTCAAAGGACCAGAATTCAGATACTACTATGGCTTATCATATTGGCTGCATCTCCGAGGAAGTATGA
Protein sequence

>Msa1370670

MQQTQQATAATFSTPTPPPSSTAEAPPKQVALAMDKLGQAERIIADIRIGADRLLEALFIAAGQPHQGNKPLQVFVKENASMQQHFKDLRSLGKELEEAGVLSETARSRKDFWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAKRRFFPHLDDGVEANESDSKKRCGSEEVTFEPKEVMSFLRTLPDVLQSLEKEVPNVKISTFERLDWLKCASTLTSSPNESSEEHNYRGSSKRKLGSMGMVAPEKVAVIELLCPSIFRVVISLHPAGSIDPDAVAFFSPDESGSYVHARGVSVHHVYRHITEYATIALQYFLGNQAETSLYSLVHWICSYQTLFSRPCSKCKKLLAIDKQSNLLLAPVHRPYWKFSFSKILSTISSKDQNSDTTMAYHIGCISEEV*