AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1126340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1126340 MtrunA17_Chr7g0267431 96.359 412 1 1 1 398 1 412 0.0 819
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1126340 AT3G09180.3 54.177 395 151 6 21 398 21 402 2.49e-146 421
Msa1126340 AT3G09180.1 54.177 395 151 6 21 398 21 402 2.49e-146 421
Msa1126340 AT3G09180.2 57.396 338 124 5 21 341 21 355 3.02e-133 386

Find 128 sgRNAs with CRISPR-Local

Find 372 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCCAGTCCACCGGCCTTAT+TGG 0.155742 7_3:-77885002 Msa1126340:CDS
CAAAATGTTCCTATCTCTTA+TGG 0.214790 7_3:+77884014 None:intergenic
GATCACACTGACGATTATTT+AGG 0.244154 7_3:-77884879 Msa1126340:intron
TAAATTTGATTGCTTATCTA+TGG 0.251871 7_3:+77885032 None:intergenic
GAAAAGGAAAACTTCCAATA+AGG 0.292755 7_3:+77884988 None:intergenic
TGGAGGAGGGAGGAGGAGTG+GGG 0.303544 7_3:+77888894 None:intergenic
TCCAATAAGGCCGGTGGACT+GGG 0.326295 7_3:+77885001 None:intergenic
CTGCATCTATTCTCTTAAAA+TGG 0.328141 7_3:-77884127 Msa1126340:three_prime_UTR
ATTCTGGTCCTTTGAAGATA+TGG 0.337719 7_3:+77884951 None:intergenic
TTCCATCCAGCATGCATAAA+AGG 0.338607 7_3:+77883990 None:intergenic
CCATAGTAGTATCTGAATTC+TGG 0.351814 7_3:+77884935 None:intergenic
TTCCAATAAGGCCGGTGGAC+TGG 0.358151 7_3:+77885000 None:intergenic
AGAAAACTCATTACTTCCTT+AGG 0.361665 7_3:+77886747 None:intergenic
ACTACTATGGCTTATCATAT+TGG 0.365286 7_3:-77884922 Msa1126340:CDS
TCTATGACTGCAACCTTCTC+TGG 0.369638 7_3:+77886537 None:intergenic
GGTGGAGGAGGGAGGAGGAG+TGG 0.378647 7_3:+77888892 None:intergenic
ATAACAACTCTGAAGATAGA+AGG 0.378820 7_3:+77886504 None:intergenic
GAAAAGAAAGCGACAGCATC+GGG 0.384329 7_3:+77886453 None:intergenic
TGTTCCTCAGAACTCTCATT+TGG 0.390911 7_3:+77886612 None:intergenic
AAATATAAACATACCTCGTC+TGG 0.394897 7_3:+77886429 None:intergenic
AGGTGCTTCCGCGGTGGAGG+AGG 0.394926 7_3:+77888880 None:intergenic
TCCAAGGACTGCAGAACATC+TGG 0.396727 7_3:+77886714 None:intergenic
GGAGGAGGGAGGAGGAGTGG+GGG 0.401426 7_3:+77888895 None:intergenic
TAAGCGAAAGTTAGGATCAA+TGG 0.410392 7_3:-77886571 Msa1126340:CDS
GTGGAGGAGGGAGGAGGAGT+GGG 0.415547 7_3:+77888893 None:intergenic
CCAGAATTCAGATACTACTA+TGG 0.418672 7_3:-77884935 Msa1126340:CDS
GTTATATCCTTGCATCCTGC+TGG 0.428885 7_3:-77886486 Msa1126340:CDS
ACCAGATGTTCTGCAGTCCT+TGG 0.443020 7_3:-77886715 Msa1126340:CDS
GGTTCTAGTAAGCGAAAGTT+AGG 0.445637 7_3:-77886579 Msa1126340:CDS
ATCATCGCCGACATCCGAAT+TGG 0.448405 7_3:-77888809 Msa1126340:CDS
GGCAGAAGCTCCAGCTTGAC+CGG 0.450352 7_3:+77888426 None:intergenic
GGAAAGGAGCTTGAAGAAGC+TGG 0.454964 7_3:-77888556 Msa1126340:CDS
CTCAGTCCTAGATTCTCAAT+TGG 0.457021 7_3:+77883802 None:intergenic
TCATGTGTATAGACATATTA+CGG 0.457686 7_3:-77885477 Msa1126340:intron
GGATGGTAGCAAAGAGATAG+TGG 0.460231 7_3:+77888979 None:intergenic
TAGGCAACAACGGCACCATC+TGG 0.461071 7_3:+77888469 None:intergenic
AGCGACAGCATCGGGATCAA+TGG 0.463919 7_3:+77886461 None:intergenic
AGGACAAAACCATAAGAGAT+AGG 0.464772 7_3:-77884023 Msa1126340:three_prime_UTR
CGACAACTCGCCGGTCAAGC+TGG 0.467324 7_3:-77888436 Msa1126340:CDS
ATAGCTAGAGCAACCTGCTT+CGG 0.468530 7_3:+77888857 None:intergenic
TCCGCGGTGGAGGAGGGAGG+AGG 0.470294 7_3:+77888887 None:intergenic
AAGCGAAAGTTAGGATCAAT+GGG 0.477448 7_3:-77886570 Msa1126340:CDS
CAGATTCAAAGAAGCGTTGT+GGG 0.479474 7_3:-77886791 Msa1126340:CDS
GTGCCGTTGTTGCCTATGCT+TGG 0.482427 7_3:-77888462 Msa1126340:CDS
CTTCAACTCCATCATCAAGA+TGG 0.482949 7_3:+77886823 None:intergenic
CGGAGGTGCTTCCGCGGTGG+AGG 0.483398 7_3:+77888877 None:intergenic
ATGCCGCTGGTTTGTCCAGA+TGG 0.486924 7_3:-77888484 Msa1126340:CDS
CCTTTGAAGATATGGTTGAC+AGG 0.493358 7_3:+77884959 None:intergenic
TATAATAGAAAATAGTTCAA+GGG 0.497621 7_3:-77883827 Msa1126340:three_prime_UTR
GGTGCTTCCGCGGTGGAGGA+GGG 0.499035 7_3:+77888881 None:intergenic
GGCAGGCAATGATCAATGTC+AGG 0.499471 7_3:+77884048 None:intergenic
ATGGTCTTGAAAATAAAGTC+TGG 0.505478 7_3:+77885158 None:intergenic
TTGGGGATTGCATATGCCGC+TGG 0.506878 7_3:-77888497 Msa1126340:CDS
TTTAAAGACCTTCGATCCCT+CGG 0.507856 7_3:-77888680 Msa1126340:intron
TGTTCTGCAGTCCTTGGAAA+AGG 0.508609 7_3:-77886709 Msa1126340:CDS
AGCTGGAGTTCTTAGTGAAA+CGG 0.510669 7_3:-77888539 Msa1126340:CDS
TTCAACTCCATCATCAAGAT+GGG 0.512069 7_3:+77886824 None:intergenic
AGAAGTCACATTTGAACCTA+AGG 0.514604 7_3:-77886763 Msa1126340:CDS
GTATAATAGAAAATAGTTCA+AGG 0.516031 7_3:-77883828 Msa1126340:three_prime_UTR
GGAGACGATCAGCGCCAATT+CGG 0.516484 7_3:+77888795 None:intergenic
AACGCATACCGAGGGATCGA+AGG 0.518466 7_3:+77888672 None:intergenic
TTCTATTATACATACATGGA+TGG 0.520111 7_3:+77883840 None:intergenic
TATTGTTAGCCCCAGTCCAC+CGG 0.522334 7_3:-77885011 Msa1126340:CDS
CAGAGAAGATAGAGATGTGT+AGG 0.523018 7_3:+77883878 None:intergenic
ATCAGAATACATACATTCAA+AGG 0.532225 7_3:+77883709 None:intergenic
GATGTCGGCGATGATACGTT+CGG 0.535062 7_3:+77888817 None:intergenic
GAAGCAGGTTGCTCTAGCTA+TGG 0.535644 7_3:-77888855 Msa1126340:CDS
CATTGATCATTGCCTGCCAC+AGG 0.545320 7_3:-77884043 Msa1126340:three_prime_UTR
CAGCGATGAATAGAGCTTCG+AGG 0.547357 7_3:+77888774 None:intergenic
AGAACTCTCATTTGGTGAAG+AGG 0.550108 7_3:+77886620 None:intergenic
CTGCTTCGGAGGTGCTTCCG+CGG 0.550284 7_3:+77888871 None:intergenic
GTGGAAGCTATGTGCATGCA+AGG 0.550710 7_3:-77885514 Msa1126340:CDS
GAAGCTCTATTCATCGCTGC+TGG 0.552451 7_3:-77888770 Msa1126340:CDS
CCTGTCAACCATATCTTCAA+AGG 0.552874 7_3:-77884959 Msa1126340:CDS
TCTTTGACGAAAACTTGAAG+AGG 0.553058 7_3:+77888725 None:intergenic
AGAAAAGAAAGCGACAGCAT+CGG 0.557015 7_3:+77886452 None:intergenic
GCTTCCGCGGTGGAGGAGGG+AGG 0.559888 7_3:+77888884 None:intergenic
TTAGTGAAACGGCACGGTCA+CGG 0.562114 7_3:-77888528 Msa1126340:CDS
AACTGCAAATCGAACCTGCA+TGG 0.565160 7_3:+77885139 None:intergenic
TGAAACGGCACGGTCACGGA+AGG 0.567867 7_3:-77888524 Msa1126340:CDS
AATACAGTGATGTTTCAGCT+TGG 0.576810 7_3:+77885321 None:intergenic
AGAGATAGTGGGATCCTCCT+CGG 0.576930 7_3:+77888991 None:intergenic
GGTTGAGAAAGTTGCCGCCG+TGG 0.577460 7_3:+77888916 None:intergenic
AGGAAAACTTCCAATAAGGC+CGG 0.581505 7_3:+77884992 None:intergenic
ATCAGCGCCAATTCGGATGT+CGG 0.583731 7_3:+77888802 None:intergenic
TCGGGATCAATGGAACCAGC+AGG 0.583768 7_3:+77886471 None:intergenic
TGGAAGCTATGTGCATGCAA+GGG 0.588510 7_3:-77885513 Msa1126340:CDS
TTAAAATGGCGCATATCACA+TGG 0.589772 7_3:-77884113 Msa1126340:three_prime_UTR
AATGGAACCAGCAGGATGCA+AGG 0.589922 7_3:+77886479 None:intergenic
GGGAATGGTTGCTCCAGAGA+AGG 0.594303 7_3:-77886550 Msa1126340:CDS
AACATCACTGTATTCTCTTG+TGG 0.595886 7_3:-77885312 Msa1126340:intron
GCTAGAGCAACCTGCTTCGG+AGG 0.598630 7_3:+77888860 None:intergenic
CTTCGGAGGTGCTTCCGCGG+TGG 0.602149 7_3:+77888874 None:intergenic
GCTGCTGGTCAACCTCATCA+AGG 0.602170 7_3:-77888755 Msa1126340:CDS
ATAATAGAAAATAGTTCAAG+GGG 0.603340 7_3:-77883826 Msa1126340:three_prime_UTR
TAACAACTCTGAAGATAGAA+GGG 0.606373 7_3:+77886505 None:intergenic
AAAGTTAGGATCAATGGGAA+TGG 0.607147 7_3:-77886565 Msa1126340:CDS
GGAAGCTATGTGCATGCAAG+GGG 0.609425 7_3:-77885512 Msa1126340:CDS
TCAGATTCAAAGAAGCGTTG+TGG 0.612312 7_3:-77886792 Msa1126340:CDS
GCTTGGAAACGACAACTCGC+CGG 0.615503 7_3:-77888445 Msa1126340:CDS
TGTATGTATTCTGATTCTGA+TGG 0.620676 7_3:-77883701 Msa1126340:three_prime_UTR
TCAGTGTGATCATACTTCCT+CGG 0.622502 7_3:+77884891 None:intergenic
CCAATAAGGCCGGTGGACTG+GGG 0.622914 7_3:+77885002 None:intergenic
GATGGTAGCAAAGAGATAGT+GGG 0.630872 7_3:+77888980 None:intergenic
AGAGGCTTATTGCCTTGATG+AGG 0.633931 7_3:+77888743 None:intergenic
AAGCTATGTGCATGCAAGGG+GGG 0.635832 7_3:-77885510 Msa1126340:CDS
GCAACAAACTCAGCAAGCCA+CGG 0.636504 7_3:-77888933 Msa1126340:CDS
GAGTTGTCGTTTCCAAGCAT+AGG 0.637421 7_3:+77888450 None:intergenic
TCAACTCCATCATCAAGATG+GGG 0.643677 7_3:+77886825 None:intergenic
TCCTCCTCCCTCCTCCACCG+CGG 0.648019 7_3:-77888888 Msa1126340:CDS
CAATTGAGAATCTAGGACTG+AGG 0.651584 7_3:-77883801 Msa1126340:three_prime_UTR
AAAACTTCCAATAAGGCCGG+TGG 0.654863 7_3:+77884995 None:intergenic
TTCACCAAATGAGAGTTCTG+AGG 0.659511 7_3:-77886616 Msa1126340:CDS
CAACTCCATCATCAAGATGG+GGG 0.661154 7_3:+77886826 None:intergenic
ATTTGGTGAAGAGGTGAGTG+TGG 0.667142 7_3:+77886629 None:intergenic
TCTGAGGAACATAACTATCG+TGG 0.670954 7_3:-77886600 Msa1126340:CDS
GGTGGATGCAAATGTTGCTG+TGG 0.681304 7_3:-77883754 Msa1126340:three_prime_UTR
ATGTATTCTGATTCTGATGG+AGG 0.681461 7_3:-77883698 Msa1126340:three_prime_UTR
GCTCTAGCTATGGACAAACT+CGG 0.684631 7_3:-77888845 Msa1126340:CDS
TTTCCAAGCATAGGCAACAA+CGG 0.687340 7_3:+77888459 None:intergenic
GCACCATCTGGACAAACCAG+CGG 0.691637 7_3:+77888481 None:intergenic
GAGTTCTTAGTGAAACGGCA+CGG 0.692244 7_3:-77888534 Msa1126340:CDS
TCAGGAAATGAATTAGCACA+TGG 0.695752 7_3:-77884171 Msa1126340:intron
TCATATTGGCTGCATCTCCG+AGG 0.702445 7_3:-77884908 Msa1126340:CDS
GAAGCTATGTGCATGCAAGG+GGG 0.706512 7_3:-77885511 Msa1126340:CDS
GCAGGCAATGATCAATGTCA+GGG 0.706843 7_3:+77884049 None:intergenic
ACAAACTCAGCAAGCCACGG+CGG 0.712432 7_3:-77888930 Msa1126340:CDS
TAATAGAAAATAGTTCAAGG+GGG 0.757693 7_3:-77883825 Msa1126340:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAAATATGAAAGAAAT+TGG - chr7_3:77884930-77884949 Msa1126340:CDS 10.0%
!!! AATTTGTTCTTAATTTAAAA+AGG - chr7_3:77885451-77885470 Msa1126340:intron 10.0%
!! GAATTAAGTAATATTAAATT+AGG - chr7_3:77885682-77885701 Msa1126340:intron 10.0%
!!! ATTAATTAATTTTAATCTTC+AGG - chr7_3:77888531-77888550 Msa1126340:CDS 10.0%
!!! GAAAATATTATTTTTCCTTT+AGG - chr7_3:77884550-77884569 Msa1126340:intron 15.0%
!! AAAAAATGTATAAATCAATC+CGG + chr7_3:77884908-77884927 None:intergenic 15.0%
!! TATAACATAAAGGATTAAAT+CGG + chr7_3:77885020-77885039 None:intergenic 15.0%
!! TCTTAATTTAAAAAGGATAA+TGG - chr7_3:77885458-77885477 Msa1126340:intron 15.0%
!!! GTTTACATTTTATAACATAA+AGG - chr7_3:77885482-77885501 Msa1126340:CDS 15.0%
!! AATCAGAAAAAAGATAATAT+AGG - chr7_3:77885509-77885528 Msa1126340:CDS 15.0%
!! TTTCCTAATATTCATTATAT+GGG - chr7_3:77886327-77886346 Msa1126340:intron 15.0%
!!! TATTTTCTATTATACATACA+TGG + chr7_3:77888887-77888906 None:intergenic 15.0%
!! TATAATAGAAAATAGTTCAA+GGG - chr7_3:77888893-77888912 Msa1126340:CDS 15.0%
!!! TGATTTTTTTCGATTTTGAT+AGG - chr7_3:77884143-77884162 Msa1126340:three_prime_UTR 20.0%
!! CTAAAAATGATTAATTCCAT+TGG + chr7_3:77884527-77884546 None:intergenic 20.0%
!! ATAACATAAAGGATTAAATC+GGG + chr7_3:77885019-77885038 None:intergenic 20.0%
!!! GTTGACATTTTATAACATAA+AGG + chr7_3:77885030-77885049 None:intergenic 20.0%
!! TTGTATGATGAAGATAATAT+GGG + chr7_3:77885102-77885121 None:intergenic 20.0%
!! ATTGTATGATGAAGATAATA+TGG + chr7_3:77885103-77885122 None:intergenic 20.0%
!!! GGGATTTTTTCAATTAAATT+TGG + chr7_3:77885135-77885154 None:intergenic 20.0%
!! TATTACCTGAAATTAAGTTA+AGG - chr7_3:77885539-77885558 Msa1126340:intron 20.0%
!! ATTACCTGAAATTAAGTTAA+GGG - chr7_3:77885540-77885559 Msa1126340:intron 20.0%
!! AGTAGATAATATATACTCTT+GGG - chr7_3:77885744-77885763 Msa1126340:intron 20.0%
!!! AAAGTTGAAATTTTCACATT+TGG + chr7_3:77886042-77886061 None:intergenic 20.0%
!!! TGAAAATTTCAACTTTTGAA+AGG - chr7_3:77886046-77886065 Msa1126340:intron 20.0%
!! CTTTCCTAATATTCATTATA+TGG - chr7_3:77886326-77886345 Msa1126340:intron 20.0%
!! TTCCTAATATTCATTATATG+GGG - chr7_3:77886328-77886347 Msa1126340:intron 20.0%
!! TCGTATTATAAATAATGACT+CGG - chr7_3:77886373-77886392 Msa1126340:intron 20.0%
!! TTCAAAATAACTAAAGTCTA+TGG + chr7_3:77886742-77886761 None:intergenic 20.0%
!!! ACTTTAGTTATTTTGAATCA+TGG - chr7_3:77886745-77886764 Msa1126340:CDS 20.0%
!!! AAGATGAAATTTTAGTTGTA+TGG + chr7_3:77886897-77886916 None:intergenic 20.0%
!! AAAATAAGTCATAAACAACA+AGG + chr7_3:77887074-77887093 None:intergenic 20.0%
!!! TCATATAGAAATTTTTGATC+TGG + chr7_3:77887608-77887627 None:intergenic 20.0%
!!! GTTACTAATCTCAATTTTTT+TGG - chr7_3:77887637-77887656 Msa1126340:intron 20.0%
!! TAAATTTGATTGCTTATCTA+TGG + chr7_3:77887691-77887710 None:intergenic 20.0%
!! TTGAATAATAAGGGTAAATA+TGG - chr7_3:77888183-77888202 Msa1126340:intron 20.0%
!! GTATAATAGAAAATAGTTCA+AGG - chr7_3:77888892-77888911 Msa1126340:CDS 20.0%
!! ATAATAGAAAATAGTTCAAG+GGG - chr7_3:77888894-77888913 Msa1126340:CDS 20.0%
!! ATGTAAAAAGTTAAAAGATG+TGG - chr7_3:77888945-77888964 Msa1126340:exon 20.0%
!!! TAGTATTTTTTCGTACAACT+CGG + chr7_3:77883708-77883727 None:intergenic 25.0%
!!! TTTTTCGATTTTGATAGGAA+AGG - chr7_3:77884148-77884167 Msa1126340:three_prime_UTR 25.0%
! GATTAAGGTTATGTAGAAAA+TGG + chr7_3:77885172-77885191 None:intergenic 25.0%
!!! TGTTTTTTTGCTTTTGGTTA+TGG + chr7_3:77885224-77885243 None:intergenic 25.0%
!!! TATGGTTGTTTTTTTGCTTT+TGG + chr7_3:77885230-77885249 None:intergenic 25.0%
!!! TTCGATTTTCTTTGTTTCTA+CGG + chr7_3:77885267-77885286 None:intergenic 25.0%
! AAAGAAAATCGAAGAAGAAA+GGG - chr7_3:77885274-77885293 Msa1126340:intron 25.0%
! TTGCCAAAGAAATTCTATTA+AGG - chr7_3:77885578-77885597 Msa1126340:intron 25.0%
!! TCTTATTTCAGATTTGATTC+AGG - chr7_3:77885706-77885725 Msa1126340:intron 25.0%
! CAGTAGATAATATATACTCT+TGG - chr7_3:77885743-77885762 Msa1126340:intron 25.0%
! TAAAATAAGGATTGCAATGT+TGG - chr7_3:77886507-77886526 Msa1126340:CDS 25.0%
!! ACTAGATCAAAAATTTTCAG+AGG + chr7_3:77886682-77886701 None:intergenic 25.0%
!! TGTTAATTTTCACTGTTCTT+TGG - chr7_3:77886921-77886940 Msa1126340:intron 25.0%
! TCATGTGTATAGACATATTA+CGG - chr7_3:77887243-77887262 Msa1126340:intron 25.0%
! TAGACATCAGTGATAATTTA+AGG + chr7_3:77888033-77888052 None:intergenic 25.0%
! TAAATTATCACTGATGTCTA+CGG - chr7_3:77888033-77888052 Msa1126340:intron 25.0%
!!! AGCTTTTGCTTTGAATAATA+AGG - chr7_3:77888173-77888192 Msa1126340:intron 25.0%
!!! GCTTTTGCTTTGAATAATAA+GGG - chr7_3:77888174-77888193 Msa1126340:intron 25.0%
!! CTTTAAAAATTACAATCAGC+TGG + chr7_3:77888759-77888778 None:intergenic 25.0%
!! CAGCTGATTGTAATTTTTAA+AGG - chr7_3:77888757-77888776 Msa1126340:CDS 25.0%
! TTCTATTATACATACATGGA+TGG + chr7_3:77888883-77888902 None:intergenic 25.0%
! TAATAGAAAATAGTTCAAGG+GGG - chr7_3:77888895-77888914 Msa1126340:CDS 25.0%
! TAAAAAGTTAAAAGATGTGG+TGG - chr7_3:77888948-77888967 Msa1126340:exon 25.0%
! ATCAGAATACATACATTCAA+AGG + chr7_3:77889014-77889033 None:intergenic 25.0%
!!! TTGATTTTGATTTCGCGATT+AGG - chr7_3:77884092-77884111 Msa1126340:three_prime_UTR 30.0%
!!! TGATTTTGATTTCGCGATTA+GGG - chr7_3:77884093-77884112 Msa1126340:three_prime_UTR 30.0%
ATTCCTATCTAACTACAGAA+GGG + chr7_3:77884484-77884503 None:intergenic 30.0%
TCCAAAGAAAAAAGAACCAA+TGG - chr7_3:77884508-77884527 Msa1126340:intron 30.0%
!!! TCCATTGGTTCTTTTTTCTT+TGG + chr7_3:77884512-77884531 None:intergenic 30.0%
! ATTGTATTTCTACACAACTC+AGG + chr7_3:77884713-77884732 None:intergenic 30.0%
TGTTGTAGATTGTTAATGCA+AGG - chr7_3:77884755-77884774 Msa1126340:intron 30.0%
GTTGTAGATTGTTAATGCAA+GGG - chr7_3:77884756-77884775 Msa1126340:intron 30.0%
! TATGTAGAAAATGGACTCAT+GGG + chr7_3:77885163-77885182 None:intergenic 30.0%
! TTATGTAGAAAATGGACTCA+TGG + chr7_3:77885164-77885183 None:intergenic 30.0%
GAGTTGGGAATAAATGATTA+AGG + chr7_3:77885187-77885206 None:intergenic 30.0%
! GTTGATTTCATTGATGAGTT+GGG + chr7_3:77885202-77885221 None:intergenic 30.0%
CAAAGAAAATCGAAGAAGAA+AGG - chr7_3:77885273-77885292 Msa1126340:intron 30.0%
! TGAAGATCCTTTTATGTTGT+TGG - chr7_3:77885307-77885326 Msa1126340:intron 30.0%
!! GAGTTTTGTGATGATTTTTC+TGG - chr7_3:77885408-77885427 Msa1126340:intron 30.0%
TTGTCCCTTAACTTAATTTC+AGG + chr7_3:77885547-77885566 None:intergenic 30.0%
GCTCCTTAATAGAATTTCTT+TGG + chr7_3:77885584-77885603 None:intergenic 30.0%
TATTTCAGATTTGATTCAGG+TGG - chr7_3:77885709-77885728 Msa1126340:intron 30.0%
TATATACTCTTGGGATTTGT+CGG - chr7_3:77885753-77885772 Msa1126340:intron 30.0%
! TTAGGCTTTTGAATGATTTC+AGG - chr7_3:77885830-77885849 Msa1126340:intron 30.0%
AGAAAACTCATTACTTCCTT+AGG + chr7_3:77885976-77885995 None:intergenic 30.0%
! AGGAAGTAATGAGTTTTCTA+AGG - chr7_3:77885977-77885996 Msa1126340:intron 30.0%
!! AATTTCAACTTTTGAAAGGC+TGG - chr7_3:77886050-77886069 Msa1126340:intron 30.0%
! TAACAACTCTGAAGATAGAA+GGG + chr7_3:77886218-77886237 None:intergenic 30.0%
! ATAACAACTCTGAAGATAGA+AGG + chr7_3:77886219-77886238 None:intergenic 30.0%
AAATATAAACATACCTCGTC+TGG + chr7_3:77886294-77886313 None:intergenic 30.0%
AGGTATGTTTATATTTACCG+TGG - chr7_3:77886298-77886317 Msa1126340:intron 30.0%
ATATTAGGAAAGACAAACCA+CGG + chr7_3:77886318-77886337 None:intergenic 30.0%
CACCCCATATAATGAATATT+AGG + chr7_3:77886333-77886352 None:intergenic 30.0%
TATCCAGAACCAGTAAAATA+AGG - chr7_3:77886494-77886513 Msa1126340:CDS 30.0%
!!! AATCCTTATTTTACTGGTTC+TGG + chr7_3:77886500-77886519 None:intergenic 30.0%
!!! CATTGCAATCCTTATTTTAC+TGG + chr7_3:77886506-77886525 None:intergenic 30.0%
GGATAATGAAAAGATGCAAT+AGG - chr7_3:77886528-77886547 Msa1126340:CDS 30.0%
! ATTTTTAACCACGATGTTAC+AGG + chr7_3:77886778-77886797 None:intergenic 30.0%
AAAAGATATCCTGCAAAACA+AGG + chr7_3:77887049-77887068 None:intergenic 30.0%
GTATAGACATATTACGGTAA+TGG - chr7_3:77887249-77887268 Msa1126340:intron 30.0%
TGATGACTTCTAACCAAAAT+AGG + chr7_3:77887468-77887487 None:intergenic 30.0%
! ATGGTCTTGAAAATAAAGTC+TGG + chr7_3:77887565-77887584 None:intergenic 30.0%
GAAAAGGAAAACTTCCAATA+AGG + chr7_3:77887735-77887754 None:intergenic 30.0%
ACTACTATGGCTTATCATAT+TGG - chr7_3:77887798-77887817 Msa1126340:intron 30.0%
TTGACAAAAAAAGCTCTGTT+TGG + chr7_3:77888332-77888351 None:intergenic 30.0%
!!! AGAGCTAAAAGCTCTTTTTT+TGG - chr7_3:77888375-77888394 Msa1126340:intron 30.0%
!!! GAGCTAAAAGCTCTTTTTTT+GGG - chr7_3:77888376-77888395 Msa1126340:intron 30.0%
CTGCATCTATTCTCTTAAAA+TGG - chr7_3:77888593-77888612 Msa1126340:intron 30.0%
! GGATTGAAAGATTGAGTTTT+TGG - chr7_3:77888628-77888647 Msa1126340:intron 30.0%
CAAAATGTTCCTATCTCTTA+TGG + chr7_3:77888709-77888728 None:intergenic 30.0%
TGTATGTATTCTGATTCTGA+TGG - chr7_3:77889019-77889038 Msa1126340:five_prime_UTR 30.0%
! TTTTTCGTACAACTCGGATT+GGG + chr7_3:77883702-77883721 None:intergenic 35.0%
!!! TTTTTTCGTACAACTCGGAT+TGG + chr7_3:77883703-77883722 None:intergenic 35.0%
GTACGAAAAAATACTAACCG+AGG - chr7_3:77883712-77883731 Msa1126340:three_prime_UTR 35.0%
! TGTTGCATTTGCACTGTTTT+TGG + chr7_3:77883773-77883792 None:intergenic 35.0%
TCTTTGACGAAAACTTGAAG+AGG + chr7_3:77883998-77884017 None:intergenic 35.0%
!! GGTTTGTTTCCACTCTATTT+TGG - chr7_3:77884330-77884349 Msa1126340:intron 35.0%
TTAAGTGTTTGTGTCGTGTT+AGG + chr7_3:77884382-77884401 None:intergenic 35.0%
CACGACACAAACACTTAAAA+CGG - chr7_3:77884384-77884403 Msa1126340:intron 35.0%
TTGAATGTAATCACATGCGT+CGG - chr7_3:77884434-77884453 Msa1126340:intron 35.0%
TTTCCCTTCTGTAGTTAGAT+AGG - chr7_3:77884478-77884497 Msa1126340:intron 35.0%
GATTCCTATCTAACTACAGA+AGG + chr7_3:77884485-77884504 None:intergenic 35.0%
ATGCGCATATATCTTCCTAA+AGG + chr7_3:77884568-77884587 None:intergenic 35.0%
TCGAATTGTTGTATTACCTC+CGG - chr7_3:77884611-77884630 Msa1126340:intron 35.0%
AGTTATCTGACAGCATAACT+TGG + chr7_3:77884678-77884697 None:intergenic 35.0%
ACATGAATAACAATGCCACT+TGG - chr7_3:77884798-77884817 Msa1126340:intron 35.0%
! CATGAATAACAATGCCACTT+GGG - chr7_3:77884799-77884818 Msa1126340:intron 35.0%
! ATGAATAACAATGCCACTTG+GGG - chr7_3:77884800-77884819 Msa1126340:intron 35.0%
CATCATATTCATGCTCTAGT+CGG - chr7_3:77884838-77884857 Msa1126340:intron 35.0%
AAGTGCTTCCTTGAAAAGAT+CGG + chr7_3:77884884-77884903 None:intergenic 35.0%
! AAATGGACTCATGGGTTTAA+GGG + chr7_3:77885155-77885174 None:intergenic 35.0%
! AAAATGGACTCATGGGTTTA+AGG + chr7_3:77885156-77885175 None:intergenic 35.0%
! GGTTGATTTCATTGATGAGT+TGG + chr7_3:77885203-77885222 None:intergenic 35.0%
!! TTTCTTTGTTTCTACGGAGT+TGG + chr7_3:77885261-77885280 None:intergenic 35.0%
TAGCACTCCAACAACATAAA+AGG + chr7_3:77885317-77885336 None:intergenic 35.0%
!! TTTTATGTTGTTGGAGTGCT+AGG - chr7_3:77885316-77885335 Msa1126340:CDS 35.0%
! ATTCTATTAAGGAGCACGAA+TGG - chr7_3:77885589-77885608 Msa1126340:intron 35.0%
TTGGAAAGAAAAAGCGAGAA+AGG - chr7_3:77885643-77885662 Msa1126340:intron 35.0%
TGGAAAGAAAAAGCGAGAAA+GGG - chr7_3:77885644-77885663 Msa1126340:intron 35.0%
TTCAACTCCATCATCAAGAT+GGG + chr7_3:77885899-77885918 None:intergenic 35.0%
AGAAGTCACATTTGAACCTA+AGG - chr7_3:77885957-77885976 Msa1126340:intron 35.0%
TAAGCGAAAGTTAGGATCAA+TGG - chr7_3:77886149-77886168 Msa1126340:intron 35.0%
AAGCGAAAGTTAGGATCAAT+GGG - chr7_3:77886150-77886169 Msa1126340:intron 35.0%
AAAGTTAGGATCAATGGGAA+TGG - chr7_3:77886155-77886174 Msa1126340:intron 35.0%
!!! TTTTGGGATGCTTATGTATC+AGG - chr7_3:77886402-77886421 Msa1126340:intron 35.0%
ATCCACACTACTATCAACTA+CGG + chr7_3:77886826-77886845 None:intergenic 35.0%
!! TAGTTGATAGTAGTGTGGAT+TGG - chr7_3:77886826-77886845 Msa1126340:CDS 35.0%
!! GTTCTTTGGTTCTCTACTAA+TGG - chr7_3:77886935-77886954 Msa1126340:intron 35.0%
TGTGTACTTCTTTAACAGAG+TGG - chr7_3:77887187-77887206 Msa1126340:intron 35.0%
!!! AGTTTTTTATCCTACACTGC+AGG - chr7_3:77887339-77887358 Msa1126340:intron 35.0%
!! ATAGCTCTGCAGTATTTTCT+TGG - chr7_3:77887373-77887392 Msa1126340:intron 35.0%
AATACAGTGATGTTTCAGCT+TGG + chr7_3:77887402-77887421 None:intergenic 35.0%
AACATCACTGTATTCTCTTG+TGG - chr7_3:77887408-77887427 Msa1126340:intron 35.0%
! GCATATCGTGATACCTATTT+TGG - chr7_3:77887452-77887471 Msa1126340:intron 35.0%
!!! CTTTATTTTCAAGACCATGC+AGG - chr7_3:77887567-77887586 Msa1126340:intron 35.0%
!! GGTTGACAGGATTTTTGAAA+AGG + chr7_3:77887751-77887770 None:intergenic 35.0%
! ATTCTGGTCCTTTGAAGATA+TGG + chr7_3:77887772-77887791 None:intergenic 35.0%
CCATAGTAGTATCTGAATTC+TGG + chr7_3:77887788-77887807 None:intergenic 35.0%
CCAGAATTCAGATACTACTA+TGG - chr7_3:77887785-77887804 Msa1126340:intron 35.0%
GATCACACTGACGATTATTT+AGG - chr7_3:77887841-77887860 Msa1126340:intron 35.0%
TAGAAGTTCCACAGCAATTA+TGG + chr7_3:77887878-77887897 None:intergenic 35.0%
ATAATTGCTGTGGAACTTCT+AGG - chr7_3:77887877-77887896 Msa1126340:intron 35.0%
ATCAACGTTCTCCATTTCAT+TGG - chr7_3:77887900-77887919 Msa1126340:intron 35.0%
! CATGAGTATTGCCAATGAAA+TGG + chr7_3:77887914-77887933 None:intergenic 35.0%
GTAATCACATGTACTAGTGT+CGG + chr7_3:77887992-77888011 None:intergenic 35.0%
! GATAAGCTAGTTGAAGTGTT+TGG - chr7_3:77888136-77888155 Msa1126340:intron 35.0%
ACGAGCTTATAGCTTATTTC+AGG + chr7_3:77888284-77888303 None:intergenic 35.0%
AATCACTACACCAGTGATAA+AGG + chr7_3:77888471-77888490 None:intergenic 35.0%
TCAGGAAATGAATTAGCACA+TGG - chr7_3:77888549-77888568 Msa1126340:CDS 35.0%
TTAAAATGGCGCATATCACA+TGG - chr7_3:77888607-77888626 Msa1126340:intron 35.0%
!! AAGATTGAGTTTTTGGATGC+TGG - chr7_3:77888635-77888654 Msa1126340:intron 35.0%
!! AGATTGAGTTTTTGGATGCT+GGG - chr7_3:77888636-77888655 Msa1126340:intron 35.0%
AGGACAAAACCATAAGAGAT+AGG - chr7_3:77888697-77888716 Msa1126340:CDS 35.0%
! TTTTGACCTTTTATGCATGC+TGG - chr7_3:77888724-77888743 Msa1126340:CDS 35.0%
!!! GGTATTGAAAGTTGCTTTTG+TGG - chr7_3:77888987-77889006 Msa1126340:five_prime_UTR 35.0%
ATGTATTCTGATTCTGATGG+AGG - chr7_3:77889022-77889041 Msa1126340:five_prime_UTR 35.0%
GGGCCTTTACCGTTAAAAAA+AGG - chr7_3:77883676-77883695 Msa1126340:three_prime_UTR 40.0%
!!! GGGCCTTTTTTTAACGGTAA+AGG + chr7_3:77883682-77883701 None:intergenic 40.0%
!!! CGGATTGGGCCTTTTTTTAA+CGG + chr7_3:77883688-77883707 None:intergenic 40.0%
CGAAAAAATACTAACCGAGG+AGG - chr7_3:77883715-77883734 Msa1126340:three_prime_UTR 40.0%
GATGGTAGCAAAGAGATAGT+GGG + chr7_3:77883743-77883762 None:intergenic 40.0%
!!! TTTGCACTGTTTTTGGTGCT+GGG + chr7_3:77883766-77883785 None:intergenic 40.0%
!!! ATTTGCACTGTTTTTGGTGC+TGG + chr7_3:77883767-77883786 None:intergenic 40.0%
TTTAAAGACCTTCGATCCCT+CGG - chr7_3:77884040-77884059 Msa1126340:three_prime_UTR 40.0%
AAACTGAAAACGCATACCGA+GGG + chr7_3:77884059-77884078 None:intergenic 40.0%
! TGATTTCGCGATTAGGGTTT+TGG - chr7_3:77884099-77884118 Msa1126340:three_prime_UTR 40.0%
!! GATTAGGGTTTTGGTATCGT+CGG - chr7_3:77884108-77884127 Msa1126340:three_prime_UTR 40.0%
AGCTGGAGTTCTTAGTGAAA+CGG - chr7_3:77884181-77884200 Msa1126340:intron 40.0%
TTTCCAAGCATAGGCAACAA+CGG + chr7_3:77884264-77884283 None:intergenic 40.0%
AACAAACCTAGTCCTGTCAA+CGG + chr7_3:77884318-77884337 None:intergenic 40.0%
!!! TTCCACTCTATTTTGGTTCG+TGG - chr7_3:77884337-77884356 Msa1126340:intron 40.0%
GATATATGCGCATAGTTGAG+AGG - chr7_3:77884575-77884594 Msa1126340:intron 40.0%
!! CTACTGCTTGCTATGAATTC+CGG + chr7_3:77884633-77884652 None:intergenic 40.0%
GATTGTTAATGCAAGGGTCA+AGG - chr7_3:77884762-77884781 Msa1126340:intron 40.0%
!! AATGTGTGCCGATCTTTTCA+AGG - chr7_3:77884873-77884892 Msa1126340:intron 40.0%
!!! CTTTTCAAGGAAGCACTTAC+CGG - chr7_3:77884886-77884905 Msa1126340:exon 40.0%
ACGGAGTTGGAATTTGGTTA+TGG + chr7_3:77885248-77885267 None:intergenic 40.0%
GTTTCTACGGAGTTGGAATT+TGG + chr7_3:77885254-77885273 None:intergenic 40.0%
CCATGCATAGGCTTATTTGT+TGG + chr7_3:77885615-77885634 None:intergenic 40.0%
CCAACAAATAAGCCTATGCA+TGG - chr7_3:77885612-77885631 Msa1126340:intron 40.0%
CCAAAACTTCAACCATGCAT+AGG + chr7_3:77885627-77885646 None:intergenic 40.0%
! CCTATGCATGGTTGAAGTTT+TGG - chr7_3:77885624-77885643 Msa1126340:intron 40.0%
GTGAGCAGCTAATGTAACAT+GGG + chr7_3:77885810-77885829 None:intergenic 40.0%
AGTGAGCAGCTAATGTAACA+TGG + chr7_3:77885811-77885830 None:intergenic 40.0%
GTTACATTAGCTGCTCACTT+AGG - chr7_3:77885812-77885831 Msa1126340:intron 40.0%
! TTTTTCCCCCATCTTGATGA+TGG - chr7_3:77885889-77885908 Msa1126340:intron 40.0%
TCAACTCCATCATCAAGATG+GGG + chr7_3:77885898-77885917 None:intergenic 40.0%
CTTCAACTCCATCATCAAGA+TGG + chr7_3:77885900-77885919 None:intergenic 40.0%
!! TCAGATTCAAAGAAGCGTTG+TGG - chr7_3:77885928-77885947 Msa1126340:intron 40.0%
!! CAGATTCAAAGAAGCGTTGT+GGG - chr7_3:77885929-77885948 Msa1126340:intron 40.0%
! ATTTGGCACTTCCTTTTCCA+AGG + chr7_3:77886025-77886044 None:intergenic 40.0%
! AGAACTCTCATTTGGTGAAG+AGG + chr7_3:77886103-77886122 None:intergenic 40.0%
TTCACCAAATGAGAGTTCTG+AGG - chr7_3:77886104-77886123 Msa1126340:intron 40.0%
TGTTCCTCAGAACTCTCATT+TGG + chr7_3:77886111-77886130 None:intergenic 40.0%
TCTGAGGAACATAACTATCG+TGG - chr7_3:77886120-77886139 Msa1126340:intron 40.0%
! GGTTCTAGTAAGCGAAAGTT+AGG - chr7_3:77886141-77886160 Msa1126340:intron 40.0%
AGAAAAGAAAGCGACAGCAT+CGG + chr7_3:77886271-77886290 None:intergenic 40.0%
!! TAATGACTCGGCGTTAGTTT+TGG - chr7_3:77886385-77886404 Msa1126340:intron 40.0%
!!! AATGACTCGGCGTTAGTTTT+GGG - chr7_3:77886386-77886405 Msa1126340:intron 40.0%
CATTGAGAGAGAAAGCTACA+GGG + chr7_3:77886627-77886646 None:intergenic 40.0%
TCATTGAGAGAGAAAGCTAC+AGG + chr7_3:77886628-77886647 None:intergenic 40.0%
TTCTCTCTCAATGACCATCT+TGG - chr7_3:77886634-77886653 Msa1126340:CDS 40.0%
!!! TTATTTTGAATCATGGCGCC+AGG - chr7_3:77886752-77886771 Msa1126340:CDS 40.0%
ATGGCAGCTGAATTAGAGAT+GGG + chr7_3:77886878-77886897 None:intergenic 40.0%
TATGGCAGCTGAATTAGAGA+TGG + chr7_3:77886879-77886898 None:intergenic 40.0%
TCTACTAATGGCCGTTTGAA+GGG - chr7_3:77886947-77886966 Msa1126340:intron 40.0%
AGATGTCAACTCCCTTCAAA+CGG + chr7_3:77886961-77886980 None:intergenic 40.0%
!!! TTGCTTTGTCCTTGTTTTGC+AGG - chr7_3:77887037-77887056 Msa1126340:intron 40.0%
CACTTCAAACAGTCACTCAA+AGG + chr7_3:77887306-77887325 None:intergenic 40.0%
CATCATTCTTGACATACTCG+AGG - chr7_3:77887483-77887502 Msa1126340:intron 40.0%
AGGAAAACTTCCAATAAGGC+CGG + chr7_3:77887731-77887750 None:intergenic 40.0%
! CCTTTGAAGATATGGTTGAC+AGG + chr7_3:77887764-77887783 None:intergenic 40.0%
CCTGTCAACCATATCTTCAA+AGG - chr7_3:77887761-77887780 Msa1126340:intron 40.0%
TCAGTGTGATCATACTTCCT+CGG + chr7_3:77887832-77887851 None:intergenic 40.0%
GTTAAGTGCCATAATTGCTG+TGG - chr7_3:77887867-77887886 Msa1126340:intron 40.0%
ACAACTTCAACCTGAAGTGT+CGG + chr7_3:77887942-77887961 None:intergenic 40.0%
GGTAACACAAAAGCTCTGTT+TGG + chr7_3:77888311-77888330 None:intergenic 40.0%
ACTAACATGTAGGCTCTGTT+TGG + chr7_3:77888406-77888425 None:intergenic 40.0%
!!! TCTCTTATGGTTTTGTCCTG+TGG + chr7_3:77888696-77888715 None:intergenic 40.0%
TTCCATCCAGCATGCATAAA+AGG + chr7_3:77888733-77888752 None:intergenic 40.0%
CAGAGAAGATAGAGATGTGT+AGG + chr7_3:77888845-77888864 None:intergenic 40.0%
CTCAGTCCTAGATTCTCAAT+TGG + chr7_3:77888921-77888940 None:intergenic 40.0%
! CAATTGAGAATCTAGGACTG+AGG - chr7_3:77888919-77888938 Msa1126340:CDS 40.0%
GGATGGTAGCAAAGAGATAG+TGG + chr7_3:77883744-77883763 None:intergenic 45.0%
!!! TTGCACTGTTTTTGGTGCTG+GGG + chr7_3:77883765-77883784 None:intergenic 45.0%
ATAGCTAGAGCAACCTGCTT+CGG + chr7_3:77883866-77883885 None:intergenic 45.0%
GCTCTAGCTATGGACAAACT+CGG - chr7_3:77883875-77883894 Msa1126340:three_prime_UTR 45.0%
AGAGGCTTATTGCCTTGATG+AGG + chr7_3:77883980-77883999 None:intergenic 45.0%
GAAACTGAAAACGCATACCG+AGG + chr7_3:77884060-77884079 None:intergenic 45.0%
GAGTTCTTAGTGAAACGGCA+CGG - chr7_3:77884186-77884205 Msa1126340:intron 45.0%
! ACGGTCACGGAAGGATTTTT+GGG - chr7_3:77884205-77884224 Msa1126340:intron 45.0%
! GAGTTGTCGTTTCCAAGCAT+AGG + chr7_3:77884273-77884292 None:intergenic 45.0%
GACCACGAACCAAAATAGAG+TGG + chr7_3:77884342-77884361 None:intergenic 45.0%
CAACTCCATCATCAAGATGG+GGG + chr7_3:77885897-77885916 None:intergenic 45.0%
TGTTCTGCAGTCCTTGGAAA+AGG - chr7_3:77886011-77886030 Msa1126340:intron 45.0%
!! CAACTTTTGAAAGGCTGGAC+TGG - chr7_3:77886055-77886074 Msa1126340:intron 45.0%
! ATTTGGTGAAGAGGTGAGTG+TGG + chr7_3:77886094-77886113 None:intergenic 45.0%
TCTATGACTGCAACCTTCTC+TGG + chr7_3:77886186-77886205 None:intergenic 45.0%
GTTATATCCTTGCATCCTGC+TGG - chr7_3:77886234-77886253 Msa1126340:intron 45.0%
GAAAAGAAAGCGACAGCATC+GGG + chr7_3:77886270-77886289 None:intergenic 45.0%
GGGGTGTGAACTATTTGTTC+TGG - chr7_3:77886347-77886366 Msa1126340:intron 45.0%
GGTTGGGAAACAGTTAGACT+TGG + chr7_3:77886578-77886597 None:intergenic 45.0%
AGTTATGCAGAGTGGAGGTT+GGG + chr7_3:77886594-77886613 None:intergenic 45.0%
GTTGCAACTTTCTGCCAAGA+TGG + chr7_3:77886651-77886670 None:intergenic 45.0%
TCTCTTCTTTCTCCTCCCAT+TGG - chr7_3:77886710-77886729 Msa1126340:CDS 45.0%
CTCTTCTTTCTCCTCCCATT+GGG - chr7_3:77886711-77886730 Msa1126340:CDS 45.0%
CAACTACGGCTTCAAAAGAG+AGG + chr7_3:77886812-77886831 None:intergenic 45.0%
!! AGCCGTAGTTGATAGTAGTG+TGG - chr7_3:77886821-77886840 Msa1126340:CDS 45.0%
CTCTACTAATGGCCGTTTGA+AGG - chr7_3:77886946-77886965 Msa1126340:intron 45.0%
TTTGCAGAGACTAGACAGAG+TGG - chr7_3:77886985-77887004 Msa1126340:intron 45.0%
TGGAAGCTATGTGCATGCAA+GGG - chr7_3:77887207-77887226 Msa1126340:intron 45.0%
ACAGTCACTCAAAGGATCAC+AGG + chr7_3:77887298-77887317 None:intergenic 45.0%
GTTGCATATTCCTGCAGTGT+AGG + chr7_3:77887352-77887371 None:intergenic 45.0%
! TTTCCTTTTCCCTGTAGCAC+TGG - chr7_3:77887528-77887547 Msa1126340:intron 45.0%
AATCCAGTGCTACAGGGAAA+AGG + chr7_3:77887534-77887553 None:intergenic 45.0%
AACTGCAAATCGAACCTGCA+TGG + chr7_3:77887584-77887603 None:intergenic 45.0%
AAAACTTCCAATAAGGCCGG+TGG + chr7_3:77887728-77887747 None:intergenic 45.0%
ACAGACACATGTCAGCAACT+TGG + chr7_3:77887967-77887986 None:intergenic 45.0%
AAGACCTGGCACTAACATGT+AGG + chr7_3:77888416-77888435 None:intergenic 45.0%
ATGAAGCAGCGAAAAAGACC+TGG + chr7_3:77888430-77888449 None:intergenic 45.0%
ACCAGTGATAAAGGAGGAAG+GGG + chr7_3:77888462-77888481 None:intergenic 45.0%
CACCAGTGATAAAGGAGGAA+GGG + chr7_3:77888463-77888482 None:intergenic 45.0%
ACACCAGTGATAAAGGAGGA+AGG + chr7_3:77888464-77888483 None:intergenic 45.0%
CACTACACCAGTGATAAAGG+AGG + chr7_3:77888468-77888487 None:intergenic 45.0%
GCAGGCAATGATCAATGTCA+GGG + chr7_3:77888674-77888693 None:intergenic 45.0%
!!! TTATGGTTTTGTCCTGTGGC+AGG + chr7_3:77888692-77888711 None:intergenic 45.0%
! GACCTTTTATGCATGCTGGA+TGG - chr7_3:77888728-77888747 Msa1126340:CDS 45.0%
!! AGAGATAGTGGGATCCTCCT+CGG + chr7_3:77883732-77883751 None:intergenic 50.0%
!!! ACTGTTTTTGGTGCTGGGGA+TGG + chr7_3:77883761-77883780 None:intergenic 50.0%
GCAACAAACTCAGCAAGCCA+CGG - chr7_3:77883787-77883806 Msa1126340:three_prime_UTR 50.0%
GAAGCAGGTTGCTCTAGCTA+TGG - chr7_3:77883865-77883884 Msa1126340:three_prime_UTR 50.0%
GATGTCGGCGATGATACGTT+CGG + chr7_3:77883906-77883925 None:intergenic 50.0%
ATCATCGCCGACATCCGAAT+TGG - chr7_3:77883911-77883930 Msa1126340:three_prime_UTR 50.0%
ATCAGCGCCAATTCGGATGT+CGG + chr7_3:77883921-77883940 None:intergenic 50.0%
CAGCGATGAATAGAGCTTCG+AGG + chr7_3:77883949-77883968 None:intergenic 50.0%
GAAGCTCTATTCATCGCTGC+TGG - chr7_3:77883950-77883969 Msa1126340:three_prime_UTR 50.0%
GGAAAGGAGCTTGAAGAAGC+TGG - chr7_3:77884164-77884183 Msa1126340:three_prime_UTR 50.0%
TTAGTGAAACGGCACGGTCA+CGG - chr7_3:77884192-77884211 Msa1126340:intron 50.0%
! CACGGTCACGGAAGGATTTT+TGG - chr7_3:77884204-77884223 Msa1126340:intron 50.0%
! CGGTCACGGAAGGATTTTTG+GGG - chr7_3:77884206-77884225 Msa1126340:intron 50.0%
TGTCGTGTTAGGAGTCTGCT+AGG + chr7_3:77884371-77884390 None:intergenic 50.0%
!! CTGCTTGCTATGAATTCCGG+AGG + chr7_3:77884630-77884649 None:intergenic 50.0%
ACACAACTCAGGCACGTATG+AGG + chr7_3:77884702-77884721 None:intergenic 50.0%
TCGGCACACATTCATGTGAC+TGG + chr7_3:77884865-77884884 None:intergenic 50.0%
ACCAGATGTTCTGCAGTCCT+TGG - chr7_3:77886005-77886024 Msa1126340:intron 50.0%
TCCAAGGACTGCAGAACATC+TGG + chr7_3:77886009-77886028 None:intergenic 50.0%
AATGGAACCAGCAGGATGCA+AGG + chr7_3:77886244-77886263 None:intergenic 50.0%
! CGCTTTCTTTTCTCCAGACG+AGG - chr7_3:77886278-77886297 Msa1126340:intron 50.0%
CAGTTATGCAGAGTGGAGGT+TGG + chr7_3:77886595-77886614 None:intergenic 50.0%
ATGGCAGTTATGCAGAGTGG+AGG + chr7_3:77886599-77886618 None:intergenic 50.0%
TGCATGGCAGTTATGCAGAG+TGG + chr7_3:77886602-77886621 None:intergenic 50.0%
TTCTTTCTCCTCCCATTGGG+AGG - chr7_3:77886714-77886733 Msa1126340:CDS 50.0%
AGTCTATGGCTCCTCCCAAT+GGG + chr7_3:77886728-77886747 None:intergenic 50.0%
AAGTCTATGGCTCCTCCCAA+TGG + chr7_3:77886729-77886748 None:intergenic 50.0%
TAACCACGATGTTACAGGCC+TGG + chr7_3:77886773-77886792 None:intergenic 50.0%
GTGGAAGCTATGTGCATGCA+AGG - chr7_3:77887206-77887225 Msa1126340:intron 50.0%
GGAAGCTATGTGCATGCAAG+GGG - chr7_3:77887208-77887227 Msa1126340:intron 50.0%
GAAGCTATGTGCATGCAAGG+GGG - chr7_3:77887209-77887228 Msa1126340:intron 50.0%
AAGCTATGTGCATGCAAGGG+GGG - chr7_3:77887210-77887229 Msa1126340:intron 50.0%
GCTGCAAATCCAGTGCTACA+GGG + chr7_3:77887540-77887559 None:intergenic 50.0%
AGCTGCAAATCCAGTGCTAC+AGG + chr7_3:77887541-77887560 None:intergenic 50.0%
TATTGTTAGCCCCAGTCCAC+CGG - chr7_3:77887709-77887728 Msa1126340:intron 50.0%
! TCATATTGGCTGCATCTCCG+AGG - chr7_3:77887812-77887831 Msa1126340:intron 50.0%
!! TCATGTAGCACCGACACTTC+AGG - chr7_3:77887929-77887948 Msa1126340:intron 50.0%
CTGATGTCTACGGCTCTGTT+TGG - chr7_3:77888043-77888062 Msa1126340:intron 50.0%
AGAGCCTACATGTTAGTGCC+AGG - chr7_3:77888409-77888428 Msa1126340:intron 50.0%
CCAGTGATAAAGGAGGAAGG+GGG + chr7_3:77888461-77888480 None:intergenic 50.0%
GGCAGGCAATGATCAATGTC+AGG + chr7_3:77888675-77888694 None:intergenic 50.0%
CATTGATCATTGCCTGCCAC+AGG - chr7_3:77888677-77888696 Msa1126340:intron 50.0%
AGGGGGCCAATTGAGAATCT+AGG - chr7_3:77888912-77888931 Msa1126340:CDS 50.0%
GGTGGATGCAAATGTTGCTG+TGG - chr7_3:77888966-77888985 Msa1126340:five_prime_UTR 50.0%
ACAAACTCAGCAAGCCACGG+CGG - chr7_3:77883790-77883809 Msa1126340:three_prime_UTR 55.0%
GGAGACGATCAGCGCCAATT+CGG + chr7_3:77883928-77883947 None:intergenic 55.0%
GCTGCTGGTCAACCTCATCA+AGG - chr7_3:77883965-77883984 Msa1126340:three_prime_UTR 55.0%
AACGCATACCGAGGGATCGA+AGG + chr7_3:77884051-77884070 None:intergenic 55.0%
TTGGGGATTGCATATGCCGC+TGG - chr7_3:77884223-77884242 Msa1126340:intron 55.0%
!! ATGCCGCTGGTTTGTCCAGA+TGG - chr7_3:77884236-77884255 Msa1126340:intron 55.0%
GCACCATCTGGACAAACCAG+CGG + chr7_3:77884242-77884261 None:intergenic 55.0%
TAGGCAACAACGGCACCATC+TGG + chr7_3:77884254-77884273 None:intergenic 55.0%
! GTGCCGTTGTTGCCTATGCT+TGG - chr7_3:77884258-77884277 Msa1126340:intron 55.0%
GCTTGGAAACGACAACTCGC+CGG - chr7_3:77884275-77884294 Msa1126340:intron 55.0%
CTTCTGCCGTTGACAGGACT+AGG - chr7_3:77884309-77884328 Msa1126340:intron 55.0%
GGGAATGGTTGCTCCAGAGA+AGG - chr7_3:77886170-77886189 Msa1126340:intron 55.0%
TCGGGATCAATGGAACCAGC+AGG + chr7_3:77886252-77886271 None:intergenic 55.0%
! AGCGACAGCATCGGGATCAA+TGG + chr7_3:77886262-77886281 None:intergenic 55.0%
AGAAAGCTACAGGGCGTGCA+TGG + chr7_3:77886618-77886637 None:intergenic 55.0%
! TCCAATAAGGCCGGTGGACT+GGG + chr7_3:77887722-77887741 None:intergenic 55.0%
TTCCAATAAGGCCGGTGGAC+TGG + chr7_3:77887723-77887742 None:intergenic 55.0%
CCCCCTTCCTCCTTTATCAC+TGG - chr7_3:77888458-77888477 Msa1126340:CDS 55.0%
GGTTGAGAAAGTTGCCGCCG+TGG + chr7_3:77883807-77883826 None:intergenic 60.0%
GCTAGAGCAACCTGCTTCGG+AGG + chr7_3:77883863-77883882 None:intergenic 60.0%
TGAAACGGCACGGTCACGGA+AGG - chr7_3:77884196-77884215 Msa1126340:intron 60.0%
GGCAGAAGCTCCAGCTTGAC+CGG + chr7_3:77884297-77884316 None:intergenic 60.0%
CTGGAGCTTCTGCCGTTGAC+AGG - chr7_3:77884303-77884322 Msa1126340:intron 60.0%
TGAGCTCGCATCACCCCAAG+TGG + chr7_3:77884816-77884835 None:intergenic 60.0%
CTATGGCTCCTCCCAATGGG+AGG + chr7_3:77886725-77886744 None:intergenic 60.0%
!! CCAATAAGGCCGGTGGACTG+GGG + chr7_3:77887721-77887740 None:intergenic 60.0%
TGGAGGAGGGAGGAGGAGTG+GGG + chr7_3:77883829-77883848 None:intergenic 65.0%
GTGGAGGAGGGAGGAGGAGT+GGG + chr7_3:77883830-77883849 None:intergenic 65.0%
!! CTGCTTCGGAGGTGCTTCCG+CGG + chr7_3:77883852-77883871 None:intergenic 65.0%
CGACAACTCGCCGGTCAAGC+TGG - chr7_3:77884284-77884303 Msa1126340:intron 65.0%
GCGCCAGGCCTGTAACATCG+TGG - chr7_3:77886767-77886786 Msa1126340:CDS 65.0%
! CCCCAGTCCACCGGCCTTAT+TGG - chr7_3:77887718-77887737 Msa1126340:intron 65.0%
GGAGGAGGGAGGAGGAGTGG+GGG + chr7_3:77883828-77883847 None:intergenic 70.0%
GGTGGAGGAGGGAGGAGGAG+TGG + chr7_3:77883831-77883850 None:intergenic 70.0%
TCCTCCTCCCTCCTCCACCG+CGG - chr7_3:77883832-77883851 Msa1126340:three_prime_UTR 70.0%
GGTGCTTCCGCGGTGGAGGA+GGG + chr7_3:77883842-77883861 None:intergenic 70.0%
AGGTGCTTCCGCGGTGGAGG+AGG + chr7_3:77883843-77883862 None:intergenic 70.0%
!! CTTCGGAGGTGCTTCCGCGG+TGG + chr7_3:77883849-77883868 None:intergenic 70.0%
!! CGCGGAAGCACCTCCGAAGC+AGG - chr7_3:77883850-77883869 Msa1126340:three_prime_UTR 70.0%
TCCGCGGTGGAGGAGGGAGG+AGG + chr7_3:77883836-77883855 None:intergenic 75.0%
GCTTCCGCGGTGGAGGAGGG+AGG + chr7_3:77883839-77883858 None:intergenic 75.0%
!! CGGAGGTGCTTCCGCGGTGG+AGG + chr7_3:77883846-77883865 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 77883660 77889082 77883660 ID=Msa1126340;Name=Msa1126340
chr7_3 mRNA 77883660 77889082 77883660 ID=Msa1126340-mRNA-1;Parent=Msa1126340;Name=Msa1126340-mRNA-1;_AED=0.09;_eAED=0.09;_QI=125|0.85|0.75|1|1|0.87|8|550|398
chr7_3 exon 77883660 77884189 77883660 ID=Msa1126340-mRNA-1:exon:21606;Parent=Msa1126340-mRNA-1
chr7_3 exon 77884880 77885074 77884880 ID=Msa1126340-mRNA-1:exon:21605;Parent=Msa1126340-mRNA-1
chr7_3 exon 77885154 77885197 77885154 ID=Msa1126340-mRNA-1:exon:21604;Parent=Msa1126340-mRNA-1
chr7_3 exon 77885313 77885381 77885313 ID=Msa1126340-mRNA-1:exon:21603;Parent=Msa1126340-mRNA-1
chr7_3 exon 77885478 77885537 77885478 ID=Msa1126340-mRNA-1:exon:21602;Parent=Msa1126340-mRNA-1
chr7_3 exon 77886443 77886862 77886443 ID=Msa1126340-mRNA-1:exon:21601;Parent=Msa1126340-mRNA-1
chr7_3 exon 77888426 77888577 77888426 ID=Msa1126340-mRNA-1:exon:21600;Parent=Msa1126340-mRNA-1
chr7_3 exon 77888681 77889082 77888681 ID=Msa1126340-mRNA-1:exon:21599;Parent=Msa1126340-mRNA-1
chr7_3 five_prime_UTR 77888958 77889082 77888958 ID=Msa1126340-mRNA-1:five_prime_utr;Parent=Msa1126340-mRNA-1
chr7_3 CDS 77888681 77888957 77888681 ID=Msa1126340-mRNA-1:cds;Parent=Msa1126340-mRNA-1
chr7_3 CDS 77888426 77888577 77888426 ID=Msa1126340-mRNA-1:cds;Parent=Msa1126340-mRNA-1
chr7_3 CDS 77886443 77886862 77886443 ID=Msa1126340-mRNA-1:cds;Parent=Msa1126340-mRNA-1
chr7_3 CDS 77885478 77885537 77885478 ID=Msa1126340-mRNA-1:cds;Parent=Msa1126340-mRNA-1
chr7_3 CDS 77885313 77885381 77885313 ID=Msa1126340-mRNA-1:cds;Parent=Msa1126340-mRNA-1
chr7_3 CDS 77885154 77885197 77885154 ID=Msa1126340-mRNA-1:cds;Parent=Msa1126340-mRNA-1
chr7_3 CDS 77884900 77885074 77884900 ID=Msa1126340-mRNA-1:cds;Parent=Msa1126340-mRNA-1
chr7_3 three_prime_UTR 77884880 77884899 77884880 ID=Msa1126340-mRNA-1:three_prime_utr;Parent=Msa1126340-mRNA-1
chr7_3 three_prime_UTR 77883660 77884189 77883660 ID=Msa1126340-mRNA-1:three_prime_utr;Parent=Msa1126340-mRNA-1
Gene Sequence

>Msa1126340

ATGCAACAAACTCAGCAAGCCACGGCGGCAACTTTCTCAACCCCCACTCCTCCTCCCTCCTCCACCGCGGAAGCACCTCCGAAGCAGGTTGCTCTAGCTATGGACAAACTCGGTCAAGCCGAACGTATCATCGCCGACATCCGAATTGGCGCTGATCGTCTCCTCGAAGCTCTATTCATCGCTGCTGGTCAACCTCATCAAGGCAATAAGCCTCTTCAAGTTTTCGTCAAAGAGAATGCTTCTATGCAACAGCATTTTAAAGACCTTCGATCCCTCGGAAAGGAGCTTGAAGAAGCTGGAGTTCTTAGTGAAACGGCACGGTCACGGAAGGATTTTTGGGGATTGCATATGCCGCTGGTTTGTCCAGATGGTGCCGTTGTTGCCTATGCTTGGAAACGACAACTCGCCGGTCAAGCTGGAGCTTCTGCCAAAAGACGTTTTTTCCCCCATCTTGATGATGGAGTTGAAGCTAATGAATCAGATTCAAAGAAGCGTTGTGGGTCTGAAGAAGTCACATTTGAACCTAAGGAAGTAATGAGTTTTCTAAGGACGCTACCAGATGTTCTGCAGTCCTTGGAAAAGGAAGTGCCAAATGTGAAAATTTCAACTTTTGAAAGGCTGGACTGGTTAAAATGTGCTTCCACACTCACCTCTTCACCAAATGAGAGTTCTGAGGAACATAACTATCGTGGTTCTAGTAAGCGAAAGTTAGGATCAATGGGAATGGTTGCTCCAGAGAAGGTTGCAGTCATAGAATTGCTGTGCCCTTCTATCTTCAGAGTTGTTATATCCTTGCATCCTGCTGGTTCCATTGATCCCGATGCTGTCGCTTTCTTTTCTCCAGACGAGAGTGGAAGCTATGTGCATGCAAGGGGGGTTTCAGTTCATCATGTGTATAGACATATTACGGAATATGCAACGATAGCTCTGCAGTATTTTCTTGGTAACCAAGCTGAAACATCACTGTATTCTCTTGTGCACTGGATTTGCAGCTACCAGACTTTATTTTCAAGACCATGCAGCAAATGTAAAAAGCTACTTGCCATAGATAAGCAATCAAATTTATTGTTAGCCCCAGTCCACCGGCCTTATTGGAAGTTTTCCTTTTCAAAAATCCTGTCAACCATATCTTCAAAGGACCAGAATTCAGATACTACTATGGCTTATCATATTGGCTGCATCTCCGAGGAAGTATGA
Protein sequence

>Msa1126340

MQQTQQATAATFSTPTPPPSSTAEAPPKQVALAMDKLGQAERIIADIRIGADRLLEALFIAAGQPHQGNKPLQVFVKENASMQQHFKDLRSLGKELEEAGVLSETARSRKDFWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAKRRFFPHLDDGVEANESDSKKRCGSEEVTFEPKEVMSFLRTLPDVLQSLEKEVPNVKISTFERLDWLKCASTLTSSPNESSEEHNYRGSSKRKLGSMGMVAPEKVAVIELLCPSIFRVVISLHPAGSIDPDAVAFFSPDESGSYVHARGVSVHHVYRHITEYATIALQYFLGNQAETSLYSLVHWICSYQTLFSRPCSKCKKLLAIDKQSNLLLAPVHRPYWKFSFSKILSTISSKDQNSDTTMAYHIGCISEEV*