Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1082470 | XP_024627015.1 | 96.497 | 571 | 15 | 1 | 1 | 571 | 1 | 566 | 0.0 | 1105 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1082470 | A0A396HDQ3 | 96.497 | 571 | 15 | 1 | 1 | 571 | 1 | 566 | 0.0 | 1105 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0058310 | Msa1082470 | 0.801313 | 9.551500e-49 | -8.615850e-47 |
| Msa0104800 | Msa1082470 | 0.804885 | 1.742334e-49 | -8.615850e-47 |
| Msa0620910 | Msa1082470 | 0.801106 | 1.053145e-48 | -8.615850e-47 |
| Msa0657810 | Msa1082470 | 0.802192 | 6.305329e-49 | -8.615850e-47 |
| Msa0763890 | Msa1082470 | 0.811564 | 6.573790e-51 | -8.615850e-47 |
| Msa0763920 | Msa1082470 | 0.815540 | 8.774042e-52 | -8.615850e-47 |
| Msa0773590 | Msa1082470 | 0.820164 | 7.924376e-53 | -8.615850e-47 |
| Msa0811040 | Msa1082470 | 0.802758 | 4.818285e-49 | -8.615850e-47 |
| Msa0151180 | Msa1082470 | 0.804700 | 1.904596e-49 | -8.615850e-47 |
| Msa0206830 | Msa1082470 | 0.803309 | 3.707274e-49 | -8.615850e-47 |
| Msa0207030 | Msa1082470 | 0.814726 | 1.330086e-51 | -8.615850e-47 |
| Msa0366210 | Msa1082470 | 0.833147 | 6.302323e-56 | -8.615850e-47 |
| Msa0377440 | Msa1082470 | 0.802345 | 5.864202e-49 | -8.615850e-47 |
| Msa0389910 | Msa1082470 | 0.815982 | 6.992836e-52 | -8.615850e-47 |
| Msa0394260 | Msa1082470 | 0.840386 | 8.971736e-58 | -8.615850e-47 |
| Msa0422180 | Msa1082470 | 0.812570 | 3.966741e-51 | -8.615850e-47 |
| Msa0992580 | Msa1082470 | 0.809177 | 2.152280e-50 | -8.615850e-47 |
| Msa1008750 | Msa1082470 | 0.824505 | 7.784825e-54 | -8.615850e-47 |
| Msa1063420 | Msa1082470 | 0.803235 | 3.840666e-49 | -8.615850e-47 |
| Msa1082470 | Msa1098250 | 0.810368 | 1.193557e-50 | -8.615850e-47 |
| Msa1082470 | Msa1098270 | 0.805048 | 1.610965e-49 | -8.615850e-47 |
| Msa1082470 | Msa1121110 | 0.801348 | 9.392700e-49 | -8.615850e-47 |
| Msa1082470 | Msa1130530 | 0.803668 | 3.122965e-49 | -8.615850e-47 |
| Msa1082470 | Msa1143020 | 0.811668 | 6.238610e-51 | -8.615850e-47 |
| Msa1082470 | Msa1246360 | 0.805782 | 1.130630e-49 | -8.615850e-47 |
| Msa1082470 | Msa1270660 | 0.807700 | 4.447797e-50 | -8.615850e-47 |
| Msa1082470 | Msa1349450 | 0.802706 | 4.939247e-49 | -8.615850e-47 |
| Msa1082470 | Msa1391750 | 0.888273 | 6.831515e-73 | -8.615850e-47 |
| Msa0285330 | Msa1082470 | 0.805566 | 1.254685e-49 | -8.615850e-47 |
| Msa0958030 | Msa1082470 | 0.806273 | 8.912280e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1082470 | MtrunA17_Chr7g0270071 | 96.497 | 571 | 15 | 1 | 1 | 571 | 1 | 566 | 0.0 | 1105 |
| Msa1082470 | MtrunA17_Chr4g0068311 | 38.695 | 429 | 194 | 13 | 144 | 569 | 52 | 414 | 1.50e-60 | 206 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1082470 | AT2G47350.1 | 43.750 | 576 | 217 | 21 | 1 | 564 | 1 | 481 | 4.62e-113 | 345 |
| Msa1082470 | AT1G56460.1 | 41.065 | 582 | 244 | 18 | 1 | 563 | 1 | 502 | 3.70e-88 | 281 |
| Msa1082470 | AT1G56460.2 | 39.145 | 608 | 249 | 18 | 1 | 563 | 1 | 532 | 1.52e-83 | 270 |
| Msa1082470 | AT3G06660.1 | 43.384 | 461 | 186 | 17 | 109 | 564 | 29 | 419 | 2.34e-65 | 219 |
| Msa1082470 | AT1G56460.3 | 38.993 | 536 | 233 | 17 | 1 | 517 | 1 | 461 | 1.06e-60 | 210 |
| Msa1082470 | AT2G47350.2 | 38.344 | 459 | 182 | 19 | 1 | 447 | 1 | 370 | 1.82e-55 | 192 |
Find 155 sgRNAs with CRISPR-Local
Find 265 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCTAGATGTGTTCTTTA+TGG | 0.097216 | 7_2:+82574647 | None:intergenic |
| TTCGAAAAGCTCTCGTTTAT+CGG | 0.231676 | 7_2:-82575383 | Msa1082470:CDS |
| ACTCTCTAGCGTCTCTAATA+TGG | 0.265515 | 7_2:-82574448 | Msa1082470:CDS |
| GATTTCAAAAGGGGCGGATT+TGG | 0.281044 | 7_2:-82574705 | Msa1082470:CDS |
| CTCTGTGATGATTGGATATA+TGG | 0.290761 | 7_2:+82576208 | None:intergenic |
| GTGTTCTTGCTCCTGCTAAT+TGG | 0.295171 | 7_2:-82575624 | Msa1082470:CDS |
| TTTGAATCCCGGTATTTATA+CGG | 0.300042 | 7_2:+82572992 | None:intergenic |
| ACAGAATTACCTGTTGCTTT+TGG | 0.329755 | 7_2:+82575344 | None:intergenic |
| GAATCCTGAGAGTACAAGTT+TGG | 0.340010 | 7_2:-82575530 | Msa1082470:CDS |
| TCTGCATCTAACAGTGCTTC+AGG | 0.354010 | 7_2:-82575418 | Msa1082470:CDS |
| AAACCTGTGCCAGATCTTCT+TGG | 0.361784 | 7_2:+82573793 | None:intergenic |
| TATGAGGATGAAGTGGAATC+AGG | 0.367393 | 7_2:-82574348 | Msa1082470:CDS |
| GCCGTGGCCTGCGCGATGGT+TGG | 0.370228 | 7_2:+82575869 | None:intergenic |
| CCTTCCACGGAAGGCCTTTG+AGG | 0.388383 | 7_2:+82574727 | None:intergenic |
| AATCCTGAGAGTACAAGTTT+GGG | 0.390497 | 7_2:-82575529 | Msa1082470:CDS |
| GGGCAGCTTCAAGATGGATT+GGG | 0.397967 | 7_2:-82575508 | Msa1082470:CDS |
| GACTCTTACAACGCGTCAAC+GGG | 0.398062 | 7_2:-82574241 | Msa1082470:CDS |
| AAAGGGGCGGATTTGGTGTC+GGG | 0.399013 | 7_2:-82574698 | Msa1082470:CDS |
| CGTCAACGGGCCCTTCAATC+AGG | 0.406481 | 7_2:-82574228 | Msa1082470:CDS |
| TGGCAGTTTGTGGCGGTTGA+CGG | 0.410681 | 7_2:+82576318 | None:intergenic |
| ATGGATTGGGGAGTGAGAAC+AGG | 0.411464 | 7_2:-82575495 | Msa1082470:CDS |
| TTAGGATCTACCCGGTTTGA+TGG | 0.419286 | 7_2:-82575922 | Msa1082470:CDS |
| AAGCATCTTTGCCTGATTGA+AGG | 0.423912 | 7_2:+82574217 | None:intergenic |
| TTCCGTGGAAGGATTTCAAA+AGG | 0.429035 | 7_2:-82574716 | Msa1082470:CDS |
| TTGTGTTACTCAACCATCTT+CGG | 0.429757 | 7_2:-82575689 | Msa1082470:CDS |
| AAAGAAGCGCCAAGAAGATC+TGG | 0.434910 | 7_2:-82573802 | Msa1082470:CDS |
| GGCTTGGTGTTTATAATCGC+AGG | 0.439814 | 7_2:+82573586 | None:intergenic |
| ATCATCATCAACACCTCCTT+CGG | 0.442031 | 7_2:-82575800 | Msa1082470:CDS |
| TCCATCCAGTACACGTCGCT+TGG | 0.442077 | 7_2:+82574581 | None:intergenic |
| AGTACCCAAGCGACGTGTAC+TGG | 0.443147 | 7_2:-82574586 | Msa1082470:CDS |
| CGACCTTCAGGATCAGGAAT+AGG | 0.445884 | 7_2:+82575835 | None:intergenic |
| TCAGGAATAGGCTGTGAATC+AGG | 0.447013 | 7_2:+82575847 | None:intergenic |
| AGCGGCGCGATTAATAATAT+AGG | 0.449054 | 7_2:-82576164 | Msa1082470:five_prime_UTR |
| CCACCTCGCGAGATGTGTGC+TGG | 0.451336 | 7_2:-82573031 | Msa1082470:CDS |
| AAATCACGACCTTCAGGATC+AGG | 0.453077 | 7_2:+82575829 | None:intergenic |
| CCTGGACAGCCTTGTAGCAT+TGG | 0.453944 | 7_2:+82572945 | None:intergenic |
| ACTCTCTTGCTCTTACGAAC+AGG | 0.456564 | 7_2:+82574606 | None:intergenic |
| CATTGCTGATACCATCAAAC+CGG | 0.457258 | 7_2:+82575911 | None:intergenic |
| GCTGTCCAGGCGAAGACTAC+TGG | 0.457917 | 7_2:-82572932 | Msa1082470:CDS |
| AGATATGTGATAGGTCCTAC+TGG | 0.459612 | 7_2:-82573643 | Msa1082470:CDS |
| GTACAAATCCGTATAAATAC+CGG | 0.462269 | 7_2:-82573000 | Msa1082470:CDS |
| CTTGCTCCTGCTAATTGGAA+AGG | 0.463533 | 7_2:-82575619 | Msa1082470:CDS |
| CTAGAACCTTTCCAATTAGC+AGG | 0.466538 | 7_2:+82575613 | None:intergenic |
| GGTGTCAAACTGAACTCAAC+TGG | 0.467231 | 7_2:-82576364 | Msa1082470:five_prime_UTR |
| CGCAGGGATCCCCATTTCCT+CGG | 0.468162 | 7_2:+82573603 | None:intergenic |
| TACTCACTTCTAGGTGGGGC+AGG | 0.469584 | 7_2:+82574150 | None:intergenic |
| GGGGCAGCTTCAAGATGGAT+TGG | 0.471719 | 7_2:-82575509 | Msa1082470:CDS |
| TTATAAACACCAAGCCCATC+AGG | 0.472848 | 7_2:-82573579 | Msa1082470:intron |
| GAAGTGGAATCAGGGTCTGC+TGG | 0.477090 | 7_2:-82574339 | Msa1082470:CDS |
| GGAATCTGTTGATGTATTGA+TGG | 0.477592 | 7_2:-82574280 | Msa1082470:CDS |
| TGAGGAATCTCTGTGATGAT+TGG | 0.482112 | 7_2:+82576200 | None:intergenic |
| CCATCCAGTACACGTCGCTT+GGG | 0.482402 | 7_2:+82574582 | None:intergenic |
| GAGTGAGAACAGGGTTAAGA+AGG | 0.483255 | 7_2:-82575485 | Msa1082470:CDS |
| AAAAGGGGCGGATTTGGTGT+CGG | 0.491074 | 7_2:-82574699 | Msa1082470:CDS |
| TTTCACCAGTAGTCTTCGCC+TGG | 0.491636 | 7_2:+82572927 | None:intergenic |
| TCTAACAGTGCTTCAGGAAG+CGG | 0.493879 | 7_2:-82575412 | Msa1082470:CDS |
| TGACTCTTACAACGCGTCAA+CGG | 0.495079 | 7_2:-82574242 | Msa1082470:CDS |
| CCAATGCTACAAGGCTGTCC+AGG | 0.496964 | 7_2:-82572945 | Msa1082470:CDS |
| GCAATGCTGTGAGGAGGAAG+AGG | 0.500162 | 7_2:-82575894 | Msa1082470:CDS |
| AGCATCTTTGCCTGATTGAA+GGG | 0.500386 | 7_2:+82574218 | None:intergenic |
| TCATCAAGGTCAGGCAAAGA+TGG | 0.509231 | 7_2:-82574414 | Msa1082470:CDS |
| GCTTGAAGATACAGATTATG+AGG | 0.510025 | 7_2:-82574364 | Msa1082470:CDS |
| TTATACGGATTTGTACATGA+TGG | 0.510873 | 7_2:+82573007 | None:intergenic |
| GACAGCAGCTCCTCTTCTGT+AGG | 0.513010 | 7_2:+82574050 | None:intergenic |
| AATGATGGTTATGATAATAC+TGG | 0.513052 | 7_2:-82575742 | Msa1082470:CDS |
| AAATTTGAAGAAAATTATGA+AGG | 0.513060 | 7_2:+82576276 | None:intergenic |
| AGCTTGATACCTGATGGGCT+TGG | 0.515448 | 7_2:+82573570 | None:intergenic |
| ATGTATTGATGGACACTAAG+AGG | 0.516625 | 7_2:-82574269 | Msa1082470:CDS |
| TGCCCCAAACTTGTACTCTC+AGG | 0.517224 | 7_2:+82575526 | None:intergenic |
| CCTCAAAGGCCTTCCGTGGA+AGG | 0.517260 | 7_2:-82574727 | Msa1082470:CDS |
| GAGACTGCAAAGAGGAACCT+TGG | 0.517832 | 7_2:+82572967 | None:intergenic |
| TATGGTGCAACGCAATTATG+TGG | 0.520643 | 7_2:+82576226 | None:intergenic |
| CCGCTTTAAGAGCATAATTG+AGG | 0.520945 | 7_2:+82576182 | None:intergenic |
| TTATCAGCAGCTTCCTCCGA+AGG | 0.522047 | 7_2:+82575784 | None:intergenic |
| TTTACGCCTAATGGCAGCCT+CGG | 0.523022 | 7_2:+82574019 | None:intergenic |
| CTCCGTCCACTAGCCGAAGA+TGG | 0.525607 | 7_2:+82575676 | None:intergenic |
| AATACCATCAGATATGTGAT+AGG | 0.526976 | 7_2:-82573652 | Msa1082470:CDS |
| GCAAGTTGAGAAGGCTGCTA+GGG | 0.527308 | 7_2:-82573994 | Msa1082470:CDS |
| GCGTAAAATGCAAGTTGAGA+AGG | 0.527598 | 7_2:-82574003 | Msa1082470:CDS |
| AGTTTGGGGCAGCTTCAAGA+TGG | 0.531243 | 7_2:-82575514 | Msa1082470:CDS |
| TCCGTGGAAGGATTTCAAAA+GGG | 0.531352 | 7_2:-82574715 | Msa1082470:CDS |
| GCTAAGAAGCGAGGCCTCAA+AGG | 0.533528 | 7_2:-82574741 | Msa1082470:CDS |
| AATGCTGCCTCATCAAGGTC+AGG | 0.537706 | 7_2:-82574423 | Msa1082470:CDS |
| CAATATACTCACTTCTAGGT+GGG | 0.538644 | 7_2:+82574145 | None:intergenic |
| AGGCCTCGCTTCTTAGCAGA+CGG | 0.539987 | 7_2:+82574747 | None:intergenic |
| AAAAGAGAAGCCTACAGAAG+AGG | 0.541543 | 7_2:-82574060 | Msa1082470:CDS |
| GCAGGGATCCCCATTTCCTC+GGG | 0.542465 | 7_2:+82573604 | None:intergenic |
| GCACACATCTCGCGAGGTGG+AGG | 0.545738 | 7_2:+82573034 | None:intergenic |
| TACAGATTATGAGGATGAAG+TGG | 0.546851 | 7_2:-82574355 | Msa1082470:CDS |
| TGGATTGGGGAGTGAGAACA+GGG | 0.547165 | 7_2:-82575494 | Msa1082470:CDS |
| TACTTGGTCAAGATTCTAGC+AGG | 0.548008 | 7_2:-82573845 | Msa1082470:CDS |
| TTGCAGTCTCCAATGCTACA+AGG | 0.548799 | 7_2:-82572954 | Msa1082470:CDS |
| GGGGCAGGAGGTAATCCATT+GGG | 0.549140 | 7_2:+82574165 | None:intergenic |
| AATAATAGACGGAGCAGTGA+AGG | 0.554175 | 7_2:-82575646 | Msa1082470:CDS |
| AACTGGTCGGAAAACAGAAA+CGG | 0.556431 | 7_2:-82576347 | Msa1082470:five_prime_UTR |
| TGACAAATGACAACATCAGC+TGG | 0.558226 | 7_2:+82572901 | None:intergenic |
| AAGAAGGTTAAACTCAAGGT+TGG | 0.559367 | 7_2:-82575469 | Msa1082470:CDS |
| GGGAAGGAAGAGACGTCGAT+GGG | 0.560352 | 7_2:-82574678 | Msa1082470:CDS |
| TGCAAGTTGAGAAGGCTGCT+AGG | 0.561618 | 7_2:-82573995 | Msa1082470:CDS |
| GGTTAAGAAGGTTAAACTCA+AGG | 0.564843 | 7_2:-82575473 | Msa1082470:CDS |
| AGTTTAATCGAGTTTCCCAA+TGG | 0.564889 | 7_2:-82574180 | Msa1082470:CDS |
| AAGGTTAAACTCAAGGTTGG+TGG | 0.565439 | 7_2:-82575466 | Msa1082470:CDS |
| ATGCTGATATATTTGGTGGA+AGG | 0.565650 | 7_2:-82575552 | Msa1082470:CDS |
| AGAGGAGCCAACCATCGCGC+AGG | 0.566100 | 7_2:-82575876 | Msa1082470:CDS |
| GGGCGGATTTGGTGTCGGGA+AGG | 0.568133 | 7_2:-82574694 | Msa1082470:CDS |
| AAGAACACATCTAGCAAGCA+AGG | 0.568724 | 7_2:-82574642 | Msa1082470:CDS |
| GTTTCTAGTGATGAGAATGA+TGG | 0.569956 | 7_2:-82575757 | Msa1082470:CDS |
| ATCTTTGCCTGACCTTGATG+AGG | 0.571415 | 7_2:+82574416 | None:intergenic |
| ATGAGGATGAAGTGGAATCA+GGG | 0.574164 | 7_2:-82574347 | Msa1082470:CDS |
| AGAAAACCGAGGCTGCCATT+AGG | 0.578455 | 7_2:-82574025 | Msa1082470:CDS |
| ACTCAACCATCTTCGGCTAG+TGG | 0.578820 | 7_2:-82575682 | Msa1082470:CDS |
| AGGATAGCTTGATACCTGAT+GGG | 0.578873 | 7_2:+82573565 | None:intergenic |
| TGGACAATGCTGCCTCATCA+AGG | 0.579403 | 7_2:-82574428 | Msa1082470:CDS |
| CCCAAGCGACGTGTACTGGA+TGG | 0.579720 | 7_2:-82574582 | Msa1082470:CDS |
| GGCAGCTTCAAGATGGATTG+GGG | 0.581310 | 7_2:-82575507 | Msa1082470:CDS |
| CCGTGGAAGGATTTCAAAAG+GGG | 0.581364 | 7_2:-82574714 | Msa1082470:CDS |
| AAAAGCTCTCGTTTATCGGA+CGG | 0.583457 | 7_2:-82575379 | Msa1082470:CDS |
| CGGGAAGGAAGAGACGTCGA+TGG | 0.584552 | 7_2:-82574679 | Msa1082470:CDS |
| ATAGGCTGTGAATCAGGCCG+TGG | 0.585794 | 7_2:+82575853 | None:intergenic |
| ATGATGCTGATGATGAGATT+CGG | 0.588715 | 7_2:-82574548 | Msa1082470:CDS |
| AGGACCTATCACATATCTGA+TGG | 0.590688 | 7_2:+82573648 | None:intergenic |
| GAGATGAAGAAGAATCAAGC+AGG | 0.591792 | 7_2:-82574482 | Msa1082470:CDS |
| AGGGTCTGCTGGAGAGCAAG+AGG | 0.591977 | 7_2:-82574328 | Msa1082470:CDS |
| AACCATCTTCGGCTAGTGGA+CGG | 0.593376 | 7_2:-82575678 | Msa1082470:CDS |
| TGGGGCAGGAGGTAATCCAT+TGG | 0.599381 | 7_2:+82574164 | None:intergenic |
| CAGCCTATTCCTGATCCTGA+AGG | 0.600249 | 7_2:-82575838 | Msa1082470:CDS |
| CCTCAATTATGCTCTTAAAG+CGG | 0.602289 | 7_2:-82576182 | Msa1082470:five_prime_UTR |
| TGGAAGGATTTCAAAAGGGG+CGG | 0.606104 | 7_2:-82574711 | Msa1082470:CDS |
| TGTATTGATGGACACTAAGA+GGG | 0.606879 | 7_2:-82574268 | Msa1082470:CDS |
| GCGCCAAGAAGATCTGGCAC+AGG | 0.611439 | 7_2:-82573796 | Msa1082470:intron |
| GAAGGCTGCTAGGGAATCTG+AGG | 0.612819 | 7_2:-82573985 | Msa1082470:intron |
| TCAGCAGCTTCCTCCGAAGG+AGG | 0.613860 | 7_2:+82575787 | None:intergenic |
| TACAAATCCGTATAAATACC+GGG | 0.613891 | 7_2:-82572999 | Msa1082470:CDS |
| ATCATCAACACCTCCTTCGG+AGG | 0.618324 | 7_2:-82575797 | Msa1082470:CDS |
| GGAGTAGTTTAAATAATAGA+CGG | 0.619459 | 7_2:-82575657 | Msa1082470:CDS |
| TGGAAGATTTAGGATCTACC+CGG | 0.621580 | 7_2:-82575930 | Msa1082470:CDS |
| GAGGCCTCAAAGGCCTTCCG+TGG | 0.622312 | 7_2:-82574731 | Msa1082470:CDS |
| AATATACTCACTTCTAGGTG+GGG | 0.622996 | 7_2:+82574146 | None:intergenic |
| GAAGGAGGTGTTGATGATGA+TGG | 0.623293 | 7_2:+82575802 | None:intergenic |
| GCTTGGTGTTTATAATCGCA+GGG | 0.625642 | 7_2:+82573587 | None:intergenic |
| ACAATATACTCACTTCTAGG+TGG | 0.626612 | 7_2:+82574144 | None:intergenic |
| GATATGTGATAGGTCCTACT+GGG | 0.638043 | 7_2:-82573642 | Msa1082470:CDS |
| TCACTTCTAGGTGGGGCAGG+AGG | 0.639183 | 7_2:+82574153 | None:intergenic |
| TCAAACTGAACTCAACTGGT+CGG | 0.642265 | 7_2:-82576360 | Msa1082470:five_prime_UTR |
| GATAGGTCCTACTGGGACAG+TGG | 0.650564 | 7_2:-82573635 | Msa1082470:CDS |
| TCTCCGTCTGCTAAGAAGCG+AGG | 0.650811 | 7_2:-82574750 | Msa1082470:CDS |
| AAAGTCACCACTGTCCCAGT+AGG | 0.661585 | 7_2:+82573628 | None:intergenic |
| ATTGCTGATACCATCAAACC+GGG | 0.666876 | 7_2:+82575912 | None:intergenic |
| GTATCAGCAATGCTGTGAGG+AGG | 0.670655 | 7_2:-82575900 | Msa1082470:CDS |
| GGAAGGAAGAGACGTCGATG+GGG | 0.684156 | 7_2:-82574677 | Msa1082470:CDS |
| ATCCTGAGAGTACAAGTTTG+GGG | 0.689240 | 7_2:-82575528 | Msa1082470:CDS |
| TAGCATTGGAGACTGCAAAG+AGG | 0.704536 | 7_2:+82572959 | None:intergenic |
| AAGATGGTTGAGTAACACAA+TGG | 0.709439 | 7_2:+82575692 | None:intergenic |
| GCTGCTGTCAAAGAAAACCG+AGG | 0.714689 | 7_2:-82574036 | Msa1082470:CDS |
| ATGGTATCAGCAATGCTGTG+AGG | 0.773928 | 7_2:-82575903 | Msa1082470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTGAAGAAAATTATGA+AGG | + | chr7_2:82573021-82573040 | None:intergenic | 15.0% |
| !!! | AGAATTTGATTTTTATGTAA+AGG | - | chr7_2:82573303-82573322 | Msa1082470:intron | 15.0% |
| !! | ATATATCATTTATGGTTATT+CGG | - | chr7_2:82573993-82574012 | Msa1082470:CDS | 15.0% |
| !!! | GTATTTAGATTTTACTTTTA+TGG | - | chr7_2:82574392-82574411 | Msa1082470:CDS | 15.0% |
| !! | TTATAAGTTAAAAAGGATAA+AGG | + | chr7_2:82574464-82574483 | None:intergenic | 15.0% |
| !!! | GCAAAAAAATAAGTTTTTGA+TGG | - | chr7_2:82573344-82573363 | Msa1082470:intron | 20.0% |
| !! | TATCGCTTATATATCATTTA+TGG | - | chr7_2:82573985-82574004 | Msa1082470:intron | 20.0% |
| !! | AAATCTATGATAACTTATCA+AGG | + | chr7_2:82574084-82574103 | None:intergenic | 20.0% |
| !!! | CTTTTATGGAAAAATATTTG+CGG | - | chr7_2:82574406-82574425 | Msa1082470:CDS | 20.0% |
| !!! | ATGGGTTTTATAAGTTAAAA+AGG | + | chr7_2:82574471-82574490 | None:intergenic | 20.0% |
| !!! | TCCATTTAAATTCATTTTCT+AGG | - | chr7_2:82575408-82575427 | Msa1082470:CDS | 20.0% |
| !! | AATAATTGTTGTGAAAATCA+TGG | + | chr7_2:82575910-82575929 | None:intergenic | 20.0% |
| !!! | ATGATTTTCACAACAATTAT+TGG | - | chr7_2:82575909-82575928 | Msa1082470:CDS | 20.0% |
| !!! | TGATTTTCACAACAATTATT+GGG | - | chr7_2:82575910-82575929 | Msa1082470:CDS | 20.0% |
| !! | TTTCGCAAATAAAATAAGAA+GGG | - | chr7_2:82576026-82576045 | Msa1082470:five_prime_UTR | 20.0% |
| ! | AAAATTATGAAGGAAAAACC+TGG | + | chr7_2:82573011-82573030 | None:intergenic | 25.0% |
| !!! | TTTTTTTCTTTCATTAGCAG+CGG | - | chr7_2:82573176-82573195 | Msa1082470:intron | 25.0% |
| !! | AAGTTTTTGATGGAAGATTT+AGG | - | chr7_2:82573354-82573373 | Msa1082470:intron | 25.0% |
| ! | AATGATGGTTATGATAATAC+TGG | - | chr7_2:82573552-82573571 | Msa1082470:intron | 25.0% |
| !! | GAGATTAAATTCTTTTCTCT+TGG | + | chr7_2:82573580-82573599 | None:intergenic | 25.0% |
| ! | GGAGTAGTTTAAATAATAGA+CGG | - | chr7_2:82573637-82573656 | Msa1082470:CDS | 25.0% |
| ! | TCGAAAAATGCTGATATATT+TGG | - | chr7_2:82573735-82573754 | Msa1082470:intron | 25.0% |
| ! | AAAAATGCTGATATATTTGG+TGG | - | chr7_2:82573738-82573757 | Msa1082470:intron | 25.0% |
| ! | TTTAGGTGAAAACACTTAAA+CGG | + | chr7_2:82574037-82574056 | None:intergenic | 25.0% |
| ! | ATAAGAAAAAGAAAAAGCAG+AGG | - | chr7_2:82574989-82575008 | Msa1082470:intron | 25.0% |
| !! | TTTTGTTCTCTCTAAATTAC+AGG | - | chr7_2:82575337-82575356 | Msa1082470:intron | 25.0% |
| ! | GCCTAGAAAATGAATTTAAA+TGG | + | chr7_2:82575412-82575431 | None:intergenic | 25.0% |
| ! | TTTATAAAACTGTTCTTTGC+AGG | - | chr7_2:82575587-82575606 | Msa1082470:CDS | 25.0% |
| ! | GTTTCGCAAATAAAATAAGA+AGG | - | chr7_2:82576025-82576044 | Msa1082470:five_prime_UTR | 25.0% |
| ! | CAAATAAAATAAGAAGGGAA+AGG | - | chr7_2:82576031-82576050 | Msa1082470:five_prime_UTR | 25.0% |
| !!! | GAAAAACCTGGAGAATTTTT+TGG | + | chr7_2:82572999-82573018 | None:intergenic | 30.0% |
| CACCTAAAAGTTTACACTTT+AGG | - | chr7_2:82574049-82574068 | Msa1082470:CDS | 30.0% | |
| ! | CTCCTAAAGTGTAAACTTTT+AGG | + | chr7_2:82574054-82574073 | None:intergenic | 30.0% |
| ! | AGTTTACACTTTAGGAGATT+TGG | - | chr7_2:82574057-82574076 | Msa1082470:CDS | 30.0% |
| TAAGCAACACTATATAGAGT+GGG | - | chr7_2:82574126-82574145 | Msa1082470:intron | 30.0% | |
| TTTGTTTCACGAGAATATTG+AGG | - | chr7_2:82574334-82574353 | Msa1082470:CDS | 30.0% | |
| TTTGATCAACACGATCAAAT+GGG | + | chr7_2:82574489-82574508 | None:intergenic | 30.0% | |
| ATTTGATCAACACGATCAAA+TGG | + | chr7_2:82574490-82574509 | None:intergenic | 30.0% | |
| AGTACAATATACTCACTTCT+AGG | + | chr7_2:82575156-82575175 | None:intergenic | 30.0% | |
| AAATCCAACGAACATAATGA+GGG | + | chr7_2:82575372-82575391 | None:intergenic | 30.0% | |
| AAAATCCAACGAACATAATG+AGG | + | chr7_2:82575373-82575392 | None:intergenic | 30.0% | |
| GAAGCTATCAGAAAAATACT+TGG | - | chr7_2:82575433-82575452 | Msa1082470:CDS | 30.0% | |
| AATACCATCAGATATGTGAT+AGG | - | chr7_2:82575642-82575661 | Msa1082470:CDS | 30.0% | |
| ACATACATAAACAAGTTACC+AGG | + | chr7_2:82575787-82575806 | None:intergenic | 30.0% | |
| !! | GGTAACTTGTTTATGTATGT+TGG | - | chr7_2:82575787-82575806 | Msa1082470:CDS | 30.0% |
| TTTATGTATGTTGGCAAACT+TGG | - | chr7_2:82575796-82575815 | Msa1082470:CDS | 30.0% | |
| GCAAACTTGGAGAAAAAAAA+TGG | - | chr7_2:82575809-82575828 | Msa1082470:CDS | 30.0% | |
| ATGGAAACAACTAAAACCAA+AGG | + | chr7_2:82575891-82575910 | None:intergenic | 30.0% | |
| ACATAACAAAAAGAATCCTC+AGG | + | chr7_2:82576007-82576026 | None:intergenic | 30.0% | |
| ATCATAATCAGTCTTCATCA+TGG | + | chr7_2:82576145-82576164 | None:intergenic | 30.0% | |
| TTATACGGATTTGTACATGA+TGG | + | chr7_2:82576290-82576309 | None:intergenic | 30.0% | |
| GTACAAATCCGTATAAATAC+CGG | - | chr7_2:82576294-82576313 | Msa1082470:five_prime_UTR | 30.0% | |
| TACAAATCCGTATAAATACC+GGG | - | chr7_2:82576295-82576314 | Msa1082470:five_prime_UTR | 30.0% | |
| TTTGAATCCCGGTATTTATA+CGG | + | chr7_2:82576305-82576324 | None:intergenic | 30.0% | |
| !!! | AATTTTTTGGCAGTTTGTGG+CGG | + | chr7_2:82572986-82573005 | None:intergenic | 35.0% |
| !!! | GAGAATTTTTTGGCAGTTTG+TGG | + | chr7_2:82572989-82573008 | None:intergenic | 35.0% |
| AAACTGCCAAAAAATTCTCC+AGG | - | chr7_2:82572990-82573009 | Msa1082470:CDS | 35.0% | |
| CTCTGTGATGATTGGATATA+TGG | + | chr7_2:82573089-82573108 | None:intergenic | 35.0% | |
| CCTCAATTATGCTCTTAAAG+CGG | - | chr7_2:82573112-82573131 | Msa1082470:intron | 35.0% | |
| !! | GTTTCTAGTGATGAGAATGA+TGG | - | chr7_2:82573537-82573556 | Msa1082470:intron | 35.0% |
| AAGATGGTTGAGTAACACAA+TGG | + | chr7_2:82573605-82573624 | None:intergenic | 35.0% | |
| ! | TTGTGTTACTCAACCATCTT+CGG | - | chr7_2:82573605-82573624 | Msa1082470:CDS | 35.0% |
| ! | ATGCTGATATATTTGGTGGA+AGG | - | chr7_2:82573742-82573761 | Msa1082470:intron | 35.0% |
| ! | AATCCTGAGAGTACAAGTTT+GGG | - | chr7_2:82573765-82573784 | Msa1082470:intron | 35.0% |
| GGTTAAGAAGGTTAAACTCA+AGG | - | chr7_2:82573821-82573840 | Msa1082470:CDS | 35.0% | |
| AAGAAGGTTAAACTCAAGGT+TGG | - | chr7_2:82573825-82573844 | Msa1082470:CDS | 35.0% | |
| TTCGAAAAGCTCTCGTTTAT+CGG | - | chr7_2:82573911-82573930 | Msa1082470:intron | 35.0% | |
| !!! | ACAGAATTACCTGTTGCTTT+TGG | + | chr7_2:82573953-82573972 | None:intergenic | 35.0% |
| GTAAGCAACACTATATAGAG+TGG | - | chr7_2:82574125-82574144 | Msa1082470:intron | 35.0% | |
| CAAAAGTTATTTGGGCTTGA+AGG | + | chr7_2:82574170-82574189 | None:intergenic | 35.0% | |
| CCCTCATGCAAAAGTTATTT+GGG | + | chr7_2:82574178-82574197 | None:intergenic | 35.0% | |
| ! | CCCAAATAACTTTTGCATGA+GGG | - | chr7_2:82574175-82574194 | Msa1082470:CDS | 35.0% |
| ! | CCAAATAACTTTTGCATGAG+GGG | - | chr7_2:82574176-82574195 | Msa1082470:CDS | 35.0% |
| ! | CAAATAACTTTTGCATGAGG+GGG | - | chr7_2:82574177-82574196 | Msa1082470:CDS | 35.0% |
| ! | AAATAACTTTTGCATGAGGG+GGG | - | chr7_2:82574178-82574197 | Msa1082470:CDS | 35.0% |
| TCGATGCATATTATGGACAT+TGG | - | chr7_2:82574247-82574266 | Msa1082470:CDS | 35.0% | |
| TCAAAACGCCAAATATCGTA+CGG | + | chr7_2:82574273-82574292 | None:intergenic | 35.0% | |
| CTTGCTAGATGTGTTCTTTA+TGG | + | chr7_2:82574650-82574669 | None:intergenic | 35.0% | |
| ! | ATGATGCTGATGATGAGATT+CGG | - | chr7_2:82574746-82574765 | Msa1082470:CDS | 35.0% |
| GCTTGAAGATACAGATTATG+AGG | - | chr7_2:82574930-82574949 | Msa1082470:intron | 35.0% | |
| TACAGATTATGAGGATGAAG+TGG | - | chr7_2:82574939-82574958 | Msa1082470:intron | 35.0% | |
| GAAAAAGAAAAAGCAGAGGA+AGG | - | chr7_2:82574993-82575012 | Msa1082470:intron | 35.0% | |
| GGAATCTGTTGATGTATTGA+TGG | - | chr7_2:82575014-82575033 | Msa1082470:intron | 35.0% | |
| ! | ATGTATTGATGGACACTAAG+AGG | - | chr7_2:82575025-82575044 | Msa1082470:intron | 35.0% |
| ! | TGTATTGATGGACACTAAGA+GGG | - | chr7_2:82575026-82575045 | Msa1082470:intron | 35.0% |
| AGTTTAATCGAGTTTCCCAA+TGG | - | chr7_2:82575114-82575133 | Msa1082470:intron | 35.0% | |
| AATATACTCACTTCTAGGTG+GGG | + | chr7_2:82575151-82575170 | None:intergenic | 35.0% | |
| CAATATACTCACTTCTAGGT+GGG | + | chr7_2:82575152-82575171 | None:intergenic | 35.0% | |
| ACAATATACTCACTTCTAGG+TGG | + | chr7_2:82575153-82575172 | None:intergenic | 35.0% | |
| ! | AACTTGCATTTTACGCCTAA+TGG | + | chr7_2:82575287-82575306 | None:intergenic | 35.0% |
| AATCCAACGAACATAATGAG+GGG | + | chr7_2:82575371-82575390 | None:intergenic | 35.0% | |
| ! | ATGTTCGTTGGATTTTACAC+TGG | - | chr7_2:82575377-82575396 | Msa1082470:CDS | 35.0% |
| TACCAGGAAGATAGTTTAAC+AGG | + | chr7_2:82575771-82575790 | None:intergenic | 35.0% | |
| CGCATTGCTAATTTGATGTA+TGG | - | chr7_2:82575963-82575982 | Msa1082470:five_prime_UTR | 35.0% | |
| ! | ACTCATGTTGCAAGTTTGTT+TGG | - | chr7_2:82576177-82576196 | Msa1082470:five_prime_UTR | 35.0% |
| ACTGATATCATTAGCAGAGA+AGG | + | chr7_2:82576222-82576241 | None:intergenic | 35.0% | |
| TCAAACTGAACTCAACTGGT+CGG | - | chr7_2:82572934-82572953 | Msa1082470:CDS | 40.0% | |
| AACTGGTCGGAAAACAGAAA+CGG | - | chr7_2:82572947-82572966 | Msa1082470:CDS | 40.0% | |
| TATGGTGCAACGCAATTATG+TGG | + | chr7_2:82573071-82573090 | None:intergenic | 40.0% | |
| TGAGGAATCTCTGTGATGAT+TGG | + | chr7_2:82573097-82573116 | None:intergenic | 40.0% | |
| !! | CCGCTTTAAGAGCATAATTG+AGG | + | chr7_2:82573115-82573134 | None:intergenic | 40.0% |
| AGCGGCGCGATTAATAATAT+AGG | - | chr7_2:82573130-82573149 | Msa1082470:intron | 40.0% | |
| ! | TGGAAGATTTAGGATCTACC+CGG | - | chr7_2:82573364-82573383 | Msa1082470:intron | 40.0% |
| ATTGCTGATACCATCAAACC+GGG | + | chr7_2:82573385-82573404 | None:intergenic | 40.0% | |
| CATTGCTGATACCATCAAAC+CGG | + | chr7_2:82573386-82573405 | None:intergenic | 40.0% | |
| ATCATCATCAACACCTCCTT+CGG | - | chr7_2:82573494-82573513 | Msa1082470:intron | 40.0% | |
| AATAATAGACGGAGCAGTGA+AGG | - | chr7_2:82573648-82573667 | Msa1082470:CDS | 40.0% | |
| CTAGAACCTTTCCAATTAGC+AGG | + | chr7_2:82573684-82573703 | None:intergenic | 40.0% | |
| ! | GAATCCTGAGAGTACAAGTT+TGG | - | chr7_2:82573764-82573783 | Msa1082470:intron | 40.0% |
| ! | ATCCTGAGAGTACAAGTTTG+GGG | - | chr7_2:82573766-82573785 | Msa1082470:intron | 40.0% |
| AAGGTTAAACTCAAGGTTGG+TGG | - | chr7_2:82573828-82573847 | Msa1082470:CDS | 40.0% | |
| AAAAGCTCTCGTTTATCGGA+CGG | - | chr7_2:82573915-82573934 | Msa1082470:intron | 40.0% | |
| GAAGGATACGATCAATGTTC+AGG | + | chr7_2:82574152-82574171 | None:intergenic | 40.0% | |
| ! | GCCCAAATAACTTTTGCATG+AGG | - | chr7_2:82574174-82574193 | Msa1082470:CDS | 40.0% |
| CCCCTCATGCAAAAGTTATT+TGG | + | chr7_2:82574179-82574198 | None:intergenic | 40.0% | |
| ! | CAGTTGGCTAAACTTTTAGG+CGG | + | chr7_2:82574227-82574246 | None:intergenic | 40.0% |
| ! | CGACAGTTGGCTAAACTTTT+AGG | + | chr7_2:82574230-82574249 | None:intergenic | 40.0% |
| ! | CCATAATATGCATCGACAGT+TGG | + | chr7_2:82574243-82574262 | None:intergenic | 40.0% |
| CCAACTGTCGATGCATATTA+TGG | - | chr7_2:82574240-82574259 | Msa1082470:CDS | 40.0% | |
| ATGTGTCTGCAAGCATTCTA+GGG | - | chr7_2:82574370-82574389 | Msa1082470:CDS | 40.0% | |
| !!! | TTTTGAAATCCTTCCACGGA+AGG | + | chr7_2:82574579-82574598 | None:intergenic | 40.0% |
| TTCCGTGGAAGGATTTCAAA+AGG | - | chr7_2:82574578-82574597 | Msa1082470:CDS | 40.0% | |
| TCCGTGGAAGGATTTCAAAA+GGG | - | chr7_2:82574579-82574598 | Msa1082470:CDS | 40.0% | |
| AAGAACACATCTAGCAAGCA+AGG | - | chr7_2:82574652-82574671 | Msa1082470:CDS | 40.0% | |
| GAGATGAAGAAGAATCAAGC+AGG | - | chr7_2:82574812-82574831 | Msa1082470:intron | 40.0% | |
| ACTCTCTAGCGTCTCTAATA+TGG | - | chr7_2:82574846-82574865 | Msa1082470:intron | 40.0% | |
| TATGAGGATGAAGTGGAATC+AGG | - | chr7_2:82574946-82574965 | Msa1082470:intron | 40.0% | |
| ATGAGGATGAAGTGGAATCA+GGG | - | chr7_2:82574947-82574966 | Msa1082470:intron | 40.0% | |
| AGCATCTTTGCCTGATTGAA+GGG | + | chr7_2:82575079-82575098 | None:intergenic | 40.0% | |
| AAGCATCTTTGCCTGATTGA+AGG | + | chr7_2:82575080-82575099 | None:intergenic | 40.0% | |
| AAAAGAGAAGCCTACAGAAG+AGG | - | chr7_2:82575234-82575253 | Msa1082470:intron | 40.0% | |
| ! | GCGTAAAATGCAAGTTGAGA+AGG | - | chr7_2:82575291-82575310 | Msa1082470:intron | 40.0% |
| ATCCAACGAACATAATGAGG+GGG | + | chr7_2:82575370-82575389 | None:intergenic | 40.0% | |
| TACTTGGTCAAGATTCTAGC+AGG | - | chr7_2:82575449-82575468 | Msa1082470:CDS | 40.0% | |
| AAACTGTTCTTTGCAGGAGA+AGG | - | chr7_2:82575593-82575612 | Msa1082470:CDS | 40.0% | |
| ! | TGATGCATGCTTTTCTGCTT+CGG | + | chr7_2:82575622-82575641 | None:intergenic | 40.0% |
| AGGACCTATCACATATCTGA+TGG | + | chr7_2:82575649-82575668 | None:intergenic | 40.0% | |
| AGATATGTGATAGGTCCTAC+TGG | - | chr7_2:82575651-82575670 | Msa1082470:CDS | 40.0% | |
| GATATGTGATAGGTCCTACT+GGG | - | chr7_2:82575652-82575671 | Msa1082470:CDS | 40.0% | |
| !! | GCTTGGTGTTTATAATCGCA+GGG | + | chr7_2:82575710-82575729 | None:intergenic | 40.0% |
| TTATAAACACCAAGCCCATC+AGG | - | chr7_2:82575715-82575734 | Msa1082470:CDS | 40.0% | |
| AGGATAGCTTGATACCTGAT+GGG | + | chr7_2:82575732-82575751 | None:intergenic | 40.0% | |
| TAGGATAGCTTGATACCTGA+TGG | + | chr7_2:82575733-82575752 | None:intergenic | 40.0% | |
| CAGGTCAGATGCATCAAATT+AGG | + | chr7_2:82575752-82575771 | None:intergenic | 40.0% | |
| GACCTGTTAAACTATCTTCC+TGG | - | chr7_2:82575766-82575785 | Msa1082470:CDS | 40.0% | |
| !! | TTAAAGCAAAGGCACTCACT+CGG | + | chr7_2:82576104-82576123 | None:intergenic | 40.0% |
| CGAGGAAACAGTTAAAGCAA+AGG | + | chr7_2:82576115-82576134 | None:intergenic | 40.0% | |
| CTTCATCATGGTCAAAATCG+AGG | + | chr7_2:82576133-82576152 | None:intergenic | 40.0% | |
| ATACCGGGATTCAAAAACCA+AGG | - | chr7_2:82576310-82576329 | Msa1082470:five_prime_UTR | 40.0% | |
| !! | GAACCTTGGTTTTTGAATCC+CGG | + | chr7_2:82576316-82576335 | None:intergenic | 40.0% |
| GGTGTCAAACTGAACTCAAC+TGG | - | chr7_2:82572930-82572949 | Msa1082470:CDS | 45.0% | |
| ! | TTAGGATCTACCCGGTTTGA+TGG | - | chr7_2:82573372-82573391 | Msa1082470:intron | 45.0% |
| ATGGTATCAGCAATGCTGTG+AGG | - | chr7_2:82573391-82573410 | Msa1082470:intron | 45.0% | |
| TCAGGAATAGGCTGTGAATC+AGG | + | chr7_2:82573450-82573469 | None:intergenic | 45.0% | |
| AAATCACGACCTTCAGGATC+AGG | + | chr7_2:82573468-82573487 | None:intergenic | 45.0% | |
| !! | GAAGGAGGTGTTGATGATGA+TGG | + | chr7_2:82573495-82573514 | None:intergenic | 45.0% |
| GTGTTCTTGCTCCTGCTAAT+TGG | - | chr7_2:82573670-82573689 | Msa1082470:CDS | 45.0% | |
| CTTGCTCCTGCTAATTGGAA+AGG | - | chr7_2:82573675-82573694 | Msa1082470:CDS | 45.0% | |
| GAGTGAGAACAGGGTTAAGA+AGG | - | chr7_2:82573809-82573828 | Msa1082470:CDS | 45.0% | |
| TCTGCATCTAACAGTGCTTC+AGG | - | chr7_2:82573876-82573895 | Msa1082470:intron | 45.0% | |
| TCTAACAGTGCTTCAGGAAG+CGG | - | chr7_2:82573882-82573901 | Msa1082470:intron | 45.0% | |
| !!! | ATTACCTGTTGCTTTTGGCG+CGG | + | chr7_2:82573948-82573967 | None:intergenic | 45.0% |
| ! | TTGGCTAAACTTTTAGGCGG+AGG | + | chr7_2:82574224-82574243 | None:intergenic | 45.0% |
| GACATTGGCCGTACGATATT+TGG | - | chr7_2:82574262-82574281 | Msa1082470:CDS | 45.0% | |
| GATGTGTCTGCAAGCATTCT+AGG | - | chr7_2:82574369-82574388 | Msa1082470:CDS | 45.0% | |
| !!! | CCCCTTTTGAAATCCTTCCA+CGG | + | chr7_2:82574583-82574602 | None:intergenic | 45.0% |
| CCGTGGAAGGATTTCAAAAG+GGG | - | chr7_2:82574580-82574599 | Msa1082470:CDS | 45.0% | |
| TGGAAGGATTTCAAAAGGGG+CGG | - | chr7_2:82574583-82574602 | Msa1082470:CDS | 45.0% | |
| ! | GATTTCAAAAGGGGCGGATT+TGG | - | chr7_2:82574589-82574608 | Msa1082470:CDS | 45.0% |
| ACTCTCTTGCTCTTACGAAC+AGG | + | chr7_2:82574691-82574710 | None:intergenic | 45.0% | |
| ATCTTTGCCTGACCTTGATG+AGG | + | chr7_2:82574881-82574900 | None:intergenic | 45.0% | |
| TCATCAAGGTCAGGCAAAGA+TGG | - | chr7_2:82574880-82574899 | Msa1082470:intron | 45.0% | |
| TGACTCTTACAACGCGTCAA+CGG | - | chr7_2:82575052-82575071 | Msa1082470:intron | 45.0% | |
| TCCAACGAACATAATGAGGG+GGG | + | chr7_2:82575369-82575388 | None:intergenic | 45.0% | |
| TTCTAGCAGGAAAAAGCGAG+AGG | - | chr7_2:82575462-82575481 | Msa1082470:CDS | 45.0% | |
| !! | AAAGAAGCGCCAAGAAGATC+TGG | - | chr7_2:82575492-82575511 | Msa1082470:CDS | 45.0% |
| AAACCTGTGCCAGATCTTCT+TGG | + | chr7_2:82575504-82575523 | None:intergenic | 45.0% | |
| AAGAAGATCTGGCACAGGTT+TGG | - | chr7_2:82575503-82575522 | Msa1082470:CDS | 45.0% | |
| ! | GTGACTTTTCCCGAGGAAAT+GGG | - | chr7_2:82575681-82575700 | Msa1082470:CDS | 45.0% |
| ! | TGACTTTTCCCGAGGAAATG+GGG | - | chr7_2:82575682-82575701 | Msa1082470:CDS | 45.0% |
| !! | GGCTTGGTGTTTATAATCGC+AGG | + | chr7_2:82575711-82575730 | None:intergenic | 45.0% |
| CAAATCTCTGTGTTCGCCTT+TGG | - | chr7_2:82575872-82575891 | Msa1082470:CDS | 45.0% | |
| CCTCAGGAAGATAGACAAAC+AGG | + | chr7_2:82575991-82576010 | None:intergenic | 45.0% | |
| CCTGTTTGTCTATCTTCCTG+AGG | - | chr7_2:82575988-82576007 | Msa1082470:five_prime_UTR | 45.0% | |
| ! | TAGCATTGGAGACTGCAAAG+AGG | + | chr7_2:82576338-82576357 | None:intergenic | 45.0% |
| TTGCAGTCTCCAATGCTACA+AGG | - | chr7_2:82576340-82576359 | Msa1082470:five_prime_UTR | 45.0% | |
| GTATCAGCAATGCTGTGAGG+AGG | - | chr7_2:82573394-82573413 | Msa1082470:intron | 50.0% | |
| CAGCCTATTCCTGATCCTGA+AGG | - | chr7_2:82573456-82573475 | Msa1082470:intron | 50.0% | |
| CGACCTTCAGGATCAGGAAT+AGG | + | chr7_2:82573462-82573481 | None:intergenic | 50.0% | |
| GGCGAAAAATCACGACCTTC+AGG | + | chr7_2:82573474-82573493 | None:intergenic | 50.0% | |
| ATCATCAACACCTCCTTCGG+AGG | - | chr7_2:82573497-82573516 | Msa1082470:intron | 50.0% | |
| TTATCAGCAGCTTCCTCCGA+AGG | + | chr7_2:82573513-82573532 | None:intergenic | 50.0% | |
| ACTCAACCATCTTCGGCTAG+TGG | - | chr7_2:82573612-82573631 | Msa1082470:CDS | 50.0% | |
| AACCATCTTCGGCTAGTGGA+CGG | - | chr7_2:82573616-82573635 | Msa1082470:CDS | 50.0% | |
| TGCCCCAAACTTGTACTCTC+AGG | + | chr7_2:82573771-82573790 | None:intergenic | 50.0% | |
| ! | AGTTTGGGGCAGCTTCAAGA+TGG | - | chr7_2:82573780-82573799 | Msa1082470:intron | 50.0% |
| ! | GGGCAGCTTCAAGATGGATT+GGG | - | chr7_2:82573786-82573805 | Msa1082470:intron | 50.0% |
| !! | GGCAGCTTCAAGATGGATTG+GGG | - | chr7_2:82573787-82573806 | Msa1082470:intron | 50.0% |
| !! | ATGGATTGGGGAGTGAGAAC+AGG | - | chr7_2:82573799-82573818 | Msa1082470:CDS | 50.0% |
| ! | TGGATTGGGGAGTGAGAACA+GGG | - | chr7_2:82573800-82573819 | Msa1082470:CDS | 50.0% |
| !! | AAAAGGGGCGGATTTGGTGT+CGG | - | chr7_2:82574595-82574614 | Msa1082470:CDS | 50.0% |
| TGGACAATGCTGCCTCATCA+AGG | - | chr7_2:82574866-82574885 | Msa1082470:intron | 50.0% | |
| AATGCTGCCTCATCAAGGTC+AGG | - | chr7_2:82574871-82574890 | Msa1082470:intron | 50.0% | |
| GACTCTTACAACGCGTCAAC+GGG | - | chr7_2:82575053-82575072 | Msa1082470:intron | 50.0% | |
| GCTGCTGTCAAAGAAAACCG+AGG | - | chr7_2:82575258-82575277 | Msa1082470:intron | 50.0% | |
| AGAAAACCGAGGCTGCCATT+AGG | - | chr7_2:82575269-82575288 | Msa1082470:intron | 50.0% | |
| TTTACGCCTAATGGCAGCCT+CGG | + | chr7_2:82575278-82575297 | None:intergenic | 50.0% | |
| ! | TGCAAGTTGAGAAGGCTGCT+AGG | - | chr7_2:82575299-82575318 | Msa1082470:intron | 50.0% |
| ! | GCAAGTTGAGAAGGCTGCTA+GGG | - | chr7_2:82575300-82575319 | Msa1082470:intron | 50.0% |
| TCCCCCCTCATTATGTTCGT+TGG | - | chr7_2:82575365-82575384 | Msa1082470:CDS | 50.0% | |
| AAAGTCACCACTGTCCCAGT+AGG | + | chr7_2:82575669-82575688 | None:intergenic | 50.0% | |
| ! | GGTGACTTTTCCCGAGGAAA+TGG | - | chr7_2:82575680-82575699 | Msa1082470:CDS | 50.0% |
| !! | AGCTTGATACCTGATGGGCT+TGG | + | chr7_2:82575727-82575746 | None:intergenic | 50.0% |
| GAGACTGCAAAGAGGAACCT+TGG | + | chr7_2:82576330-82576349 | None:intergenic | 50.0% | |
| TTTCACCAGTAGTCTTCGCC+TGG | + | chr7_2:82576370-82576389 | None:intergenic | 50.0% | |
| TGGCAGTTTGTGGCGGTTGA+CGG | + | chr7_2:82572979-82572998 | None:intergenic | 55.0% | |
| GCAATGCTGTGAGGAGGAAG+AGG | - | chr7_2:82573400-82573419 | Msa1082470:intron | 55.0% | |
| ATAGGCTGTGAATCAGGCCG+TGG | + | chr7_2:82573444-82573463 | None:intergenic | 55.0% | |
| GGGGCAGCTTCAAGATGGAT+TGG | - | chr7_2:82573785-82573804 | Msa1082470:intron | 55.0% | |
| TCTCCGTCTGCTAAGAAGCG+AGG | - | chr7_2:82574544-82574563 | Msa1082470:CDS | 55.0% | |
| AGGCCTCGCTTCTTAGCAGA+CGG | + | chr7_2:82574550-82574569 | None:intergenic | 55.0% | |
| GCTAAGAAGCGAGGCCTCAA+AGG | - | chr7_2:82574553-82574572 | Msa1082470:CDS | 55.0% | |
| !! | AAAGGGGCGGATTTGGTGTC+GGG | - | chr7_2:82574596-82574615 | Msa1082470:CDS | 55.0% |
| GGGAAGGAAGAGACGTCGAT+GGG | - | chr7_2:82574616-82574635 | Msa1082470:CDS | 55.0% | |
| GGAAGGAAGAGACGTCGATG+GGG | - | chr7_2:82574617-82574636 | Msa1082470:CDS | 55.0% | |
| AGTACCCAAGCGACGTGTAC+TGG | - | chr7_2:82574708-82574727 | Msa1082470:CDS | 55.0% | |
| CCATCCAGTACACGTCGCTT+GGG | + | chr7_2:82574715-82574734 | None:intergenic | 55.0% | |
| TCCATCCAGTACACGTCGCT+TGG | + | chr7_2:82574716-82574735 | None:intergenic | 55.0% | |
| GAAGTGGAATCAGGGTCTGC+TGG | - | chr7_2:82574955-82574974 | Msa1082470:intron | 55.0% | |
| GGGGCAGGAGGTAATCCATT+GGG | + | chr7_2:82575132-82575151 | None:intergenic | 55.0% | |
| TGGGGCAGGAGGTAATCCAT+TGG | + | chr7_2:82575133-82575152 | None:intergenic | 55.0% | |
| TACTCACTTCTAGGTGGGGC+AGG | + | chr7_2:82575147-82575166 | None:intergenic | 55.0% | |
| GACAGCAGCTCCTCTTCTGT+AGG | + | chr7_2:82575247-82575266 | None:intergenic | 55.0% | |
| GAAGGCTGCTAGGGAATCTG+AGG | - | chr7_2:82575309-82575328 | Msa1082470:intron | 55.0% | |
| AGATCTGGCACAGGTTTGGC+TGG | - | chr7_2:82575507-82575526 | Msa1082470:CDS | 55.0% | |
| GATCTGGCACAGGTTTGGCT+GGG | - | chr7_2:82575508-82575527 | Msa1082470:CDS | 55.0% | |
| GATAGGTCCTACTGGGACAG+TGG | - | chr7_2:82575659-82575678 | Msa1082470:CDS | 55.0% | |
| ! | GACAGTGGTGACTTTTCCCG+AGG | - | chr7_2:82575674-82575693 | Msa1082470:CDS | 55.0% |
| ! | CCTGGACAGCCTTGTAGCAT+TGG | + | chr7_2:82576352-82576371 | None:intergenic | 55.0% |
| CCAATGCTACAAGGCTGTCC+AGG | - | chr7_2:82576349-82576368 | Msa1082470:five_prime_UTR | 55.0% | |
| TCAGCAGCTTCCTCCGAAGG+AGG | + | chr7_2:82573510-82573529 | None:intergenic | 60.0% | |
| CTCCGTCCACTAGCCGAAGA+TGG | + | chr7_2:82573621-82573640 | None:intergenic | 60.0% | |
| !!! | CTGTTGCTTTTGGCGCGGTC+TGG | + | chr7_2:82573943-82573962 | None:intergenic | 60.0% |
| CAGACCGCGCCAAAAGCAAC+AGG | - | chr7_2:82573941-82573960 | Msa1082470:intron | 60.0% | |
| CCTTCCACGGAAGGCCTTTG+AGG | + | chr7_2:82574570-82574589 | None:intergenic | 60.0% | |
| CCTCAAAGGCCTTCCGTGGA+AGG | - | chr7_2:82574567-82574586 | Msa1082470:CDS | 60.0% | |
| CGGGAAGGAAGAGACGTCGA+TGG | - | chr7_2:82574615-82574634 | Msa1082470:CDS | 60.0% | |
| CCCAAGCGACGTGTACTGGA+TGG | - | chr7_2:82574712-82574731 | Msa1082470:CDS | 60.0% | |
| AGGGTCTGCTGGAGAGCAAG+AGG | - | chr7_2:82574966-82574985 | Msa1082470:intron | 60.0% | |
| CGTCAACGGGCCCTTCAATC+AGG | - | chr7_2:82575066-82575085 | Msa1082470:intron | 60.0% | |
| TCACTTCTAGGTGGGGCAGG+AGG | + | chr7_2:82575144-82575163 | None:intergenic | 60.0% | |
| GCGCCAAGAAGATCTGGCAC+AGG | - | chr7_2:82575498-82575517 | Msa1082470:CDS | 60.0% | |
| GCAGGGATCCCCATTTCCTC+GGG | + | chr7_2:82575693-82575712 | None:intergenic | 60.0% | |
| CGCAGGGATCCCCATTTCCT+CGG | + | chr7_2:82575694-82575713 | None:intergenic | 60.0% | |
| GCTGTCCAGGCGAAGACTAC+TGG | - | chr7_2:82576362-82576381 | Msa1082470:five_prime_UTR | 60.0% | |
| AGAGGAGCCAACCATCGCGC+AGG | - | chr7_2:82573418-82573437 | Msa1082470:intron | 65.0% | |
| GAGGCCTCAAAGGCCTTCCG+TGG | - | chr7_2:82574563-82574582 | Msa1082470:CDS | 65.0% | |
| !! | GGGCGGATTTGGTGTCGGGA+AGG | - | chr7_2:82574600-82574619 | Msa1082470:CDS | 65.0% |
| GCACACATCTCGCGAGGTGG+AGG | + | chr7_2:82576263-82576282 | None:intergenic | 65.0% | |
| CCAGCACACATCTCGCGAGG+TGG | + | chr7_2:82576266-82576285 | None:intergenic | 65.0% | |
| CCACCTCGCGAGATGTGTGC+TGG | - | chr7_2:82576263-82576282 | Msa1082470:five_prime_UTR | 65.0% | |
| GGACCAGCACACATCTCGCG+AGG | + | chr7_2:82576269-82576288 | None:intergenic | 65.0% | |
| GCCAACCATCGCGCAGGCCA+CGG | - | chr7_2:82573424-82573443 | Msa1082470:intron | 70.0% | |
| GCCGTGGCCTGCGCGATGGT+TGG | + | chr7_2:82573428-82573447 | None:intergenic | 75.0% | |
| TCAGGCCGTGGCCTGCGCGA+TGG | + | chr7_2:82573432-82573451 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 82572916 | 82576400 | 82572916 | ID=Msa1082470;Name=Msa1082470 |
| chr7_2 | mRNA | 82572916 | 82576400 | 82572916 | ID=Msa1082470-mRNA-1;Parent=Msa1082470;Name=Msa1082470-mRNA-1;_AED=0.10;_eAED=0.16;_QI=447|0.8|0.83|1|1|1|6|0|571 |
| chr7_2 | exon | 82572916 | 82573075 | 82572916 | ID=Msa1082470-mRNA-1:exon:21430;Parent=Msa1082470-mRNA-1 |
| chr7_2 | exon | 82573580 | 82573707 | 82573580 | ID=Msa1082470-mRNA-1:exon:21429;Parent=Msa1082470-mRNA-1 |
| chr7_2 | exon | 82573797 | 82573886 | 82573797 | ID=Msa1082470-mRNA-1:exon:21428;Parent=Msa1082470-mRNA-1 |
| chr7_2 | exon | 82573986 | 82574086 | 82573986 | ID=Msa1082470-mRNA-1:exon:21427;Parent=Msa1082470-mRNA-1 |
| chr7_2 | exon | 82574157 | 82574793 | 82574157 | ID=Msa1082470-mRNA-1:exon:21426;Parent=Msa1082470-mRNA-1 |
| chr7_2 | exon | 82575354 | 82576400 | 82575354 | ID=Msa1082470-mRNA-1:exon:21425;Parent=Msa1082470-mRNA-1 |
| chr7_2 | five_prime_UTR | 82575954 | 82576400 | 82575954 | ID=Msa1082470-mRNA-1:five_prime_utr;Parent=Msa1082470-mRNA-1 |
| chr7_2 | CDS | 82575354 | 82575953 | 82575354 | ID=Msa1082470-mRNA-1:cds;Parent=Msa1082470-mRNA-1 |
| chr7_2 | CDS | 82574157 | 82574793 | 82574157 | ID=Msa1082470-mRNA-1:cds;Parent=Msa1082470-mRNA-1 |
| chr7_2 | CDS | 82573986 | 82574086 | 82573986 | ID=Msa1082470-mRNA-1:cds;Parent=Msa1082470-mRNA-1 |
| chr7_2 | CDS | 82573797 | 82573886 | 82573797 | ID=Msa1082470-mRNA-1:cds;Parent=Msa1082470-mRNA-1 |
| chr7_2 | CDS | 82573580 | 82573707 | 82573580 | ID=Msa1082470-mRNA-1:cds;Parent=Msa1082470-mRNA-1 |
| chr7_2 | CDS | 82572916 | 82573075 | 82572916 | ID=Msa1082470-mRNA-1:cds;Parent=Msa1082470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
