AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0773590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0773590 MtrunA17_Chr5g0427491 98.830 171 1 1 1 170 1 171 2.67e-122 341
Msa0773590 MtrunA17_Chr3g0132871 58.427 178 61 7 1 170 1 173 1.55e-54 170
Msa0773590 MtrunA17_Chr5g0412221 50.000 176 75 8 1 169 1 170 3.39e-42 139
Msa0773590 MtrunA17_Chr8g0367531 50.400 125 52 4 54 169 48 171 4.96e-25 95.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0773590 AT4G38060.3 44.156 77 41 2 93 168 59 134 1.98e-14 67.0
Msa0773590 AT4G38060.2 44.156 77 41 2 93 168 59 134 1.98e-14 67.0
Msa0773590 AT4G38060.4 44.156 77 41 2 93 168 59 134 1.98e-14 67.0
Msa0773590 AT5G65480.1 39.759 83 42 3 85 167 76 150 2.28e-11 59.3

Find 57 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGATGGTGGATGTGTTTC+TGG 0.033913 5_2:-48628140 Msa0773590:CDS
TCACAACAATGTGGTGAAAT+TGG 0.174455 5_2:-48626433 Msa0773590:three_prime_UTR
CCTTGTTATGGAAGAGATTA+TGG 0.254169 5_2:-48628014 Msa0773590:CDS
AATATGATTGGTAAACTTCT+TGG 0.258151 5_2:-48626569 Msa0773590:three_prime_UTR
CCAATCTCTCATGGTGGTTA+TGG 0.284622 5_2:-48628367 Msa0773590:CDS
CAAGAAAGGTGAAGAGAAAA+TGG 0.289877 5_2:-48628220 Msa0773590:CDS
AGAGAAACATGTTTGAAGTT+TGG 0.311863 5_2:-48626405 Msa0773590:three_prime_UTR
TGAAGAGAAAATGGAATAGT+AGG 0.316249 5_2:-48628211 Msa0773590:CDS
AAGAGAGGAGGAAAGTAGAT+AGG 0.329784 5_2:-48628187 Msa0773590:CDS
GACAAAATCCTCTGATCTTA+AGG 0.338690 5_2:-48626665 Msa0773590:three_prime_UTR
ATATATGTCTATATGCGTTT+TGG 0.344168 5_2:-48626259 Msa0773590:three_prime_UTR
GCAAGAAATATGTGGAAAAC+TGG 0.361128 5_2:-48626747 Msa0773590:CDS
TGACAATGTCTTCTCCTCAT+AGG 0.363084 5_2:+48626533 None:intergenic
GATGATTCTGATTGGTCAAT+TGG 0.374079 5_2:-48628107 Msa0773590:CDS
TGAGGTAATGAGATTTCCTT+TGG 0.393984 5_2:-48628267 Msa0773590:CDS
CACAACAATGTGGTGAAATT+GGG 0.398333 5_2:-48626432 Msa0773590:three_prime_UTR
GTTGTTCTTGTTCCTTCTGA+TGG 0.413282 5_2:-48628155 Msa0773590:CDS
AGAGAGGAGGAAAGTAGATA+GGG 0.446591 5_2:-48628186 Msa0773590:CDS
CAAGAACCAAGAATCTCAAA+AGG 0.446650 5_2:-48628332 Msa0773590:CDS
GAAGAGAAAATGGAATAGTA+GGG 0.469666 5_2:-48628210 Msa0773590:CDS
CCATAACCACCATGAGAGAT+TGG 0.475688 5_2:+48628367 None:intergenic
CCTATGTTTGCTTGCACCAA+AGG 0.477638 5_2:+48628251 None:intergenic
TTCAACAGATTTGAACATGT+TGG 0.479485 5_2:-48628294 Msa0773590:CDS
CGGAATCCGATGATTCTGAT+TGG 0.482757 5_2:-48628115 Msa0773590:CDS
TGATTGGTCAATTGGATGGT+TGG 0.487254 5_2:-48628099 Msa0773590:CDS
TGGTGGATGTGTTTCTGGTT+CGG 0.487310 5_2:-48628135 Msa0773590:CDS
CCTTTGGTGCAAGCAAACAT+AGG 0.502632 5_2:-48628251 Msa0773590:CDS
CATAGGATCATCATCAAGAA+AGG 0.508029 5_2:-48628234 Msa0773590:CDS
AATGGAATAGTAGGGAAGAG+AGG 0.508759 5_2:-48628202 Msa0773590:CDS
GTTCTTGTTCCTTCTGATGG+TGG 0.509264 5_2:-48628152 Msa0773590:CDS
ACTAAAAGCAACTTACTCAA+TGG 0.526904 5_2:-48627975 Msa0773590:CDS
TTATCAGTTTCATCATCACT+TGG 0.530693 5_2:+48628056 None:intergenic
AGCAACTTACTCAATGGTGT+TGG 0.531403 5_2:-48627969 Msa0773590:CDS
GATAATAATTGAAACCTATG+AGG 0.531958 5_2:-48626547 Msa0773590:three_prime_UTR
ATTGGATGGTTGGAACCTCA+TGG 0.532027 5_2:-48628089 Msa0773590:CDS
AAATGATGAAGATTAGTGTC+AGG 0.535846 5_2:+48626705 None:intergenic
TGTCAAGAATAAAGCAATTG+TGG 0.541510 5_2:-48626515 Msa0773590:three_prime_UTR
TTTGAACATGTTGGAATCTG+AGG 0.545709 5_2:-48628285 Msa0773590:CDS
ATTCTGATTGGTCAATTGGA+TGG 0.551491 5_2:-48628103 Msa0773590:CDS
AATTGACCAATCAGAATCAT+CGG 0.564384 5_2:+48628109 None:intergenic
CTCTCATGGTGGTTATGGAG+TGG 0.566656 5_2:-48628362 Msa0773590:CDS
CCATAATCTCTTCCATAACA+AGG 0.570281 5_2:+48628014 None:intergenic
GATGTGATGTCAAATATGAT+TGG 0.573394 5_2:-48626581 Msa0773590:three_prime_UTR
TGGCATTCACCAATCTCTCA+TGG 0.573580 5_2:-48628376 Msa0773590:CDS
TGGTTGGAACCTCATGGACC+TGG 0.574553 5_2:-48628083 Msa0773590:CDS
ATTTGTTGCCTTAAGATCAG+AGG 0.574843 5_2:+48626657 None:intergenic
AAGAACCAAGAATCTCAAAA+GGG 0.581798 5_2:-48628331 Msa0773590:CDS
TGCAGAAAGCAAGAAATATG+TGG 0.588632 5_2:-48626755 Msa0773590:intron
TCATCATCACTTGGAAAACC+AGG 0.594451 5_2:+48628065 None:intergenic
GGAATAGTAGGGAAGAGAGG+AGG 0.604239 5_2:-48628199 Msa0773590:CDS
GAAACACATCCACCATCAGA+AGG 0.625569 5_2:+48628143 None:intergenic
AATTCGACGTAAATAAATGT+CGG 0.636507 5_2:-48628399 Msa0773590:exon
CTTGGAAAACCAGGTCCATG+AGG 0.659242 5_2:+48628074 None:intergenic
TCGACGTAAATAAATGTCGG+TGG 0.661450 5_2:-48628396 Msa0773590:exon
AAGAACAAAAGTTAGTAACA+AGG 0.676734 5_2:+48628444 None:intergenic
CATTCACCAATCTCTCATGG+TGG 0.721722 5_2:-48628373 Msa0773590:CDS
CTTTGAGAATCACAACAATG+TGG 0.751456 5_2:-48626442 Msa0773590:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAGTGTTGATTTATAAAAT+AGG + chr5_2:48627592-48627611 None:intergenic 15.0%
!!! TGTCATTTAAACATAATTAA+GGG + chr5_2:48627647-48627666 None:intergenic 15.0%
!!! TAAGTGTTGATTTATAAAAT+AGG + chr5_2:48627592-48627611 None:intergenic 15.0%
!!! TGTCATTTAAACATAATTAA+GGG + chr5_2:48627647-48627666 None:intergenic 15.0%
!!! TTTTTAGATAGTTATTCTGA+TGG - chr5_2:48626817-48626836 Msa0773590:intron 20.0%
!! TATAATATGAATGCTTGAAT+TGG - chr5_2:48626929-48626948 Msa0773590:intron 20.0%
!! GATAGAACTTTATAATTACA+AGG + chr5_2:48626974-48626993 None:intergenic 20.0%
!!! ATTTTGTAATATTGACAATG+TGG + chr5_2:48627008-48627027 None:intergenic 20.0%
!! TCCATAAAATTGCAAAATAT+TGG - chr5_2:48627030-48627049 Msa0773590:intron 20.0%
!!! ACCAATATTTTGCAATTTTA+TGG + chr5_2:48627034-48627053 None:intergenic 20.0%
!!! GATTAACTTTTTATAATGTG+AGG - chr5_2:48627151-48627170 Msa0773590:intron 20.0%
!!! TTTAGAATATCAATAATGTG+AGG - chr5_2:48627180-48627199 Msa0773590:intron 20.0%
!! TTAGAATATCAATAATGTGA+GGG - chr5_2:48627181-48627200 Msa0773590:intron 20.0%
!! GTCATTTAAACATAATTAAG+GGG + chr5_2:48627646-48627665 None:intergenic 20.0%
!!! GTGTCATTTAAACATAATTA+AGG + chr5_2:48627648-48627667 None:intergenic 20.0%
!!! TTCAGATTTTATTTTTCTTC+TGG - chr5_2:48627943-48627962 Msa0773590:CDS 20.0%
!!! AAAAAAAAAAAAAAGAGCAC+TGG - chr5_2:48628150-48628169 Msa0773590:CDS 20.0%
!!! TTTTTAGATAGTTATTCTGA+TGG - chr5_2:48626817-48626836 Msa0773590:intron 20.0%
!! TATAATATGAATGCTTGAAT+TGG - chr5_2:48626929-48626948 Msa0773590:intron 20.0%
!! GATAGAACTTTATAATTACA+AGG + chr5_2:48626974-48626993 None:intergenic 20.0%
!!! ATTTTGTAATATTGACAATG+TGG + chr5_2:48627008-48627027 None:intergenic 20.0%
!! TCCATAAAATTGCAAAATAT+TGG - chr5_2:48627030-48627049 Msa0773590:intron 20.0%
!!! ACCAATATTTTGCAATTTTA+TGG + chr5_2:48627034-48627053 None:intergenic 20.0%
!!! GATTAACTTTTTATAATGTG+AGG - chr5_2:48627151-48627170 Msa0773590:intron 20.0%
!!! TTTAGAATATCAATAATGTG+AGG - chr5_2:48627180-48627199 Msa0773590:intron 20.0%
!! TTAGAATATCAATAATGTGA+GGG - chr5_2:48627181-48627200 Msa0773590:intron 20.0%
!! GTCATTTAAACATAATTAAG+GGG + chr5_2:48627646-48627665 None:intergenic 20.0%
!!! GTGTCATTTAAACATAATTA+AGG + chr5_2:48627648-48627667 None:intergenic 20.0%
!!! TTCAGATTTTATTTTTCTTC+TGG - chr5_2:48627943-48627962 Msa0773590:CDS 20.0%
!!! AAAAAAAAAAAAAAGAGCAC+TGG - chr5_2:48628150-48628169 Msa0773590:CDS 20.0%
! AAGAACAAAAGTTAGTAACA+AGG + chr5_2:48626318-48626337 None:intergenic 25.0%
! AATTCGACGTAAATAAATGT+CGG - chr5_2:48626360-48626379 Msa0773590:three_prime_UTR 25.0%
!!! TGATAATAGTTTTGCAGTTT+TGG - chr5_2:48626720-48626739 Msa0773590:exon 25.0%
!!! ATTTCTCATCTGTTTTTCTA+TGG - chr5_2:48627429-48627448 Msa0773590:intron 25.0%
!!! TTTCTCATCTGTTTTTCTAT+GGG - chr5_2:48627430-48627449 Msa0773590:intron 25.0%
!! AAATTTAACTTACATCCCTA+AGG + chr5_2:48627764-48627783 None:intergenic 25.0%
!! AGCAATGCTATTAATTTTAG+GGG + chr5_2:48627787-48627806 None:intergenic 25.0%
!! CAGCAATGCTATTAATTTTA+GGG + chr5_2:48627788-48627807 None:intergenic 25.0%
! TTGTGCATATGTTAATTATG+TGG - chr5_2:48627917-48627936 Msa0773590:intron 25.0%
! TTTCTGCAACAACAAAAAAA+AGG + chr5_2:48627992-48628011 None:intergenic 25.0%
! AATATGATTGGTAAACTTCT+TGG - chr5_2:48628190-48628209 Msa0773590:CDS 25.0%
! GATAATAATTGAAACCTATG+AGG - chr5_2:48628212-48628231 Msa0773590:CDS 25.0%
!! ATATATGTCTATATGCGTTT+TGG - chr5_2:48628500-48628519 Msa0773590:five_prime_UTR 25.0%
! AAGAACAAAAGTTAGTAACA+AGG + chr5_2:48626318-48626337 None:intergenic 25.0%
! AATTCGACGTAAATAAATGT+CGG - chr5_2:48626360-48626379 Msa0773590:three_prime_UTR 25.0%
!!! TGATAATAGTTTTGCAGTTT+TGG - chr5_2:48626720-48626739 Msa0773590:exon 25.0%
!!! ATTTCTCATCTGTTTTTCTA+TGG - chr5_2:48627429-48627448 Msa0773590:intron 25.0%
!!! TTTCTCATCTGTTTTTCTAT+GGG - chr5_2:48627430-48627449 Msa0773590:intron 25.0%
!! AAATTTAACTTACATCCCTA+AGG + chr5_2:48627764-48627783 None:intergenic 25.0%
!! AGCAATGCTATTAATTTTAG+GGG + chr5_2:48627787-48627806 None:intergenic 25.0%
!! CAGCAATGCTATTAATTTTA+GGG + chr5_2:48627788-48627807 None:intergenic 25.0%
! TTGTGCATATGTTAATTATG+TGG - chr5_2:48627917-48627936 Msa0773590:intron 25.0%
! TTTCTGCAACAACAAAAAAA+AGG + chr5_2:48627992-48628011 None:intergenic 25.0%
! AATATGATTGGTAAACTTCT+TGG - chr5_2:48628190-48628209 Msa0773590:CDS 25.0%
! GATAATAATTGAAACCTATG+AGG - chr5_2:48628212-48628231 Msa0773590:CDS 25.0%
!! ATATATGTCTATATGCGTTT+TGG - chr5_2:48628500-48628519 Msa0773590:five_prime_UTR 25.0%
AAGAACCAAGAATCTCAAAA+GGG - chr5_2:48626428-48626447 Msa0773590:three_prime_UTR 30.0%
TTCAACAGATTTGAACATGT+TGG - chr5_2:48626465-48626484 Msa0773590:three_prime_UTR 30.0%
TGAAGAGAAAATGGAATAGT+AGG - chr5_2:48626548-48626567 Msa0773590:three_prime_UTR 30.0%
GAAGAGAAAATGGAATAGTA+GGG - chr5_2:48626549-48626568 Msa0773590:three_prime_UTR 30.0%
AATTGACCAATCAGAATCAT+CGG + chr5_2:48626653-48626672 None:intergenic 30.0%
TTATCAGTTTCATCATCACT+TGG + chr5_2:48626706-48626725 None:intergenic 30.0%
ACTAAAAGCAACTTACTCAA+TGG - chr5_2:48626784-48626803 Msa0773590:intron 30.0%
TTGTAATATTGACAATGTGG+AGG + chr5_2:48627005-48627024 None:intergenic 30.0%
TTGCAAAATATTGGTCAAGT+TGG - chr5_2:48627039-48627058 Msa0773590:intron 30.0%
!! TTGTCTCTGAGTTTTTGTTT+GGG - chr5_2:48627295-48627314 Msa0773590:intron 30.0%
!! TATGTCAGTGGTTAATTTGT+CGG - chr5_2:48627455-48627474 Msa0773590:intron 30.0%
!! TTGAAGGAGTATTATGAAAG+AGG + chr5_2:48627522-48627541 None:intergenic 30.0%
! GCAGCAATGCTATTAATTTT+AGG + chr5_2:48627789-48627808 None:intergenic 30.0%
TTTGAAAATCTTGCTGCATT+TGG - chr5_2:48627884-48627903 Msa0773590:intron 30.0%
AAATGATGAAGATTAGTGTC+AGG + chr5_2:48628057-48628076 None:intergenic 30.0%
GATGTGATGTCAAATATGAT+TGG - chr5_2:48628178-48628197 Msa0773590:CDS 30.0%
TGTCAAGAATAAAGCAATTG+TGG - chr5_2:48628244-48628263 Msa0773590:CDS 30.0%
! AGAGAAACATGTTTGAAGTT+TGG - chr5_2:48628354-48628373 Msa0773590:CDS 30.0%
AAGAACCAAGAATCTCAAAA+GGG - chr5_2:48626428-48626447 Msa0773590:three_prime_UTR 30.0%
TTCAACAGATTTGAACATGT+TGG - chr5_2:48626465-48626484 Msa0773590:three_prime_UTR 30.0%
TGAAGAGAAAATGGAATAGT+AGG - chr5_2:48626548-48626567 Msa0773590:three_prime_UTR 30.0%
GAAGAGAAAATGGAATAGTA+GGG - chr5_2:48626549-48626568 Msa0773590:three_prime_UTR 30.0%
AATTGACCAATCAGAATCAT+CGG + chr5_2:48626653-48626672 None:intergenic 30.0%
TTATCAGTTTCATCATCACT+TGG + chr5_2:48626706-48626725 None:intergenic 30.0%
ACTAAAAGCAACTTACTCAA+TGG - chr5_2:48626784-48626803 Msa0773590:intron 30.0%
TTGTAATATTGACAATGTGG+AGG + chr5_2:48627005-48627024 None:intergenic 30.0%
TTGCAAAATATTGGTCAAGT+TGG - chr5_2:48627039-48627058 Msa0773590:intron 30.0%
!! TTGTCTCTGAGTTTTTGTTT+GGG - chr5_2:48627295-48627314 Msa0773590:intron 30.0%
!! TATGTCAGTGGTTAATTTGT+CGG - chr5_2:48627455-48627474 Msa0773590:intron 30.0%
!! TTGAAGGAGTATTATGAAAG+AGG + chr5_2:48627522-48627541 None:intergenic 30.0%
! GCAGCAATGCTATTAATTTT+AGG + chr5_2:48627789-48627808 None:intergenic 30.0%
TTTGAAAATCTTGCTGCATT+TGG - chr5_2:48627884-48627903 Msa0773590:intron 30.0%
AAATGATGAAGATTAGTGTC+AGG + chr5_2:48628057-48628076 None:intergenic 30.0%
GATGTGATGTCAAATATGAT+TGG - chr5_2:48628178-48628197 Msa0773590:CDS 30.0%
TGTCAAGAATAAAGCAATTG+TGG - chr5_2:48628244-48628263 Msa0773590:CDS 30.0%
! AGAGAAACATGTTTGAAGTT+TGG - chr5_2:48628354-48628373 Msa0773590:CDS 30.0%
! TAACTTTTGTTCTTCTCGAC+AGG - chr5_2:48626324-48626343 Msa0773590:three_prime_UTR 35.0%
CAAGAACCAAGAATCTCAAA+AGG - chr5_2:48626427-48626446 Msa0773590:three_prime_UTR 35.0%
TTTGAACATGTTGGAATCTG+AGG - chr5_2:48626474-48626493 Msa0773590:three_prime_UTR 35.0%
TGAGGTAATGAGATTTCCTT+TGG - chr5_2:48626492-48626511 Msa0773590:three_prime_UTR 35.0%
CATAGGATCATCATCAAGAA+AGG - chr5_2:48626525-48626544 Msa0773590:three_prime_UTR 35.0%
CAAGAAAGGTGAAGAGAAAA+TGG - chr5_2:48626539-48626558 Msa0773590:three_prime_UTR 35.0%
! GATGATTCTGATTGGTCAAT+TGG - chr5_2:48626652-48626671 Msa0773590:three_prime_UTR 35.0%
! ATTCTGATTGGTCAATTGGA+TGG - chr5_2:48626656-48626675 Msa0773590:three_prime_UTR 35.0%
CCATAATCTCTTCCATAACA+AGG + chr5_2:48626748-48626767 None:intergenic 35.0%
! CCTTGTTATGGAAGAGATTA+TGG - chr5_2:48626745-48626764 Msa0773590:CDS 35.0%
ATTGGAGTAGATACTCTAGT+TGG - chr5_2:48626947-48626966 Msa0773590:intron 35.0%
AACAGTTCAACCCAATTCAA+GGG + chr5_2:48627244-48627263 None:intergenic 35.0%
! GTTGTCTCTGAGTTTTTGTT+TGG - chr5_2:48627294-48627313 Msa0773590:intron 35.0%
ATAAGCATACTTCAATGGAG+TGG + chr5_2:48627402-48627421 None:intergenic 35.0%
GTGCTATAAGCATACTTCAA+TGG + chr5_2:48627407-48627426 None:intergenic 35.0%
TTTCTATGGGAATATGTCAG+TGG - chr5_2:48627443-48627462 Msa0773590:intron 35.0%
!! ATGTCAGTGGTTAATTTGTC+GGG - chr5_2:48627456-48627475 Msa0773590:intron 35.0%
! TTCATGAAAGTGTAGCCTAA+TGG + chr5_2:48627556-48627575 None:intergenic 35.0%
! ATAGCTTCTAAAAAGCAGAG+GGG + chr5_2:48627676-48627695 None:intergenic 35.0%
! CATAGCTTCTAAAAAGCAGA+GGG + chr5_2:48627677-48627696 None:intergenic 35.0%
! ACATAGCTTCTAAAAAGCAG+AGG + chr5_2:48627678-48627697 None:intergenic 35.0%
TTAGAAGCTATGTATGATCG+AGG - chr5_2:48627685-48627704 Msa0773590:intron 35.0%
TAGAAGCTATGTATGATCGA+GGG - chr5_2:48627686-48627705 Msa0773590:intron 35.0%
CTTCGATTATGTTCAAGACA+CGG + chr5_2:48627717-48627736 None:intergenic 35.0%
GTGTCTTGAACATAATCGAA+GGG - chr5_2:48627716-48627735 Msa0773590:intron 35.0%
TGTCTTGAACATAATCGAAG+GGG - chr5_2:48627717-48627736 Msa0773590:intron 35.0%
CGTCATTTAAGCATACCTTA+GGG - chr5_2:48627746-48627765 Msa0773590:intron 35.0%
! ACTCTGTAGTCTTGAAAGAT+AGG - chr5_2:48627809-48627828 Msa0773590:intron 35.0%
TGCAGAAAGCAAGAAATATG+TGG - chr5_2:48628004-48628023 Msa0773590:CDS 35.0%
GCAAGAAATATGTGGAAAAC+TGG - chr5_2:48628012-48628031 Msa0773590:CDS 35.0%
! GGATTTTGTCATGAAGATAC+AGG + chr5_2:48628084-48628103 None:intergenic 35.0%
GACAAAATCCTCTGATCTTA+AGG - chr5_2:48628094-48628113 Msa0773590:CDS 35.0%
! ATTTGTTGCCTTAAGATCAG+AGG + chr5_2:48628105-48628124 None:intergenic 35.0%
! CTTTGAGAATCACAACAATG+TGG - chr5_2:48628317-48628336 Msa0773590:CDS 35.0%
TCACAACAATGTGGTGAAAT+TGG - chr5_2:48628326-48628345 Msa0773590:CDS 35.0%
CACAACAATGTGGTGAAATT+GGG - chr5_2:48628327-48628346 Msa0773590:CDS 35.0%
! TAACTTTTGTTCTTCTCGAC+AGG - chr5_2:48626324-48626343 Msa0773590:three_prime_UTR 35.0%
CAAGAACCAAGAATCTCAAA+AGG - chr5_2:48626427-48626446 Msa0773590:three_prime_UTR 35.0%
TTTGAACATGTTGGAATCTG+AGG - chr5_2:48626474-48626493 Msa0773590:three_prime_UTR 35.0%
TGAGGTAATGAGATTTCCTT+TGG - chr5_2:48626492-48626511 Msa0773590:three_prime_UTR 35.0%
CATAGGATCATCATCAAGAA+AGG - chr5_2:48626525-48626544 Msa0773590:three_prime_UTR 35.0%
CAAGAAAGGTGAAGAGAAAA+TGG - chr5_2:48626539-48626558 Msa0773590:three_prime_UTR 35.0%
! GATGATTCTGATTGGTCAAT+TGG - chr5_2:48626652-48626671 Msa0773590:three_prime_UTR 35.0%
! ATTCTGATTGGTCAATTGGA+TGG - chr5_2:48626656-48626675 Msa0773590:three_prime_UTR 35.0%
CCATAATCTCTTCCATAACA+AGG + chr5_2:48626748-48626767 None:intergenic 35.0%
! CCTTGTTATGGAAGAGATTA+TGG - chr5_2:48626745-48626764 Msa0773590:CDS 35.0%
ATTGGAGTAGATACTCTAGT+TGG - chr5_2:48626947-48626966 Msa0773590:intron 35.0%
AACAGTTCAACCCAATTCAA+GGG + chr5_2:48627244-48627263 None:intergenic 35.0%
! GTTGTCTCTGAGTTTTTGTT+TGG - chr5_2:48627294-48627313 Msa0773590:intron 35.0%
ATAAGCATACTTCAATGGAG+TGG + chr5_2:48627402-48627421 None:intergenic 35.0%
GTGCTATAAGCATACTTCAA+TGG + chr5_2:48627407-48627426 None:intergenic 35.0%
TTTCTATGGGAATATGTCAG+TGG - chr5_2:48627443-48627462 Msa0773590:intron 35.0%
!! ATGTCAGTGGTTAATTTGTC+GGG - chr5_2:48627456-48627475 Msa0773590:intron 35.0%
! TTCATGAAAGTGTAGCCTAA+TGG + chr5_2:48627556-48627575 None:intergenic 35.0%
! ATAGCTTCTAAAAAGCAGAG+GGG + chr5_2:48627676-48627695 None:intergenic 35.0%
! CATAGCTTCTAAAAAGCAGA+GGG + chr5_2:48627677-48627696 None:intergenic 35.0%
! ACATAGCTTCTAAAAAGCAG+AGG + chr5_2:48627678-48627697 None:intergenic 35.0%
TTAGAAGCTATGTATGATCG+AGG - chr5_2:48627685-48627704 Msa0773590:intron 35.0%
TAGAAGCTATGTATGATCGA+GGG - chr5_2:48627686-48627705 Msa0773590:intron 35.0%
CTTCGATTATGTTCAAGACA+CGG + chr5_2:48627717-48627736 None:intergenic 35.0%
GTGTCTTGAACATAATCGAA+GGG - chr5_2:48627716-48627735 Msa0773590:intron 35.0%
TGTCTTGAACATAATCGAAG+GGG - chr5_2:48627717-48627736 Msa0773590:intron 35.0%
CGTCATTTAAGCATACCTTA+GGG - chr5_2:48627746-48627765 Msa0773590:intron 35.0%
! ACTCTGTAGTCTTGAAAGAT+AGG - chr5_2:48627809-48627828 Msa0773590:intron 35.0%
TGCAGAAAGCAAGAAATATG+TGG - chr5_2:48628004-48628023 Msa0773590:CDS 35.0%
GCAAGAAATATGTGGAAAAC+TGG - chr5_2:48628012-48628031 Msa0773590:CDS 35.0%
! GGATTTTGTCATGAAGATAC+AGG + chr5_2:48628084-48628103 None:intergenic 35.0%
GACAAAATCCTCTGATCTTA+AGG - chr5_2:48628094-48628113 Msa0773590:CDS 35.0%
! ATTTGTTGCCTTAAGATCAG+AGG + chr5_2:48628105-48628124 None:intergenic 35.0%
! CTTTGAGAATCACAACAATG+TGG - chr5_2:48628317-48628336 Msa0773590:CDS 35.0%
TCACAACAATGTGGTGAAAT+TGG - chr5_2:48628326-48628345 Msa0773590:CDS 35.0%
CACAACAATGTGGTGAAATT+GGG - chr5_2:48628327-48628346 Msa0773590:CDS 35.0%
TCGACGTAAATAAATGTCGG+TGG - chr5_2:48626363-48626382 Msa0773590:three_prime_UTR 40.0%
!!! GAAGTCCCTTTTGAGATTCT+TGG + chr5_2:48626436-48626455 None:intergenic 40.0%
AATGGAATAGTAGGGAAGAG+AGG - chr5_2:48626557-48626576 Msa0773590:three_prime_UTR 40.0%
AAGAGAGGAGGAAAGTAGAT+AGG - chr5_2:48626572-48626591 Msa0773590:three_prime_UTR 40.0%
AGAGAGGAGGAAAGTAGATA+GGG - chr5_2:48626573-48626592 Msa0773590:three_prime_UTR 40.0%
GTTGTTCTTGTTCCTTCTGA+TGG - chr5_2:48626604-48626623 Msa0773590:three_prime_UTR 40.0%
! TGATTGGTCAATTGGATGGT+TGG - chr5_2:48626660-48626679 Msa0773590:three_prime_UTR 40.0%
TCATCATCACTTGGAAAACC+AGG + chr5_2:48626697-48626716 None:intergenic 40.0%
!!! GCAGTTTTGGTTCCTTGTTA+TGG - chr5_2:48626733-48626752 Msa0773590:CDS 40.0%
AGCAACTTACTCAATGGTGT+TGG - chr5_2:48626790-48626809 Msa0773590:intron 40.0%
TATTGACAATGTGGAGGACT+GGG + chr5_2:48626999-48627018 None:intergenic 40.0%
ATATTGACAATGTGGAGGAC+TGG + chr5_2:48627000-48627019 None:intergenic 40.0%
TCCCTATAAATACCAACCGA+GGG - chr5_2:48627120-48627139 Msa0773590:intron 40.0%
! TCCCTCGGTTGGTATTTATA+GGG + chr5_2:48627124-48627143 None:intergenic 40.0%
TATAAATACCAACCGAGGGA+CGG - chr5_2:48627124-48627143 Msa0773590:intron 40.0%
AGTTAATCAATTCCGTCCCT+CGG + chr5_2:48627139-48627158 None:intergenic 40.0%
GGAGCAAATGCTCAAATTGT+AGG + chr5_2:48627223-48627242 None:intergenic 40.0%
AGCATTTGCTCCCTTGAATT+GGG - chr5_2:48627231-48627250 Msa0773590:intron 40.0%
CAACAGTTCAACCCAATTCA+AGG + chr5_2:48627245-48627264 None:intergenic 40.0%
!! TGTCAGTGGTTAATTTGTCG+GGG - chr5_2:48627457-48627476 Msa0773590:intron 40.0%
AATGGTGGTTGGAACATTGA+AGG + chr5_2:48627538-48627557 None:intergenic 40.0%
TCAATGTTCCAACCACCATT+AGG - chr5_2:48627538-48627557 Msa0773590:intron 40.0%
! ATGAAAGTGTAGCCTAATGG+TGG + chr5_2:48627553-48627572 None:intergenic 40.0%
AGAAGCTATGTATGATCGAG+GGG - chr5_2:48627687-48627706 Msa0773590:intron 40.0%
CGTGTCTTGAACATAATCGA+AGG - chr5_2:48627715-48627734 Msa0773590:intron 40.0%
GCGTCATTTAAGCATACCTT+AGG - chr5_2:48627745-48627764 Msa0773590:intron 40.0%
! CTGTAGTCTTGAAAGATAGG+CGG - chr5_2:48627812-48627831 Msa0773590:intron 40.0%
TGACAATGTCTTCTCCTCAT+AGG + chr5_2:48628229-48628248 None:intergenic 40.0%
TCGACGTAAATAAATGTCGG+TGG - chr5_2:48626363-48626382 Msa0773590:three_prime_UTR 40.0%
!!! GAAGTCCCTTTTGAGATTCT+TGG + chr5_2:48626436-48626455 None:intergenic 40.0%
AATGGAATAGTAGGGAAGAG+AGG - chr5_2:48626557-48626576 Msa0773590:three_prime_UTR 40.0%
AAGAGAGGAGGAAAGTAGAT+AGG - chr5_2:48626572-48626591 Msa0773590:three_prime_UTR 40.0%
AGAGAGGAGGAAAGTAGATA+GGG - chr5_2:48626573-48626592 Msa0773590:three_prime_UTR 40.0%
GTTGTTCTTGTTCCTTCTGA+TGG - chr5_2:48626604-48626623 Msa0773590:three_prime_UTR 40.0%
! TGATTGGTCAATTGGATGGT+TGG - chr5_2:48626660-48626679 Msa0773590:three_prime_UTR 40.0%
TCATCATCACTTGGAAAACC+AGG + chr5_2:48626697-48626716 None:intergenic 40.0%
!!! GCAGTTTTGGTTCCTTGTTA+TGG - chr5_2:48626733-48626752 Msa0773590:CDS 40.0%
AGCAACTTACTCAATGGTGT+TGG - chr5_2:48626790-48626809 Msa0773590:intron 40.0%
TATTGACAATGTGGAGGACT+GGG + chr5_2:48626999-48627018 None:intergenic 40.0%
ATATTGACAATGTGGAGGAC+TGG + chr5_2:48627000-48627019 None:intergenic 40.0%
TCCCTATAAATACCAACCGA+GGG - chr5_2:48627120-48627139 Msa0773590:intron 40.0%
! TCCCTCGGTTGGTATTTATA+GGG + chr5_2:48627124-48627143 None:intergenic 40.0%
TATAAATACCAACCGAGGGA+CGG - chr5_2:48627124-48627143 Msa0773590:intron 40.0%
AGTTAATCAATTCCGTCCCT+CGG + chr5_2:48627139-48627158 None:intergenic 40.0%
GGAGCAAATGCTCAAATTGT+AGG + chr5_2:48627223-48627242 None:intergenic 40.0%
AGCATTTGCTCCCTTGAATT+GGG - chr5_2:48627231-48627250 Msa0773590:intron 40.0%
CAACAGTTCAACCCAATTCA+AGG + chr5_2:48627245-48627264 None:intergenic 40.0%
!! TGTCAGTGGTTAATTTGTCG+GGG - chr5_2:48627457-48627476 Msa0773590:intron 40.0%
AATGGTGGTTGGAACATTGA+AGG + chr5_2:48627538-48627557 None:intergenic 40.0%
TCAATGTTCCAACCACCATT+AGG - chr5_2:48627538-48627557 Msa0773590:intron 40.0%
! ATGAAAGTGTAGCCTAATGG+TGG + chr5_2:48627553-48627572 None:intergenic 40.0%
AGAAGCTATGTATGATCGAG+GGG - chr5_2:48627687-48627706 Msa0773590:intron 40.0%
CGTGTCTTGAACATAATCGA+AGG - chr5_2:48627715-48627734 Msa0773590:intron 40.0%
GCGTCATTTAAGCATACCTT+AGG - chr5_2:48627745-48627764 Msa0773590:intron 40.0%
! CTGTAGTCTTGAAAGATAGG+CGG - chr5_2:48627812-48627831 Msa0773590:intron 40.0%
TGACAATGTCTTCTCCTCAT+AGG + chr5_2:48628229-48628248 None:intergenic 40.0%
TGGCATTCACCAATCTCTCA+TGG - chr5_2:48626383-48626402 Msa0773590:three_prime_UTR 45.0%
CATTCACCAATCTCTCATGG+TGG - chr5_2:48626386-48626405 Msa0773590:three_prime_UTR 45.0%
CCATAACCACCATGAGAGAT+TGG + chr5_2:48626395-48626414 None:intergenic 45.0%
CCAATCTCTCATGGTGGTTA+TGG - chr5_2:48626392-48626411 Msa0773590:three_prime_UTR 45.0%
CCTATGTTTGCTTGCACCAA+AGG + chr5_2:48626511-48626530 None:intergenic 45.0%
! CCTTTGGTGCAAGCAAACAT+AGG - chr5_2:48626508-48626527 Msa0773590:three_prime_UTR 45.0%
GTTCTTGTTCCTTCTGATGG+TGG - chr5_2:48626607-48626626 Msa0773590:three_prime_UTR 45.0%
GAAACACATCCACCATCAGA+AGG + chr5_2:48626619-48626638 None:intergenic 45.0%
!! TCTGATGGTGGATGTGTTTC+TGG - chr5_2:48626619-48626638 Msa0773590:three_prime_UTR 45.0%
!! TGGTGGATGTGTTTCTGGTT+CGG - chr5_2:48626624-48626643 Msa0773590:three_prime_UTR 45.0%
CGGAATCCGATGATTCTGAT+TGG - chr5_2:48626644-48626663 Msa0773590:three_prime_UTR 45.0%
ATTGGATGGTTGGAACCTCA+TGG - chr5_2:48626670-48626689 Msa0773590:three_prime_UTR 45.0%
GTCCCTATAAATACCAACCG+AGG - chr5_2:48627119-48627138 Msa0773590:intron 45.0%
! GTCCCTCGGTTGGTATTTAT+AGG + chr5_2:48627125-48627144 None:intergenic 45.0%
GAGCATTTGCTCCCTTGAAT+TGG - chr5_2:48627230-48627249 Msa0773590:intron 45.0%
AGCATACTTCAATGGAGTGG+AGG + chr5_2:48627399-48627418 None:intergenic 45.0%
!! GGTTAATTTGTCGGGGAAAG+AGG - chr5_2:48627464-48627483 Msa0773590:intron 45.0%
AAGTGTAGCCTAATGGTGGT+TGG + chr5_2:48627549-48627568 None:intergenic 45.0%
TGGCATTCACCAATCTCTCA+TGG - chr5_2:48626383-48626402 Msa0773590:three_prime_UTR 45.0%
CATTCACCAATCTCTCATGG+TGG - chr5_2:48626386-48626405 Msa0773590:three_prime_UTR 45.0%
CCATAACCACCATGAGAGAT+TGG + chr5_2:48626395-48626414 None:intergenic 45.0%
CCAATCTCTCATGGTGGTTA+TGG - chr5_2:48626392-48626411 Msa0773590:three_prime_UTR 45.0%
CCTATGTTTGCTTGCACCAA+AGG + chr5_2:48626511-48626530 None:intergenic 45.0%
! CCTTTGGTGCAAGCAAACAT+AGG - chr5_2:48626508-48626527 Msa0773590:three_prime_UTR 45.0%
GTTCTTGTTCCTTCTGATGG+TGG - chr5_2:48626607-48626626 Msa0773590:three_prime_UTR 45.0%
GAAACACATCCACCATCAGA+AGG + chr5_2:48626619-48626638 None:intergenic 45.0%
!! TCTGATGGTGGATGTGTTTC+TGG - chr5_2:48626619-48626638 Msa0773590:three_prime_UTR 45.0%
!! TGGTGGATGTGTTTCTGGTT+CGG - chr5_2:48626624-48626643 Msa0773590:three_prime_UTR 45.0%
CGGAATCCGATGATTCTGAT+TGG - chr5_2:48626644-48626663 Msa0773590:three_prime_UTR 45.0%
ATTGGATGGTTGGAACCTCA+TGG - chr5_2:48626670-48626689 Msa0773590:three_prime_UTR 45.0%
GTCCCTATAAATACCAACCG+AGG - chr5_2:48627119-48627138 Msa0773590:intron 45.0%
! GTCCCTCGGTTGGTATTTAT+AGG + chr5_2:48627125-48627144 None:intergenic 45.0%
GAGCATTTGCTCCCTTGAAT+TGG - chr5_2:48627230-48627249 Msa0773590:intron 45.0%
AGCATACTTCAATGGAGTGG+AGG + chr5_2:48627399-48627418 None:intergenic 45.0%
!! GGTTAATTTGTCGGGGAAAG+AGG - chr5_2:48627464-48627483 Msa0773590:intron 45.0%
AAGTGTAGCCTAATGGTGGT+TGG + chr5_2:48627549-48627568 None:intergenic 45.0%
!!! TTTATCTTTTTTAAAAAATT+AGG - chr5_2:48627359-48627378 Msa0773590:intron 5.0%
!!! TTATCTTTTTTAAAAAATTA+GGG - chr5_2:48627360-48627379 Msa0773590:intron 5.0%
!!! TTTATCTTTTTTAAAAAATT+AGG - chr5_2:48627359-48627378 Msa0773590:intron 5.0%
!!! TTATCTTTTTTAAAAAATTA+GGG - chr5_2:48627360-48627379 Msa0773590:intron 5.0%
CTCTCATGGTGGTTATGGAG+TGG - chr5_2:48626397-48626416 Msa0773590:three_prime_UTR 50.0%
GGAATAGTAGGGAAGAGAGG+AGG - chr5_2:48626560-48626579 Msa0773590:three_prime_UTR 50.0%
CTTGGAAAACCAGGTCCATG+AGG + chr5_2:48626688-48626707 None:intergenic 50.0%
AATCAATTCCGTCCCTCGGT+TGG + chr5_2:48627135-48627154 None:intergenic 50.0%
CTCTCATGGTGGTTATGGAG+TGG - chr5_2:48626397-48626416 Msa0773590:three_prime_UTR 50.0%
GGAATAGTAGGGAAGAGAGG+AGG - chr5_2:48626560-48626579 Msa0773590:three_prime_UTR 50.0%
CTTGGAAAACCAGGTCCATG+AGG + chr5_2:48626688-48626707 None:intergenic 50.0%
AATCAATTCCGTCCCTCGGT+TGG + chr5_2:48627135-48627154 None:intergenic 50.0%
TGGTTGGAACCTCATGGACC+TGG - chr5_2:48626676-48626695 Msa0773590:three_prime_UTR 55.0%
TGGTTGGAACCTCATGGACC+TGG - chr5_2:48626676-48626695 Msa0773590:three_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 48626252 48628529 48626252 ID=Msa0773590;Name=Msa0773590
chr5_2 mRNA 48626252 48628529 48626252 ID=Msa0773590-mRNA-1;Parent=Msa0773590;Name=Msa0773590-mRNA-1;_AED=0.00;_eAED=0.00;_QI=124|1|1|1|1|1|2|471|170
chr5_2 exon 48626252 48626772 48626252 ID=Msa0773590-mRNA-1:exon:14551;Parent=Msa0773590-mRNA-1
chr5_2 exon 48627943 48628529 48627943 ID=Msa0773590-mRNA-1:exon:14550;Parent=Msa0773590-mRNA-1
chr5_2 five_prime_UTR 48628406 48628529 48628406 ID=Msa0773590-mRNA-1:five_prime_utr;Parent=Msa0773590-mRNA-1
chr5_2 CDS 48627943 48628405 48627943 ID=Msa0773590-mRNA-1:cds;Parent=Msa0773590-mRNA-1
chr5_2 CDS 48626723 48626772 48626723 ID=Msa0773590-mRNA-1:cds;Parent=Msa0773590-mRNA-1
chr5_2 three_prime_UTR 48626252 48626722 48626252 ID=Msa0773590-mRNA-1:three_prime_utr;Parent=Msa0773590-mRNA-1
Gene Sequence

>Msa0773590

ATGTCGGTGGCATTCACCAATCTCTCATGGTGGTTATGGAGTGGAAAACATCAAGAACCAAGAATCTCAAAAGGGACTTCAATAAATTCTTCAACAGATTTGAACATGTTGGAATCTGAGGTAATGAGATTTCCTTTGGTGCAAGCAAACATAGGATCATCATCAAGAAAGGTGAAGAGAAAATGGAATAGTAGGGAAGAGAGGAGGAAAGTAGATAGGGAATATGATGTTGTTCTTGTTCCTTCTGATGGTGGATGTGTTTCTGGTTCGGAATCCGATGATTCTGATTGGTCAATTGGATGGTTGGAACCTCATGGACCTGGTTTTCCAAGTGATGATGAAACTGATAATAGTTTTGCAGTTTTGGTTCCTTGTTATGGAAGAGATTATGGTAGAATTGAAGAAGATACTAAAAGCAACTTACTCAATGGTGTTGGACATTTTTTAGATAGTTATTCTGATGAAAGCAAGAAATATGTGGAAAACTGGCTATCTTCTATTCGAAATACCTGA

Protein sequence

>Msa0773590

MSVAFTNLSWWLWSGKHQEPRISKGTSINSSTDLNMLESEVMRFPLVQANIGSSSRKVKRKWNSREERRKVDREYDVVLVPSDGGCVSGSESDDSDWSIGWLEPHGPGFPSDDETDNSFAVLVPCYGRDYGRIEEDTKSNLLNGVGHFLDSYSDESKKYVENWLSSIRNT*