AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0104800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0104800 MtrunA17_Chr1g0159571 93.013 229 15 1 1 229 1 228 6.18e-145 407
Msa0104800 MtrunA17_Chr3g0125561 38.208 212 99 8 1 199 31 223 1.18e-23 97.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0104800 AT1G76980.1 43.103 174 78 7 49 204 28 198 8.61e-28 108
Msa0104800 AT1G76980.2 43.103 174 78 7 49 204 28 198 1.63e-27 107
Msa0104800 AT1G21390.1 38.342 193 88 6 33 199 5 192 7.55e-26 103

Find 51 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTATGTGTTCTCCACCTTTA+TGG 0.164256 1_3:-12969904 Msa0104800:CDS
TTAGATGATCCCAAAGAAAT+TGG 0.202956 1_3:+12969590 None:intergenic
TGATAAGAAGAAAGAGTTAT+TGG 0.226827 1_3:-12969561 Msa0104800:CDS
AAGAGGTCAAAGAGAGTTAA+TGG 0.266398 1_3:-12969816 Msa0104800:CDS
ATGGCTTGTGTCTTTGATTC+AGG 0.274722 1_3:+12969842 None:intergenic
GTAAGTTCATAGCTTGATTC+TGG 0.277190 1_3:+12969776 None:intergenic
AATTAGGGCTAGTAGAAATA+TGG 0.334807 1_3:-12969660 Msa0104800:CDS
TTACTCTTTGTTGTCCATAA+AGG 0.348229 1_3:+12969890 None:intergenic
CATGGATTGTGACGTTCCTT+TGG 0.356295 1_3:-12965762 Msa0104800:CDS
TGTATTCTATCATCAGAAAC+TGG 0.389778 1_3:+12970004 None:intergenic
CTCTCTTTGACCTCTTTCAA+TGG 0.402619 1_3:+12969823 None:intergenic
TCAAAGAGAGTTAATGGAAA+TGG 0.417465 1_3:-12969810 Msa0104800:CDS
GGTAACACTATTGTTATTGT+TGG 0.418413 1_3:+12969967 None:intergenic
TTCTGATGGATCTGTTAGTA+AGG 0.426899 1_3:-12969489 Msa0104800:CDS
GGATTGGTGGAAGAAGAAAC+TGG 0.436996 1_3:-12969468 Msa0104800:CDS
ACATGAATACAAAGCTTTGA+AGG 0.444237 1_3:+12965687 None:intergenic
AGTGGTAGCATCAAAAGATA+TGG 0.478211 1_3:-12969386 Msa0104800:CDS
AAGAAATTGTGGGTTGGTAA+TGG 0.479830 1_3:+12970029 None:intergenic
TACTGATCGTGGAGATATCA+TGG 0.480452 1_3:-12965780 Msa0104800:CDS
CTCTTTGTTGTCCATAAAGG+TGG 0.488907 1_3:+12969893 None:intergenic
CCAAGAGCATCTGTTTCTGA+TGG 0.489074 1_3:-12969503 Msa0104800:CDS
ACTCCTGCTGCTACAACTAC+TGG 0.490793 1_3:+12969352 None:intergenic
TTTGTATTCATGTCAGAGCT+TGG 0.495946 1_3:-12965677 Msa0104800:CDS
AGAAACTGGAAAAGAAATTG+TGG 0.502575 1_3:+12970018 None:intergenic
GAACCAGTAGTTGTAGCAGC+AGG 0.516769 1_3:-12969355 Msa0104800:CDS
GATCTGTTAGTAAGGATTGG+TGG 0.520890 1_3:-12969481 Msa0104800:CDS
TAAAAGTAGTAGTAATTCAA+AGG 0.523482 1_3:-12969531 Msa0104800:CDS
CACCTTTCAATGTGTTGTAG+TGG 0.525522 1_3:-12970224 Msa0104800:five_prime_UTR
GAAACTGGAAAAGAAATTGT+GGG 0.525639 1_3:+12970019 None:intergenic
AAGACACAAGCCATTGAAAG+AGG 0.538043 1_3:-12969833 Msa0104800:CDS
CCATCAGAAACAGATGCTCT+TGG 0.545084 1_3:+12969503 None:intergenic
AACCACTACAACACATTGAA+AGG 0.548137 1_3:+12970222 None:intergenic
GGGAGTAGTGGTTCAGAATG+TGG 0.556003 1_3:-12969446 Msa0104800:CDS
GCTTTGAAGGATCAAGTCAA+TGG 0.558920 1_3:+12965700 None:intergenic
CTGGAAAAGAAATTGTGGGT+TGG 0.579799 1_3:+12970023 None:intergenic
GTAGCAGCAGGAGTAATAGC+AGG 0.581217 1_3:-12969343 Msa0104800:intron
AGAAGAATATTGACAGTGGA+GGG 0.588979 1_3:-12969634 Msa0104800:CDS
ATGGATCTGTTAGTAAGGAT+TGG 0.591287 1_3:-12969484 Msa0104800:CDS
GGTTGGTAATGGTATCTTCG+TGG 0.594866 1_3:+12970040 None:intergenic
AAGAAGAAACTGGGGAGTAG+TGG 0.594902 1_3:-12969458 Msa0104800:CDS
GATTGGTGGAAGAAGAAACT+GGG 0.596215 1_3:-12969467 Msa0104800:CDS
AAGAAGAATATTGACAGTGG+AGG 0.610321 1_3:-12969635 Msa0104800:CDS
AAAGGTGGAGAACACATACC+AGG 0.623685 1_3:+12969908 None:intergenic
GATAAGAAGAATATTGACAG+TGG 0.625867 1_3:-12969638 Msa0104800:CDS
TACTTTGAAAGATCTTGTTG+AGG 0.634719 1_3:-12969756 Msa0104800:CDS
AGTGGTGTATCTAGCATGAG+TGG 0.636022 1_3:-12969404 Msa0104800:CDS
ATTGGTGGAAGAAGAAACTG+GGG 0.670609 1_3:-12969466 Msa0104800:CDS
GGTCATGTTGAAGATGAACC+TGG 0.675151 1_3:-12969926 Msa0104800:CDS
AGTAGTGGTTCAGAATGTGG+AGG 0.678513 1_3:-12969443 Msa0104800:CDS
TCATGTTGAAGAAAATAACA+AGG 0.690119 1_3:-12969729 Msa0104800:CDS
GGTGATCAAAGTGATCATAG+TGG 0.721338 1_3:-12969422 Msa0104800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTAATTATAATTATA+TGG + chr1_3:12966641-12966660 None:intergenic 0.0%
!!! TTATATATTTTTAAAATATT+TGG - chr1_3:12969259-12969278 Msa0104800:intron 0.0%
!!! TATATATTTTTAAAATATTT+GGG - chr1_3:12969260-12969279 Msa0104800:intron 0.0%
!!! AATAAACACATTATTTTTAA+TGG - chr1_3:12967213-12967232 Msa0104800:intron 10.0%
!!! ATAAACACATTATTTTTAAT+GGG - chr1_3:12967214-12967233 Msa0104800:intron 10.0%
!! TTTAATAAACTTAATTGATT+TGG - chr1_3:12968011-12968030 Msa0104800:intron 10.0%
!! GATACAAATTAATTAATTTA+GGG - chr1_3:12969017-12969036 Msa0104800:intron 10.0%
!! TTTGTATATAAATGTTTGAA+TGG - chr1_3:12966679-12966698 Msa0104800:intron 15.0%
!!! ACAAATTTAGTTATTTTTCA+TGG + chr1_3:12967609-12967628 None:intergenic 15.0%
!! ATAACTAAATTTGTGTTAAT+TGG - chr1_3:12967615-12967634 Msa0104800:intron 15.0%
!! AAAATTACATTTATAGTCAT+TGG - chr1_3:12968074-12968093 Msa0104800:intron 15.0%
!! TAAAATTATTATCAGTGTAT+CGG - chr1_3:12968425-12968444 Msa0104800:intron 15.0%
!!! CAATAATCATGATAAATTTT+TGG - chr1_3:12968544-12968563 Msa0104800:intron 15.0%
!!! TTAGTATATTTGAAATACTT+TGG + chr1_3:12968832-12968851 None:intergenic 15.0%
!! TCAAATATACTAAAGTTATT+TGG - chr1_3:12968839-12968858 Msa0104800:intron 15.0%
!! CGATACAAATTAATTAATTT+AGG - chr1_3:12969016-12969035 Msa0104800:intron 15.0%
!! TCTAAGTTAAAACATATTAA+AGG - chr1_3:12969475-12969494 Msa0104800:CDS 15.0%
!!! ATGAAGCTTTTTTAATTTCT+TGG + chr1_3:12965696-12965715 None:intergenic 20.0%
!!! TTTTGAAAGATTTTGAAAGA+GGG + chr1_3:12965793-12965812 None:intergenic 20.0%
!!! AATGATTTTTCCAATTTCTT+TGG - chr1_3:12966343-12966362 Msa0104800:intron 20.0%
!!! ATGATTTTTCCAATTTCTTT+GGG - chr1_3:12966344-12966363 Msa0104800:intron 20.0%
!! TAAAAGTAGTAGTAATTCAA+AGG - chr1_3:12966412-12966431 Msa0104800:intron 20.0%
!!! CTATTGTAAGTTTTAGATTT+TGG - chr1_3:12966736-12966755 Msa0104800:intron 20.0%
!!! GTATGTGATTAGATTTTATT+GGG + chr1_3:12966947-12966966 None:intergenic 20.0%
!!! AGTATGTGATTAGATTTTAT+TGG + chr1_3:12966948-12966967 None:intergenic 20.0%
!!! TCATCAAGATTTTTACATTT+TGG - chr1_3:12967026-12967045 Msa0104800:intron 20.0%
!! ACTCTCAAAAAGATAATTTA+TGG - chr1_3:12967175-12967194 Msa0104800:intron 20.0%
!! AAAATAATGTGTTTATTAGC+TGG + chr1_3:12967210-12967229 None:intergenic 20.0%
!!! TTATTTTTAATGGGACTAAT+TGG - chr1_3:12967223-12967242 Msa0104800:intron 20.0%
!!! TAAATCAAGTCAAATTTTCA+AGG - chr1_3:12967403-12967422 Msa0104800:intron 20.0%
!!! GTTTTGTTTGTTTGTTTATT+AGG - chr1_3:12967466-12967485 Msa0104800:intron 20.0%
!!! ACAAATTGAGTTATTTTTCA+TGG + chr1_3:12967682-12967701 None:intergenic 20.0%
!! TAGTATACAATAGTGAAATA+AGG - chr1_3:12967784-12967803 Msa0104800:intron 20.0%
!! GTTGAAAAATATCATTCAAA+AGG + chr1_3:12967820-12967839 None:intergenic 20.0%
!! AGTATTCATCAAAATTTCAT+AGG - chr1_3:12967852-12967871 Msa0104800:intron 20.0%
!! TGAATCTCATATAAATTTGA+TGG + chr1_3:12967880-12967899 None:intergenic 20.0%
!!! AGTACACTTTTTTCATTTAT+GGG + chr1_3:12967934-12967953 None:intergenic 20.0%
!!! AAGTACACTTTTTTCATTTA+TGG + chr1_3:12967935-12967954 None:intergenic 20.0%
!!! TGAAATTTGTTTGTTACTAT+TGG + chr1_3:12968481-12968500 None:intergenic 20.0%
!! GAATTCTCATAAAAAAAAAG+TGG + chr1_3:12968777-12968796 None:intergenic 20.0%
!! AAGTATGCAAATATTGTATT+TGG - chr1_3:12968890-12968909 Msa0104800:intron 20.0%
!! TAATCCTATTTAATTAGTGA+TGG + chr1_3:12969124-12969143 None:intergenic 20.0%
!! ATCACTAATTAAATAGGATT+AGG - chr1_3:12969123-12969142 Msa0104800:intron 20.0%
!! TAATCAAGTTTGATTATAGT+GGG + chr1_3:12969602-12969621 None:intergenic 20.0%
!!! AACACTTAATGTCTTTTTAT+AGG - chr1_3:12969911-12969930 Msa0104800:CDS 20.0%
!!! GTTTTGAAAGATTTTGAAAG+AGG + chr1_3:12965794-12965813 None:intergenic 25.0%
!! ATGAGTAAGATTTTTGTGTT+AGG + chr1_3:12965816-12965835 None:intergenic 25.0%
! TCATGTTGAAGAAAATAACA+AGG - chr1_3:12966214-12966233 Msa0104800:intron 25.0%
! TGATAAGAAGAAAGAGTTAT+TGG - chr1_3:12966382-12966401 Msa0104800:intron 25.0%
!! TGGTAATTAAGAAGCTTTTA+AGG - chr1_3:12966761-12966780 Msa0104800:intron 25.0%
!! AATTTTCTCTGAATTTCACT+CGG - chr1_3:12966974-12966993 Msa0104800:intron 25.0%
!! TTTTACATTTTGGATCAGTT+TGG - chr1_3:12967036-12967055 Msa0104800:intron 25.0%
! CTATTACTTTATCAATTTGG+TGG + chr1_3:12967348-12967367 None:intergenic 25.0%
! CACCAAATTGATAAAGTAAT+AGG - chr1_3:12967346-12967365 Msa0104800:intron 25.0%
! CTCCTATTACTTTATCAATT+TGG + chr1_3:12967351-12967370 None:intergenic 25.0%
!! AAAGTAATAGGAGTATATTG+TGG - chr1_3:12967358-12967377 Msa0104800:intron 25.0%
!! TTTTCTGATTAGGTACAAAA+TGG - chr1_3:12967509-12967528 Msa0104800:intron 25.0%
! GTATACTAACATAACATGTA+AGG + chr1_3:12967772-12967791 None:intergenic 25.0%
! TACTTGAAAATTTATGTGTG+TGG - chr1_3:12967950-12967969 Msa0104800:intron 25.0%
! GTAACAAACAAATTTCAGTT+TGG - chr1_3:12968484-12968503 Msa0104800:intron 25.0%
! ATTTGTGATCTTCTTATGAA+AGG + chr1_3:12968609-12968628 None:intergenic 25.0%
! AAATTCTATCAGAGAAGTAA+TGG - chr1_3:12968625-12968644 Msa0104800:intron 25.0%
!!! ATTTGAGCTTCTAGAATTTA+TGG - chr1_3:12968665-12968684 Msa0104800:intron 25.0%
! AGTTAAAACATATTAAAGGC+AGG - chr1_3:12969479-12969498 Msa0104800:CDS 25.0%
! GAAAAATCAACACTTTATCA+TGG - chr1_3:12969524-12969543 Msa0104800:CDS 25.0%
! GTAATCAAGTTTGATTATAG+TGG + chr1_3:12969603-12969622 None:intergenic 25.0%
! TCTTAATCATGTTGCATTAT+AGG + chr1_3:12969676-12969695 None:intergenic 25.0%
!! TAGAAAATTGATCAGAGTTT+TGG - chr1_3:12969852-12969871 Msa0104800:CDS 25.0%
! TTTATAGGAGATTTGAATAG+AGG - chr1_3:12969926-12969945 Msa0104800:CDS 25.0%
! TCAACAAAATTATCCTTAAG+AGG + chr1_3:12970022-12970041 None:intergenic 25.0%
GAAACTGGAAAAGAAATTGT+GGG + chr1_3:12965927-12965946 None:intergenic 30.0%
AGAAACTGGAAAAGAAATTG+TGG + chr1_3:12965928-12965947 None:intergenic 30.0%
TGTATTCTATCATCAGAAAC+TGG + chr1_3:12965942-12965961 None:intergenic 30.0%
! GGTAACACTATTGTTATTGT+TGG + chr1_3:12965979-12965998 None:intergenic 30.0%
ACCAAAAACTACAATCATCA+TGG - chr1_3:12965996-12966015 Msa0104800:intron 30.0%
! ACCATGATGATTGTAGTTTT+TGG + chr1_3:12966000-12966019 None:intergenic 30.0%
! TTACTCTTTGTTGTCCATAA+AGG + chr1_3:12966056-12966075 None:intergenic 30.0%
TCAAAGAGAGTTAATGGAAA+TGG - chr1_3:12966133-12966152 Msa0104800:intron 30.0%
! TACTTTGAAAGATCTTGTTG+AGG - chr1_3:12966187-12966206 Msa0104800:intron 30.0%
AAAAACACACGAAAAAGAGA+AGG - chr1_3:12966260-12966279 Msa0104800:intron 30.0%
ACGAAAAAGAGAAGGAATTA+GGG - chr1_3:12966268-12966287 Msa0104800:intron 30.0%
! AATTAGGGCTAGTAGAAATA+TGG - chr1_3:12966283-12966302 Msa0104800:intron 30.0%
GATAAGAAGAATATTGACAG+TGG - chr1_3:12966305-12966324 Msa0104800:intron 30.0%
TTAGATGATCCCAAAGAAAT+TGG + chr1_3:12966356-12966375 None:intergenic 30.0%
!!! GTAAGTTTTAGATTTTGGCA+TGG - chr1_3:12966741-12966760 Msa0104800:intron 30.0%
CATTGCTTTAACATTGTAGT+AGG - chr1_3:12967246-12967265 Msa0104800:intron 30.0%
ATGTTGGTCGATAAAGAAAA+AGG - chr1_3:12967436-12967455 Msa0104800:intron 30.0%
!! ATCATTCAAAAGGTGTTTAG+TGG + chr1_3:12967810-12967829 None:intergenic 30.0%
ACAATCATTTCAAAGATCTC+AGG + chr1_3:12968215-12968234 None:intergenic 30.0%
AGTGCTATAGTTATCTATGA+AGG - chr1_3:12968309-12968328 Msa0104800:intron 30.0%
TTTCATATGCTTGTGATTGT+CGG - chr1_3:12968514-12968533 Msa0104800:intron 30.0%
!! TAAATTTTTGGATGCAATGC+AGG - chr1_3:12968556-12968575 Msa0104800:intron 30.0%
GAGAGAAATCTAAATTCAAG+TGG - chr1_3:12968689-12968708 Msa0104800:intron 30.0%
TAAACTATCACATCTCAATC+TGG + chr1_3:12968947-12968966 None:intergenic 30.0%
! AATTCTGTTTAGGGTACATT+AGG + chr1_3:12968994-12969013 None:intergenic 30.0%
TGTATCGTCAATTCTGTTTA+GGG + chr1_3:12969003-12969022 None:intergenic 30.0%
TTGTATCGTCAATTCTGTTT+AGG + chr1_3:12969004-12969023 None:intergenic 30.0%
!!! TAGGGCAAAATTGTCATTTT+AGG - chr1_3:12969035-12969054 Msa0104800:intron 30.0%
TCTGCCATCACTAATTAAAT+AGG - chr1_3:12969117-12969136 Msa0104800:intron 30.0%
! GTAATTTGTCCTGCAAATAA+GGG + chr1_3:12969222-12969241 None:intergenic 30.0%
! TGTAATTTGTCCTGCAAATA+AGG + chr1_3:12969223-12969242 None:intergenic 30.0%
!! CACTAATAATTTTCAAGCCT+TGG - chr1_3:12969320-12969339 Msa0104800:intron 30.0%
AAGAAATTCTCAAACTACAC+AGG + chr1_3:12969362-12969381 None:intergenic 30.0%
! TTTTGGCATAGTTGAAAACA+TGG - chr1_3:12969869-12969888 Msa0104800:CDS 30.0%
ATCTGAAGAAAACTTCTCAA+GGG + chr1_3:12969987-12970006 None:intergenic 30.0%
AATCTGAAGAAAACTTCTCA+AGG + chr1_3:12969988-12970007 None:intergenic 30.0%
TTTCAAATCATTGCCTCTTA+AGG - chr1_3:12970006-12970025 Msa0104800:CDS 30.0%
GATCAATCTCAAATAAGCAA+AGG + chr1_3:12970061-12970080 None:intergenic 30.0%
AAGAAGACATGTTGCAAAAA+CGG + chr1_3:12970118-12970137 None:intergenic 30.0%
!! TGTCTTCTTTTAATTCACCA+AGG - chr1_3:12970129-12970148 Msa0104800:five_prime_UTR 30.0%
!!! TCAGTAGTACATTTTTTCCT+TGG + chr1_3:12970149-12970168 None:intergenic 30.0%
AAAAAATGTACTACTGATCG+TGG - chr1_3:12970152-12970171 Msa0104800:five_prime_UTR 30.0%
!! TCAGTTTTGTCTTTTTCCAA+AGG + chr1_3:12970200-12970219 None:intergenic 30.0%
! ACATGAATACAAAGCTTTGA+AGG + chr1_3:12970259-12970278 None:intergenic 30.0%
AACCACTACAACACATTGAA+AGG + chr1_3:12965724-12965743 None:intergenic 35.0%
!! AGATTTTGAAAGAGGGTGAA+GGG + chr1_3:12965786-12965805 None:intergenic 35.0%
!! AAGATTTTGAAAGAGGGTGA+AGG + chr1_3:12965787-12965806 None:intergenic 35.0%
!! AAGAAATTGTGGGTTGGTAA+TGG + chr1_3:12965917-12965936 None:intergenic 35.0%
AAGAGGTCAAAGAGAGTTAA+TGG - chr1_3:12966127-12966146 Msa0104800:intron 35.0%
GTAAGTTCATAGCTTGATTC+TGG + chr1_3:12966170-12966189 None:intergenic 35.0%
CACGAAAAAGAGAAGGAATT+AGG - chr1_3:12966267-12966286 Msa0104800:intron 35.0%
AAGAAGAATATTGACAGTGG+AGG - chr1_3:12966308-12966327 Msa0104800:intron 35.0%
AGAAGAATATTGACAGTGGA+GGG - chr1_3:12966309-12966328 Msa0104800:intron 35.0%
! TTCTGATGGATCTGTTAGTA+AGG - chr1_3:12966454-12966473 Msa0104800:intron 35.0%
ATGGATCTGTTAGTAAGGAT+TGG - chr1_3:12966459-12966478 Msa0104800:intron 35.0%
AGTGGTAGCATCAAAAGATA+TGG - chr1_3:12966557-12966576 Msa0104800:intron 35.0%
! CATTTTGGATCAGTTTGGAT+TGG - chr1_3:12967041-12967060 Msa0104800:intron 35.0%
ATCCACTTATCAATCAGCAT+TGG + chr1_3:12967272-12967291 None:intergenic 35.0%
AACAACTAAACATGTGACAG+AGG - chr1_3:12967295-12967314 Msa0104800:intron 35.0%
!! AGGTTAAAGCTAGCCTTAAA+AGG - chr1_3:12967315-12967334 Msa0104800:intron 35.0%
! TCTGTGACACTTTTCTGATT+AGG - chr1_3:12967499-12967518 Msa0104800:intron 35.0%
AGGAAAGACACTCTTTAGAT+TGG - chr1_3:12968329-12968348 Msa0104800:intron 35.0%
TCTTTAGATTGGATGTATCC+TGG - chr1_3:12968340-12968359 Msa0104800:intron 35.0%
AAATGAGTACTAGCAGATGT+TGG - chr1_3:12968583-12968602 Msa0104800:intron 35.0%
TTCTATCAGAGAAGTAATGG+TGG - chr1_3:12968628-12968647 Msa0104800:intron 35.0%
TTAGAATGTGTTTGGTTGAG+TGG + chr1_3:12968748-12968767 None:intergenic 35.0%
!!! GGCAAAATTGTCATTTTAGG+TGG - chr1_3:12969038-12969057 Msa0104800:intron 35.0%
AAATATTTGGGCCAACAGAT+TGG - chr1_3:12969272-12969291 Msa0104800:intron 35.0%
! TTGTCTTTTTCTCACCTTCA+AGG + chr1_3:12969422-12969441 None:intergenic 35.0%
AAGGTGAGAAAAAGACAAGA+AGG - chr1_3:12969424-12969443 Msa0104800:CDS 35.0%
AGGTGAGAAAAAGACAAGAA+GGG - chr1_3:12969425-12969444 Msa0104800:CDS 35.0%
AAACGTAATTCCGAATTGTG+CGG + chr1_3:12969554-12969573 None:intergenic 35.0%
! TTATAGTGGGAAAATCTCTC+AGG + chr1_3:12969589-12969608 None:intergenic 35.0%
! GACTTTTACGAAAGACAAAG+TGG + chr1_3:12970092-12970111 None:intergenic 35.0%
TTTGTATTCATGTCAGAGCT+TGG - chr1_3:12970266-12970285 Msa0104800:five_prime_UTR 35.0%
CACCTTTCAATGTGTTGTAG+TGG - chr1_3:12965719-12965738 Msa0104800:CDS 40.0%
CTGGAAAAGAAATTGTGGGT+TGG + chr1_3:12965923-12965942 None:intergenic 40.0%
GTATGTGTTCTCCACCTTTA+TGG - chr1_3:12966039-12966058 Msa0104800:intron 40.0%
! CTCTTTGTTGTCCATAAAGG+TGG + chr1_3:12966053-12966072 None:intergenic 40.0%
! ATGGCTTGTGTCTTTGATTC+AGG + chr1_3:12966104-12966123 None:intergenic 40.0%
AAGACACAAGCCATTGAAAG+AGG - chr1_3:12966110-12966129 Msa0104800:intron 40.0%
CTCTCTTTGACCTCTTTCAA+TGG + chr1_3:12966123-12966142 None:intergenic 40.0%
GATCTGTTAGTAAGGATTGG+TGG - chr1_3:12966462-12966481 Msa0104800:intron 40.0%
GATTGGTGGAAGAAGAAACT+GGG - chr1_3:12966476-12966495 Msa0104800:intron 40.0%
ATTGGTGGAAGAAGAAACTG+GGG - chr1_3:12966477-12966496 Msa0104800:intron 40.0%
GGTGATCAAAGTGATCATAG+TGG - chr1_3:12966521-12966540 Msa0104800:intron 40.0%
! AAAGCGAAACATGACTAGCT+GGG + chr1_3:12966881-12966900 None:intergenic 40.0%
! GTCATGTTTCGCTTTGAGTT+TGG - chr1_3:12966886-12966905 Msa0104800:intron 40.0%
!! TGGTGGTGTCTTTCCTTTTA+AGG + chr1_3:12967331-12967350 None:intergenic 40.0%
ATTGATGCATGTCTAACACC+AGG + chr1_3:12968361-12968380 None:intergenic 40.0%
GGCAACACTTAGAATGTGTT+TGG + chr1_3:12968756-12968775 None:intergenic 40.0%
! CTGAAAAAGACACGTTGACT+CGG + chr1_3:12969070-12969089 None:intergenic 40.0%
! AGGGTCATTTGAGTTTCTCT+CGG + chr1_3:12969203-12969222 None:intergenic 40.0%
! CTCAAATGACCCTTATTTGC+AGG - chr1_3:12969210-12969229 Msa0104800:intron 40.0%
GGATCAGGCAAGCTAATTAA+TGG - chr1_3:12969293-12969312 Msa0104800:intron 40.0%
TCAGGCAAGCTAATTAATGG+TGG - chr1_3:12969296-12969315 Msa0104800:intron 40.0%
CAGGCAAGCTAATTAATGGT+GGG - chr1_3:12969297-12969316 Msa0104800:intron 40.0%
GATGGAGCACAAAAAAGTCA+GGG + chr1_3:12969391-12969410 None:intergenic 40.0%
AGATGGAGCACAAAAAAGTC+AGG + chr1_3:12969392-12969411 None:intergenic 40.0%
! TCCATCTGATTTGACCTTGA+AGG - chr1_3:12969405-12969424 Msa0104800:CDS 40.0%
ACCTTCAAGGTCAAATCAGA+TGG + chr1_3:12969409-12969428 None:intergenic 40.0%
AGATTTCCTACGTCTCTTTG+AGG - chr1_3:12969646-12969665 Msa0104800:CDS 40.0%
TACTGATCGTGGAGATATCA+TGG - chr1_3:12970163-12970182 Msa0104800:five_prime_UTR 40.0%
!! GCTTTGAAGGATCAAGTCAA+TGG + chr1_3:12970246-12970265 None:intergenic 40.0%
!! GGTTGGTAATGGTATCTTCG+TGG + chr1_3:12965906-12965925 None:intergenic 45.0%
GGTCATGTTGAAGATGAACC+TGG - chr1_3:12966017-12966036 Msa0104800:intron 45.0%
AAAGGTGGAGAACACATACC+AGG + chr1_3:12966038-12966057 None:intergenic 45.0%
CCATCAGAAACAGATGCTCT+TGG + chr1_3:12966443-12966462 None:intergenic 45.0%
!! CCAAGAGCATCTGTTTCTGA+TGG - chr1_3:12966440-12966459 Msa0104800:intron 45.0%
! GGATTGGTGGAAGAAGAAAC+TGG - chr1_3:12966475-12966494 Msa0104800:intron 45.0%
AAGAAGAAACTGGGGAGTAG+TGG - chr1_3:12966485-12966504 Msa0104800:intron 45.0%
AGTAGTGGTTCAGAATGTGG+AGG - chr1_3:12966500-12966519 Msa0104800:intron 45.0%
AGTGGTGTATCTAGCATGAG+TGG - chr1_3:12966539-12966558 Msa0104800:intron 45.0%
! AAGCGAAACATGACTAGCTG+GGG + chr1_3:12966880-12966899 None:intergenic 45.0%
CAAAGCGAAACATGACTAGC+TGG + chr1_3:12966882-12966901 None:intergenic 45.0%
! GGCCAATGCTGATTGATAAG+TGG - chr1_3:12967267-12967286 Msa0104800:intron 45.0%
GTGTGTGGAGATTGTCTTGT+TGG - chr1_3:12967965-12967984 Msa0104800:intron 45.0%
!! CTATCTATGAAGCACCGACA+CGG + chr1_3:12968454-12968473 None:intergenic 45.0%
GAATGTGTTTGGTTGAGTGG+TGG + chr1_3:12968745-12968764 None:intergenic 45.0%
GGCAGATGTGATTAGTGATG+TGG + chr1_3:12969103-12969122 None:intergenic 45.0%
GCTTAGACTCAACTCAACCA+AGG + chr1_3:12969340-12969359 None:intergenic 45.0%
TCATGGTTCACCGCACAATT+CGG - chr1_3:12969541-12969560 Msa0104800:CDS 45.0%
GAAAATCTCTCAGGTGGGAA+GGG + chr1_3:12969580-12969599 None:intergenic 45.0%
AGTGGGAAAATCTCTCAGGT+GGG + chr1_3:12969585-12969604 None:intergenic 45.0%
TAGTGGGAAAATCTCTCAGG+TGG + chr1_3:12969586-12969605 None:intergenic 45.0%
GGAAATCCTCAAAGAGACGT+AGG + chr1_3:12969655-12969674 None:intergenic 45.0%
! CATGGATTGTGACGTTCCTT+TGG - chr1_3:12970181-12970200 Msa0104800:five_prime_UTR 45.0%
!!! TCTTTAAAAAAAAAAAAAAA+TGG - chr1_3:12967541-12967560 Msa0104800:intron 5.0%
!!! AAATTTTAATATTTTAGTTT+TGG + chr1_3:12969150-12969169 None:intergenic 5.0%
!! TAAAATATTAAAATTTATAG+TGG - chr1_3:12969154-12969173 Msa0104800:intron 5.0%
!! TTTAAAAATATATAAATTCA+AGG + chr1_3:12969254-12969273 None:intergenic 5.0%
GGGAGTAGTGGTTCAGAATG+TGG - chr1_3:12966497-12966516 Msa0104800:intron 50.0%
GAACCAGTAGTTGTAGCAGC+AGG - chr1_3:12966588-12966607 Msa0104800:intron 50.0%
ACTCCTGCTGCTACAACTAC+TGG + chr1_3:12966594-12966613 None:intergenic 50.0%
GTAGCAGCAGGAGTAATAGC+AGG - chr1_3:12966600-12966619 Msa0104800:intron 50.0%
CTCTGAATTTCACTCGGACG+CGG - chr1_3:12966980-12966999 Msa0104800:intron 50.0%
! CGCGGCTTTGTGACTAATCA+TGG - chr1_3:12966998-12967017 Msa0104800:intron 50.0%
TCAAGGCGTGCACTTCATGT+TGG - chr1_3:12967420-12967439 Msa0104800:intron 50.0%
TTGGGCCAACAGATTGGATC+AGG - chr1_3:12969278-12969297 Msa0104800:intron 50.0%
GCTTGCCTGATCCAATCTGT+TGG + chr1_3:12969286-12969305 None:intergenic 50.0%
GGAAAATCTCTCAGGTGGGA+AGG + chr1_3:12969581-12969600 None:intergenic 50.0%
! CAGTGTATCGGTCTCCGTGT+CGG - chr1_3:12968437-12968456 Msa0104800:intron 55.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 12965664 12970301 12965664 ID=Msa0104800;Name=Msa0104800
chr1_3 mRNA 12965664 12970301 12965664 ID=Msa0104800-mRNA-1;Parent=Msa0104800;Name=Msa0104800-mRNA-1;_AED=0.24;_eAED=0.24;_QI=230|0|0.5|0.5|1|1|2|0|292
chr1_3 exon 12965664 12965814 12965664 ID=Msa0104800-mRNA-1:exon:5068;Parent=Msa0104800-mRNA-1
chr1_3 exon 12969344 12970301 12969344 ID=Msa0104800-mRNA-1:exon:5067;Parent=Msa0104800-mRNA-1
chr1_3 five_prime_UTR 12970072 12970301 12970072 ID=Msa0104800-mRNA-1:five_prime_utr;Parent=Msa0104800-mRNA-1
chr1_3 CDS 12969344 12970071 12969344 ID=Msa0104800-mRNA-1:cds;Parent=Msa0104800-mRNA-1
chr1_3 CDS 12965664 12965814 12965664 ID=Msa0104800-mRNA-1:cds;Parent=Msa0104800-mRNA-1
Gene Sequence

>Msa0104800

ATGCTTGATCCACGAAGATACCATTACCAACCCACAATTTCTTTTCCAGTTTCTGATGATAGAATACAACAAAAAACTCATACCAACAATAACAATAGTGTTACCAAAAACTACAATCATCATGGTCATGTTGAAGATGAACCTGGTATGTGTTCTCCACCTTTATGGACAACAAAGAGTAAAAGCAACAACTATAGAAGTCTTTCACCTGAATCAAAGACACAAGCCATTGAAAGAGGTCAAAGAGAGTTAATGGAAATGGTTAAGAACATGCCAGAATCAAGCTATGAACTTACTTTGAAAGATCTTGTTGAGGAACATCATGTTGAAGAAAATAACAAGGTAAAAGAGAGAAATTTGAGCAACAAAAACACACGAAAAAGAGAAGGAATTAGGGCTAGTAGAAATATGGATAAGAAGAATATTGACAGTGGAGGGCTTTATTTGAAAATGATTTTTCCAATTTCTTTGGGATCATCTAAGAAACATGATAAGAAGAAAGAGTTATTGGTTAGTAATAAAAGTAGTAGTAATTCAAAGGTTTCACCAAGAGCATCTGTTTCTGATGGATCTGTTAGTAAGGATTGGTGGAAGAAGAAACTGGGGAGTAGTGGTTCAGAATGTGGAGGTGATCAAAGTGATCATAGTGGTGTATCTAGCATGAGTGGTAGCATCAAAAGATATGGTAGTAGCAGAACCAGTAGTTGTAGCAGCAGGAGTAATAGCAGGAAAAAATGTACTACTGATCGTGGAGATATCATGGATTGTGACGTTCCTTTGGAAAAAGACAAAACTGATCAGATGATCTTTAGAGCGTTGACCATTGACTTGATCCTTCAAAGCTTTGTATTCATGTCAGAGCTTGGCTACATAACTTGA

Protein sequence

>Msa0104800

MLDPRRYHYQPTISFPVSDDRIQQKTHTNNNNSVTKNYNHHGHVEDEPGMCSPPLWTTKSKSNNYRSLSPESKTQAIERGQRELMEMVKNMPESSYELTLKDLVEEHHVEENNKVKERNLSNKNTRKREGIRASRNMDKKNIDSGGLYLKMIFPISLGSSKKHDKKKELLVSNKSSSNSKVSPRASVSDGSVSKDWWKKKLGSSGSECGGDQSDHSGVSSMSGSIKRYGSSRTSSCSSRSNSRKKCTTDRGDIMDCDVPLEKDKTDQMIFRALTIDLILQSFVFMSELGYIT*