AlfalfaGEDB | Msa0394260

M. sativa cultivar zhongmu-4 / Msa0394260

KEGG: K10374
GO: GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006996 GO:0006997 GO:0008150 GO:0009504 GO:0009987 GO:0012505 GO:0016043 GO:0031967 GO:0031975 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046982 GO:0046983 GO:0071840
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0394260	XP_003598275.1	96.870	575	18	0	1	575	1	575	0.0	1119

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0394260	sp\|Q8GXA4\|WIP1_ARATH	33.669	496	216	18	62	550	75	464	1.60e-51	187

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0394260	G7J0C1	96.870	575	18	0	1	575	1	575	0.0	1119

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002560	Msa0394260	0.804031	2.625519e-49	-8.615850e-47
Msa0002680	Msa0394260	0.805980	1.027122e-49	-8.615850e-47
Msa0002710	Msa0394260	0.810247	1.267331e-50	-8.615850e-47
Msa0003220	Msa0394260	0.802874	4.561463e-49	-8.615850e-47
Msa0003300	Msa0394260	0.810024	1.415576e-50	-8.615850e-47
Msa0006110	Msa0394260	0.816830	4.516531e-52	-8.615850e-47
Msa0010770	Msa0394260	0.832007	1.208513e-55	-8.615850e-47
Msa0014570	Msa0394260	0.800914	1.152197e-48	-8.615850e-47
Msa0014710	Msa0394260	0.804856	1.767101e-49	-8.615850e-47
Msa0015120	Msa0394260	0.802822	4.674868e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0394260	MtrunA17_Chr3g0079781	96.696	575	18	1	1	575	1	574	0.0	1113
Msa0394260	MtrunA17_Chr8g0369251	45.522	268	131	6	311	575	94	349	9.71e-54	186

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0394260	AT4G26455.1	33.669	496	216	18	62	550	75	464	1.63e-52	187
Msa0394260	AT5G56210.1	33.575	551	295	23	40	575	15	509	2.57e-40	154
Msa0394260	AT3G13360.1	29.091	550	266	19	37	575	23	459	7.68e-32	129
Msa0394260	AT3G13360.2	29.091	550	266	19	37	575	82	518	1.62e-31	129

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Find 158 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGACACCTTGCCTATAGT+TGG	0.470804	3_2:-8840146	None:intergenic
AAATCGAAACCCTAGAATTT+GGG	0.347830	3_2:-8839206	None:intergenic
AAATTACAGTGAATTATTTA+AGG	0.190432	3_2:-8843255	None:intergenic
AAATTAGGGTTTCAATTTGA+TGG	0.382765	3_2:+8839530	Msa0394260:CDS
AACCTTCTTCAAGTGCTTCC+TGG	0.322107	3_2:-8840429	None:intergenic
AAGAGGGGTTTATCTGGGTC+TGG	0.371412	3_2:+8839728	Msa0394260:CDS
AAGGAAGATGAAGCTGGTTA+TGG	0.424672	3_2:+8840262	Msa0394260:CDS
AAGGAGTTGAAATTGAAATA+TGG	0.313980	3_2:+8839436	Msa0394260:exon
AAGGGTTCTGATGAGAAATT+AGG	0.189886	3_2:+8839515	Msa0394260:CDS
AAGTGTAGCAGTGCATCTGC+TGG	0.554085	3_2:+8842417	Msa0394260:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATCAAAATCCCAAATTCTA+GGG	+	chr3_2:8839197-8839216	Msa0394260:five_prime_UTR	30.0%
AAATCGAAACCCTAGAATTT+GGG	-	chr3_2:8839209-8839228	None:intergenic	30.0%
TGAAGAAATGGAAGAGAATT+AGG	+	chr3_2:8839651-8839670	Msa0394260:CDS	30.0%
AATTAGGAGGAATGTTGTTA+GGG	+	chr3_2:8839667-8839686	Msa0394260:CDS	30.0%
GTGTTAAGGAAAAAAACGAT+GGG	+	chr3_2:8839780-8839799	Msa0394260:CDS	30.0%
TTCGAAGAATTTAGTGAACT+CGG	+	chr3_2:8840006-8840025	Msa0394260:CDS	30.0%
GGAAAATTCTATTTCCAGTT+TGG	+	chr3_2:8840108-8840127	Msa0394260:CDS	30.0%
TTTAGTACGGTTACTAGTAA+TGG	+	chr3_2:8840166-8840185	Msa0394260:CDS	30.0%
TACTAATGAACATTTCACCA+AGG	+	chr3_2:8840243-8840262	Msa0394260:CDS	30.0%
AAACATATCACACAATAGGA+TGG	-	chr3_2:8840458-8840477	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	8839108	8843348	8839108	ID=Msa0394260;Name=Msa0394260
chr3_2	mRNA	8839108	8843348	8839108	ID=Msa0394260-mRNA-1;Parent=Msa0394260;Name=Msa0394260-mRNA-1;_AED=0.00;_eAED=0.00;_QI=173\|1\|1\|1\|0.5\|0.33\|3\|257\|575
chr3_2	exon	8839108	8839258	8839108	ID=Msa0394260-mRNA-1:exon:2271;Parent=Msa0394260-mRNA-1
chr3_2	exon	8839433	8840448	8839433	ID=Msa0394260-mRNA-1:exon:2272;Parent=Msa0394260-mRNA-1
chr3_2	exon	8842358	8843348	8842358	ID=Msa0394260-mRNA-1:exon:2273;Parent=Msa0394260-mRNA-1
chr3_2	five_prime_UTR	8839108	8839258	8839108	ID=Msa0394260-mRNA-1:five_prime_utr;Parent=Msa0394260-mRNA-1
chr3_2	five_prime_UTR	8839433	8839454	8839433	ID=Msa0394260-mRNA-1:five_prime_utr;Parent=Msa0394260-mRNA-1
chr3_2	CDS	8839455	8840448	8839455	ID=Msa0394260-mRNA-1:cds;Parent=Msa0394260-mRNA-1
chr3_2	CDS	8842358	8843091	8842358	ID=Msa0394260-mRNA-1:cds;Parent=Msa0394260-mRNA-1
chr3_2	three_prime_UTR	8843092	8843348	8843092	ID=Msa0394260-mRNA-1:three_prime_utr;Parent=Msa0394260-mRNA-1

Gene Sequence

>Msa0394260

ATGGATTTGGGAAGTGAATCGGTGGAAGAGAATGAAGTGAATCACGATGAAAATGGAATCAAGGGTTCTGATGAGAAATTAGGGTTTCAATTTGATGGCAATTTTGGTGTAAAACCAGATCAAGAAGGAATTGTTGCTGAATTGGGTAGTGAGGAAGCTGTGAATTCCAAAGGGGCACCAAGAAAGGGTGTTGGATTGAAGAAATGGAAGAGAATTAGGAGGAATGTTGTTAGGGATCATAATTCGAGTGCTGATGAATCCGGTAAGGTTTTGAAGAGGGGTTTATCTGGGTCTGGGAATGCGAATTTGAGTGAAAATCTGCGGGGTGTTAAGGAAAAAAACGATGGGTCTTCGAGTGCGTTTGGGAATGTAGTGTTTTCTGATGGGCATGCGATCCGGGGTTCTAGTACGGATTCTAGATATGCAGTTGGATCTGGTTTTGTTGTTGGGACTGATTCGGAGAATAGTGAGGATAGGAGTAGTAAGTCTTCTACTGCAGCTAGTGAGCCGAAGATGAGGCATGAGAAAGGCCGTGGTAGTAGGAATACGAATTCGAAGAATTTAGTGAACTCGGCTCAAAAGGTTCAGCAAGGAAAGGGATGGATTGAGAGCTCTGCAAAACCTGGAGGCAGTGGAAGAGTCAAGTTTGAGAAGGAAAATTCTATTTCCAGTTTGGATTCAGATTCGAGATCCAACTATAGGCAAGGTGTCTTTAGTACGGTTACTAGTAATGGAAAACATAGTGGTAACCCCCATGTTTATGATGGAGGTAACGATGGTGAAGCTCATACTAATGAACATTTCACCAAGGAAGATGAAGCTGGTTATGGCAATGAAAATGGCGAAGATGAAGATCTACAGGAGAATTCTGCGGCAAATCAGTCTTGGGATGCTCCTGAAGAAAAAAGTGAGAACAACCAGTCTACAAGTGCTGAAGATCCTTTGATCGAGTCTATCAGGAGCCTTCAGGCTGTCCAGGAAGCACTTGAAGAAGAAGTCCAGAAATTCAGGGAGATTGATACTGAAGTTGTCTCACCAGAAGACGACTCAGCTAAGTGTAGCAGTGCATCTGCTGGTATCACTGCTGTTGATCTTGGACTTCATAAGTCATTCTTATCTAGTCATTCTAGTGCAGATGAAACCAATCAAGCTGCTTCAAGTTCCTTGGAGTTTCAGATATCGAGTTTGAAACAACATGTAAACCTTTTGGAAAGCAAGCTGGAGGAGTTGCAAGGCGTGCTTGCTTCGAAGGATTCTAGGATAGTTGAACTTGAAACAGCCTTGAGTAGTGGTAAGTTTCCTAAAGAAGAATCTGCCAACACCCTAGGTTATAAAGAAGTAGAGTACGAGATCGAGGATCTTTTTAGGCAAAAGGTTGAAGCTGAGGTTGAATACCTAGCCATCGCTAAGGTGATGCAGAACTTGAAGGTTGGGGCAGATTTACAATTTACATTATTGGAAGAACAAGAGAAACTGTCCGAAAATCAAGCACAGGTTCTCAACAAGATCATAGATGCAGAGAGTAAGGCTTCAGTGCTGAAGAACAAAGCAGAAGAGTTGGAAAAATACTGTGATGATAGTTTAGTAATTGAGGAGTCTTTTTTGCTGCAGAAAAGAGTATGTAAGGTGTCATTTTATCTTTTCCTACAGTTCATGATGTTAATCTTGTTCTTTTGGTTTCTTTTGTCACAGTTATCCCAAAATTCTGGGGTTGTTGTGCCCACTTAA

Protein sequence

>Msa0394260

MDLGSESVEENEVNHDENGIKGSDEKLGFQFDGNFGVKPDQEGIVAELGSEEAVNSKGAPRKGVGLKKWKRIRRNVVRDHNSSADESGKVLKRGLSGSGNANLSENLRGVKEKNDGSSSAFGNVVFSDGHAIRGSSTDSRYAVGSGFVVGTDSENSEDRSSKSSTAASEPKMRHEKGRGSRNTNSKNLVNSAQKVQQGKGWIESSAKPGGSGRVKFEKENSISSLDSDSRSNYRQGVFSTVTSNGKHSGNPHVYDGGNDGEAHTNEHFTKEDEAGYGNENGEDEDLQENSAANQSWDAPEEKSENNQSTSAEDPLIESIRSLQAVQEALEEEVQKFREIDTEVVSPEDDSAKCSSASAGITAVDLGLHKSFLSSHSSADETNQAASSSLEFQISSLKQHVNLLESKLEELQGVLASKDSRIVELETALSSGKFPKEESANTLGYKEVEYEIEDLFRQKVEAEVEYLAIAKVMQNLKVGADLQFTLLEEQEKLSENQAQVLNKIIDAESKASVLKNKAEELEKYCDDSLVIEESFLLQKRVCKVSFYLFLQFMMLILFFWFLLSQLSQNSGVVVPT*