AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0394260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0394260 MtrunA17_Chr3g0079781 96.696 575 18 1 1 575 1 574 0.0 1113
Msa0394260 MtrunA17_Chr8g0369251 45.522 268 131 6 311 575 94 349 9.71e-54 186
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0394260 AT4G26455.1 33.669 496 216 18 62 550 75 464 1.63e-52 187
Msa0394260 AT5G56210.1 33.575 551 295 23 40 575 15 509 2.57e-40 154
Msa0394260 AT3G13360.1 29.091 550 266 19 37 575 23 459 7.68e-32 129
Msa0394260 AT3G13360.2 29.091 550 266 19 37 575 82 518 1.62e-31 129

Find 158 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATCGAAACCCTAGAATT+TGG 0.121917 3_2:-8839207 None:intergenic
GCACAACAACCCCAGAATTT+TGG 0.151362 3_2:-8843061 None:intergenic
TTTCAATTTGATGGCAATTT+TGG 0.164092 3_2:+8839539 Msa0394260:CDS
TATCAATCTCCCTGAATTTC+TGG 0.176921 3_2:-8842362 None:intergenic
AGAACTTACCCTTCTTTCTT+AGG 0.178438 3_2:+8843179 Msa0394260:three_prime_UTR
AAGGGTTCTGATGAGAAATT+AGG 0.189886 3_2:+8839515 Msa0394260:CDS
AAATTACAGTGAATTATTTA+AGG 0.190432 3_2:-8843255 None:intergenic
TGGATTCATTTATTATTAAA+AGG 0.208145 3_2:+8839237 Msa0394260:five_prime_UTR
TCACAGTTATCCCAAAATTC+TGG 0.215904 3_2:+8843050 Msa0394260:CDS
TGATGTTAATCTTGTTCTTT+TGG 0.219585 3_2:+8843018 Msa0394260:CDS
TTCAATCCAACACCCTTTCT+TGG 0.239534 3_2:-8839632 None:intergenic
AATTCACTGTAATTTGAGTT+TGG 0.245002 3_2:+8843263 Msa0394260:three_prime_UTR
TTGAAATTGAAATATGGATT+TGG 0.250648 3_2:+8839442 Msa0394260:exon
GAAACAACATGTAAACCTTT+TGG 0.279724 3_2:+8842551 Msa0394260:CDS
ACCCTTTCTTGGTGCCCCTT+TGG 0.281354 3_2:-8839621 None:intergenic
TTGCAGAAGTCCAGAAATTC+AGG 0.282661 3_2:+8842352 Msa0394260:intron
GGAAAATTCTATTTCCAGTT+TGG 0.284686 3_2:+8840108 Msa0394260:CDS
AGAAGGAATTGTTGCTGAAT+TGG 0.284953 3_2:+8839577 Msa0394260:CDS
GTGTTGGCAGATTCTTCTTT+AGG 0.285615 3_2:-8842663 None:intergenic
AGATTTACAATTTACATTAT+TGG 0.289460 3_2:+8842800 Msa0394260:CDS
TGAAGAAATGGAAGAGAATT+AGG 0.289879 3_2:+8839651 Msa0394260:CDS
GGGTTTCGATTTCCAATTCA+TGG 0.292858 3_2:+8839217 Msa0394260:five_prime_UTR
CCATCAAAATCCCAAATTCT+AGG 0.296085 3_2:+8839196 Msa0394260:five_prime_UTR
GATGGGTCTTCGAGTGCGTT+TGG 0.306114 3_2:+8839797 Msa0394260:CDS
AAGGAGTTGAAATTGAAATA+TGG 0.313980 3_2:+8839436 Msa0394260:exon
TTCTGATGGGCATGCGATCC+GGG 0.314140 3_2:+8839832 Msa0394260:CDS
ATTCACTGTAATTTGAGTTT+GGG 0.317485 3_2:+8843264 Msa0394260:three_prime_UTR
GAATTAGGAGGAATGTTGTT+AGG 0.319758 3_2:+8839666 Msa0394260:CDS
AACCTTCTTCAAGTGCTTCC+TGG 0.322107 3_2:-8840429 None:intergenic
TGCTTGCTTCGAAGGATTCT+AGG 0.328205 3_2:+8842601 Msa0394260:CDS
TGAAATTGAAATATGGATTT+GGG 0.329850 3_2:+8839443 Msa0394260:exon
CACTTAGCTGAGTCGTCTTC+TGG 0.338254 3_2:-8842399 None:intergenic
GCTGGTTATGGCAATGAAAA+TGG 0.347523 3_2:+8840274 Msa0394260:CDS
AAATCGAAACCCTAGAATTT+GGG 0.347830 3_2:-8839206 None:intergenic
ACCCCTCTTCAAAACCTTAC+CGG 0.347847 3_2:-8839714 None:intergenic
GGTATCACTGCTGTTGATCT+TGG 0.353511 3_2:+8842438 Msa0394260:CDS
ATCCTTTGATCGAGTCTATC+AGG 0.353744 3_2:+8840392 Msa0394260:CDS
TTTCTGATGGGCATGCGATC+CGG 0.358556 3_2:+8839831 Msa0394260:CDS
TAATAAATGAATCCATGAAT+TGG 0.360380 3_2:-8839229 None:intergenic
GGAACTTGAAGCAGCTTGAT+TGG 0.364131 3_2:-8842505 None:intergenic
CGAGTCTATCAGGAGCCTTC+AGG 0.370738 3_2:+8840402 Msa0394260:CDS
AAGAGGGGTTTATCTGGGTC+TGG 0.371412 3_2:+8839728 Msa0394260:CDS
GCAACAATTCCTTCTTGATC+TGG 0.373469 3_2:-8839569 None:intergenic
GAAGGAATTGTTGCTGAATT+GGG 0.375674 3_2:+8839578 Msa0394260:CDS
ATGGGTCTTCGAGTGCGTTT+GGG 0.377562 3_2:+8839798 Msa0394260:CDS
GAAGTGAATCACGATGAAAA+TGG 0.378652 3_2:+8839488 Msa0394260:CDS
AAATTAGGGTTTCAATTTGA+TGG 0.382765 3_2:+8839530 Msa0394260:CDS
TGATGCAGAACTTGAAGGTT+GGG 0.388770 3_2:+8842775 Msa0394260:CDS
CACAGTTATCCCAAAATTCT+GGG 0.390923 3_2:+8843051 Msa0394260:CDS
TGAAAATCTGCGGGGTGTTA+AGG 0.392736 3_2:+8839766 Msa0394260:CDS
TTCCAAAGGGGCACCAAGAA+AGG 0.398469 3_2:+8839619 Msa0394260:CDS
TCTCGAATCTGAATCCAAAC+TGG 0.402149 3_2:-8840122 None:intergenic
TCTAGATATGCAGTTGGATC+TGG 0.407629 3_2:+8839869 Msa0394260:CDS
TTTAGTACGGTTACTAGTAA+TGG 0.411085 3_2:+8840166 Msa0394260:CDS
GAACTTACCCTTCTTTCTTA+GGG 0.412824 3_2:+8843180 Msa0394260:three_prime_UTR
TCAAGCTGCTTCAAGTTCCT+TGG 0.417796 3_2:+8842509 Msa0394260:CDS
TTTAGTGAACTCGGCTCAAA+AGG 0.417990 3_2:+8840015 Msa0394260:CDS
TACCCTTCTTTCTTAGGGTA+GGG 0.419856 3_2:+8843185 Msa0394260:three_prime_UTR
AAGGAAGATGAAGCTGGTTA+TGG 0.424672 3_2:+8840262 Msa0394260:CDS
AGGGTGTTGGATTGAAGAAA+TGG 0.426291 3_2:+8839639 Msa0394260:CDS
AGGGTTCTGATGAGAAATTA+GGG 0.427817 3_2:+8839516 Msa0394260:CDS
GATCATAGATGCAGAGAGTA+AGG 0.429913 3_2:+8842869 Msa0394260:CDS
CAGGAGCCTTCAGGCTGTCC+AGG 0.431092 3_2:+8840411 Msa0394260:CDS
GCTGCAGAAAAGAGTATGTA+AGG 0.439143 3_2:+8842968 Msa0394260:CDS
CAGATTCGAGATCCAACTAT+AGG 0.441179 3_2:+8840134 Msa0394260:CDS
AATTAGGAGGAATGTTGTTA+GGG 0.443869 3_2:+8839667 Msa0394260:CDS
CCTTTCTCATGCCTCATCTT+CGG 0.449805 3_2:-8839962 None:intergenic
CCTCCAGCTTGCTTTCCAAA+AGG 0.451050 3_2:-8842566 None:intergenic
ATAACCAGCTTCATCTTCCT+TGG 0.452817 3_2:-8840260 None:intergenic
GCAAGGCGTGCTTGCTTCGA+AGG 0.456931 3_2:+8842593 Msa0394260:CDS
CATCAAAATCCCAAATTCTA+GGG 0.461231 3_2:+8839197 Msa0394260:five_prime_UTR
TGATGATAGTTTAGTAATTG+AGG 0.464590 3_2:+8842935 Msa0394260:CDS
TCACGATGAAAATGGAATCA+AGG 0.466507 3_2:+8839496 Msa0394260:CDS
AAAGACACCTTGCCTATAGT+TGG 0.470804 3_2:-8840146 None:intergenic
ATGAGAAAGGCCGTGGTAGT+AGG 0.471311 3_2:+8839975 Msa0394260:CDS
TGGCGAAGATGAAGATCTAC+AGG 0.474868 3_2:+8840294 Msa0394260:CDS
GATCTTCAGCACTTGTAGAC+TGG 0.475844 3_2:-8840372 None:intergenic
CTCTACTTCTTTATAACCTA+GGG 0.478091 3_2:-8842685 None:intergenic
ATTGAGAGCTCTGCAAAACC+TGG 0.478850 3_2:+8840058 Msa0394260:CDS
TAAGGTGATGCAGAACTTGA+AGG 0.479356 3_2:+8842770 Msa0394260:CDS
TTGACTCTTCCACTGCCTCC+AGG 0.479384 3_2:-8840076 None:intergenic
ACTCTACTTCTTTATAACCT+AGG 0.480486 3_2:-8842686 None:intergenic
AATTCGAGTGCTGATGAATC+CGG 0.484587 3_2:+8839695 Msa0394260:CDS
TTCTGCGGCAAATCAGTCTT+GGG 0.487223 3_2:+8840321 Msa0394260:CDS
ACCCTTCTTTCTTAGGGTAG+GGG 0.490575 3_2:+8843186 Msa0394260:three_prime_UTR
ATCCCCTACCCTAAGAAAGA+AGG 0.494393 3_2:-8843188 None:intergenic
TATGGATTTGGGAAGTGAAT+CGG 0.504956 3_2:+8839454 Msa0394260:exon
GTCCAGGAAGCACTTGAAGA+AGG 0.506986 3_2:+8840427 Msa0394260:CDS
AGAGGGGTTTATCTGGGTCT+GGG 0.510213 3_2:+8839729 Msa0394260:CDS
ATTCTGCGGCAAATCAGTCT+TGG 0.512363 3_2:+8840320 Msa0394260:CDS
TTCTTTATAACCTAGGGTGT+TGG 0.512371 3_2:-8842679 None:intergenic
CGTTACCTCCATCATAAACA+TGG 0.514459 3_2:-8840207 None:intergenic
GTGATGCAGAACTTGAAGGT+TGG 0.516204 3_2:+8842774 Msa0394260:CDS
GAAGAACAAAGCAGAAGAGT+TGG 0.517816 3_2:+8842902 Msa0394260:CDS
TGCGATCCGGGGTTCTAGTA+CGG 0.518637 3_2:+8839844 Msa0394260:CDS
TCCAAAGGGGCACCAAGAAA+GGG 0.519135 3_2:+8839620 Msa0394260:CDS
CCGAAGATGAGGCATGAGAA+AGG 0.520351 3_2:+8839962 Msa0394260:CDS
TCTGCAAAACCTGGAGGCAG+TGG 0.526361 3_2:+8840067 Msa0394260:CDS
TGTTGCTGAATTGGGTAGTG+AGG 0.530555 3_2:+8839586 Msa0394260:CDS
CACGATGAAAATGGAATCAA+GGG 0.532616 3_2:+8839497 Msa0394260:CDS
TTCGAAGAATTTAGTGAACT+CGG 0.536592 3_2:+8840006 Msa0394260:CDS
GAAGAATCTGCCAACACCCT+AGG 0.548150 3_2:+8842669 Msa0394260:CDS
CAAAAGGTTCAGCAAGGAAA+GGG 0.549338 3_2:+8840031 Msa0394260:CDS
TGCAGAAGTCCAGAAATTCA+GGG 0.553635 3_2:+8842353 Msa0394260:intron
AAGTGTAGCAGTGCATCTGC+TGG 0.554085 3_2:+8842417 Msa0394260:CDS
TTACCCTTCTTTCTTAGGGT+AGG 0.554309 3_2:+8843184 Msa0394260:three_prime_UTR
AGGAAGCTGTGAATTCCAAA+GGG 0.556817 3_2:+8839606 Msa0394260:CDS
TCCCCTACCCTAAGAAAGAA+GGG 0.558326 3_2:-8843187 None:intergenic
AGATTAACATCATGAACTGT+AGG 0.559173 3_2:-8843007 None:intergenic
TCAAAAGGTTCAGCAAGGAA+AGG 0.565767 3_2:+8840030 Msa0394260:CDS
TAGGCAAGGTGTCTTTAGTA+CGG 0.569614 3_2:+8840153 Msa0394260:CDS
GCATCACCTTAGCGATGGCT+AGG 0.570346 3_2:-8842758 None:intergenic
TTCACCAAGGAAGATGAAGC+TGG 0.571532 3_2:+8840256 Msa0394260:CDS
GGTGTAAAACCAGATCAAGA+AGG 0.572427 3_2:+8839560 Msa0394260:CDS
GTGCTTCCTGGACAGCCTGA+AGG 0.572548 3_2:-8840417 None:intergenic
TAGGCAAAAGGTTGAAGCTG+AGG 0.572695 3_2:+8842728 Msa0394260:CDS
ATTCGGAGAATAGTGAGGAT+AGG 0.575067 3_2:+8839909 Msa0394260:CDS
ATGAGGCATGAGAAAGGCCG+TGG 0.577436 3_2:+8839968 Msa0394260:CDS
AGGAAACTTACCACTACTCA+AGG 0.580046 3_2:-8842643 None:intergenic
ACTAGTAATGGAAAACATAG+TGG 0.580430 3_2:+8840178 Msa0394260:CDS
GAGGAAGCTGTGAATTCCAA+AGG 0.581063 3_2:+8839605 Msa0394260:CDS
TCTGATGGGCATGCGATCCG+GGG 0.581710 3_2:+8839833 Msa0394260:CDS
TAGAATCCGTACTAGAACCC+CGG 0.582400 3_2:-8839850 None:intergenic
GAGTGCTGATGAATCCGGTA+AGG 0.582886 3_2:+8839700 Msa0394260:CDS
GAATTTGAGTGAAAATCTGC+GGG 0.583607 3_2:+8839757 Msa0394260:CDS
AATTCGTATTCCTACTACCA+CGG 0.586935 3_2:-8839985 None:intergenic
CTTGAAACAGCCTTGAGTAG+TGG 0.587229 3_2:+8842633 Msa0394260:CDS
AGAAATGGAAGAGAATTAGG+AGG 0.592844 3_2:+8839654 Msa0394260:CDS
AGGTTCAGCAAGGAAAGGGA+TGG 0.596261 3_2:+8840035 Msa0394260:CDS
CACAAAATGATAATAGAACA+AGG 0.596347 3_2:-8843227 None:intergenic
GGGGCACCAAGAAAGGGTGT+TGG 0.598134 3_2:+8839626 Msa0394260:CDS
ACGGATTCTAGATATGCAGT+TGG 0.598937 3_2:+8839863 Msa0394260:CDS
CTCCTGATAGACTCGATCAA+AGG 0.598987 3_2:-8840394 None:intergenic
CGAATTTGAGTGAAAATCTG+CGG 0.603111 3_2:+8839756 Msa0394260:CDS
AGAAGTAGAGTACGAGATCG+AGG 0.604863 3_2:+8842698 Msa0394260:CDS
CAGCTAGTGAGCCGAAGATG+AGG 0.606701 3_2:+8839951 Msa0394260:CDS
GATGCAGAACTTGAAGGTTG+GGG 0.607398 3_2:+8842776 Msa0394260:CDS
GGATTTGGGAAGTGAATCGG+TGG 0.608119 3_2:+8839457 Msa0394260:CDS
ACTGTCCGAAAATCAAGCAC+AGG 0.613967 3_2:+8842836 Msa0394260:CDS
TGGAAGAGTCAAGTTTGAGA+AGG 0.614051 3_2:+8840087 Msa0394260:CDS
GTTACCTCCATCATAAACAT+GGG 0.616232 3_2:-8840206 None:intergenic
ACTCGATATCTGAAACTCCA+AGG 0.620943 3_2:-8842526 None:intergenic
AGCAAGCTGGAGGAGTTGCA+AGG 0.625840 3_2:+8842576 Msa0394260:CDS
TCGAGATCCAACTATAGGCA+AGG 0.632294 3_2:+8840139 Msa0394260:CDS
TGAATACCTAGCCATCGCTA+AGG 0.643417 3_2:+8842752 Msa0394260:CDS
GTTCTGCATCACCTTAGCGA+TGG 0.647863 3_2:-8842763 None:intergenic
AGGGTAAGTTCTATATAACA+AGG 0.651537 3_2:-8843168 None:intergenic
ACAGTTATCCCAAAATTCTG+GGG 0.661233 3_2:+8843052 Msa0394260:CDS
GAGAGCTCTGCAAAACCTGG+AGG 0.662709 3_2:+8840061 Msa0394260:CDS
TTACCTCCATCATAAACATG+GGG 0.669072 3_2:-8840205 None:intergenic
TCGGCTCAAAAGGTTCAGCA+AGG 0.672328 3_2:+8840025 Msa0394260:CDS
GACTGATTCGGAGAATAGTG+AGG 0.677891 3_2:+8839904 Msa0394260:CDS
TACTAATGAACATTTCACCA+AGG 0.694692 3_2:+8840243 Msa0394260:CDS
GTTTATGATGGAGGTAACGA+TGG 0.695425 3_2:+8840211 Msa0394260:CDS
AGATCTACAGGAGAATTCTG+CGG 0.721794 3_2:+8840306 Msa0394260:CDS
GGAAGCTGTGAATTCCAAAG+GGG 0.746487 3_2:+8839607 Msa0394260:CDS
TACCTCCATCATAAACATGG+GGG 0.749426 3_2:-8840204 None:intergenic
AATTTGAGTGAAAATCTGCG+GGG 0.860716 3_2:+8839758 Msa0394260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAGTAATATGTATTATA+AGG - chr3_2:8840978-8840997 None:intergenic 10.0%
!! AGATTAAAAATGAAATAATA+TGG - chr3_2:8841349-8841368 None:intergenic 10.0%
!! TGGATTCATTTATTATTAAA+AGG + chr3_2:8839237-8839256 Msa0394260:five_prime_UTR 15.0%
!!! TGTGATATGTTTTATTTTTA+TGG + chr3_2:8840466-8840485 Msa0394260:intron 15.0%
!!! GTGATATGTTTTATTTTTAT+GGG + chr3_2:8840467-8840486 Msa0394260:intron 15.0%
!! GTTAATTAGTTATGTTAATA+AGG - chr3_2:8840925-8840944 None:intergenic 15.0%
!! GTTGTTAATATAATGTTAAA+CGG + chr3_2:8841169-8841188 Msa0394260:intron 15.0%
!! AATACTTTCATAAAACATAA+TGG - chr3_2:8841507-8841526 None:intergenic 15.0%
!!! TATTTCATATTTTCTACAAT+AGG - chr3_2:8841670-8841689 None:intergenic 15.0%
!!! ATATGAAATAATCTTGTTAT+TGG + chr3_2:8841680-8841699 Msa0394260:intron 15.0%
!! GTATGAATCATAAATATAAT+TGG + chr3_2:8842021-8842040 Msa0394260:intron 15.0%
!!! TTTTCATTTGCTTAAATTTA+TGG + chr3_2:8842148-8842167 Msa0394260:intron 15.0%
!! AGATTTACAATTTACATTAT+TGG + chr3_2:8842800-8842819 Msa0394260:CDS 15.0%
!! AAATTACAGTGAATTATTTA+AGG - chr3_2:8843258-8843277 None:intergenic 15.0%
!! TAATAAATGAATCCATGAAT+TGG - chr3_2:8839232-8839251 None:intergenic 20.0%
!! CTAAATATGAGAACAAAAAT+CGG - chr3_2:8839413-8839432 None:intergenic 20.0%
!! TTGAAATTGAAATATGGATT+TGG + chr3_2:8839442-8839461 Msa0394260:exon 20.0%
!! TGAAATTGAAATATGGATTT+GGG + chr3_2:8839443-8839462 Msa0394260:exon 20.0%
!! AATAAAACATATCACACAAT+AGG - chr3_2:8840462-8840481 None:intergenic 20.0%
!! AGACAAACAAATTATATAGT+AGG - chr3_2:8840679-8840698 None:intergenic 20.0%
!!! ATCAGTGAAATATTTTGAAT+CGG - chr3_2:8840901-8840920 None:intergenic 20.0%
!! GAATTATATGTTTAGAGAAA+AGG + chr3_2:8841634-8841653 Msa0394260:intron 20.0%
!! ATCTTTATGATGTTTCTTAA+TGG - chr3_2:8841907-8841926 None:intergenic 20.0%
!!! ATTGGACTTAAATGATTTTT+AGG + chr3_2:8841999-8842018 Msa0394260:intron 20.0%
! TTGTTCTCATATTTAGCTAA+AGG + chr3_2:8839417-8839436 Msa0394260:intron 25.0%
! AAGGAGTTGAAATTGAAATA+TGG + chr3_2:8839436-8839455 Msa0394260:exon 25.0%
! AAATTAGGGTTTCAATTTGA+TGG + chr3_2:8839530-8839549 Msa0394260:CDS 25.0%
!!! TTTCAATTTGATGGCAATTT+TGG + chr3_2:8839539-8839558 Msa0394260:CDS 25.0%
! ATATATGTTGCATTTACTCA+AGG - chr3_2:8840561-8840580 None:intergenic 25.0%
!!! GGTTTTAAATATAGTACTGT+TGG - chr3_2:8841121-8841140 None:intergenic 25.0%
!! GCATATTATTTCTTGAGAAT+AGG + chr3_2:8841287-8841306 Msa0394260:intron 25.0%
! AATGAAATAATATGGCCAAA+TGG - chr3_2:8841341-8841360 None:intergenic 25.0%
!!! AAAGTATTGAACTGAATGTT+GGG + chr3_2:8841519-8841538 Msa0394260:intron 25.0%
!! CTTTTTCTTGTAGCTTTTTA+CGG - chr3_2:8841545-8841564 None:intergenic 25.0%
!!! TGAAATAATCTTGTTATTGG+TGG + chr3_2:8841683-8841702 Msa0394260:intron 25.0%
! CAAACCATTAAGAAAGATAT+TGG + chr3_2:8841806-8841825 Msa0394260:intron 25.0%
! AAGTCCAATATCTTTCTTAA+TGG - chr3_2:8841813-8841832 None:intergenic 25.0%
!! AGATATTGGACTTGATTTTT+AGG + chr3_2:8841820-8841839 Msa0394260:intron 25.0%
!!! GATTTTTAGGTATGAATGAT+TGG + chr3_2:8841833-8841852 Msa0394260:intron 25.0%
! CAAACCATTAAGAAAGATAT+TGG + chr3_2:8841806-8841825 Msa0394260:intron 25.0%
! AAGTCCAATATCTTTCTTAA+TGG - chr3_2:8841813-8841832 None:intergenic 25.0%
! AATAAGTGCAAAATAGCATA+TGG - chr3_2:8842130-8842149 None:intergenic 25.0%
! TGATGATAGTTTAGTAATTG+AGG + chr3_2:8842935-8842954 Msa0394260:CDS 25.0%
!! TGATGTTAATCTTGTTCTTT+TGG + chr3_2:8843018-8843037 Msa0394260:CDS 25.0%
!! CAAAATGAAACTAATTTTGC+AGG - chr3_2:8843096-8843115 None:intergenic 25.0%
! CACAAAATGATAATAGAACA+AGG - chr3_2:8843230-8843249 None:intergenic 25.0%
!! AATTCACTGTAATTTGAGTT+TGG + chr3_2:8843263-8843282 Msa0394260:three_prime_UTR 25.0%
!! ATTCACTGTAATTTGAGTTT+GGG + chr3_2:8843264-8843283 Msa0394260:three_prime_UTR 25.0%
!! GATGGATTTGCGATTTTATA+GGG - chr3_2:8839181-8839200 None:intergenic 30.0%
!!! TGATGGATTTGCGATTTTAT+AGG - chr3_2:8839182-8839201 None:intergenic 30.0%
CATCAAAATCCCAAATTCTA+GGG + chr3_2:8839197-8839216 Msa0394260:five_prime_UTR 30.0%
AAATCGAAACCCTAGAATTT+GGG - chr3_2:8839209-8839228 None:intergenic 30.0%
TGAAGAAATGGAAGAGAATT+AGG + chr3_2:8839651-8839670 Msa0394260:CDS 30.0%
AATTAGGAGGAATGTTGTTA+GGG + chr3_2:8839667-8839686 Msa0394260:CDS 30.0%
GTGTTAAGGAAAAAAACGAT+GGG + chr3_2:8839780-8839799 Msa0394260:CDS 30.0%
TTCGAAGAATTTAGTGAACT+CGG + chr3_2:8840006-8840025 Msa0394260:CDS 30.0%
GGAAAATTCTATTTCCAGTT+TGG + chr3_2:8840108-8840127 Msa0394260:CDS 30.0%
TTTAGTACGGTTACTAGTAA+TGG + chr3_2:8840166-8840185 Msa0394260:CDS 30.0%
! ACTAGTAATGGAAAACATAG+TGG + chr3_2:8840178-8840197 Msa0394260:CDS 30.0%
TACTAATGAACATTTCACCA+AGG + chr3_2:8840243-8840262 Msa0394260:CDS 30.0%
!!! TTGTTCTCACTTTTTTCTTC+AGG - chr3_2:8840352-8840371 None:intergenic 30.0%
AAACATATCACACAATAGGA+TGG - chr3_2:8840458-8840477 None:intergenic 30.0%
CAACAATCTCAATTGCAAAT+TGG - chr3_2:8840520-8840539 None:intergenic 30.0%
TTACTCAAGGATTATAACAC+CGG - chr3_2:8840548-8840567 None:intergenic 30.0%
TTGTCAACAAACTGATGATA+AGG - chr3_2:8840586-8840605 None:intergenic 30.0%
!! ATCATCAGTTTGTTGACAAT+TGG + chr3_2:8840587-8840606 Msa0394260:intron 30.0%
TAGACAGTTGAATTCAATCT+TGG - chr3_2:8840621-8840640 None:intergenic 30.0%
ATTAAACAGAGCCAAATACA+TGG - chr3_2:8840751-8840770 None:intergenic 30.0%
!!! CTGTTTAATCAGTTTTGGTT+TGG + chr3_2:8840762-8840781 Msa0394260:intron 30.0%
! TTATAAGGTATCAGTGAGTA+AGG - chr3_2:8840963-8840982 None:intergenic 30.0%
ATCATAAGATCCAAGTAAGA+TGG + chr3_2:8841407-8841426 Msa0394260:intron 30.0%
!! GAAAGTATTGAACTGAATGT+TGG + chr3_2:8841518-8841537 Msa0394260:intron 30.0%
TATATGTTTAGAGAAAAGGC+AGG + chr3_2:8841638-8841657 Msa0394260:intron 30.0%
ATATGTTTAGAGAAAAGGCA+GGG + chr3_2:8841639-8841658 Msa0394260:intron 30.0%
!! ATAATCTTGTTATTGGTGGT+TGG + chr3_2:8841687-8841706 Msa0394260:intron 30.0%
!! TAATCTTGTTATTGGTGGTT+GGG + chr3_2:8841688-8841707 Msa0394260:intron 30.0%
TCATAAAGATGTAGATCAGA+TGG + chr3_2:8841917-8841936 Msa0394260:intron 30.0%
CATAAAGATGTAGATCAGAT+GGG + chr3_2:8841918-8841937 Msa0394260:intron 30.0%
ATAAAGATGTAGATCAGATG+GGG + chr3_2:8841919-8841938 Msa0394260:intron 30.0%
TATGCCAATAAACTACTTTC+AGG - chr3_2:8842246-8842265 None:intergenic 30.0%
! TATGAAGTTCTGTCTTTTTC+TGG + chr3_2:8842273-8842292 Msa0394260:intron 30.0%
TGGAAGAAAAGAATTGAGTA+TGG + chr3_2:8842293-8842312 Msa0394260:intron 30.0%
TACAAATTGGTTATCAGCAA+TGG - chr3_2:8842325-8842344 None:intergenic 30.0%
! GAAACAACATGTAAACCTTT+TGG + chr3_2:8842551-8842570 Msa0394260:CDS 30.0%
CTCTACTTCTTTATAACCTA+GGG - chr3_2:8842688-8842707 None:intergenic 30.0%
ACTCTACTTCTTTATAACCT+AGG - chr3_2:8842689-8842708 None:intergenic 30.0%
AGATTAACATCATGAACTGT+AGG - chr3_2:8843010-8843029 None:intergenic 30.0%
AGGGTAAGTTCTATATAACA+AGG - chr3_2:8843171-8843190 None:intergenic 30.0%
!! CCTAGAATTTGGGATTTTGA+TGG - chr3_2:8839199-8839218 None:intergenic 35.0%
CCATCAAAATCCCAAATTCT+AGG + chr3_2:8839196-8839215 Msa0394260:five_prime_UTR 35.0%
GAAATCGAAACCCTAGAATT+TGG - chr3_2:8839210-8839229 None:intergenic 35.0%
TATGGATTTGGGAAGTGAAT+CGG + chr3_2:8839454-8839473 Msa0394260:exon 35.0%
GAAGTGAATCACGATGAAAA+TGG + chr3_2:8839488-8839507 Msa0394260:CDS 35.0%
TCACGATGAAAATGGAATCA+AGG + chr3_2:8839496-8839515 Msa0394260:CDS 35.0%
CACGATGAAAATGGAATCAA+GGG + chr3_2:8839497-8839516 Msa0394260:CDS 35.0%
! AAGGGTTCTGATGAGAAATT+AGG + chr3_2:8839515-8839534 Msa0394260:CDS 35.0%
! AGGGTTCTGATGAGAAATTA+GGG + chr3_2:8839516-8839535 Msa0394260:CDS 35.0%
AGAAGGAATTGTTGCTGAAT+TGG + chr3_2:8839577-8839596 Msa0394260:CDS 35.0%
GAAGGAATTGTTGCTGAATT+GGG + chr3_2:8839578-8839597 Msa0394260:CDS 35.0%
AGAAATGGAAGAGAATTAGG+AGG + chr3_2:8839654-8839673 Msa0394260:CDS 35.0%
GAATTAGGAGGAATGTTGTT+AGG + chr3_2:8839666-8839685 Msa0394260:CDS 35.0%
!! TTTTGAAGAGGGGTTTATCT+GGG + chr3_2:8839723-8839742 Msa0394260:CDS 35.0%
CGAATTTGAGTGAAAATCTG+CGG + chr3_2:8839756-8839775 Msa0394260:CDS 35.0%
GAATTTGAGTGAAAATCTGC+GGG + chr3_2:8839757-8839776 Msa0394260:CDS 35.0%
AATTTGAGTGAAAATCTGCG+GGG + chr3_2:8839758-8839777 Msa0394260:CDS 35.0%
GGTGTTAAGGAAAAAAACGA+TGG + chr3_2:8839779-8839798 Msa0394260:CDS 35.0%
! GGAATGTAGTGTTTTCTGAT+GGG + chr3_2:8839819-8839838 Msa0394260:CDS 35.0%
!!! TTGGATCTGGTTTTGTTGTT+GGG + chr3_2:8839882-8839901 Msa0394260:CDS 35.0%
!!! TTTTGTTGTTGGGACTGATT+CGG + chr3_2:8839892-8839911 Msa0394260:CDS 35.0%
AATTCGTATTCCTACTACCA+CGG - chr3_2:8839988-8840007 None:intergenic 35.0%
TTACCTCCATCATAAACATG+GGG - chr3_2:8840208-8840227 None:intergenic 35.0%
GTTACCTCCATCATAAACAT+GGG - chr3_2:8840209-8840228 None:intergenic 35.0%
AATTGCAAATTGGCAACAAG+AGG - chr3_2:8840510-8840529 None:intergenic 35.0%
AATTGAGATTGTTGTGTTGC+CGG + chr3_2:8840526-8840545 Msa0394260:intron 35.0%
!! GAAGGTTTGTTAGACAGTTA+GGG - chr3_2:8840708-8840727 None:intergenic 35.0%
!! AGAAGGTTTGTTAGACAGTT+AGG - chr3_2:8840709-8840728 None:intergenic 35.0%
TGGCACGATATAAAATGAGA+AGG - chr3_2:8840726-8840745 None:intergenic 35.0%
!! TGGCTCTGTTTAATCAGTTT+TGG + chr3_2:8840757-8840776 Msa0394260:intron 35.0%
! TGACTAGCAGTTGCAAATTT+TGG + chr3_2:8840861-8840880 Msa0394260:intron 35.0%
! TTTAGAGCCGTAAGTTATGA+TGG + chr3_2:8841027-8841046 Msa0394260:intron 35.0%
GTGTAGACCATCATAACTTA+CGG - chr3_2:8841037-8841056 None:intergenic 35.0%
GAACTAAATATGCAGGACAA+CGG - chr3_2:8841142-8841161 None:intergenic 35.0%
CATGTAGAGAAATAAACTGC+TGG - chr3_2:8841220-8841239 None:intergenic 35.0%
TCATTTGTACATGACTTGAG+AGG + chr3_2:8841314-8841333 Msa0394260:intron 35.0%
!! AATCTCATGCATTGACTTGA+TGG + chr3_2:8841364-8841383 Msa0394260:intron 35.0%
!! ATCTCATGCATTGACTTGAT+GGG + chr3_2:8841365-8841384 Msa0394260:intron 35.0%
TAAGATCCAAGTAAGATGGT+TGG + chr3_2:8841411-8841430 Msa0394260:intron 35.0%
TTGGAATGGATCAATGTTTC+AGG + chr3_2:8841430-8841449 Msa0394260:intron 35.0%
CAGAAATGAGAATACTGCAT+TGG + chr3_2:8841575-8841594 Msa0394260:intron 35.0%
TCGTAAAGATGTAGATCAGA+TGG + chr3_2:8841742-8841761 Msa0394260:intron 35.0%
CGTAAAGATGTAGATCAGAT+GGG + chr3_2:8841743-8841762 Msa0394260:intron 35.0%
GTAAAGATGTAGATCAGATG+GGG + chr3_2:8841744-8841763 Msa0394260:intron 35.0%
TAAAGATGTAGATCAGATGG+GGG + chr3_2:8841745-8841764 Msa0394260:intron 35.0%
ACATGACTTGAGTCAACAAT+AGG + chr3_2:8841863-8841882 Msa0394260:intron 35.0%
TAAAGATGTAGATCAGATGG+GGG + chr3_2:8841745-8841764 Msa0394260:intron 35.0%
GCATCATTGTTTCCTATTGT+TGG - chr3_2:8842066-8842085 None:intergenic 35.0%
TATCAATCTCCCTGAATTTC+TGG - chr3_2:8842365-8842384 None:intergenic 35.0%
TTCTTTATAACCTAGGGTGT+TGG - chr3_2:8842682-8842701 None:intergenic 35.0%
TCACAGTTATCCCAAAATTC+TGG + chr3_2:8843050-8843069 Msa0394260:CDS 35.0%
CACAGTTATCCCAAAATTCT+GGG + chr3_2:8843051-8843070 Msa0394260:CDS 35.0%
ACAGTTATCCCAAAATTCTG+GGG + chr3_2:8843052-8843071 Msa0394260:CDS 35.0%
! CTAATTTTGCAGGCTTAAGT+GGG - chr3_2:8843086-8843105 None:intergenic 35.0%
! ACTAATTTTGCAGGCTTAAG+TGG - chr3_2:8843087-8843106 None:intergenic 35.0%
AGAACTTACCCTTCTTTCTT+AGG + chr3_2:8843179-8843198 Msa0394260:three_prime_UTR 35.0%
GAACTTACCCTTCTTTCTTA+GGG + chr3_2:8843180-8843199 Msa0394260:three_prime_UTR 35.0%
GGGTTTCGATTTCCAATTCA+TGG + chr3_2:8839217-8839236 Msa0394260:five_prime_UTR 40.0%
GGTGTAAAACCAGATCAAGA+AGG + chr3_2:8839560-8839579 Msa0394260:CDS 40.0%
GCAACAATTCCTTCTTGATC+TGG - chr3_2:8839572-8839591 None:intergenic 40.0%
AGGAAGCTGTGAATTCCAAA+GGG + chr3_2:8839606-8839625 Msa0394260:CDS 40.0%
TTCAATCCAACACCCTTTCT+TGG - chr3_2:8839635-8839654 None:intergenic 40.0%
!! AGGGTGTTGGATTGAAGAAA+TGG + chr3_2:8839639-8839658 Msa0394260:CDS 40.0%
!! AATTCGAGTGCTGATGAATC+CGG + chr3_2:8839695-8839714 Msa0394260:CDS 40.0%
!!! AATCCGGTAAGGTTTTGAAG+AGG + chr3_2:8839711-8839730 Msa0394260:CDS 40.0%
!!! ATCCGGTAAGGTTTTGAAGA+GGG + chr3_2:8839712-8839731 Msa0394260:CDS 40.0%
!!! GTTTTGAAGAGGGGTTTATC+TGG + chr3_2:8839722-8839741 Msa0394260:CDS 40.0%
! GGGAATGTAGTGTTTTCTGA+TGG + chr3_2:8839818-8839837 Msa0394260:CDS 40.0%
ACGGATTCTAGATATGCAGT+TGG + chr3_2:8839863-8839882 Msa0394260:CDS 40.0%
TCTAGATATGCAGTTGGATC+TGG + chr3_2:8839869-8839888 Msa0394260:CDS 40.0%
!!! GTTGGATCTGGTTTTGTTGT+TGG + chr3_2:8839881-8839900 Msa0394260:CDS 40.0%
ATTCGGAGAATAGTGAGGAT+AGG + chr3_2:8839909-8839928 Msa0394260:CDS 40.0%
TTTAGTGAACTCGGCTCAAA+AGG + chr3_2:8840015-8840034 Msa0394260:CDS 40.0%
TCAAAAGGTTCAGCAAGGAA+AGG + chr3_2:8840030-8840049 Msa0394260:CDS 40.0%
CAAAAGGTTCAGCAAGGAAA+GGG + chr3_2:8840031-8840050 Msa0394260:CDS 40.0%
TGGAAGAGTCAAGTTTGAGA+AGG + chr3_2:8840087-8840106 Msa0394260:CDS 40.0%
TCTCGAATCTGAATCCAAAC+TGG - chr3_2:8840125-8840144 None:intergenic 40.0%
CAGATTCGAGATCCAACTAT+AGG + chr3_2:8840134-8840153 Msa0394260:CDS 40.0%
AAAGACACCTTGCCTATAGT+TGG - chr3_2:8840149-8840168 None:intergenic 40.0%
! TAGGCAAGGTGTCTTTAGTA+CGG + chr3_2:8840153-8840172 Msa0394260:CDS 40.0%
TACCTCCATCATAAACATGG+GGG - chr3_2:8840207-8840226 None:intergenic 40.0%
CGTTACCTCCATCATAAACA+TGG - chr3_2:8840210-8840229 None:intergenic 40.0%
! GTTTATGATGGAGGTAACGA+TGG + chr3_2:8840211-8840230 Msa0394260:CDS 40.0%
ATAACCAGCTTCATCTTCCT+TGG - chr3_2:8840263-8840282 None:intergenic 40.0%
AAGGAAGATGAAGCTGGTTA+TGG + chr3_2:8840262-8840281 Msa0394260:CDS 40.0%
GCTGGTTATGGCAATGAAAA+TGG + chr3_2:8840274-8840293 Msa0394260:CDS 40.0%
AGATCTACAGGAGAATTCTG+CGG + chr3_2:8840306-8840325 Msa0394260:CDS 40.0%
ATCCTTTGATCGAGTCTATC+AGG + chr3_2:8840392-8840411 Msa0394260:CDS 40.0%
CAACTGTCTATTAAGCTGCT+AGG + chr3_2:8840631-8840650 Msa0394260:intron 40.0%
ATCGTGCCAAACCATGTATT+TGG + chr3_2:8840737-8840756 Msa0394260:intron 40.0%
ACAGAGCCAAATACATGGTT+TGG - chr3_2:8840746-8840765 None:intergenic 40.0%
CTATCTAGTAGCAGAGTTCA+AGG - chr3_2:8840790-8840809 None:intergenic 40.0%
TATGATGGTCTACACTCTAC+TGG + chr3_2:8841042-8841061 Msa0394260:intron 40.0%
CAGCACAGAACTAAATATGC+AGG - chr3_2:8841149-8841168 None:intergenic 40.0%
!! CTGCATATTTAGTTCTGTGC+TGG + chr3_2:8841147-8841166 Msa0394260:intron 40.0%
!! TCTCATGCATTGACTTGATG+GGG + chr3_2:8841366-8841385 Msa0394260:intron 40.0%
TCCAAGTAAGATGGTTGGAA+TGG + chr3_2:8841416-8841435 Msa0394260:intron 40.0%
TCCATTCCAACCATCTTACT+TGG - chr3_2:8841420-8841439 None:intergenic 40.0%
GAATGGATCAATGTTTCAGG+TGG + chr3_2:8841433-8841452 Msa0394260:intron 40.0%
ACATGACTTGAGCCAACAAT+AGG + chr3_2:8842051-8842070 Msa0394260:intron 40.0%
AGGAAACAATGATGCGAAGT+AGG + chr3_2:8842071-8842090 Msa0394260:intron 40.0%
GCTGCCTGAAAGTAGTTTAT+TGG + chr3_2:8842239-8842258 Msa0394260:intron 40.0%
! CTGCAAGAGCACATACAAAT+TGG - chr3_2:8842338-8842357 None:intergenic 40.0%
TTGCAGAAGTCCAGAAATTC+AGG + chr3_2:8842352-8842371 Msa0394260:intron 40.0%
TGCAGAAGTCCAGAAATTCA+GGG + chr3_2:8842353-8842372 Msa0394260:intron 40.0%
! ACTCGATATCTGAAACTCCA+AGG - chr3_2:8842529-8842548 None:intergenic 40.0%
!! AAACCTTTTGGAAAGCAAGC+TGG + chr3_2:8842563-8842582 Msa0394260:CDS 40.0%
AGGAAACTTACCACTACTCA+AGG - chr3_2:8842646-8842665 None:intergenic 40.0%
! GTGTTGGCAGATTCTTCTTT+AGG - chr3_2:8842666-8842685 None:intergenic 40.0%
! ACGAGATCGAGGATCTTTTT+AGG + chr3_2:8842709-8842728 Msa0394260:CDS 40.0%
!! CGAGGATCTTTTTAGGCAAA+AGG + chr3_2:8842716-8842735 Msa0394260:CDS 40.0%
TAAGGTGATGCAGAACTTGA+AGG + chr3_2:8842770-8842789 Msa0394260:CDS 40.0%
TGATGCAGAACTTGAAGGTT+GGG + chr3_2:8842775-8842794 Msa0394260:CDS 40.0%
! GAGAACCTGTGCTTGATTTT+CGG - chr3_2:8842844-8842863 None:intergenic 40.0%
GATCATAGATGCAGAGAGTA+AGG + chr3_2:8842869-8842888 Msa0394260:CDS 40.0%
GAAGAACAAAGCAGAAGAGT+TGG + chr3_2:8842902-8842921 Msa0394260:CDS 40.0%
! GCTGCAGAAAAGAGTATGTA+AGG + chr3_2:8842968-8842987 Msa0394260:CDS 40.0%
! CACAACAACCCCAGAATTTT+GGG - chr3_2:8843063-8843082 None:intergenic 40.0%
TTACCCTTCTTTCTTAGGGT+AGG + chr3_2:8843184-8843203 Msa0394260:three_prime_UTR 40.0%
TACCCTTCTTTCTTAGGGTA+GGG + chr3_2:8843185-8843204 Msa0394260:three_prime_UTR 40.0%
TGTTGCTGAATTGGGTAGTG+AGG + chr3_2:8839586-8839605 Msa0394260:CDS 45.0%
GAGGAAGCTGTGAATTCCAA+AGG + chr3_2:8839605-8839624 Msa0394260:CDS 45.0%
GGAAGCTGTGAATTCCAAAG+GGG + chr3_2:8839607-8839626 Msa0394260:CDS 45.0%
!!! TCCGGTAAGGTTTTGAAGAG+GGG + chr3_2:8839713-8839732 Msa0394260:CDS 45.0%
ACCCCTCTTCAAAACCTTAC+CGG - chr3_2:8839717-8839736 None:intergenic 45.0%
! TGAAAATCTGCGGGGTGTTA+AGG + chr3_2:8839766-8839785 Msa0394260:CDS 45.0%
TAGAATCCGTACTAGAACCC+CGG - chr3_2:8839853-8839872 None:intergenic 45.0%
!! GACTGATTCGGAGAATAGTG+AGG + chr3_2:8839904-8839923 Msa0394260:CDS 45.0%
CCTTTCTCATGCCTCATCTT+CGG - chr3_2:8839965-8839984 None:intergenic 45.0%
ATTGAGAGCTCTGCAAAACC+TGG + chr3_2:8840058-8840077 Msa0394260:CDS 45.0%
TCGAGATCCAACTATAGGCA+AGG + chr3_2:8840139-8840158 Msa0394260:CDS 45.0%
GGTAACCCCCATGTTTATGA+TGG + chr3_2:8840199-8840218 Msa0394260:CDS 45.0%
AACCCCCATGTTTATGATGG+AGG + chr3_2:8840202-8840221 Msa0394260:CDS 45.0%
TTCACCAAGGAAGATGAAGC+TGG + chr3_2:8840256-8840275 Msa0394260:CDS 45.0%
TGGCGAAGATGAAGATCTAC+AGG + chr3_2:8840294-8840313 Msa0394260:CDS 45.0%
ATTCTGCGGCAAATCAGTCT+TGG + chr3_2:8840320-8840339 Msa0394260:CDS 45.0%
TTCTGCGGCAAATCAGTCTT+GGG + chr3_2:8840321-8840340 Msa0394260:CDS 45.0%
GATCTTCAGCACTTGTAGAC+TGG - chr3_2:8840375-8840394 None:intergenic 45.0%
CTCCTGATAGACTCGATCAA+AGG - chr3_2:8840397-8840416 None:intergenic 45.0%
AACCTTCTTCAAGTGCTTCC+TGG - chr3_2:8840432-8840451 None:intergenic 45.0%
TAAACGGAGAATGAGCACCT+TGG + chr3_2:8841185-8841204 Msa0394260:intron 45.0%
ACTGCTGGAGAAACTTTCCA+AGG - chr3_2:8841205-8841224 None:intergenic 45.0%
CATGACTTGAGAGGTCCATT+TGG + chr3_2:8841323-8841342 Msa0394260:intron 45.0%
! TTGACTTGATGGGGAGATAG+AGG + chr3_2:8841375-8841394 Msa0394260:intron 45.0%
TGACTTGATGGGGAGATAGA+GGG + chr3_2:8841376-8841395 Msa0394260:intron 45.0%
TGTTTAGAGAAAAGGCAGGG+TGG + chr3_2:8841642-8841661 Msa0394260:intron 45.0%
TCTTCCTCAACGTCAAGCAA+TGG - chr3_2:8841776-8841795 None:intergenic 45.0%
TCTTCCTCAACGTCAAGCAA+TGG - chr3_2:8841776-8841795 None:intergenic 45.0%
GGTATCACTGCTGTTGATCT+TGG + chr3_2:8842438-8842457 Msa0394260:CDS 45.0%
GGAACTTGAAGCAGCTTGAT+TGG - chr3_2:8842508-8842527 None:intergenic 45.0%
! TCAAGCTGCTTCAAGTTCCT+TGG + chr3_2:8842509-8842528 Msa0394260:CDS 45.0%
TGCTTGCTTCGAAGGATTCT+AGG + chr3_2:8842601-8842620 Msa0394260:CDS 45.0%
CTTGAAACAGCCTTGAGTAG+TGG + chr3_2:8842633-8842652 Msa0394260:CDS 45.0%
AGAAGTAGAGTACGAGATCG+AGG + chr3_2:8842698-8842717 Msa0394260:CDS 45.0%
TAGGCAAAAGGTTGAAGCTG+AGG + chr3_2:8842728-8842747 Msa0394260:CDS 45.0%
TGAATACCTAGCCATCGCTA+AGG + chr3_2:8842752-8842771 Msa0394260:CDS 45.0%
GTGATGCAGAACTTGAAGGT+TGG + chr3_2:8842774-8842793 Msa0394260:CDS 45.0%
GATGCAGAACTTGAAGGTTG+GGG + chr3_2:8842776-8842795 Msa0394260:CDS 45.0%
ACTGTCCGAAAATCAAGCAC+AGG + chr3_2:8842836-8842855 Msa0394260:CDS 45.0%
! GCACAACAACCCCAGAATTT+TGG - chr3_2:8843064-8843083 None:intergenic 45.0%
ACCCTTCTTTCTTAGGGTAG+GGG + chr3_2:8843186-8843205 Msa0394260:three_prime_UTR 45.0%
TCCCCTACCCTAAGAAAGAA+GGG - chr3_2:8843190-8843209 None:intergenic 45.0%
ATCCCCTACCCTAAGAAAGA+AGG - chr3_2:8843191-8843210 None:intergenic 45.0%
GGATTTGGGAAGTGAATCGG+TGG + chr3_2:8839457-8839476 Msa0394260:CDS 50.0%
!! TTCCAAAGGGGCACCAAGAA+AGG + chr3_2:8839619-8839638 Msa0394260:CDS 50.0%
!! TCCAAAGGGGCACCAAGAAA+GGG + chr3_2:8839620-8839639 Msa0394260:CDS 50.0%
!! GAGTGCTGATGAATCCGGTA+AGG + chr3_2:8839700-8839719 Msa0394260:CDS 50.0%
AAGAGGGGTTTATCTGGGTC+TGG + chr3_2:8839728-8839747 Msa0394260:CDS 50.0%
AGAGGGGTTTATCTGGGTCT+GGG + chr3_2:8839729-8839748 Msa0394260:CDS 50.0%
ATGGGTCTTCGAGTGCGTTT+GGG + chr3_2:8839798-8839817 Msa0394260:CDS 50.0%
! TTTCTGATGGGCATGCGATC+CGG + chr3_2:8839831-8839850 Msa0394260:CDS 50.0%
CCGAAGATGAGGCATGAGAA+AGG + chr3_2:8839962-8839981 Msa0394260:CDS 50.0%
ATGAGAAAGGCCGTGGTAGT+AGG + chr3_2:8839975-8839994 Msa0394260:CDS 50.0%
TCGGCTCAAAAGGTTCAGCA+AGG + chr3_2:8840025-8840044 Msa0394260:CDS 50.0%
AGGTTCAGCAAGGAAAGGGA+TGG + chr3_2:8840035-8840054 Msa0394260:CDS 50.0%
!! GTCCAGGAAGCACTTGAAGA+AGG + chr3_2:8840427-8840446 Msa0394260:CDS 50.0%
GACTTGATGGGGAGATAGAG+GGG + chr3_2:8841377-8841396 Msa0394260:intron 50.0%
ACTTGATGGGGAGATAGAGG+GGG + chr3_2:8841378-8841397 Msa0394260:intron 50.0%
GATGTAGATCAGATGGGGGA+TGG + chr3_2:8841749-8841768 Msa0394260:intron 50.0%
TGGTCCATTGCTTGACGTTG+AGG + chr3_2:8841769-8841788 Msa0394260:intron 50.0%
GATGTAGATCAGATGGGGGA+TGG + chr3_2:8841749-8841768 Msa0394260:intron 50.0%
TGGTCCATTGCTTGACGTTG+AGG + chr3_2:8841769-8841788 Msa0394260:intron 50.0%
CACTTAGCTGAGTCGTCTTC+TGG - chr3_2:8842402-8842421 None:intergenic 50.0%
AAGTGTAGCAGTGCATCTGC+TGG + chr3_2:8842417-8842436 Msa0394260:CDS 50.0%
! CCTCCAGCTTGCTTTCCAAA+AGG - chr3_2:8842569-8842588 None:intergenic 50.0%
!! CCTTTTGGAAAGCAAGCTGG+AGG + chr3_2:8842566-8842585 Msa0394260:CDS 50.0%
GAAGAATCTGCCAACACCCT+AGG + chr3_2:8842669-8842688 Msa0394260:CDS 50.0%
GTTCTGCATCACCTTAGCGA+TGG - chr3_2:8842766-8842785 None:intergenic 50.0%
!! ACCCTTTCTTGGTGCCCCTT+TGG - chr3_2:8839624-8839643 None:intergenic 55.0%
GATGGGTCTTCGAGTGCGTT+TGG + chr3_2:8839797-8839816 Msa0394260:CDS 55.0%
! TTCTGATGGGCATGCGATCC+GGG + chr3_2:8839832-8839851 Msa0394260:CDS 55.0%
! TGCGATCCGGGGTTCTAGTA+CGG + chr3_2:8839844-8839863 Msa0394260:CDS 55.0%
CAGCTAGTGAGCCGAAGATG+AGG + chr3_2:8839951-8839970 Msa0394260:CDS 55.0%
ATGAGGCATGAGAAAGGCCG+TGG + chr3_2:8839968-8839987 Msa0394260:CDS 55.0%
GAGAGCTCTGCAAAACCTGG+AGG + chr3_2:8840061-8840080 Msa0394260:CDS 55.0%
TCTGCAAAACCTGGAGGCAG+TGG + chr3_2:8840067-8840086 Msa0394260:CDS 55.0%
TTGACTCTTCCACTGCCTCC+AGG - chr3_2:8840079-8840098 None:intergenic 55.0%
CGAGTCTATCAGGAGCCTTC+AGG + chr3_2:8840402-8840421 Msa0394260:CDS 55.0%
AGCAAGCTGGAGGAGTTGCA+AGG + chr3_2:8842576-8842595 Msa0394260:CDS 55.0%
GCATCACCTTAGCGATGGCT+AGG - chr3_2:8842761-8842780 None:intergenic 55.0%
! GGGGCACCAAGAAAGGGTGT+TGG + chr3_2:8839626-8839645 Msa0394260:CDS 60.0%
! TCTGATGGGCATGCGATCCG+GGG + chr3_2:8839833-8839852 Msa0394260:CDS 60.0%
GTGCTTCCTGGACAGCCTGA+AGG - chr3_2:8840420-8840439 None:intergenic 60.0%
GCAAGGCGTGCTTGCTTCGA+AGG + chr3_2:8842593-8842612 Msa0394260:CDS 60.0%
CAGGAGCCTTCAGGCTGTCC+AGG + chr3_2:8840411-8840430 Msa0394260:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 8839108 8843348 8839108 ID=Msa0394260;Name=Msa0394260
chr3_2 mRNA 8839108 8843348 8839108 ID=Msa0394260-mRNA-1;Parent=Msa0394260;Name=Msa0394260-mRNA-1;_AED=0.00;_eAED=0.00;_QI=173|1|1|1|0.5|0.33|3|257|575
chr3_2 exon 8839108 8839258 8839108 ID=Msa0394260-mRNA-1:exon:2271;Parent=Msa0394260-mRNA-1
chr3_2 exon 8839433 8840448 8839433 ID=Msa0394260-mRNA-1:exon:2272;Parent=Msa0394260-mRNA-1
chr3_2 exon 8842358 8843348 8842358 ID=Msa0394260-mRNA-1:exon:2273;Parent=Msa0394260-mRNA-1
chr3_2 five_prime_UTR 8839108 8839258 8839108 ID=Msa0394260-mRNA-1:five_prime_utr;Parent=Msa0394260-mRNA-1
chr3_2 five_prime_UTR 8839433 8839454 8839433 ID=Msa0394260-mRNA-1:five_prime_utr;Parent=Msa0394260-mRNA-1
chr3_2 CDS 8839455 8840448 8839455 ID=Msa0394260-mRNA-1:cds;Parent=Msa0394260-mRNA-1
chr3_2 CDS 8842358 8843091 8842358 ID=Msa0394260-mRNA-1:cds;Parent=Msa0394260-mRNA-1
chr3_2 three_prime_UTR 8843092 8843348 8843092 ID=Msa0394260-mRNA-1:three_prime_utr;Parent=Msa0394260-mRNA-1
Gene Sequence

>Msa0394260

ATGGATTTGGGAAGTGAATCGGTGGAAGAGAATGAAGTGAATCACGATGAAAATGGAATCAAGGGTTCTGATGAGAAATTAGGGTTTCAATTTGATGGCAATTTTGGTGTAAAACCAGATCAAGAAGGAATTGTTGCTGAATTGGGTAGTGAGGAAGCTGTGAATTCCAAAGGGGCACCAAGAAAGGGTGTTGGATTGAAGAAATGGAAGAGAATTAGGAGGAATGTTGTTAGGGATCATAATTCGAGTGCTGATGAATCCGGTAAGGTTTTGAAGAGGGGTTTATCTGGGTCTGGGAATGCGAATTTGAGTGAAAATCTGCGGGGTGTTAAGGAAAAAAACGATGGGTCTTCGAGTGCGTTTGGGAATGTAGTGTTTTCTGATGGGCATGCGATCCGGGGTTCTAGTACGGATTCTAGATATGCAGTTGGATCTGGTTTTGTTGTTGGGACTGATTCGGAGAATAGTGAGGATAGGAGTAGTAAGTCTTCTACTGCAGCTAGTGAGCCGAAGATGAGGCATGAGAAAGGCCGTGGTAGTAGGAATACGAATTCGAAGAATTTAGTGAACTCGGCTCAAAAGGTTCAGCAAGGAAAGGGATGGATTGAGAGCTCTGCAAAACCTGGAGGCAGTGGAAGAGTCAAGTTTGAGAAGGAAAATTCTATTTCCAGTTTGGATTCAGATTCGAGATCCAACTATAGGCAAGGTGTCTTTAGTACGGTTACTAGTAATGGAAAACATAGTGGTAACCCCCATGTTTATGATGGAGGTAACGATGGTGAAGCTCATACTAATGAACATTTCACCAAGGAAGATGAAGCTGGTTATGGCAATGAAAATGGCGAAGATGAAGATCTACAGGAGAATTCTGCGGCAAATCAGTCTTGGGATGCTCCTGAAGAAAAAAGTGAGAACAACCAGTCTACAAGTGCTGAAGATCCTTTGATCGAGTCTATCAGGAGCCTTCAGGCTGTCCAGGAAGCACTTGAAGAAGAAGTCCAGAAATTCAGGGAGATTGATACTGAAGTTGTCTCACCAGAAGACGACTCAGCTAAGTGTAGCAGTGCATCTGCTGGTATCACTGCTGTTGATCTTGGACTTCATAAGTCATTCTTATCTAGTCATTCTAGTGCAGATGAAACCAATCAAGCTGCTTCAAGTTCCTTGGAGTTTCAGATATCGAGTTTGAAACAACATGTAAACCTTTTGGAAAGCAAGCTGGAGGAGTTGCAAGGCGTGCTTGCTTCGAAGGATTCTAGGATAGTTGAACTTGAAACAGCCTTGAGTAGTGGTAAGTTTCCTAAAGAAGAATCTGCCAACACCCTAGGTTATAAAGAAGTAGAGTACGAGATCGAGGATCTTTTTAGGCAAAAGGTTGAAGCTGAGGTTGAATACCTAGCCATCGCTAAGGTGATGCAGAACTTGAAGGTTGGGGCAGATTTACAATTTACATTATTGGAAGAACAAGAGAAACTGTCCGAAAATCAAGCACAGGTTCTCAACAAGATCATAGATGCAGAGAGTAAGGCTTCAGTGCTGAAGAACAAAGCAGAAGAGTTGGAAAAATACTGTGATGATAGTTTAGTAATTGAGGAGTCTTTTTTGCTGCAGAAAAGAGTATGTAAGGTGTCATTTTATCTTTTCCTACAGTTCATGATGTTAATCTTGTTCTTTTGGTTTCTTTTGTCACAGTTATCCCAAAATTCTGGGGTTGTTGTGCCCACTTAA

Protein sequence

>Msa0394260

MDLGSESVEENEVNHDENGIKGSDEKLGFQFDGNFGVKPDQEGIVAELGSEEAVNSKGAPRKGVGLKKWKRIRRNVVRDHNSSADESGKVLKRGLSGSGNANLSENLRGVKEKNDGSSSAFGNVVFSDGHAIRGSSTDSRYAVGSGFVVGTDSENSEDRSSKSSTAASEPKMRHEKGRGSRNTNSKNLVNSAQKVQQGKGWIESSAKPGGSGRVKFEKENSISSLDSDSRSNYRQGVFSTVTSNGKHSGNPHVYDGGNDGEAHTNEHFTKEDEAGYGNENGEDEDLQENSAANQSWDAPEEKSENNQSTSAEDPLIESIRSLQAVQEALEEEVQKFREIDTEVVSPEDDSAKCSSASAGITAVDLGLHKSFLSSHSSADETNQAASSSLEFQISSLKQHVNLLESKLEELQGVLASKDSRIVELETALSSGKFPKEESANTLGYKEVEYEIEDLFRQKVEAEVEYLAIAKVMQNLKVGADLQFTLLEEQEKLSENQAQVLNKIIDAESKASVLKNKAEELEKYCDDSLVIEESFLLQKRVCKVSFYLFLQFMMLILFFWFLLSQLSQNSGVVVPT*