AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0620910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0620910 MtrunA17_Chr1g0193141 97.626 337 8 0 1 337 1 337 0.0 652
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0620910 AT5G26770.1 69.970 333 95 2 7 337 6 335 1.16e-163 460
Msa0620910 AT5G26770.2 69.970 333 95 2 7 337 6 335 1.16e-163 460
Msa0620910 AT5G26770.6 65.449 356 95 3 7 337 6 358 3.38e-158 447
Msa0620910 AT5G26770.5 65.449 356 95 3 7 337 6 358 3.38e-158 447
Msa0620910 AT5G26770.3 63.964 333 95 3 7 337 6 315 7.77e-144 409
Msa0620910 AT1G09470.1 61.468 327 125 1 11 337 11 336 3.37e-136 390
Msa0620910 AT5G26770.4 69.286 280 86 0 7 286 6 285 5.25e-134 383
Msa0620910 AT3G05830.3 63.018 338 122 3 1 337 1 336 1.91e-132 381
Msa0620910 AT3G05830.1 63.018 338 122 3 1 337 1 336 1.91e-132 381
Msa0620910 AT1G09470.2 60.245 327 128 2 11 337 11 335 1.62e-129 374
Msa0620910 AT1G09470.3 60.245 327 128 2 11 337 11 335 1.62e-129 374
Msa0620910 AT3G05830.2 60.684 351 122 4 1 337 1 349 5.56e-129 372
Msa0620910 AT1G09483.1 67.925 106 32 2 233 337 1 105 2.38e-42 142

Find 86 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCAATTGCTTTCATTTAT+AGG 0.131120 4_2:-72703978 Msa0620910:five_prime_UTR
TTCAGTTGATCCTTTGTTAA+AGG 0.155858 4_2:-72703826 Msa0620910:CDS
TGATCGCCATCAGTGCTTTC+TGG 0.163697 4_2:-72700314 Msa0620910:three_prime_UTR
AAAAGCAAAATCAGAATTTC+TGG 0.195429 4_2:-72700864 Msa0620910:CDS
TGGAAAATTGCAGAAGAAAT+TGG 0.210886 4_2:-72703413 Msa0620910:CDS
AAGATTATGGAATTGGAAAT+TGG 0.237242 4_2:-72703433 Msa0620910:CDS
TAGAATTGAGCGTGATATTA+TGG 0.255210 4_2:-72701687 Msa0620910:CDS
TTCATCTTCTCTATATTCTT+AGG 0.270281 4_2:+72701599 None:intergenic
AAGTGCCAGTGGTAACTTTA+TGG 0.272422 4_2:+72700486 None:intergenic
TTGTGAACTGCGAAAATTAT+TGG 0.291074 4_2:-72701633 Msa0620910:CDS
GTCTTTAGCTTCTGAGTTGA+AGG 0.308444 4_2:-72703763 Msa0620910:CDS
AACAAACTTGAGAAGGTATT+AGG 0.310751 4_2:+72700731 None:intergenic
AGAGACAAATGCAAAGATTA+TGG 0.320596 4_2:-72703446 Msa0620910:CDS
TCATTCCCTACATGTGAATA+TGG 0.331565 4_2:+72704015 None:intergenic
AAATGCAAAGATTATGGAAT+TGG 0.333888 4_2:-72703440 Msa0620910:CDS
TACCTTCTCAAGTTTGTTGT+AGG 0.355203 4_2:-72700726 Msa0620910:three_prime_UTR
CTTCTGAGTTGAAGGAGCTT+AGG 0.360827 4_2:-72703755 Msa0620910:CDS
CAGAATTTCTGGGACACCTC+TGG 0.394928 4_2:-72700853 Msa0620910:CDS
AATATTGATTCAGCACATAA+AGG 0.405506 4_2:-72701948 Msa0620910:intron
TAATTTACAGAAGGATCTTA+AGG 0.405711 4_2:-72701750 Msa0620910:CDS
ATGGAGGCTCTCGCAAAATC+CGG 0.409252 4_2:-72701668 Msa0620910:CDS
GAAACAACGACGTGCTGATC+AGG 0.420227 4_2:-72701350 Msa0620910:CDS
GAATAAGCTACTGGTTGTTA+AGG 0.427044 4_2:-72701579 Msa0620910:CDS
AACATCAAAATCAGATCCTA+TGG 0.435412 4_2:+72703940 None:intergenic
GCACATGTGAAATGCTTTCA+AGG 0.438918 4_2:+72700367 Msa0620900:three_prime_UTR
TTAAGATCATGTCTGCTCAT+TGG 0.439395 4_2:-72701526 Msa0620910:CDS
GAAGGAGCTTAGGAGTCGTT+TGG 0.443244 4_2:-72703745 Msa0620910:CDS
CGCAAAATCCGGGGAGAACA+AGG 0.444877 4_2:-72701657 Msa0620910:CDS
AGTTATAGTTTCTTTAACAT+AGG 0.452026 4_2:+72703707 None:intergenic
ATCAACTGAAGCTTGTTTGT+CGG 0.455999 4_2:+72703839 None:intergenic
TAGGAGTCGTTTGGCTTCAC+AGG 0.456534 4_2:-72703736 Msa0620910:CDS
ATGCAGTATGTAGCAGCATC+AGG 0.463598 4_2:-72700632 Msa0620910:three_prime_UTR
CGAGCAGATGGGAGAGCGGC+GGG 0.466355 4_2:-72700950 Msa0620910:intron
TTGATGTTTACATACAAAAG+AGG 0.471456 4_2:-72703925 Msa0620910:five_prime_UTR
CTCAGACGCGCAAACTTCAA+AGG 0.472445 4_2:-72701276 Msa0620910:CDS
CAACTACCATATTCACATGT+AGG 0.472938 4_2:-72704021 Msa0620910:five_prime_UTR
GTCTATGTCCATGCTAGTCT+TGG 0.474536 4_2:-72700815 Msa0620910:CDS
GGCACTTACCATACATATGC+TGG 0.475939 4_2:-72700470 Msa0620910:three_prime_UTR
TGATGAAATAGTTAGACTTA+AGG 0.477477 4_2:-72701555 Msa0620910:CDS
GACTAAGGAATTAGAATCAC+AGG 0.477639 4_2:-72701495 Msa0620910:intron
ACAAGGATTCTTGTATATAG+AGG 0.478425 4_2:-72700756 Msa0620910:three_prime_UTR
TGTTTATCGCATCATTAAGC+TGG 0.479296 4_2:-72700534 Msa0620910:three_prime_UTR
TTCAAACTCTTCTGCTGAGA+AGG 0.479809 4_2:-72703365 Msa0620910:intron
GACTAAAACCAGCATATGTA+TGG 0.484529 4_2:+72700462 None:intergenic
TGGAGGCTCTCGCAAAATCC+GGG 0.485779 4_2:-72701667 Msa0620910:CDS
AAGTTTCATTTCAACAAAGT+TGG 0.487593 4_2:-72703891 Msa0620910:five_prime_UTR
TTCACAATCCTTGTTCTCCC+CGG 0.489475 4_2:+72701649 None:intergenic
GAACTTAAAGATCAATTAGC+AGG 0.491351 4_2:-72700913 Msa0620910:CDS
AGGAAAGCAACAAACAGTTT+CGG 0.509158 4_2:-72700893 Msa0620910:CDS
GATTCAGCACATAAAGGAGT+TGG 0.509544 4_2:-72701942 Msa0620910:intron
ATTTATAGGACTTTGATCCC+TGG 0.512765 4_2:-72703964 Msa0620910:five_prime_UTR
TCATTCAAATCCTTTAACAA+AGG 0.512856 4_2:+72703816 None:intergenic
TATGTCCATGCTAGTCTTGG+TGG 0.514229 4_2:-72700812 Msa0620910:CDS
ACTGCGAAAATTATTGGATG+AGG 0.521280 4_2:-72701627 Msa0620910:CDS
TCATTGGAAGCTCAAGACTA+AGG 0.525004 4_2:-72701510 Msa0620910:CDS
CTCCTACAACAAACTTGAGA+AGG 0.526108 4_2:+72700724 None:intergenic
ACATACAAAAGAGGCAAAAG+AGG 0.527488 4_2:-72703916 Msa0620910:five_prime_UTR
GACTTTGATCCCTGGTCCAT+AGG 0.536840 4_2:-72703956 Msa0620910:five_prime_UTR
AGAGAAGATGAATAAGCTAC+TGG 0.539996 4_2:-72701588 Msa0620910:CDS
TAAAGAAACTATAACTAGAC+AGG 0.541041 4_2:-72703700 Msa0620910:intron
AAAGCAAAATCAGAATTTCT+GGG 0.542452 4_2:-72700863 Msa0620910:CDS
AACTACCATATTCACATGTA+GGG 0.544276 4_2:-72704020 Msa0620910:five_prime_UTR
ACAGAAGGATCTTAAGGCAA+GGG 0.550488 4_2:-72701744 Msa0620910:CDS
AAAATCAGATCCTATGGACC+AGG 0.554506 4_2:+72703946 None:intergenic
TACAGAAGGATCTTAAGGCA+AGG 0.554800 4_2:-72701745 Msa0620910:CDS
AAAGCATTTCACATGTGCGT+AGG 0.555326 4_2:-72700362 Msa0620910:three_prime_UTR
CTGCGCTGATTGAGCTGATG+CGG 0.556870 4_2:+72701868 None:intergenic
TCAGACGCGCAAACTTCAAA+GGG 0.558261 4_2:-72701275 Msa0620910:intron
TTGTTTGTCGGAAATTGACA+TGG 0.561919 4_2:+72703851 None:intergenic
AAACCATTCCTTTGTTCACA+AGG 0.563095 4_2:-72700773 Msa0620910:three_prime_UTR
AATCCTTGTGAACAAAGGAA+TGG 0.563482 4_2:+72700770 None:intergenic
GCAGCTTGATAATTTACAGA+AGG 0.573568 4_2:-72701759 Msa0620910:CDS
GAAGTTGGAATTCTGTCTGC+AGG 0.579748 4_2:-72701308 Msa0620910:CDS
TATGTGAAACTAATCTGTGT+AGG 0.606402 4_2:-72700584 Msa0620910:three_prime_UTR
TAGTTCTCTAAGAGAGCATG+AGG 0.613433 4_2:-72701804 Msa0620910:CDS
ACAAGAATCCTTGTGAACAA+AGG 0.613946 4_2:+72700765 None:intergenic
TCGAGCAGATGGGAGAGCGG+CGG 0.617603 4_2:-72700951 Msa0620910:intron
GAGGAACGCGTAATTAGACT+AGG 0.621102 4_2:-72701785 Msa0620910:CDS
AAATACCACCAAGACTAGCA+TGG 0.627363 4_2:+72700807 None:intergenic
TGTGACCATAAAGTTACCAC+TGG 0.639898 4_2:-72700491 Msa0620910:three_prime_UTR
AATTGAGCGTGATATTATGG+AGG 0.642028 4_2:-72701684 Msa0620910:CDS
TGTTTGTCGGAAATTGACAT+GGG 0.647558 4_2:+72703852 None:intergenic
ATATGTATGGTAAGTGCCAG+TGG 0.650551 4_2:+72700475 None:intergenic
AAATCAGATCCTATGGACCA+GGG 0.663062 4_2:+72703947 None:intergenic
GGAGGCTCTCGCAAAATCCG+GGG 0.664732 4_2:-72701666 Msa0620910:CDS
GCTCGTAATAGCTAGAGCAA+CGG 0.671851 4_2:-72701903 Msa0620910:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAATAACAAAAAGTTT+AGG - chr4_2:72701465-72701484 Msa0620910:intron 10.0%
!!! TTATTTTGTTTTTCTCTTTT+TGG - chr4_2:72700856-72700875 Msa0620910:CDS 15.0%
!! TATAAAAGAAAAAAGGTAAT+AGG + chr4_2:72701448-72701467 None:intergenic 15.0%
!!! ACATATTTTACTTAACAATA+AGG - chr4_2:72701550-72701569 Msa0620910:CDS 15.0%
!!! TTAATTCTTCAATTTTTTCT+AGG - chr4_2:72701686-72701705 Msa0620910:CDS 15.0%
!!! AAATTTTTGTATCAGTTTTA+CGG - chr4_2:72701820-72701839 Msa0620910:CDS 15.0%
!!! AATTATTTGACCATTTTTTT+GGG - chr4_2:72703317-72703336 Msa0620910:intron 15.0%
!!! ATAGTTTATTTTTGCTTACA+TGG - chr4_2:72700390-72700409 Msa0620910:three_prime_UTR 20.0%
!! ATTCAATTGCTTTCATTTAT+AGG - chr4_2:72700481-72700500 Msa0620910:three_prime_UTR 20.0%
!! AGTTATAGTTTCTTTAACAT+AGG + chr4_2:72700755-72700774 None:intergenic 20.0%
!!! AAGTTACAATTTTTTTAGCA+TGG + chr4_2:72700882-72700901 None:intergenic 20.0%
!! AAAATTGTAACTTTGATTGT+AGG - chr4_2:72700889-72700908 Msa0620910:CDS 20.0%
!!! TATTTTAGTCTTGCAATTTA+TGG - chr4_2:72700969-72700988 Msa0620910:intron 20.0%
!!! TTATGGATTATATTTTTCAC+AGG - chr4_2:72700986-72701005 Msa0620910:intron 20.0%
!!! AAATTAATTTTAATGTAGGG+AGG - chr4_2:72701757-72701776 Msa0620910:CDS 20.0%
!! GAACTTATAAATAAGAATTC+TGG + chr4_2:72702009-72702028 None:intergenic 20.0%
!! ACTTATAAGATATGATGTAT+AGG + chr4_2:72702188-72702207 None:intergenic 20.0%
!! TTTAAAGGTTAATGCATAAT+TGG + chr4_2:72702254-72702273 None:intergenic 20.0%
!!! TTTTTCTTCATTAAGGAATA+AGG + chr4_2:72702339-72702358 None:intergenic 20.0%
!!! AATCCATTTAAGTTTATTGA+TGG - chr4_2:72703067-72703086 Msa0620910:intron 20.0%
!! AATCCATCAATAAACTTAAA+TGG + chr4_2:72703073-72703092 None:intergenic 20.0%
!!! GAATTATTTGACCATTTTTT+TGG - chr4_2:72703316-72703335 Msa0620910:intron 20.0%
!!! TTATACAAGTTTTCATTGAT+GGG - chr4_2:72703386-72703405 Msa0620910:CDS 20.0%
!!! ATAACTTGTTTTCACGAAAA+GGG + chr4_2:72700329-72700348 Msa0620900:three_prime_UTR 25.0%
!!! AATAACTTGTTTTCACGAAA+AGG + chr4_2:72700330-72700349 Msa0620900:three_prime_UTR 25.0%
! TTGATGTTTACATACAAAAG+AGG - chr4_2:72700534-72700553 Msa0620910:three_prime_UTR 25.0%
! AAGTTTCATTTCAACAAAGT+TGG - chr4_2:72700568-72700587 Msa0620910:three_prime_UTR 25.0%
! TCATTCAAATCCTTTAACAA+AGG + chr4_2:72700646-72700665 None:intergenic 25.0%
! TAAAGAAACTATAACTAGAC+AGG - chr4_2:72700759-72700778 Msa0620910:three_prime_UTR 25.0%
! AAATGCAAAGATTATGGAAT+TGG - chr4_2:72701019-72701038 Msa0620910:intron 25.0%
! AAGATTATGGAATTGGAAAT+TGG - chr4_2:72701026-72701045 Msa0620910:intron 25.0%
!!! TACCTTATTATTTCTTTTCG+TGG - chr4_2:72701133-72701152 Msa0620910:intron 25.0%
! AACCACGAAAAGAAATAATA+AGG + chr4_2:72701138-72701157 None:intergenic 25.0%
! GTAACAAGATCCTAAAAAAT+GGG + chr4_2:72701354-72701373 None:intergenic 25.0%
! AGTAACAAGATCCTAAAAAA+TGG + chr4_2:72701355-72701374 None:intergenic 25.0%
! AATTCAGTTCATATCTACAA+GGG + chr4_2:72701608-72701627 None:intergenic 25.0%
! ATTAACATCCTAGTTAGAAA+GGG + chr4_2:72701671-72701690 None:intergenic 25.0%
! AATTAACATCCTAGTTAGAA+AGG + chr4_2:72701672-72701691 None:intergenic 25.0%
!!! ATAATTTTTCTAGCCAGTAA+TGG - chr4_2:72702104-72702123 Msa0620910:intron 25.0%
! CTAGAGTACAATCTATTTAA+AGG + chr4_2:72702269-72702288 None:intergenic 25.0%
!! TGTCATCTTTTTCTTCATTA+AGG + chr4_2:72702346-72702365 None:intergenic 25.0%
! ATTCTTTGTAACTAAAGTCT+CGG - chr4_2:72702464-72702483 Msa0620910:intron 25.0%
!!! AATATTGATTCAGCACATAA+AGG - chr4_2:72702511-72702530 Msa0620910:intron 25.0%
! TAATTTACAGAAGGATCTTA+AGG - chr4_2:72702709-72702728 Msa0620910:intron 25.0%
! TTCATCTTCTCTATATTCTT+AGG + chr4_2:72702863-72702882 None:intergenic 25.0%
! TGATGAAATAGTTAGACTTA+AGG - chr4_2:72702904-72702923 Msa0620910:intron 25.0%
! ATATGAACGAGTAATAACAA+GGG + chr4_2:72703010-72703029 None:intergenic 25.0%
! TATATGAACGAGTAATAACA+AGG + chr4_2:72703011-72703030 None:intergenic 25.0%
! TATTACTCGTTCATATACTT+AGG - chr4_2:72703014-72703033 Msa0620910:intron 25.0%
! ATTACTCGTTCATATACTTA+GGG - chr4_2:72703015-72703034 Msa0620910:intron 25.0%
!!! AAACTTAAATGGATTAGCTA+TGG + chr4_2:72703062-72703081 None:intergenic 25.0%
! TAAATTCTTGCCCAAAAAAA+TGG + chr4_2:72703330-72703349 None:intergenic 25.0%
! GATAAGAAACACTACAAATA+AGG - chr4_2:72703358-72703377 Msa0620910:intron 25.0%
!! CTTATACAAGTTTTCATTGA+TGG - chr4_2:72703385-72703404 Msa0620910:CDS 25.0%
!!! GAAATTCTGATTTTGCTTTT+CGG + chr4_2:72703595-72703614 None:intergenic 25.0%
! AAAAGCAAAATCAGAATTTC+TGG - chr4_2:72703595-72703614 Msa0620910:intron 25.0%
! AAAGCAAAATCAGAATTTCT+GGG - chr4_2:72703596-72703615 Msa0620910:intron 25.0%
AACTACCATATTCACATGTA+GGG - chr4_2:72700439-72700458 Msa0620910:three_prime_UTR 30.0%
AACATCAAAATCAGATCCTA+TGG + chr4_2:72700522-72700541 None:intergenic 30.0%
TTCAGTTGATCCTTTGTTAA+AGG - chr4_2:72700633-72700652 Msa0620910:three_prime_UTR 30.0%
! AGGATCAATCATTCTACTTT+TGG - chr4_2:72700909-72700928 Msa0620910:CDS 30.0%
AGAGACAAATGCAAAGATTA+TGG - chr4_2:72701013-72701032 Msa0620910:intron 30.0%
TGGAAAATTGCAGAAGAAAT+TGG - chr4_2:72701046-72701065 Msa0620910:intron 30.0%
!! TTCATTTTAGCATATCCCAT+TGG - chr4_2:72701390-72701409 Msa0620910:intron 30.0%
AACAAAAAGTTTAGGTGAGA+TGG - chr4_2:72701473-72701492 Msa0620910:intron 30.0%
CTATGTCTTAAGACTTTCTT+TGG + chr4_2:72701511-72701530 None:intergenic 30.0%
TAAGGTCTTTACATTAGTAG+CGG - chr4_2:72701568-72701587 Msa0620910:CDS 30.0%
GAATTCAGTTCATATCTACA+AGG + chr4_2:72701609-72701628 None:intergenic 30.0%
! ATAAGAGAGTTTTCCAACAA+TGG + chr4_2:72701639-72701658 None:intergenic 30.0%
TGTGGTAATTCAGAAAAATG+TGG + chr4_2:72701712-72701731 None:intergenic 30.0%
!! TTGATTTGGTAATAAGCTTG+TGG + chr4_2:72701730-72701749 None:intergenic 30.0%
! TTTTAATGTAGGGAGGAAAT+TGG - chr4_2:72701764-72701783 Msa0620910:CDS 30.0%
TTTAATGTAGGGAGGAAATT+GGG - chr4_2:72701765-72701784 Msa0620910:CDS 30.0%
! AGTGATTTTCCAACTTAGAA+TGG + chr4_2:72701797-72701816 None:intergenic 30.0%
GGGTCATTTGAATATACAAT+TGG + chr4_2:72701884-72701903 None:intergenic 30.0%
ATAAGTGACTTCAATAGTGA+AGG + chr4_2:72702031-72702050 None:intergenic 30.0%
TCACTTATTGTACTGCAATA+TGG - chr4_2:72702043-72702062 Msa0620910:intron 30.0%
TTATTGTACTGCAATATGGA+AGG - chr4_2:72702047-72702066 Msa0620910:intron 30.0%
ATCACGTGAGTATATTCAAT+AGG - chr4_2:72702073-72702092 Msa0620910:intron 30.0%
TCACGTGAGTATATTCAATA+GGG - chr4_2:72702074-72702093 Msa0620910:intron 30.0%
TCATTACTTCATCGATAACT+TGG + chr4_2:72702219-72702238 None:intergenic 30.0%
! TCGATGAAGTAATGAACTTT+TGG - chr4_2:72702224-72702243 Msa0620910:intron 30.0%
!! ATCTAATGCAGTTTTGGTAA+TGG + chr4_2:72702380-72702399 None:intergenic 30.0%
CTTCGAACTTCAAAAAGAAT+TGG - chr4_2:72702622-72702641 Msa0620910:intron 30.0%
TAGAATTGAGCGTGATATTA+TGG - chr4_2:72702772-72702791 Msa0620910:intron 30.0%
TTGTGAACTGCGAAAATTAT+TGG - chr4_2:72702826-72702845 Msa0620910:intron 30.0%
!! GGCTTTCTTTTCTTTATTTG+AGG - chr4_2:72703036-72703055 Msa0620910:intron 30.0%
AGGAAATGCTTAAATGTTTG+TGG - chr4_2:72703247-72703266 Msa0620910:intron 30.0%
!!! CTGTTATAGATCTGCTTTTT+GGG - chr4_2:72703285-72703304 Msa0620910:intron 30.0%
! TGATTTCACTAAGTTGACTA+AGG + chr4_2:72703467-72703486 None:intergenic 30.0%
GAACTTAAAGATCAATTAGC+AGG - chr4_2:72703546-72703565 Msa0620910:intron 30.0%
ACAAGGATTCTTGTATATAG+AGG - chr4_2:72703703-72703722 Msa0620910:CDS 30.0%
!! AACAAACTTGAGAAGGTATT+AGG + chr4_2:72703731-72703750 None:intergenic 30.0%
!!! GAGTAAAGAGAAGTTTTAGA+AGG - chr4_2:72703755-72703774 Msa0620910:CDS 30.0%
TATGTGAAACTAATCTGTGT+AGG - chr4_2:72703875-72703894 Msa0620910:five_prime_UTR 30.0%
! TAGGTGCGCTTATATATTTT+AGG - chr4_2:72703894-72703913 Msa0620910:five_prime_UTR 30.0%
! GGTTAAAAAGTCAAGTTGTT+TGG - chr4_2:72704118-72704137 Msa0620910:five_prime_UTR 30.0%
CAACTACCATATTCACATGT+AGG - chr4_2:72700438-72700457 Msa0620910:three_prime_UTR 35.0%
TCATTCCCTACATGTGAATA+TGG + chr4_2:72700447-72700466 None:intergenic 35.0%
ATTTATAGGACTTTGATCCC+TGG - chr4_2:72700495-72700514 Msa0620910:three_prime_UTR 35.0%
ACATACAAAAGAGGCAAAAG+AGG - chr4_2:72700543-72700562 Msa0620910:three_prime_UTR 35.0%
TGTTTGTCGGAAATTGACAT+GGG + chr4_2:72700610-72700629 None:intergenic 35.0%
TTGTTTGTCGGAAATTGACA+TGG + chr4_2:72700611-72700630 None:intergenic 35.0%
! ATCAACTGAAGCTTGTTTGT+CGG + chr4_2:72700623-72700642 None:intergenic 35.0%
!!! TTCTACTTTTGGAGTCTTTG+TGG - chr4_2:72700920-72700939 Msa0620910:CDS 35.0%
AGAAAAAAATGAGCAGCTTC+AGG - chr4_2:72701070-72701089 Msa0620910:intron 35.0%
CGTGGTTTATGAATATCTCT+TGG - chr4_2:72701151-72701170 Msa0620910:intron 35.0%
GAATCGTGCAAAACAAAAAG+TGG + chr4_2:72701214-72701233 None:intergenic 35.0%
!!! GTTTGCTTTTCTAGCTGAAA+TGG - chr4_2:72701253-72701272 Msa0620910:intron 35.0%
!!! ACACTAGATGCCCATTTTTT+AGG - chr4_2:72701341-72701360 Msa0620910:CDS 35.0%
GGGATATGCTAAAATGAAAG+AGG + chr4_2:72701388-72701407 None:intergenic 35.0%
AGAAGGTTGAGTAGATACTT+TGG - chr4_2:72701422-72701441 Msa0620910:intron 35.0%
GAATTCTTATCGACCATTGT+TGG - chr4_2:72701623-72701642 Msa0620910:CDS 35.0%
GGAAAACTCTCTTATTCTTG+TGG - chr4_2:72701644-72701663 Msa0620910:CDS 35.0%
TGAGTATATTCAATAGGGAC+TGG - chr4_2:72702079-72702098 Msa0620910:intron 35.0%
GAGTATATTCAATAGGGACT+GGG - chr4_2:72702080-72702099 Msa0620910:intron 35.0%
! GTCAGAATCTAATGCAGTTT+TGG + chr4_2:72702386-72702405 None:intergenic 35.0%
CTATGTACATAATGTTCCGT+TGG + chr4_2:72702423-72702442 None:intergenic 35.0%
!!! CTTTTTGAAGTTCGAAGCAT+TGG + chr4_2:72702619-72702638 None:intergenic 35.0%
! GCAGCTTGATAATTTACAGA+AGG - chr4_2:72702700-72702719 Msa0620910:intron 35.0%
AATTGAGCGTGATATTATGG+AGG - chr4_2:72702775-72702794 Msa0620910:intron 35.0%
ACTGCGAAAATTATTGGATG+AGG - chr4_2:72702832-72702851 Msa0620910:intron 35.0%
AGAGAAGATGAATAAGCTAC+TGG - chr4_2:72702871-72702890 Msa0620910:intron 35.0%
! GAATAAGCTACTGGTTGTTA+AGG - chr4_2:72702880-72702899 Msa0620910:intron 35.0%
TTAAGATCATGTCTGCTCAT+TGG - chr4_2:72702933-72702952 Msa0620910:intron 35.0%
GACTAAGGAATTAGAATCAC+AGG - chr4_2:72702964-72702983 Msa0620910:intron 35.0%
TAATAACAAGGGCAAAGATC+AGG + chr4_2:72702999-72703018 None:intergenic 35.0%
! GATGGATTTCAAAACACAGT+TGG - chr4_2:72703085-72703104 Msa0620910:intron 35.0%
!! GAAAAAGAGAGTGTTGAAGT+TGG - chr4_2:72703136-72703155 Msa0620910:intron 35.0%
!!! GCACTCATTTTGTGTCATTT+AGG - chr4_2:72703227-72703246 Msa0620910:intron 35.0%
TGTTTGTGGTTACAGTGAAT+TGG - chr4_2:72703261-72703280 Msa0620910:intron 35.0%
GTTTGTGGTTACAGTGAATT+GGG - chr4_2:72703262-72703281 Msa0620910:intron 35.0%
!! GCTGTTATAGATCTGCTTTT+TGG - chr4_2:72703284-72703303 Msa0620910:intron 35.0%
!! TTTTCATTGATGGGCATGAT+TGG - chr4_2:72703395-72703414 Msa0620910:CDS 35.0%
AGGAAAGCAACAAACAGTTT+CGG - chr4_2:72703566-72703585 Msa0620910:intron 35.0%
! CATCACAATTTTGAATCCAG+AGG + chr4_2:72703625-72703644 None:intergenic 35.0%
!! TCTTGGTGGTATTTTCAAAG+CGG - chr4_2:72703661-72703680 Msa0620910:intron 35.0%
AAACCATTCCTTTGTTCACA+AGG - chr4_2:72703686-72703705 Msa0620910:intron 35.0%
AATCCTTGTGAACAAAGGAA+TGG + chr4_2:72703692-72703711 None:intergenic 35.0%
ACAAGAATCCTTGTGAACAA+AGG + chr4_2:72703697-72703716 None:intergenic 35.0%
!! TACCTTCTCAAGTTTGTTGT+AGG - chr4_2:72703733-72703752 Msa0620910:CDS 35.0%
TGTTTATCGCATCATTAAGC+TGG - chr4_2:72703925-72703944 Msa0620910:five_prime_UTR 35.0%
GACTAAAACCAGCATATGTA+TGG + chr4_2:72704000-72704019 None:intergenic 35.0%
AAATCAGATCCTATGGACCA+GGG + chr4_2:72700515-72700534 None:intergenic 40.0%
AAAATCAGATCCTATGGACC+AGG + chr4_2:72700516-72700535 None:intergenic 40.0%
! GTCTTTAGCTTCTGAGTTGA+AGG - chr4_2:72700696-72700715 Msa0620910:three_prime_UTR 40.0%
!!! TTTTGGAGTCTTTGTGGTTG+TGG - chr4_2:72700926-72700945 Msa0620910:CDS 40.0%
! TTTGGAGTCTTTGTGGTTGT+GGG - chr4_2:72700927-72700946 Msa0620910:CDS 40.0%
TTCAAACTCTTCTGCTGAGA+AGG - chr4_2:72701094-72701113 Msa0620910:intron 40.0%
!! TAGCATATCCCATTGGTCTT+TGG - chr4_2:72701397-72701416 Msa0620910:intron 40.0%
GACTTTCTTTGGCCAAGTAA+AGG + chr4_2:72701500-72701519 None:intergenic 40.0%
TGCAAATATGGGCACAACAT+AGG + chr4_2:72701958-72701977 None:intergenic 40.0%
AAGAATTCTGGCAGCATCTA+TGG + chr4_2:72701997-72702016 None:intergenic 40.0%
!! TTTTCTAGCCAGTAATGGAG+AGG - chr4_2:72702109-72702128 Msa0620910:intron 40.0%
GATAAGATCCTCTCCATTAC+TGG + chr4_2:72702120-72702139 None:intergenic 40.0%
! ACTAGTTCTCTGTTGACCAA+CGG - chr4_2:72702404-72702423 Msa0620910:intron 40.0%
GATTCAGCACATAAAGGAGT+TGG - chr4_2:72702517-72702536 Msa0620910:intron 40.0%
! TAGTTCTCTAAGAGAGCATG+AGG - chr4_2:72702655-72702674 Msa0620910:intron 40.0%
TACAGAAGGATCTTAAGGCA+AGG - chr4_2:72702714-72702733 Msa0620910:intron 40.0%
ACAGAAGGATCTTAAGGCAA+GGG - chr4_2:72702715-72702734 Msa0620910:intron 40.0%
TCATTGGAAGCTCAAGACTA+AGG - chr4_2:72702949-72702968 Msa0620910:intron 40.0%
GACTAAGGATGTTCAGATGA+TGG + chr4_2:72703452-72703471 None:intergenic 40.0%
!! TGTATGTGTTTTCGAGCAGA+TGG - chr4_2:72703497-72703516 Msa0620910:intron 40.0%
!! GTATGTGTTTTCGAGCAGAT+GGG - chr4_2:72703498-72703517 Msa0620910:intron 40.0%
AAATACCACCAAGACTAGCA+TGG + chr4_2:72703655-72703674 None:intergenic 40.0%
CTCCTACAACAAACTTGAGA+AGG + chr4_2:72703738-72703757 None:intergenic 40.0%
TGTGACCATAAAGTTACCAC+TGG - chr4_2:72703968-72703987 Msa0620910:five_prime_UTR 40.0%
AAGTGCCAGTGGTAACTTTA+TGG + chr4_2:72703976-72703995 None:intergenic 40.0%
ATATGTATGGTAAGTGCCAG+TGG + chr4_2:72703987-72704006 None:intergenic 40.0%
GCACATGTGAAATGCTTTCA+AGG + chr4_2:72704095-72704114 None:intergenic 40.0%
! AAAGCATTTCACATGTGCGT+AGG - chr4_2:72704097-72704116 Msa0620910:five_prime_UTR 40.0%
!! GAAAAACCAGAAAGCACTGA+TGG + chr4_2:72704154-72704173 None:intergenic 40.0%
! CTTCTGAGTTGAAGGAGCTT+AGG - chr4_2:72700704-72700723 Msa0620910:three_prime_UTR 45.0%
TTGGAGTCTTTGTGGTTGTG+GGG - chr4_2:72700928-72700947 Msa0620910:CDS 45.0%
CCTTCTCACCAAAGACCAAT+GGG + chr4_2:72701408-72701427 None:intergenic 45.0%
ACCTTCTCACCAAAGACCAA+TGG + chr4_2:72701409-72701428 None:intergenic 45.0%
AGGTGAGATGGACCTTTACT+TGG - chr4_2:72701485-72701504 Msa0620910:intron 45.0%
CTTGTGGTCCCTTTCTAACT+AGG - chr4_2:72701660-72701679 Msa0620910:CDS 45.0%
TGTAGGGAGGAAATTGGGAT+TGG - chr4_2:72701770-72701789 Msa0620910:CDS 45.0%
!! GGGATTGGTCCATTCTAAGT+TGG - chr4_2:72701785-72701804 Msa0620910:CDS 45.0%
AAACTACCAACGCTCTAGCA+CGG + chr4_2:72701910-72701929 None:intergenic 45.0%
GGGTAGCATGGTGCAAATAT+GGG + chr4_2:72701969-72701988 None:intergenic 45.0%
TGGGTAGCATGGTGCAAATA+TGG + chr4_2:72701970-72701989 None:intergenic 45.0%
TCTATGGCAATTGGGTAGCA+TGG + chr4_2:72701981-72702000 None:intergenic 45.0%
TGGCAGCATCTATGGCAATT+GGG + chr4_2:72701989-72702008 None:intergenic 45.0%
GCTCGTAATAGCTAGAGCAA+CGG - chr4_2:72702556-72702575 Msa0620910:intron 45.0%
GAGGAACGCGTAATTAGACT+AGG - chr4_2:72702674-72702693 Msa0620910:intron 45.0%
TTCACAATCCTTGTTCTCCC+CGG + chr4_2:72702813-72702832 None:intergenic 45.0%
GAAGTTGGAATTCTGTCTGC+AGG - chr4_2:72703151-72703170 Msa0620910:intron 45.0%
TCAGACGCGCAAACTTCAAA+GGG - chr4_2:72703184-72703203 Msa0620910:intron 45.0%
! GTCTATGTCCATGCTAGTCT+TGG - chr4_2:72703644-72703663 Msa0620910:intron 45.0%
!! TATGTCCATGCTAGTCTTGG+TGG - chr4_2:72703647-72703666 Msa0620910:intron 45.0%
ATGCAGTATGTAGCAGCATC+AGG - chr4_2:72703827-72703846 Msa0620910:CDS 45.0%
GGCACTTACCATACATATGC+TGG - chr4_2:72703989-72704008 Msa0620910:five_prime_UTR 45.0%
!!! ATGCTGGTTTTAGTCGCTGA+TGG - chr4_2:72704005-72704024 Msa0620910:five_prime_UTR 45.0%
!! TTATTATTATAAAAGAAAAA+AGG + chr4_2:72701455-72701474 None:intergenic 5.0%
!!! TTAATTTTAATTTTTTGATT+TGG + chr4_2:72701744-72701763 None:intergenic 5.0%
!!! ATTAAAATTAATTTTAATGT+AGG - chr4_2:72701753-72701772 Msa0620910:CDS 5.0%
!!! TTAAAATTAATTTTAATGTA+GGG - chr4_2:72701754-72701773 Msa0620910:CDS 5.0%
GACTTTGATCCCTGGTCCAT+AGG - chr4_2:72700503-72700522 Msa0620910:three_prime_UTR 50.0%
GAAGGAGCTTAGGAGTCGTT+TGG - chr4_2:72700714-72700733 Msa0620910:three_prime_UTR 50.0%
! TAGGAGTCGTTTGGCTTCAC+AGG - chr4_2:72700723-72700742 Msa0620910:three_prime_UTR 50.0%
TCTTTGTGGTTGTGGGGTCA+AGG - chr4_2:72700934-72700953 Msa0620910:CDS 50.0%
!! CCCATTGGTCTTTGGTGAGA+AGG - chr4_2:72701405-72701424 Msa0620910:intron 50.0%
AACTACCAACGCTCTAGCAC+GGG + chr4_2:72701909-72701928 None:intergenic 50.0%
CTGGCAGCATCTATGGCAAT+TGG + chr4_2:72701990-72702009 None:intergenic 50.0%
ATGGAGGCTCTCGCAAAATC+CGG - chr4_2:72702791-72702810 Msa0620910:intron 50.0%
! GAAACAACGACGTGCTGATC+AGG - chr4_2:72703109-72703128 Msa0620910:intron 50.0%
CTCAGACGCGCAAACTTCAA+AGG - chr4_2:72703183-72703202 Msa0620910:intron 50.0%
!! TTTTCGAGCAGATGGGAGAG+CGG - chr4_2:72703505-72703524 Msa0620910:intron 50.0%
!! CAGAATTTCTGGGACACCTC+TGG - chr4_2:72703606-72703625 Msa0620910:intron 50.0%
TGATCGCCATCAGTGCTTTC+TGG - chr4_2:72704145-72704164 Msa0620910:five_prime_UTR 50.0%
!! CTGCGCTGATTGAGCTGATG+CGG + chr4_2:72702594-72702613 None:intergenic 55.0%
TGGAGGCTCTCGCAAAATCC+GGG - chr4_2:72702792-72702811 Msa0620910:intron 55.0%
CGCAAAATCCGGGGAGAACA+AGG - chr4_2:72702802-72702821 Msa0620910:intron 55.0%
CCAACGCTCTAGCACGGGAA+GGG + chr4_2:72701904-72701923 None:intergenic 60.0%
ACCAACGCTCTAGCACGGGA+AGG + chr4_2:72701905-72701924 None:intergenic 60.0%
GGAGGCTCTCGCAAAATCCG+GGG - chr4_2:72702793-72702812 Msa0620910:intron 60.0%
CCCTTCCCGTGCTAGAGCGT+TGG - chr4_2:72701901-72701920 Msa0620910:CDS 65.0%
TCGAGCAGATGGGAGAGCGG+CGG - chr4_2:72703508-72703527 Msa0620910:intron 65.0%
CGAGCAGATGGGAGAGCGGC+GGG - chr4_2:72703509-72703528 Msa0620910:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 72700307 72704174 72700307 ID=Msa0620910;Name=Msa0620910
chr4_2 mRNA 72700307 72704174 72700307 ID=Msa0620910-mRNA-1;Parent=Msa0620910;Name=Msa0620910-mRNA-1;_AED=0.02;_eAED=0.02;_QI=303|1|1|1|1|1|5|488|337
chr4_2 exon 72700307 72700965 72700307 ID=Msa0620910-mRNA-1:exon:21746;Parent=Msa0620910-mRNA-1
chr4_2 exon 72701276 72701377 72701276 ID=Msa0620910-mRNA-1:exon:21745;Parent=Msa0620910-mRNA-1
chr4_2 exon 72701496 72701957 72701496 ID=Msa0620910-mRNA-1:exon:21744;Parent=Msa0620910-mRNA-1
chr4_2 exon 72703366 72703473 72703366 ID=Msa0620910-mRNA-1:exon:21743;Parent=Msa0620910-mRNA-1
chr4_2 exon 72703701 72704174 72703701 ID=Msa0620910-mRNA-1:exon:21742;Parent=Msa0620910-mRNA-1
chr4_2 five_prime_UTR 72703872 72704174 72703872 ID=Msa0620910-mRNA-1:five_prime_utr;Parent=Msa0620910-mRNA-1
chr4_2 CDS 72703701 72703871 72703701 ID=Msa0620910-mRNA-1:cds;Parent=Msa0620910-mRNA-1
chr4_2 CDS 72703366 72703473 72703366 ID=Msa0620910-mRNA-1:cds;Parent=Msa0620910-mRNA-1
chr4_2 CDS 72701496 72701957 72701496 ID=Msa0620910-mRNA-1:cds;Parent=Msa0620910-mRNA-1
chr4_2 CDS 72701276 72701377 72701276 ID=Msa0620910-mRNA-1:cds;Parent=Msa0620910-mRNA-1
chr4_2 CDS 72700795 72700965 72700795 ID=Msa0620910-mRNA-1:cds;Parent=Msa0620910-mRNA-1
chr4_2 three_prime_UTR 72700307 72700794 72700307 ID=Msa0620910-mRNA-1:three_prime_utr;Parent=Msa0620910-mRNA-1
Gene Sequence

>Msa0620910

ATGTCAATTTCCGACAAACAAGCTTCAGTTGATCCTTTGTTAAAGGATTTGAATGATAAAAAACAAAGCTTTCGACGAAACGTTGTGTCTTTAGCTTCTGAGTTGAAGGAGCTTAGGAGTCGTTTGGCTTCACAGGAACAATCCTATGTTAAAGAAACTATAACTAGACAGGAAGCAGAGACAAATGCAAAGATTATGGAATTGGAAATTGGAAAATTGCAGAAGAAATTGGAAGAAAAAAATGAGCAGCTTCAGGTTTCAAACTCTTCTGCTGAGAAGCACATAAAGGAGTTGGACGATCTTAGAACACAGCTCGTAATAGCTAGAGCAACGGCAGATTCAAGTGCCGCATCAGCTCAATCAGCGCAGCTCCAATGCTTCGAACTTCAAAAAGAATTGGATGAGAAAAATAGTTCTCTAAGAGAGCATGAGGAACGCGTAATTAGACTAGGCGAGCAGCTTGATAATTTACAGAAGGATCTTAAGGCAAGGGAATCTTCGCAAAAGCAATTGAGAGATGAAGTATTTAGAATTGAGCGTGATATTATGGAGGCTCTCGCAAAATCCGGGGAGAACAAGGATTGTGAACTGCGAAAATTATTGGATGAGGTTTCTCCTAAGAATATAGAGAAGATGAATAAGCTACTGGTTGTTAAGGATGATGAAATAGTTAGACTTAAGGATGAAATTAAGATCATGTCTGCTCATTGGAAGCTCAAGACTAAGGAATTAGAATCACAGTTGGAGAAACAACGACGTGCTGATCAGGATCTGAAAAAGAGAGTGTTGAAGTTGGAATTCTGTCTGCAGGAAGCTCGTTCTCAGACGCGCAAACTTCAAAGGATGGGAGAGCGGCGGGACAAAGCTATTAAAGAACTTAAAGATCAATTAGCAGGAAAGCAACAAACAGTTTCGGATGCCGAAAAGCAAAATCAGAATTTCTGGGACACCTCTGGATTCAAAATTGTGATGTCTATGTCCATGCTAGTCTTGGTGGTATTTTCAAAGCGGTGA

Protein sequence

>Msa0620910

MSISDKQASVDPLLKDLNDKKQSFRRNVVSLASELKELRSRLASQEQSYVKETITRQEAETNAKIMELEIGKLQKKLEEKNEQLQVSNSSAEKHIKELDDLRTQLVIARATADSSAASAQSAQLQCFELQKELDEKNSSLREHEERVIRLGEQLDNLQKDLKARESSQKQLRDEVFRIERDIMEALAKSGENKDCELRKLLDEVSPKNIEKMNKLLVVKDDEIVRLKDEIKIMSAHWKLKTKELESQLEKQRRADQDLKKRVLKLEFCLQEARSQTRKLQRMGERRDKAIKELKDQLAGKQQTVSDAEKQNQNFWDTSGFKIVMSMSMLVLVVFSKR*