AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1121110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1121110 MtrunA17_Chr7g0250241 86.735 490 14 4 1 475 1 454 0.0 817
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1121110 AT2G44140.1 59.375 448 160 7 3 434 1 442 0.0 536
Msa1121110 AT2G44140.3 59.375 448 160 7 3 434 1 442 0.0 536
Msa1121110 AT2G44140.2 61.757 387 129 5 64 434 14 397 5.08e-174 495
Msa1121110 AT2G44140.4 62.983 362 116 4 88 434 1 359 1.56e-168 480
Msa1121110 AT3G59950.1 56.027 448 177 5 3 433 1 445 3.36e-160 462
Msa1121110 AT2G44140.5 59.467 375 145 5 3 376 1 369 2.96e-159 456
Msa1121110 AT3G59950.4 62.050 361 120 2 88 433 1 359 5.61e-155 446
Msa1121110 AT3G59950.5 57.029 377 155 5 3 376 1 373 2.75e-134 393
Msa1121110 AT3G59950.2 55.046 327 144 3 3 327 1 326 5.23e-108 325
Msa1121110 AT3G59950.3 63.008 246 91 0 88 333 1 246 2.56e-104 312

Find 147 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGCTATTTACGTTGTTTC+TGG 0.136184 7_3:+71143060 Msa1121110:CDS
AAGAAAAGTTGAGGAAATTT+TGG 0.152350 7_3:-71140714 None:intergenic
TTATTGGTTCCTTTGGTTCT+TGG 0.178974 7_3:+71143189 Msa1121110:CDS
AGTATACTAGTGATGTTAAT+TGG 0.200002 7_3:+71142479 Msa1121110:CDS
ATTGACATCTTGCAACTATT+TGG 0.209877 7_3:+71142871 Msa1121110:CDS
TTGAACTCATTGTGATTCTT+TGG 0.224858 7_3:+71145143 Msa1121110:three_prime_UTR
TATTGTAGCCCGGCATTTAT+AGG 0.248813 7_3:-71145007 None:intergenic
CGGTTCAATGAGGAGATTTC+AGG 0.252524 7_3:+71142171 Msa1121110:CDS
TTGACCCATCTTTGGCTATT+GGG 0.264886 7_3:+71144663 Msa1121110:CDS
ATTGACCCATCTTTGGCTAT+TGG 0.286177 7_3:+71144662 Msa1121110:CDS
TCCTCAGAGCCTTGGAATCT+TGG 0.287803 7_3:+71143875 Msa1121110:CDS
TGTTTACTCATTTGTTCATA+TGG 0.297579 7_3:+71145173 Msa1121110:three_prime_UTR
AGATTCAATTGACCCATCTT+TGG 0.308612 7_3:+71144655 Msa1121110:CDS
TGTGGCCTTTCAAGGTTCTA+TGG 0.310399 7_3:+71143236 Msa1121110:CDS
ATCGTGAATTGTTGTTCTTC+AGG 0.318462 7_3:-71140691 None:intergenic
CCTCAGAGCCTTGGAATCTT+GGG 0.320464 7_3:+71143876 Msa1121110:CDS
CTTCAAGCTGGTAAAGGTTA+TGG 0.328585 7_3:+71142931 Msa1121110:CDS
TGGTCAACCTTCTTTACATC+TGG 0.335280 7_3:+71142043 Msa1121110:CDS
GGTGCTTCGACATACATTAT+TGG 0.338715 7_3:+71143909 Msa1121110:CDS
CTAGCTGTTGGGTCATGGGT+GGG 0.361496 7_3:+71142955 Msa1121110:CDS
CTTGCTCATTCTTCTCCCTC+TGG 0.367196 7_3:-71143020 None:intergenic
ATGGTCTAGCTGTTGGGTCA+TGG 0.369139 7_3:+71142950 Msa1121110:CDS
GATGGCGATATATGGCTTCT+AGG 0.371719 7_3:+71142235 Msa1121110:CDS
CTAAGGTGTGTGGCCTTTCA+AGG 0.373791 7_3:+71143228 Msa1121110:CDS
GTATACTAGTGATGTTAATT+GGG 0.374403 7_3:+71142480 Msa1121110:CDS
GCCACGTAAAACATAGGATT+TGG 0.374857 7_3:-71141873 None:intergenic
AAGATGGGTCAATTGAATCT+AGG 0.381077 7_3:-71144652 None:intergenic
CGAGCTCTGATGGCGATATA+TGG 0.389524 7_3:+71142227 Msa1121110:CDS
AGATTTCAGGAGCGTGTACT+AGG 0.390219 7_3:+71142184 Msa1121110:CDS
AAACTCTAAACAGCGTTTGC+AGG 0.391047 7_3:-71143133 None:intergenic
AGAAAACATTCCATCTCAAT+AGG 0.395892 7_3:-71145315 None:intergenic
TGGTCTAGCTGTTGGGTCAT+GGG 0.397135 7_3:+71142951 Msa1121110:CDS
CAGTCAGATGCTTGTTGCTC+AGG 0.397178 7_3:+71142519 Msa1121110:CDS
TTTAAATTTCCTCAGAGCCT+TGG 0.405739 7_3:+71143867 Msa1121110:CDS
TTTCAAGGGGCCTAGTTCCT+TGG 0.415808 7_3:+71143154 Msa1121110:CDS
ATATGCCTGCTAATGCTGTT+AGG 0.420047 7_3:-71144626 None:intergenic
AATTGTAGTGGATATTACTT+TGG 0.420454 7_3:+71145265 Msa1121110:three_prime_UTR
GACTTGATAAAGTCAATCTA+AGG 0.424719 7_3:+71143211 Msa1121110:CDS
TAGCTGTTGGGTCATGGGTG+GGG 0.425413 7_3:+71142956 Msa1121110:CDS
AGTTTCCCAAGGCTTCCTTA+TGG 0.427428 7_3:+71142023 Msa1121110:CDS
ACAGTTCATTCTCGAAATAG+TGG 0.430178 7_3:+71142115 Msa1121110:CDS
TATTGAAGGATTTATGTGAT+AGG 0.437062 7_3:+71141906 Msa1121110:CDS
ATTTCACAGCATGAATCAAC+TGG 0.438381 7_3:+71142271 Msa1121110:CDS
AAAGGTTATGGTCTAGCTGT+TGG 0.438899 7_3:+71142943 Msa1121110:CDS
TTCTGCAAGCTTAGTTGCTC+GGG 0.438986 7_3:-71144820 None:intergenic
TGTAAAGAAGGTTGACCATA+AGG 0.441752 7_3:-71142038 None:intergenic
ATTGGTAGCGTACGTGGATA+AGG 0.442501 7_3:-71140761 None:intergenic
GAATTGCCAGTCATCTTCAT+TGG 0.444109 7_3:-71144985 None:intergenic
TTGTTTACCACTGCCAAGTT+TGG 0.446434 7_3:+71145065 Msa1121110:three_prime_UTR
GAATTACTTGTGACTTGCAT+TGG 0.451605 7_3:-71144891 None:intergenic
GCATCTTCAATGCAGACAAC+TGG 0.452358 7_3:-71143111 None:intergenic
GACTGAGCTACAGTGAATAA+TGG 0.459266 7_3:-71144858 None:intergenic
AACCTTCTTCAAGCTGGTAA+AGG 0.461307 7_3:+71142925 Msa1121110:CDS
GTCACAAGTAATTCTGTGTC+AGG 0.467454 7_3:+71144900 Msa1121110:CDS
AATTACTTGTGACTTGCATT+GGG 0.467885 7_3:-71144890 None:intergenic
TCAATATATTCTTTATCCAC+TGG 0.468590 7_3:-71142853 None:intergenic
AGATGGGTCAATTGAATCTA+GGG 0.471278 7_3:-71144651 None:intergenic
AACCTTTACCAGCTTGAAGA+AGG 0.471470 7_3:-71142927 None:intergenic
TGGCTTCATAATGGTATTGA+AGG 0.475033 7_3:+71141892 Msa1121110:exon
CTTCTGCAAGCTTAGTTGCT+CGG 0.477017 7_3:-71144821 None:intergenic
GGTTGACCATAAGGAAGCCT+TGG 0.480154 7_3:-71142029 None:intergenic
TAAAACCCAATAGCCAAAGA+TGG 0.484276 7_3:-71144668 None:intergenic
GTGCCCGCCTCTTCAAAGGC+AGG 0.484347 7_3:+71141986 Msa1121110:CDS
TCTAGCTGTTGGGTCATGGG+TGG 0.486738 7_3:+71142954 Msa1121110:CDS
CTTTGGCAATGTCAAATAAG+TGG 0.491327 7_3:+71145282 Msa1121110:three_prime_UTR
CATGTGCGACACATAGCATA+TGG 0.492479 7_3:-71142979 None:intergenic
TACCAGCTTGAAGAAGGTTG+TGG 0.493797 7_3:-71142921 None:intergenic
TATTGGTGTTCAGAATGATA+AGG 0.494330 7_3:+71143926 Msa1121110:CDS
AAGGTTATGGTCTAGCTGTT+GGG 0.496723 7_3:+71142944 Msa1121110:CDS
TGCAGATATTGACATAAACT+TGG 0.500404 7_3:+71141836 Msa1121110:intron
ATGAACCTTGTTAATGATGC+AGG 0.501355 7_3:+71144960 Msa1121110:CDS
CTGGCAATTCCTATAAATGC+CGG 0.502412 7_3:+71144998 Msa1121110:exon
CTTAAATTCATATTGTAGCC+CGG 0.502439 7_3:-71145017 None:intergenic
GGAATCTTGGGTGGAAAACC+AGG 0.509067 7_3:+71143888 Msa1121110:CDS
CATATGCTATGTGTCGCACA+TGG 0.515009 7_3:+71142980 Msa1121110:CDS
TTGTTTCTGGAGATGAAGAC+GGG 0.517401 7_3:+71143073 Msa1121110:CDS
AGTCGAGCATCAACCAAACT+TGG 0.517655 7_3:-71145078 None:intergenic
ATCCACAACCTTCTTCAAGC+TGG 0.518114 7_3:+71142919 Msa1121110:CDS
GAAACAACGTAAATAGCCAT+TGG 0.522414 7_3:-71143057 None:intergenic
ACGTAAATAGCCATTGGAAG+TGG 0.524642 7_3:-71143051 None:intergenic
GTAGAGGTGTCCAAGGAACT+AGG 0.529590 7_3:-71143164 None:intergenic
GTTGACCATAAGGAAGCCTT+GGG 0.529980 7_3:-71142028 None:intergenic
TTGTACCATAGAACCTTGAA+AGG 0.532791 7_3:-71143241 None:intergenic
TGCCCGCCTCTTCAAAGGCA+GGG 0.539052 7_3:+71141987 Msa1121110:CDS
GACCCTGCCTTTGAAGAGGC+GGG 0.540202 7_3:-71141989 None:intergenic
TGGCAATTCCTATAAATGCC+GGG 0.541666 7_3:+71144999 Msa1121110:exon
TCAGGTGCCCGCCTCTTCAA+AGG 0.542478 7_3:+71141982 Msa1121110:CDS
TATACTAGTGATGTTAATTG+GGG 0.543594 7_3:+71142481 Msa1121110:CDS
CTGAGTATTATCAACAATCT+CGG 0.546723 7_3:-71141963 None:intergenic
GCTTAACTTCATGTGGATCA+AGG 0.546867 7_3:-71143956 None:intergenic
ATACATTTAACAGACCTTTG+CGG 0.548501 7_3:-71142363 None:intergenic
TATTCACTGTAGCTCAGTCT+AGG 0.548706 7_3:+71144862 Msa1121110:CDS
GCTGTGAGGAAAGTCGTTAG+TGG 0.549234 7_3:+71142148 Msa1121110:CDS
ATTTGTTCATATGGCTAACC+AGG 0.555159 7_3:+71145182 Msa1121110:three_prime_UTR
AGAATGATGAAGAAAAGTTG+AGG 0.562264 7_3:-71140723 None:intergenic
TATGAAGCCACGTAAAACAT+AGG 0.563367 7_3:-71141879 None:intergenic
AGACTCCTAACAGCATTAGC+AGG 0.564665 7_3:+71144621 Msa1121110:intron
AGCGTGTACTAGGGTCATGC+AGG 0.568179 7_3:+71142194 Msa1121110:CDS
CAGGCACCAATGAAGATGAC+TGG 0.568826 7_3:+71144979 Msa1121110:CDS
TATTGGCTACAAAATTGTAG+TGG 0.569244 7_3:+71145253 Msa1121110:three_prime_UTR
ACTGACGTTTCGAGCTCTGA+TGG 0.571376 7_3:+71142217 Msa1121110:CDS
CAGAGCCTTGGAATCTTGGG+TGG 0.572112 7_3:+71143879 Msa1121110:CDS
TTCACAAATTAGGTAGATCG+TGG 0.572926 7_3:+71142672 Msa1121110:CDS
GCAACTATTTGGTGATTCCG+AGG 0.577389 7_3:+71142882 Msa1121110:CDS
TAGAGTAGTTCCTATTGAGA+TGG 0.579822 7_3:+71145305 Msa1121110:three_prime_UTR
AGGAGAACAGCCACTTCCAA+TGG 0.580099 7_3:+71143041 Msa1121110:CDS
CGAGATTGTTGATAATACTC+AGG 0.584823 7_3:+71141964 Msa1121110:CDS
AAATACCTTAAAAGTTGAGA+AGG 0.586605 7_3:+71140635 Msa1121110:five_prime_UTR
AAAACCCAATAGCCAAAGAT+GGG 0.587146 7_3:-71144667 None:intergenic
GTTGTTTCTGGAGATGAAGA+CGG 0.587333 7_3:+71143072 Msa1121110:CDS
ATAACTGCAAACCTTTGTCT+CGG 0.588650 7_3:-71144694 None:intergenic
TTCATTCTCGAAATAGTGGG+TGG 0.591536 7_3:+71142119 Msa1121110:CDS
GATTTCAGGAGCGTGTACTA+GGG 0.594031 7_3:+71142185 Msa1121110:CDS
TGATCCACATGAAGTTAAGC+CGG 0.594832 7_3:+71143959 Msa1121110:CDS
CAGTTCATTCTCGAAATAGT+GGG 0.596526 7_3:+71142116 Msa1121110:CDS
AATAAAAGTAGAGGTGTCCA+AGG 0.596658 7_3:-71143171 None:intergenic
TGGTGCCTGCATCATTAACA+AGG 0.600444 7_3:-71144965 None:intergenic
AAGGAAATCAGAAATTGAGT+CGG 0.602363 7_3:+71140654 Msa1121110:five_prime_UTR
TAGTGATAGTAAGTTTCCCA+AGG 0.604554 7_3:+71142012 Msa1121110:CDS
AAAGGAACCAATAAAAGTAG+AGG 0.608613 7_3:-71143180 None:intergenic
AAGCTTGCAGAAGAATCAAA+CGG 0.608695 7_3:+71144831 Msa1121110:CDS
CAGAGGGAGAAGAATGAGCA+AGG 0.610636 7_3:+71143021 Msa1121110:CDS
AGACCCTGCCTTTGAAGAGG+CGG 0.611555 7_3:-71141990 None:intergenic
GCATCAACCAAACTTGGCAG+TGG 0.615723 7_3:-71145072 None:intergenic
TGACGACACTAGATTTGAAG+AGG 0.616064 7_3:+71144923 Msa1121110:CDS
CTACAATATGAATTTAAGCA+AGG 0.619697 7_3:+71145022 Msa1121110:three_prime_UTR
ACTAGACCCTGCCTTTGAAG+AGG 0.621051 7_3:-71141993 None:intergenic
CCCAAGATTCCAAGGCTCTG+AGG 0.622974 7_3:-71143876 None:intergenic
TTTAATGTACAATAAATACC+TGG 0.623565 7_3:-71145200 None:intergenic
TTATCAAGTCCAAGAACCAA+AGG 0.627304 7_3:-71143198 None:intergenic
ATATTAATAACTTACCGCAA+AGG 0.627695 7_3:+71142349 Msa1121110:CDS
GGAGATGAAGACGGGGAACG+AGG 0.630304 7_3:+71143081 Msa1121110:CDS
GATGAAGACGGGGAACGAGG+TGG 0.635819 7_3:+71143084 Msa1121110:CDS
ATAATGTATGTCGAAGCACC+TGG 0.644500 7_3:-71143906 None:intergenic
AGTTCTAGCTCGAAACCAGA+GGG 0.648181 7_3:+71143005 Msa1121110:CDS
TCATTCTCGAAATAGTGGGT+GGG 0.651636 7_3:+71142120 Msa1121110:CDS
CATACCGGCTTAACTTCATG+TGG 0.657684 7_3:-71143963 None:intergenic
TAAAGTCAATCTAAGGTGTG+TGG 0.660094 7_3:+71143218 Msa1121110:CDS
AAGTTCTAGCTCGAAACCAG+AGG 0.660548 7_3:+71143004 Msa1121110:CDS
GTGAGGAAAGTCGTTAGTGG+CGG 0.662295 7_3:+71142151 Msa1121110:CDS
GATGGGTCAATTGAATCTAG+GGG 0.666393 7_3:-71144650 None:intergenic
TCGTTAGTGGCGGTTCAATG+AGG 0.671495 7_3:+71142161 Msa1121110:CDS
GTGGAGAAAATCTGTTGACA+AGG 0.675087 7_3:+71142691 Msa1121110:CDS
ACTATTTGGTGATTCCGAGG+CGG 0.686375 7_3:+71142885 Msa1121110:CDS
ATATGCTATGTGTCGCACAT+GGG 0.694790 7_3:+71142981 Msa1121110:CDS
GTGGGTGGGCAGCTGCTGTG+AGG 0.740507 7_3:+71142134 Msa1121110:CDS
TGTTTCTGGAGATGAAGACG+GGG 0.752308 7_3:+71143074 Msa1121110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAAAAATGAATTAAGA+TGG - chr7_3:71140807-71140826 None:intergenic 10.0%
!!! TTCAATATAAATTCTATTTT+GGG + chr7_3:71140915-71140934 Msa1121110:intron 10.0%
!!! TTTTTTTTTTTTGTTTAAGA+TGG + chr7_3:71141095-71141114 Msa1121110:intron 10.0%
!! TTTGAACAAATAATAAAATT+GGG - chr7_3:71141231-71141250 None:intergenic 10.0%
!!! TTTTGAACAAATAATAAAAT+TGG - chr7_3:71141232-71141251 None:intergenic 10.0%
!! TTATTTAAGAATTATGATAA+AGG - chr7_3:71143380-71143399 None:intergenic 10.0%
!! CAAAATAGAATTTATATTGA+AGG - chr7_3:71140916-71140935 None:intergenic 15.0%
!!! CTTCAATATAAATTCTATTT+TGG + chr7_3:71140914-71140933 Msa1121110:intron 15.0%
!! TTGAACAAATAATAAAATTG+GGG - chr7_3:71141230-71141249 None:intergenic 15.0%
!!! AAAAAAAATCAGAGATTTTA+AGG - chr7_3:71142599-71142618 None:intergenic 15.0%
!!! TAATTGATAGTATAAGAAAA+GGG - chr7_3:71143483-71143502 None:intergenic 15.0%
!!! TTTTCTTGCAATTAAAATTA+TGG + chr7_3:71145332-71145351 Msa1121110:three_prime_UTR 15.0%
!! TAATAATCAGCTTATATGTT+TGG + chr7_3:71141784-71141803 Msa1121110:intron 20.0%
!!! TTTTAATATGCATACCTTAT+AGG + chr7_3:71142433-71142452 Msa1121110:intron 20.0%
!!! ACAAAAACAAAGGTATAAAA+AGG - chr7_3:71142756-71142775 None:intergenic 20.0%
!! CACAAAAATAACAAAAACAA+AGG - chr7_3:71142766-71142785 None:intergenic 20.0%
!! ACAAGCATAATCATATAAAA+AGG - chr7_3:71143288-71143307 None:intergenic 20.0%
!! TAAATAAGCCAATATAAACA+TGG + chr7_3:71143393-71143412 Msa1121110:intron 20.0%
!!! GTAATTGATAGTATAAGAAA+AGG - chr7_3:71143484-71143503 None:intergenic 20.0%
!! TATCAAAAAAATGCTGAAAA+AGG - chr7_3:71143998-71144017 None:intergenic 20.0%
!!! AGTTTTGTTTAATTTACAAC+TGG - chr7_3:71144165-71144184 None:intergenic 20.0%
!! AGTTGTAAATTAAACAAAAC+TGG + chr7_3:71144164-71144183 Msa1121110:intron 20.0%
!! ATCACTAAGTACATATTAAA+TGG + chr7_3:71144405-71144424 Msa1121110:intron 20.0%
!! TTTAATGTACAATAAATACC+TGG - chr7_3:71145203-71145222 None:intergenic 20.0%
! AAATACCTTAAAAGTTGAGA+AGG + chr7_3:71140635-71140654 Msa1121110:five_prime_UTR 25.0%
!! AAGAAAAGTTGAGGAAATTT+TGG - chr7_3:71140717-71140736 None:intergenic 25.0%
! TGGAAAATTGAAGAGAATAA+GGG - chr7_3:71140787-71140806 None:intergenic 25.0%
! ATGGAAAATTGAAGAGAATA+AGG - chr7_3:71140788-71140807 None:intergenic 25.0%
!!! TCTCAAAAGATTCCTTTTTT+GGG + chr7_3:71140940-71140959 Msa1121110:intron 25.0%
! AAAAGCCAAATTTGATGAAT+TGG + chr7_3:71141249-71141268 Msa1121110:intron 25.0%
! TGGTTTATGATTGAACATTA+TGG + chr7_3:71141281-71141300 Msa1121110:intron 25.0%
! GCGTAATTTAATCACTTAAT+GGG + chr7_3:71141303-71141322 Msa1121110:intron 25.0%
! TTCTGTTTAGTGGTATATAT+AGG + chr7_3:71141335-71141354 Msa1121110:intron 25.0%
!! TCAACATTAGGACATTTTTA+GGG + chr7_3:71141379-71141398 Msa1121110:intron 25.0%
!!! TGTGGTTTTTAAGAAATATG+GGG - chr7_3:71141419-71141438 None:intergenic 25.0%
!!! GTGTGGTTTTTAAGAAATAT+GGG - chr7_3:71141420-71141439 None:intergenic 25.0%
!!! TGTGTGGTTTTTAAGAAATA+TGG - chr7_3:71141421-71141440 None:intergenic 25.0%
! GTTAAAGTCATACAACAATA+GGG - chr7_3:71141522-71141541 None:intergenic 25.0%
! AGTTAAAGTCATACAACAAT+AGG - chr7_3:71141523-71141542 None:intergenic 25.0%
!! TGTATGACTTTAACTTAACT+TGG + chr7_3:71141528-71141547 Msa1121110:intron 25.0%
!! GTATGACTTTAACTTAACTT+GGG + chr7_3:71141529-71141548 Msa1121110:intron 25.0%
! ACTGCAACACAAAATATAAA+GGG - chr7_3:71141634-71141653 None:intergenic 25.0%
! AACTGCAACACAAAATATAA+AGG - chr7_3:71141635-71141654 None:intergenic 25.0%
! AGATGTTATCTTTACACTAT+TGG + chr7_3:71141749-71141768 Msa1121110:intron 25.0%
! TATTGAAGGATTTATGTGAT+AGG + chr7_3:71141906-71141925 Msa1121110:CDS 25.0%
!! ATTCATGCTGTGAAATTTTA+TGG - chr7_3:71142267-71142286 None:intergenic 25.0%
! ATATTAATAACTTACCGCAA+AGG + chr7_3:71142349-71142368 Msa1121110:CDS 25.0%
! AGTATACTAGTGATGTTAAT+TGG + chr7_3:71142479-71142498 Msa1121110:CDS 25.0%
! GTATACTAGTGATGTTAATT+GGG + chr7_3:71142480-71142499 Msa1121110:CDS 25.0%
! TATACTAGTGATGTTAATTG+GGG + chr7_3:71142481-71142500 Msa1121110:CDS 25.0%
!!! GCATTACTTTTTCACAAATT+AGG + chr7_3:71142662-71142681 Msa1121110:CDS 25.0%
! TATTTATAATTTACAGCCAG+TGG + chr7_3:71142837-71142856 Msa1121110:intron 25.0%
! TCAATATATTCTTTATCCAC+TGG - chr7_3:71142856-71142875 None:intergenic 25.0%
! TTGTGTAAAAGAATCCAAAT+AGG - chr7_3:71143329-71143348 None:intergenic 25.0%
!! ATTCTTTTACACAATAGAAG+TGG + chr7_3:71143335-71143354 Msa1121110:intron 25.0%
! GCAAATTTCCATGTTTATAT+TGG - chr7_3:71143404-71143423 None:intergenic 25.0%
! TTAAAAGTTGACTGCAATAA+AGG - chr7_3:71143852-71143871 None:intergenic 25.0%
! AAAACTGGCATCATATATAA+AGG + chr7_3:71144179-71144198 Msa1121110:intron 25.0%
!! AAAGAGAGTGCAATATATAA+AGG + chr7_3:71144208-71144227 Msa1121110:intron 25.0%
!! GTACATATTAAATGGTTTTC+AGG + chr7_3:71144413-71144432 Msa1121110:intron 25.0%
!!! TTTCAGGTTGTTAATATTAC+TGG + chr7_3:71144429-71144448 Msa1121110:intron 25.0%
!!! TTCAGGTTGTTAATATTACT+GGG + chr7_3:71144430-71144449 Msa1121110:intron 25.0%
! CAAAAATCATCAAAATCATC+TGG - chr7_3:71144798-71144817 None:intergenic 25.0%
! CTACAATATGAATTTAAGCA+AGG + chr7_3:71145022-71145041 Msa1121110:three_prime_UTR 25.0%
! TGTTTACTCATTTGTTCATA+TGG + chr7_3:71145173-71145192 Msa1121110:three_prime_UTR 25.0%
!! CAATTTTGTAGCCAATAAAA+GGG - chr7_3:71145250-71145269 None:intergenic 25.0%
!! ACAATTTTGTAGCCAATAAA+AGG - chr7_3:71145251-71145270 None:intergenic 25.0%
!!! AATTGTAGTGGATATTACTT+TGG + chr7_3:71145265-71145284 Msa1121110:three_prime_UTR 25.0%
! GATTTCCTTCTCAACTTTTA+AGG - chr7_3:71140643-71140662 None:intergenic 30.0%
AAGGAAATCAGAAATTGAGT+CGG + chr7_3:71140654-71140673 Msa1121110:five_prime_UTR 30.0%
AGAATGATGAAGAAAAGTTG+AGG - chr7_3:71140726-71140745 None:intergenic 30.0%
AATTGAAGAGAATAAGGGAT+TGG - chr7_3:71140782-71140801 None:intergenic 30.0%
!!! CTCTCAAAAGATTCCTTTTT+TGG + chr7_3:71140939-71140958 Msa1121110:intron 30.0%
AGATGAAGAAAACCCAAAAA+AGG - chr7_3:71140955-71140974 None:intergenic 30.0%
TCGATCCAATTCATCAAATT+TGG - chr7_3:71141257-71141276 None:intergenic 30.0%
TGATGAATTGGATCGAAATA+TGG + chr7_3:71141261-71141280 Msa1121110:intron 30.0%
GGCGTAATTTAATCACTTAA+TGG + chr7_3:71141302-71141321 Msa1121110:intron 30.0%
! GTCAACATTAGGACATTTTT+AGG + chr7_3:71141378-71141397 Msa1121110:intron 30.0%
! TCCTGAAAAAACACAGTTTT+CGG - chr7_3:71141468-71141487 None:intergenic 30.0%
! TTTAACTTAACTTGGGCTTA+GGG + chr7_3:71141536-71141555 Msa1121110:intron 30.0%
TTCATCAATGCAGATTATGA+TGG + chr7_3:71141662-71141681 Msa1121110:intron 30.0%
! CAGATTATGATGGCATTTTA+GGG + chr7_3:71141672-71141691 Msa1121110:intron 30.0%
TGCAGATATTGACATAAACT+TGG + chr7_3:71141836-71141855 Msa1121110:intron 30.0%
CTGAGTATTATCAACAATCT+CGG - chr7_3:71141966-71141985 None:intergenic 30.0%
TGAAAAACCAGATGTAAAGA+AGG - chr7_3:71142053-71142072 None:intergenic 30.0%
ATACATTTAACAGACCTTTG+CGG - chr7_3:71142366-71142385 None:intergenic 30.0%
CATCTAAACATCGCATAAAA+AGG - chr7_3:71142393-71142412 None:intergenic 30.0%
TGAATATGACAAAGCAGTAT+TGG - chr7_3:71142641-71142660 None:intergenic 30.0%
AATACTGCTTTGTCATATTC+AGG + chr7_3:71142640-71142659 Msa1121110:intron 30.0%
ATTGACATCTTGCAACTATT+TGG + chr7_3:71142871-71142890 Msa1121110:CDS 30.0%
AAAGGAACCAATAAAAGTAG+AGG - chr7_3:71143183-71143202 None:intergenic 30.0%
!!! TCTACTTTTATTGGTTCCTT+TGG + chr7_3:71143182-71143201 Msa1121110:CDS 30.0%
GACTTGATAAAGTCAATCTA+AGG + chr7_3:71143211-71143230 Msa1121110:CDS 30.0%
GATAAAGGAACTTGTCTTTA+CGG - chr7_3:71143365-71143384 None:intergenic 30.0%
! TTGATAGTATAAGAAAAGGG+TGG - chr7_3:71143480-71143499 None:intergenic 30.0%
ACTATCAATTACACCTGTTA+TGG + chr7_3:71143492-71143511 Msa1121110:intron 30.0%
TTTGATTCAATGTCCATAAC+AGG - chr7_3:71143508-71143527 None:intergenic 30.0%
TTAATAGATGTGTCTCTGTA+AGG - chr7_3:71143584-71143603 None:intergenic 30.0%
ACAGAGACACATCTATTAAT+AGG + chr7_3:71143585-71143604 Msa1121110:intron 30.0%
TACATAGCAGAGATAATAAC+CGG + chr7_3:71143679-71143698 Msa1121110:intron 30.0%
TGCTATTATAAACTGTCATC+AGG + chr7_3:71143820-71143839 Msa1121110:intron 30.0%
! TATTGGTGTTCAGAATGATA+AGG + chr7_3:71143926-71143945 Msa1121110:CDS 30.0%
AATTATCGTTATGCAAGTTC+TGG + chr7_3:71144033-71144052 Msa1121110:intron 30.0%
TAGAAAAGACTACACAATGA+TGG + chr7_3:71144277-71144296 Msa1121110:intron 30.0%
TTAAGTTACAACAAACAGCA+AGG - chr7_3:71144342-71144361 None:intergenic 30.0%
! TCAGGTTGTTAATATTACTG+GGG + chr7_3:71144431-71144450 Msa1121110:intron 30.0%
! CAGTGATATGATGATGTATT+AGG - chr7_3:71144468-71144487 None:intergenic 30.0%
! ACAAAGGTTTGCAGTTATTT+TGG + chr7_3:71144699-71144718 Msa1121110:intron 30.0%
! TGGCATAACTAGTTTAATTG+TGG + chr7_3:71144719-71144738 Msa1121110:intron 30.0%
CAACATTGACAAAGTAATGT+CGG - chr7_3:71144771-71144790 None:intergenic 30.0%
! AATTACTTGTGACTTGCATT+GGG - chr7_3:71144893-71144912 None:intergenic 30.0%
CTTAAATTCATATTGTAGCC+CGG - chr7_3:71145020-71145039 None:intergenic 30.0%
! GCACTTTTCAAACGTTTAAT+AGG + chr7_3:71145109-71145128 Msa1121110:three_prime_UTR 30.0%
TTGAACTCATTGTGATTCTT+TGG + chr7_3:71145143-71145162 Msa1121110:three_prime_UTR 30.0%
! TTGTTGATGTACCCTTTTAT+TGG + chr7_3:71145236-71145255 Msa1121110:three_prime_UTR 30.0%
! TATTGGCTACAAAATTGTAG+TGG + chr7_3:71145253-71145272 Msa1121110:three_prime_UTR 30.0%
AGAAAACATTCCATCTCAAT+AGG - chr7_3:71145318-71145337 None:intergenic 30.0%
! ATCGTGAATTGTTGTTCTTC+AGG - chr7_3:71140694-71140713 None:intergenic 35.0%
! TTAACCTTTTCCATCAACGT+TGG + chr7_3:71140882-71140901 Msa1121110:intron 35.0%
! TAAACCAACGTTGATGGAAA+AGG - chr7_3:71140889-71140908 None:intergenic 35.0%
GAGATTATGCTTCTGTTTAG+TGG + chr7_3:71141325-71141344 Msa1121110:intron 35.0%
TGGTATATATAGGATGCCAA+AGG + chr7_3:71141345-71141364 Msa1121110:intron 35.0%
GGTATATATAGGATGCCAAA+GGG + chr7_3:71141346-71141365 Msa1121110:intron 35.0%
GTATATATAGGATGCCAAAG+GGG + chr7_3:71141347-71141366 Msa1121110:intron 35.0%
GATGTGTACTTAATCATGTG+TGG - chr7_3:71141437-71141456 None:intergenic 35.0%
TGATTAAGTACACATCCAGA+TGG + chr7_3:71141441-71141460 Msa1121110:intron 35.0%
! CCTGAAAAAACACAGTTTTC+GGG - chr7_3:71141467-71141486 None:intergenic 35.0%
! CTTTAACTTAACTTGGGCTT+AGG + chr7_3:71141535-71141554 Msa1121110:intron 35.0%
! TTAACTTAACTTGGGCTTAG+GGG + chr7_3:71141537-71141556 Msa1121110:intron 35.0%
! GCAGATTATGATGGCATTTT+AGG + chr7_3:71141671-71141690 Msa1121110:intron 35.0%
GTCAATATCTGCAAGTAAAG+AGG - chr7_3:71141829-71141848 None:intergenic 35.0%
TATGAAGCCACGTAAAACAT+AGG - chr7_3:71141882-71141901 None:intergenic 35.0%
! TGTTTTACGTGGCTTCATAA+TGG + chr7_3:71141883-71141902 Msa1121110:exon 35.0%
! TGGCTTCATAATGGTATTGA+AGG + chr7_3:71141892-71141911 Msa1121110:exon 35.0%
!! CGAGATTGTTGATAATACTC+AGG + chr7_3:71141964-71141983 Msa1121110:CDS 35.0%
TAGTGATAGTAAGTTTCCCA+AGG + chr7_3:71142012-71142031 Msa1121110:CDS 35.0%
TGTAAAGAAGGTTGACCATA+AGG - chr7_3:71142041-71142060 None:intergenic 35.0%
ACAGTTCATTCTCGAAATAG+TGG + chr7_3:71142115-71142134 Msa1121110:CDS 35.0%
CAGTTCATTCTCGAAATAGT+GGG + chr7_3:71142116-71142135 Msa1121110:CDS 35.0%
ATTTCACAGCATGAATCAAC+TGG + chr7_3:71142271-71142290 Msa1121110:CDS 35.0%
CAATTGCATCAAAGCCTATA+AGG - chr7_3:71142450-71142469 None:intergenic 35.0%
!! TTGGTAGTGTTAGTTCGAAA+GGG - chr7_3:71142622-71142641 None:intergenic 35.0%
!! ATTGGTAGTGTTAGTTCGAA+AGG - chr7_3:71142623-71142642 None:intergenic 35.0%
TTCACAAATTAGGTAGATCG+TGG + chr7_3:71142672-71142691 Msa1121110:CDS 35.0%
GAAACAACGTAAATAGCCAT+TGG - chr7_3:71143060-71143079 None:intergenic 35.0%
! ATGGCTATTTACGTTGTTTC+TGG + chr7_3:71143060-71143079 Msa1121110:CDS 35.0%
!! AACGCTGTTTAGAGTTTTCA+AGG + chr7_3:71143139-71143158 Msa1121110:CDS 35.0%
!! ACGCTGTTTAGAGTTTTCAA+GGG + chr7_3:71143140-71143159 Msa1121110:CDS 35.0%
!! AATAAAAGTAGAGGTGTCCA+AGG - chr7_3:71143174-71143193 None:intergenic 35.0%
!! TTGGACACCTCTACTTTTAT+TGG + chr7_3:71143173-71143192 Msa1121110:CDS 35.0%
!! TTATTGGTTCCTTTGGTTCT+TGG + chr7_3:71143189-71143208 Msa1121110:CDS 35.0%
TTATCAAGTCCAAGAACCAA+AGG - chr7_3:71143201-71143220 None:intergenic 35.0%
! TAAAGTCAATCTAAGGTGTG+TGG + chr7_3:71143218-71143237 Msa1121110:CDS 35.0%
TTGTACCATAGAACCTTGAA+AGG - chr7_3:71143244-71143263 None:intergenic 35.0%
GTAAAAGAATCCAAATAGGC+AGG - chr7_3:71143325-71143344 None:intergenic 35.0%
TAGTATAAGAAAAGGGTGGA+AGG - chr7_3:71143476-71143495 None:intergenic 35.0%
AAAGATAGAAACTTCCCTGT+CGG + chr7_3:71143525-71143544 Msa1121110:intron 35.0%
! ACATAGAAGTTTTACCGACA+GGG - chr7_3:71143542-71143561 None:intergenic 35.0%
! AACATAGAAGTTTTACCGAC+AGG - chr7_3:71143543-71143562 None:intergenic 35.0%
TTTAAATTTCCTCAGAGCCT+TGG + chr7_3:71143867-71143886 Msa1121110:CDS 35.0%
AAAAGGATTATCCTGCATAC+CGG - chr7_3:71143981-71144000 None:intergenic 35.0%
! TGAGATGTATTTTCGTGCAT+AGG + chr7_3:71144095-71144114 Msa1121110:intron 35.0%
TTTACAACTGGTGCTCATAT+TGG - chr7_3:71144153-71144172 None:intergenic 35.0%
AAACAGCAAGGAAACCAAAT+AGG - chr7_3:71144330-71144349 None:intergenic 35.0%
AGATGGGTCAATTGAATCTA+GGG - chr7_3:71144654-71144673 None:intergenic 35.0%
AAGATGGGTCAATTGAATCT+AGG - chr7_3:71144655-71144674 None:intergenic 35.0%
AGATTCAATTGACCCATCTT+TGG + chr7_3:71144655-71144674 Msa1121110:CDS 35.0%
AAAACCCAATAGCCAAAGAT+GGG - chr7_3:71144670-71144689 None:intergenic 35.0%
TAAAACCCAATAGCCAAAGA+TGG - chr7_3:71144671-71144690 None:intergenic 35.0%
ATAACTGCAAACCTTTGTCT+CGG - chr7_3:71144697-71144716 None:intergenic 35.0%
! TAACTAGTTTAATTGTGGCG+AGG + chr7_3:71144724-71144743 Msa1121110:intron 35.0%
AAGCTTGCAGAAGAATCAAA+CGG + chr7_3:71144831-71144850 Msa1121110:CDS 35.0%
! GAATTACTTGTGACTTGCAT+TGG - chr7_3:71144894-71144913 None:intergenic 35.0%
ATGAACCTTGTTAATGATGC+AGG + chr7_3:71144960-71144979 Msa1121110:CDS 35.0%
ATTTGTTCATATGGCTAACC+AGG + chr7_3:71145182-71145201 Msa1121110:three_prime_UTR 35.0%
CTTTGGCAATGTCAAATAAG+TGG + chr7_3:71145282-71145301 Msa1121110:three_prime_UTR 35.0%
TAGAGTAGTTCCTATTGAGA+TGG + chr7_3:71145305-71145324 Msa1121110:three_prime_UTR 35.0%
!! TTTCGTCGTTTTCGTTGCAA+AGG + chr7_3:71140856-71140875 Msa1121110:intron 40.0%
!!! CCCGAAAACTGTGTTTTTTC+AGG + chr7_3:71141464-71141483 Msa1121110:intron 40.0%
AAGTTGGACTTCGAGTCAAA+GGG + chr7_3:71141585-71141604 Msa1121110:intron 40.0%
! GCCAAATCCTATGTTTTACG+TGG + chr7_3:71141872-71141891 Msa1121110:five_prime_UTR 40.0%
GCCACGTAAAACATAGGATT+TGG - chr7_3:71141876-71141895 None:intergenic 40.0%
TGGTCAACCTTCTTTACATC+TGG + chr7_3:71142043-71142062 Msa1121110:CDS 40.0%
! TTCATTCTCGAAATAGTGGG+TGG + chr7_3:71142119-71142138 Msa1121110:CDS 40.0%
!! TCATTCTCGAAATAGTGGGT+GGG + chr7_3:71142120-71142139 Msa1121110:CDS 40.0%
GTGGAGAAAATCTGTTGACA+AGG + chr7_3:71142691-71142710 Msa1121110:CDS 40.0%
GAAAATCTGTTGACAAGGTC+AGG + chr7_3:71142696-71142715 Msa1121110:intron 40.0%
GCCTTTGTGTTGAGGTATAA+CGG + chr7_3:71142791-71142810 Msa1121110:intron 40.0%
TGTTGAGGTATAACGGCATT+AGG + chr7_3:71142798-71142817 Msa1121110:intron 40.0%
AACCTTCTTCAAGCTGGTAA+AGG + chr7_3:71142925-71142944 Msa1121110:CDS 40.0%
AACCTTTACCAGCTTGAAGA+AGG - chr7_3:71142930-71142949 None:intergenic 40.0%
CTTCAAGCTGGTAAAGGTTA+TGG + chr7_3:71142931-71142950 Msa1121110:CDS 40.0%
AAAGGTTATGGTCTAGCTGT+TGG + chr7_3:71142943-71142962 Msa1121110:CDS 40.0%
AAGGTTATGGTCTAGCTGTT+GGG + chr7_3:71142944-71142963 Msa1121110:CDS 40.0%
ATATGCTATGTGTCGCACAT+GGG + chr7_3:71142981-71143000 Msa1121110:CDS 40.0%
ACGTAAATAGCCATTGGAAG+TGG - chr7_3:71143054-71143073 None:intergenic 40.0%
!! GTTGTTTCTGGAGATGAAGA+CGG + chr7_3:71143072-71143091 Msa1121110:CDS 40.0%
!! TTGTTTCTGGAGATGAAGAC+GGG + chr7_3:71143073-71143092 Msa1121110:CDS 40.0%
AAACTCTAAACAGCGTTTGC+AGG - chr7_3:71143136-71143155 None:intergenic 40.0%
!! CGCTGTTTAGAGTTTTCAAG+GGG + chr7_3:71143141-71143160 Msa1121110:CDS 40.0%
ATATGTGTTGCCTGCCTATT+TGG + chr7_3:71143312-71143331 Msa1121110:intron 40.0%
CTCTCGTGATGTAACATGAT+TGG + chr7_3:71143629-71143648 Msa1121110:intron 40.0%
AGAGATAATAACCGGTGTGA+TGG + chr7_3:71143687-71143706 Msa1121110:intron 40.0%
ATTATGTGCATCCATCACAC+CGG - chr7_3:71143701-71143720 None:intergenic 40.0%
! ATAATGTATGTCGAAGCACC+TGG - chr7_3:71143909-71143928 None:intergenic 40.0%
GGTGCTTCGACATACATTAT+TGG + chr7_3:71143909-71143928 Msa1121110:CDS 40.0%
GCTTAACTTCATGTGGATCA+AGG - chr7_3:71143959-71143978 None:intergenic 40.0%
TGATCCACATGAAGTTAAGC+CGG + chr7_3:71143959-71143978 Msa1121110:CDS 40.0%
GCAAATGTGATAGCACTTAC+AGG + chr7_3:71144058-71144077 Msa1121110:intron 40.0%
! TGTTCAGACTGTTGCTTGAT+AGG + chr7_3:71144369-71144388 Msa1121110:intron 40.0%
ATATGCCTGCTAATGCTGTT+AGG - chr7_3:71144629-71144648 None:intergenic 40.0%
GATGGGTCAATTGAATCTAG+GGG - chr7_3:71144653-71144672 None:intergenic 40.0%
ATTGACCCATCTTTGGCTAT+TGG + chr7_3:71144662-71144681 Msa1121110:CDS 40.0%
TTGACCCATCTTTGGCTATT+GGG + chr7_3:71144663-71144682 Msa1121110:CDS 40.0%
GACTGAGCTACAGTGAATAA+TGG - chr7_3:71144861-71144880 None:intergenic 40.0%
TATTCACTGTAGCTCAGTCT+AGG + chr7_3:71144862-71144881 Msa1121110:CDS 40.0%
GTCACAAGTAATTCTGTGTC+AGG + chr7_3:71144900-71144919 Msa1121110:CDS 40.0%
TGACGACACTAGATTTGAAG+AGG + chr7_3:71144923-71144942 Msa1121110:CDS 40.0%
GAATTGCCAGTCATCTTCAT+TGG - chr7_3:71144988-71145007 None:intergenic 40.0%
CTGGCAATTCCTATAAATGC+CGG + chr7_3:71144998-71145017 Msa1121110:exon 40.0%
TGGCAATTCCTATAAATGCC+GGG + chr7_3:71144999-71145018 Msa1121110:exon 40.0%
TATTGTAGCCCGGCATTTAT+AGG - chr7_3:71145010-71145029 None:intergenic 40.0%
TTGTTTACCACTGCCAAGTT+TGG + chr7_3:71145065-71145084 Msa1121110:three_prime_UTR 40.0%
!! ATTGGTAGCGTACGTGGATA+AGG - chr7_3:71140764-71140783 None:intergenic 45.0%
GGCGTATAAACCAACGTTGA+TGG - chr7_3:71140895-71140914 None:intergenic 45.0%
GGGCTGGAAAAGTCAACATT+AGG + chr7_3:71141367-71141386 Msa1121110:intron 45.0%
! TTAGGGGATTTTGCTTGGGA+GGG + chr7_3:71141553-71141572 Msa1121110:intron 45.0%
! CAAGTTGGACTTCGAGTCAA+AGG + chr7_3:71141584-71141603 Msa1121110:intron 45.0%
AGTTGGACTTCGAGTCAAAG+GGG + chr7_3:71141586-71141605 Msa1121110:intron 45.0%
AGTTTCCCAAGGCTTCCTTA+TGG + chr7_3:71142023-71142042 Msa1121110:CDS 45.0%
GTTGACCATAAGGAAGCCTT+GGG - chr7_3:71142031-71142050 None:intergenic 45.0%
CGGTTCAATGAGGAGATTTC+AGG + chr7_3:71142171-71142190 Msa1121110:CDS 45.0%
! AGATTTCAGGAGCGTGTACT+AGG + chr7_3:71142184-71142203 Msa1121110:CDS 45.0%
! GATTTCAGGAGCGTGTACTA+GGG + chr7_3:71142185-71142204 Msa1121110:CDS 45.0%
GATGGCGATATATGGCTTCT+AGG + chr7_3:71142235-71142254 Msa1121110:CDS 45.0%
GCCGTTATACCTCAACACAA+AGG - chr7_3:71142795-71142814 None:intergenic 45.0%
! GCAACTATTTGGTGATTCCG+AGG + chr7_3:71142882-71142901 Msa1121110:CDS 45.0%
! ACTATTTGGTGATTCCGAGG+CGG + chr7_3:71142885-71142904 Msa1121110:CDS 45.0%
ATCCACAACCTTCTTCAAGC+TGG + chr7_3:71142919-71142938 Msa1121110:CDS 45.0%
TACCAGCTTGAAGAAGGTTG+TGG - chr7_3:71142924-71142943 None:intergenic 45.0%
CATGTGCGACACATAGCATA+TGG - chr7_3:71142982-71143001 None:intergenic 45.0%
CATATGCTATGTGTCGCACA+TGG + chr7_3:71142980-71142999 Msa1121110:CDS 45.0%
!! AAGTTCTAGCTCGAAACCAG+AGG + chr7_3:71143004-71143023 Msa1121110:CDS 45.0%
!! AGTTCTAGCTCGAAACCAGA+GGG + chr7_3:71143005-71143024 Msa1121110:CDS 45.0%
!! TGTTTCTGGAGATGAAGACG+GGG + chr7_3:71143074-71143093 Msa1121110:CDS 45.0%
GCATCTTCAATGCAGACAAC+TGG - chr7_3:71143114-71143133 None:intergenic 45.0%
TGTGGCCTTTCAAGGTTCTA+TGG + chr7_3:71143236-71143255 Msa1121110:CDS 45.0%
! GTTTTCCACCCAAGATTCCA+AGG - chr7_3:71143887-71143906 None:intergenic 45.0%
!! CATACCGGCTTAACTTCATG+TGG - chr7_3:71143966-71143985 None:intergenic 45.0%
ATGAAGTTAAGCCGGTATGC+AGG + chr7_3:71143967-71143986 Msa1121110:intron 45.0%
ACACAATGATGGCCTAGTAG+TGG + chr7_3:71144288-71144307 Msa1121110:intron 45.0%
AATGATGGCCTAGTAGTGGT+TGG + chr7_3:71144292-71144311 Msa1121110:intron 45.0%
ATGATGGCCTAGTAGTGGTT+GGG + chr7_3:71144293-71144312 Msa1121110:intron 45.0%
GGGAGGAGTGAAATCCTATT+TGG + chr7_3:71144313-71144332 Msa1121110:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr7_3:71144574-71144593 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr7_3:71144575-71144594 None:intergenic 45.0%
AGACTCCTAACAGCATTAGC+AGG + chr7_3:71144621-71144640 Msa1121110:intron 45.0%
TTCTGCAAGCTTAGTTGCTC+GGG - chr7_3:71144823-71144842 None:intergenic 45.0%
CTTCTGCAAGCTTAGTTGCT+CGG - chr7_3:71144824-71144843 None:intergenic 45.0%
TGGTGCCTGCATCATTAACA+AGG - chr7_3:71144968-71144987 None:intergenic 45.0%
AGTCGAGCATCAACCAAACT+TGG - chr7_3:71145081-71145100 None:intergenic 45.0%
!! TAAGGGATTGGTAGCGTACG+TGG - chr7_3:71140770-71140789 None:intergenic 50.0%
ATATAGGATGCCAAAGGGGC+TGG + chr7_3:71141351-71141370 Msa1121110:intron 50.0%
!! GTTGACTTTTCCAGCCCCTT+TGG - chr7_3:71141364-71141383 None:intergenic 50.0%
!! AACACAGTTTTCGGGCCATC+TGG - chr7_3:71141459-71141478 None:intergenic 50.0%
! TGGGCTTAGGGGATTTTGCT+TGG + chr7_3:71141548-71141567 Msa1121110:intron 50.0%
! GGGCTTAGGGGATTTTGCTT+GGG + chr7_3:71141549-71141568 Msa1121110:intron 50.0%
! CTTAGGGGATTTTGCTTGGG+AGG + chr7_3:71141552-71141571 Msa1121110:intron 50.0%
GGGAGGGATGATCATCAAGT+TGG + chr7_3:71141569-71141588 Msa1121110:intron 50.0%
GTTGGACTTCGAGTCAAAGG+GGG + chr7_3:71141587-71141606 Msa1121110:intron 50.0%
TTGGACTTCGAGTCAAAGGG+GGG + chr7_3:71141588-71141607 Msa1121110:intron 50.0%
GGGGGATGGAAAGTCTCATT+TGG + chr7_3:71141606-71141625 Msa1121110:intron 50.0%
! ACTAGACCCTGCCTTTGAAG+AGG - chr7_3:71141996-71142015 None:intergenic 50.0%
GGTTGACCATAAGGAAGCCT+TGG - chr7_3:71142032-71142051 None:intergenic 50.0%
GCTGTGAGGAAAGTCGTTAG+TGG + chr7_3:71142148-71142167 Msa1121110:CDS 50.0%
GTGAGGAAAGTCGTTAGTGG+CGG + chr7_3:71142151-71142170 Msa1121110:CDS 50.0%
TCGTTAGTGGCGGTTCAATG+AGG + chr7_3:71142161-71142180 Msa1121110:CDS 50.0%
! ACTGACGTTTCGAGCTCTGA+TGG + chr7_3:71142217-71142236 Msa1121110:CDS 50.0%
! CGAGCTCTGATGGCGATATA+TGG + chr7_3:71142227-71142246 Msa1121110:CDS 50.0%
! CAGTCAGATGCTTGTTGCTC+AGG + chr7_3:71142519-71142538 Msa1121110:CDS 50.0%
GTGTTTGCGCCTTTGTGTTG+AGG + chr7_3:71142783-71142802 Msa1121110:intron 50.0%
GATAGAAAAAGCAGCCGCCT+CGG - chr7_3:71142902-71142921 None:intergenic 50.0%
ATGGTCTAGCTGTTGGGTCA+TGG + chr7_3:71142950-71142969 Msa1121110:CDS 50.0%
TGGTCTAGCTGTTGGGTCAT+GGG + chr7_3:71142951-71142970 Msa1121110:CDS 50.0%
CTTGCTCATTCTTCTCCCTC+TGG - chr7_3:71143023-71143042 None:intergenic 50.0%
CAGAGGGAGAAGAATGAGCA+AGG + chr7_3:71143021-71143040 Msa1121110:CDS 50.0%
AGGAGAACAGCCACTTCCAA+TGG + chr7_3:71143041-71143060 Msa1121110:CDS 50.0%
TTTCAAGGGGCCTAGTTCCT+TGG + chr7_3:71143154-71143173 Msa1121110:CDS 50.0%
!! GTAGAGGTGTCCAAGGAACT+AGG - chr7_3:71143167-71143186 None:intergenic 50.0%
CTAAGGTGTGTGGCCTTTCA+AGG + chr7_3:71143228-71143247 Msa1121110:CDS 50.0%
GTGTCTCTGTAAGGCAGATG+AGG - chr7_3:71143575-71143594 None:intergenic 50.0%
TCCTCAGAGCCTTGGAATCT+TGG + chr7_3:71143875-71143894 Msa1121110:CDS 50.0%
CCTCAGAGCCTTGGAATCTT+GGG + chr7_3:71143876-71143895 Msa1121110:CDS 50.0%
GGAATCTTGGGTGGAAAACC+AGG + chr7_3:71143888-71143907 Msa1121110:CDS 50.0%
TTTATGCCGACCCCACTTAG+TGG + chr7_3:71144561-71144580 Msa1121110:intron 50.0%
TTATGCCGACCCCACTTAGT+GGG + chr7_3:71144562-71144581 Msa1121110:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr7_3:71144570-71144589 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr7_3:71144576-71144595 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr7_3:71144573-71144592 Msa1121110:intron 50.0%
! GGGTTTTACTGCCGAGACAA+AGG + chr7_3:71144683-71144702 Msa1121110:CDS 50.0%
CAGGCACCAATGAAGATGAC+TGG + chr7_3:71144979-71144998 Msa1121110:CDS 50.0%
GCATCAACCAAACTTGGCAG+TGG - chr7_3:71145075-71145094 None:intergenic 50.0%
ACTTCGAGTCAAAGGGGGGA+TGG + chr7_3:71141592-71141611 Msa1121110:intron 55.0%
! AGACCCTGCCTTTGAAGAGG+CGG - chr7_3:71141993-71142012 None:intergenic 55.0%
AGCGTGTACTAGGGTCATGC+AGG + chr7_3:71142194-71142213 Msa1121110:CDS 55.0%
TCTAGCTGTTGGGTCATGGG+TGG + chr7_3:71142954-71142973 Msa1121110:CDS 55.0%
CTAGCTGTTGGGTCATGGGT+GGG + chr7_3:71142955-71142974 Msa1121110:CDS 55.0%
TAGCTGTTGGGTCATGGGTG+GGG + chr7_3:71142956-71142975 Msa1121110:CDS 55.0%
CCCAAGATTCCAAGGCTCTG+AGG - chr7_3:71143879-71143898 None:intergenic 55.0%
CAGAGCCTTGGAATCTTGGG+TGG + chr7_3:71143879-71143898 Msa1121110:CDS 55.0%
ATGGCCTAGTAGTGGTTGGG+AGG + chr7_3:71144296-71144315 Msa1121110:intron 55.0%
CACTCCTCCCAACCACTACT+AGG - chr7_3:71144303-71144322 None:intergenic 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr7_3:71144568-71144587 Msa1121110:intron 55.0%
TCAGGTGCCCGCCTCTTCAA+AGG + chr7_3:71141982-71142001 Msa1121110:CDS 60.0%
TGCCCGCCTCTTCAAAGGCA+GGG + chr7_3:71141987-71142006 Msa1121110:CDS 60.0%
! GACCCTGCCTTTGAAGAGGC+GGG - chr7_3:71141992-71142011 None:intergenic 60.0%
GGAGATGAAGACGGGGAACG+AGG + chr7_3:71143081-71143100 Msa1121110:CDS 60.0%
GATGAAGACGGGGAACGAGG+TGG + chr7_3:71143084-71143103 Msa1121110:CDS 60.0%
GTGCCCGCCTCTTCAAAGGC+AGG + chr7_3:71141986-71142005 Msa1121110:CDS 65.0%
GTGGGTGGGCAGCTGCTGTG+AGG + chr7_3:71142134-71142153 Msa1121110:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 71140601 71145373 71140601 ID=Msa1121110;Name=Msa1121110
chr7_3 mRNA 71140601 71145373 71140601 ID=Msa1121110-mRNA-1;Parent=Msa1121110;Name=Msa1121110-mRNA-1;_AED=0.08;_eAED=0.08;_QI=231|0.71|0.62|1|0.85|0.75|8|360|475
chr7_3 exon 71140601 71140770 71140601 ID=Msa1121110-mRNA-1:exon:18128;Parent=Msa1121110-mRNA-1
chr7_3 exon 71141841 71142370 71141841 ID=Msa1121110-mRNA-1:exon:18129;Parent=Msa1121110-mRNA-1
chr7_3 exon 71142455 71142540 71142455 ID=Msa1121110-mRNA-1:exon:18130;Parent=Msa1121110-mRNA-1
chr7_3 exon 71142662 71142712 71142662 ID=Msa1121110-mRNA-1:exon:18131;Parent=Msa1121110-mRNA-1
chr7_3 exon 71142853 71143257 71142853 ID=Msa1121110-mRNA-1:exon:18132;Parent=Msa1121110-mRNA-1
chr7_3 exon 71143861 71143980 71143861 ID=Msa1121110-mRNA-1:exon:18133;Parent=Msa1121110-mRNA-1
chr7_3 exon 71144623 71144704 71144623 ID=Msa1121110-mRNA-1:exon:18134;Parent=Msa1121110-mRNA-1
chr7_3 exon 71144799 71145373 71144799 ID=Msa1121110-mRNA-1:exon:18135;Parent=Msa1121110-mRNA-1
chr7_3 five_prime_UTR 71140601 71140770 71140601 ID=Msa1121110-mRNA-1:five_prime_utr;Parent=Msa1121110-mRNA-1
chr7_3 five_prime_UTR 71141841 71141901 71141841 ID=Msa1121110-mRNA-1:five_prime_utr;Parent=Msa1121110-mRNA-1
chr7_3 CDS 71141902 71142370 71141902 ID=Msa1121110-mRNA-1:cds;Parent=Msa1121110-mRNA-1
chr7_3 CDS 71142455 71142540 71142455 ID=Msa1121110-mRNA-1:cds;Parent=Msa1121110-mRNA-1
chr7_3 CDS 71142662 71142712 71142662 ID=Msa1121110-mRNA-1:cds;Parent=Msa1121110-mRNA-1
chr7_3 CDS 71142853 71143257 71142853 ID=Msa1121110-mRNA-1:cds;Parent=Msa1121110-mRNA-1
chr7_3 CDS 71143861 71143980 71143861 ID=Msa1121110-mRNA-1:cds;Parent=Msa1121110-mRNA-1
chr7_3 CDS 71144623 71144704 71144623 ID=Msa1121110-mRNA-1:cds;Parent=Msa1121110-mRNA-1
chr7_3 CDS 71144799 71145013 71144799 ID=Msa1121110-mRNA-1:cds;Parent=Msa1121110-mRNA-1
chr7_3 three_prime_UTR 71145014 71145373 71145014 ID=Msa1121110-mRNA-1:three_prime_utr;Parent=Msa1121110-mRNA-1
Gene Sequence

>Msa1121110

ATGGTATTGAAGGATTTATGTGATAGGATTGTTGCTGCAAAGTGTTCTTCTAAAAGCTCAACCGAGATTGTTGATAATACTCAGGTGCCCGCCTCTTCAAAGGCAGGGTCTAGTGATAGTAAGTTTCCCAAGGCTTCCTTATGGTCAACCTTCTTTACATCTGGTTTTTCAGTCGATGAAACATATAGTGAATCATCGTCTTCTGAAAAGAAAACAGTTCATTCTCGAAATAGTGGGTGGGCAGCTGCTGTGAGGAAAGTCGTTAGTGGCGGTTCAATGAGGAGATTTCAGGAGCGTGTACTAGGGTCATGCAGGACTGACGTTTCGAGCTCTGATGGCGATATATGGCTTCTAGGTGTCTGCCATAAAATTTCACAGCATGAATCAACTGGAGATGTAGATACTCGTAACGTGTTTGCAGCATTTGAGCAAGATTTTTTCTCTAAAATATTAATAACTTACCGCAAAGGCTTTGATGCAATTGAAGATTCAAAGTATACTAGTGATGTTAATTGGGGTTGTATGCTTCGAAGCAGTCAGATGCTTGTTGCTCAGGCATTACTTTTTCACAAATTAGGTAGATCGTGGAGAAAATCTGTTGACAAGCCAGTGGATAAAGAATATATTGACATCTTGCAACTATTTGGTGATTCCGAGGCGGCTGCTTTTTCTATCCACAACCTTCTTCAAGCTGGTAAAGGTTATGGTCTAGCTGTTGGGTCATGGGTGGGGCCATATGCTATGTGTCGCACATGGGAAGTTCTAGCTCGAAACCAGAGGGAGAAGAATGAGCAAGGAGAACAGCCACTTCCAATGGCTATTTACGTTGTTTCTGGAGATGAAGACGGGGAACGAGGTGGAGCACCAGTTGTCTGCATTGAAGATGCCTGCAAACGCTGTTTAGAGTTTTCAAGGGGCCTAGTTCCTTGGACACCTCTACTTTTATTGGTTCCTTTGGTTCTTGGACTTGATAAAGTCAATCTAAGGTGTGTGGCCTTTCAAGGTTCTATGTCAACTTTTAAATTTCCTCAGAGCCTTGGAATCTTGGGTGGAAAACCAGGTGCTTCGACATACATTATTGGTGTTCAGAATGATAAGGCATTCTACCTTGATCCACATGAAGTTAAGCCGACTCCTAACAGCATTAGCAGGCATATGCCCCTAGATTCAATTGACCCATCTTTGGCTATTGGGTTTTACTGCCGAGACAAAGATGATTTTGATGATTTTTGTTCCCGAGCAACTAAGCTTGCAGAAGAATCAAACGGTGCACCATTATTCACTGTAGCTCAGTCTAGGAGTCTCCCAATGCAAGTCACAAGTAATTCTGTGTCAGGTGACGACACTAGATTTGAAGAGGATGATTCGCTTAGTATGAACCTTGTTAATGATGCAGGCACCAATGAAGATGACTGGCAATTCCTATAA

Protein sequence

>Msa1121110

MVLKDLCDRIVAAKCSSKSSTEIVDNTQVPASSKAGSSDSKFPKASLWSTFFTSGFSVDETYSESSSSEKKTVHSRNSGWAAAVRKVVSGGSMRRFQERVLGSCRTDVSSSDGDIWLLGVCHKISQHESTGDVDTRNVFAAFEQDFFSKILITYRKGFDAIEDSKYTSDVNWGCMLRSSQMLVAQALLFHKLGRSWRKSVDKPVDKEYIDILQLFGDSEAAAFSIHNLLQAGKGYGLAVGSWVGPYAMCRTWEVLARNQREKNEQGEQPLPMAIYVVSGDEDGERGGAPVVCIEDACKRCLEFSRGLVPWTPLLLLVPLVLGLDKVNLRCVAFQGSMSTFKFPQSLGILGGKPGASTYIIGVQNDKAFYLDPHEVKPTPNSISRHMPLDSIDPSLAIGFYCRDKDDFDDFCSRATKLAEESNGAPLFTVAQSRSLPMQVTSNSVSGDDTRFEEDDSLSMNLVNDAGTNEDDWQFL*