AlfalfaGEDB | Msa1097560

M. sativa cultivar zhongmu-4 / Msa1097560

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03634.16

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1097560	XP_013447731.1	93.684	380	16	4	1	378	1	374	0.0	545

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1097560	sp\|Q9FYG7\|TCP1_ARATH	37.313	268	131	11	73	312	47	305	3.93e-33	130

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1097560	A0A072TXB5	93.684	380	16	4	1	378	1	374	0.0	545

TFs/TRs:

Gene ID	Type	Classification
Msa1097560	TF	TCP

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002930	Msa1097560	0.811674	6.222349e-51	-8.615850e-47
Msa0036430	Msa1097560	0.817566	3.085450e-52	-8.615850e-47
Msa0106790	Msa1097560	0.819842	9.391063e-53	-8.615850e-47
Msa0110970	Msa1097560	0.816620	5.034671e-52	-8.615850e-47
Msa0118400	Msa1097560	0.831999	1.213740e-55	-8.615850e-47
Msa0620240	Msa1097560	0.820691	6.000338e-53	-8.615850e-47
Msa0130570	Msa1097560	0.828307	9.668184e-55	-8.615850e-47
Msa0147560	Msa1097560	0.804421	2.177821e-49	-8.615850e-47
Msa0153420	Msa1097560	0.826592	2.492185e-54	-8.615850e-47
Msa0161680	Msa1097560	0.802113	6.543520e-49	-8.615850e-47
Msa0436500	Msa1097560	0.802093	6.606581e-49	-8.615850e-47
Msa1010110	Msa1097560	0.846237	2.464289e-59	-8.615850e-47
Msa1020720	Msa1097560	0.808179	3.516964e-50	-8.615850e-47
Msa1097560	Msa1133000	0.819314	1.239791e-52	-8.615850e-47
Msa1097560	Msa1139880	0.872693	2.614532e-67	-8.615850e-47
Msa1097560	Msa1228980	0.814661	1.374978e-51	-8.615850e-47
Msa1097560	Msa1229560	0.802197	6.288848e-49	-8.615850e-47
Msa1097560	Msa1438740	0.808776	2.623361e-50	-8.615850e-47
Msa0306300	Msa1097560	0.802374	5.783373e-49	-8.615850e-47
Msa0322830	Msa1097560	0.804729	1.878803e-49	-8.615850e-47
Msa0503580	Msa1097560	0.804887	1.740930e-49	-8.615850e-47
Msa0571140	Msa1097560	0.803038	4.217758e-49	-8.615850e-47
Msa0880140	Msa1097560	0.800337	1.511287e-48	-8.615850e-47
Msa0880440	Msa1097560	0.812989	3.212457e-51	-8.615850e-47
Msa0885060	Msa1097560	0.800552	1.365943e-48	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1097560	MtrunA17_Chr7g0220931	93.684	380	16	4	1	378	1	374	0.0	545
Msa1097560	MtrunA17_Chr6g0456881	46.328	354	109	16	73	364	67	401	3.56e-67	218
Msa1097560	MtrunA17_Chr1g0205131	35.602	382	163	14	43	356	27	393	5.07e-44	157
Msa1097560	MtrunA17_Chr4g0062691	33.459	266	141	11	5	245	14	268	7.02e-27	110
Msa1097560	MtrunA17_Chr8g0376571	52.703	74	35	0	116	189	57	130	1.17e-18	87.4
Msa1097560	MtrunA17_Chr2g0316391	53.846	65	30	0	115	179	15	79	4.61e-17	80.9
Msa1097560	MtrunA17_Chr2g0325171	51.562	64	31	0	115	178	19	82	1.24e-16	80.1
Msa1097560	MtrunA17_Chr8g0360441	52.308	65	31	0	115	179	49	113	1.48e-16	80.9
Msa1097560	MtrunA17_Chr4g0040921	52.308	65	31	0	115	179	17	81	1.59e-16	79.7
Msa1097560	MtrunA17_Chr6g0454781	47.561	82	41	1	119	200	48	127	3.61e-16	79.0
Msa1097560	MtrunA17_Chr7g0219461	51.667	60	29	0	119	178	56	115	1.55e-14	74.3
Msa1097560	MtrunA17_Chr4g0061561	48.333	60	31	0	119	178	56	115	4.15e-13	69.3
Msa1097560	MtrunA17_Chr3g0086961	48.333	60	31	0	119	178	56	115	2.24e-12	67.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1097560	AT1G67260.1	37.313	268	131	11	73	312	47	305	4.00e-34	130
Msa1097560	AT1G67260.2	37.687	268	130	11	73	312	47	305	4.09e-34	129
Msa1097560	AT1G67260.3	37.687	268	130	11	73	312	47	305	4.09e-34	129
Msa1097560	AT1G68800.1	54.867	113	42	4	120	229	112	218	2.24e-25	105
Msa1097560	AT1G68800.2	54.867	113	42	4	120	229	112	218	2.39e-25	105
Msa1097560	AT3G18550.2	38.562	153	70	3	113	241	141	293	3.15e-21	95.1
Msa1097560	AT3G18550.3	36.306	157	72	3	113	241	141	297	4.33e-20	91.7
Msa1097560	AT3G18550.1	36.306	157	72	3	113	241	141	297	6.46e-20	91.3
Msa1097560	AT3G18550.4	36.306	157	72	3	113	241	141	297	6.46e-20	91.3
Msa1097560	AT4G18390.1	36.986	146	88	3	103	248	27	168	9.73e-18	84.3
Msa1097560	AT4G18390.2	36.986	146	88	3	103	248	27	168	9.73e-18	84.3
Msa1097560	AT1G30210.2	53.968	63	29	0	116	178	46	108	1.71e-16	80.1
Msa1097560	AT1G30210.1	53.968	63	29	0	116	178	46	108	1.71e-16	80.1
Msa1097560	AT1G53230.1	51.515	66	32	0	115	180	44	109	2.17e-16	80.5
Msa1097560	AT1G53230.2	51.515	66	32	0	115	180	44	109	2.17e-16	80.5
Msa1097560	AT3G15030.2	52.308	65	31	0	115	179	40	104	2.89e-16	80.1
Msa1097560	AT3G15030.4	52.308	65	31	0	115	179	40	104	2.89e-16	80.1
Msa1097560	AT3G15030.3	52.308	65	31	0	115	179	40	104	2.89e-16	80.1
Msa1097560	AT3G15030.1	52.308	65	31	0	115	179	40	104	2.89e-16	80.1
Msa1097560	AT2G31070.1	51.562	64	31	0	115	178	24	87	5.71e-16	79.0
Msa1097560	AT3G02150.1	53.333	60	28	0	119	178	73	132	1.07e-14	74.3
Msa1097560	AT3G02150.2	53.333	60	28	0	119	178	73	132	1.68e-14	74.3
Msa1097560	AT5G60970.1	46.667	60	32	0	119	178	62	121	9.04e-13	69.3
Msa1097560	AT5G08070.2	45.000	60	33	0	119	178	32	91	2.35e-11	63.9
Msa1097560	AT5G08070.1	45.000	60	33	0	119	178	32	91	2.35e-11	63.9

Find 79 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CCTTCAACTTATTGCTCTTT+AGG	0.129653	7_3:-22893228	Msa1097560:CDS
CACGGATATTAAATATTTAA+AGG	0.183426	7_3:+22893389	None:intergenic
ATCCTGATACACTAACAAAT+TGG	0.193845	7_3:-22893002	Msa1097560:CDS
GCCCAATTTGTTAGTGTATC+AGG	0.208804	7_3:+22893000	None:intergenic
CTCCAATGTTATCACCAAAT+TGG	0.217754	7_3:-22892273	Msa1097560:CDS
GTTAGTGTATCAGGATTAAT+TGG	0.223236	7_3:+22893009	None:intergenic
GGTATATAGCTATGTTCTTA+TGG	0.234961	7_3:+22893329	None:intergenic
CTTCGAAGACGAAGGATTCT+AGG	0.286350	7_3:-22892567	Msa1097560:CDS
TTCTTAGCTGGTTTCTTGAC+AGG	0.328037	7_3:+22892895	None:intergenic
TGTGAAGAAGAAGATGAATT+AGG	0.330614	7_3:+22893186	None:intergenic
TTCGATCTTCAAGACATGTT+AGG	0.334610	7_3:-22892790	Msa1097560:CDS
CTATGCCTGTCTTTCTTAGC+TGG	0.335007	7_3:+22892883	None:intergenic
ATGATATGAAAAGTGAGATT+TGG	0.335134	7_3:+22893515	None:intergenic
TATTTAATATCCGTGTAAAA+AGG	0.339349	7_3:-22893381	Msa1097560:five_prime_UTR
TTATTATTAGCATCCCAATT+TGG	0.341400	7_3:+22892259	None:intergenic
TTTGAAGTTTCATCTTCATT+AGG	0.348443	7_3:+22892430	None:intergenic
TCATGAGAATCACTATTATT+AGG	0.353829	7_3:+22892298	None:intergenic
GTATATAGCTATGTTCTTAT+GGG	0.365915	7_3:+22893330	None:intergenic
AATATCAGCTAATATCGATT+TGG	0.375751	7_3:+22891991	None:intergenic
TCAGGGGTAAGAAAAGTAAA+AGG	0.386359	7_3:+22893153	None:intergenic
GAGCCATTCAAGTGTGTTGC+TGG	0.409129	7_3:+22892756	None:intergenic
TTCAAATCTTTGGAAAATCA+TGG	0.409744	7_3:-22892032	Msa1097560:CDS
AAAGTTGTTGATGTTGTTGT+TGG	0.410045	7_3:+22893089	None:intergenic
TCCAATGTTATCACCAAATT+GGG	0.411724	7_3:-22892272	Msa1097560:CDS
GATTGATTACTTAACTCAAA+TGG	0.413424	7_3:+22893262	None:intergenic
CTAAAGATAGAAAGATGAAA+AGG	0.414926	7_3:-22892603	Msa1097560:CDS
AATGAACTACTTACTAGTTA+AGG	0.419311	7_3:+22893413	None:intergenic
TCTTGATATTGCAGAAAAGT+TGG	0.424180	7_3:+22892210	None:intergenic
TCTTCTTCGTCTTCCGATGA+AGG	0.430527	7_3:-22892643	Msa1097560:CDS
TCCTGATACACTAACAAATT+GGG	0.434497	7_3:-22893001	Msa1097560:CDS
TCGATCTTCAAGACATGTTA+GGG	0.442491	7_3:-22892789	Msa1097560:CDS
GGTGTTGTTAGTGTTGTTGT+TGG	0.445348	7_3:+22893110	None:intergenic
AGCAAGAACAACATAGCTTC+TGG	0.450038	7_3:-22892694	Msa1097560:CDS
CATTAGGCATCAATTGATGA+AGG	0.463155	7_3:+22892446	None:intergenic
TTGTTGTGAAACAAGAAACT+AGG	0.471445	7_3:-22893293	Msa1097560:five_prime_UTR
TGAAAGAAATTGATGATGAT+AGG	0.471978	7_3:+22893470	None:intergenic
TGATGAGTTGTTTGTGTGTA+GGG	0.490224	7_3:+22893039	None:intergenic
AATAACAATGATGCTGTCAC+TGG	0.496363	7_3:-22892238	Msa1097560:CDS
CCTAAAGAGCAATAAGTTGA+AGG	0.500471	7_3:+22893228	None:intergenic
TCAAGAACGAATCTATCATC+AGG	0.510472	7_3:-22892193	Msa1097560:intron
ATCTTCTTCATCTCCTTCAT+CGG	0.512276	7_3:+22892630	None:intergenic
AAAGATGAAAAGGGCACAGA+AGG	0.517893	7_3:-22892593	Msa1097560:CDS
AGCAAGATTCACACATCTCA+AGG	0.519514	7_3:-22892862	Msa1097560:CDS
TGTTGTGAAACAAGAAACTA+GGG	0.521317	7_3:-22893292	Msa1097560:five_prime_UTR
TAAAGATAGAAAGATGAAAA+GGG	0.526209	7_3:-22892602	Msa1097560:CDS
AAGGCTTATTCTTCTAACAA+TGG	0.526389	7_3:-22893550	Msa1097560:five_prime_UTR
TCAAATCTTTGGAAAATCAT+GGG	0.526493	7_3:-22892031	Msa1097560:CDS
GAACTTCCTCGCGATCTCGA+TGG	0.528472	7_3:+22892813	None:intergenic
TAGGGAACAGAAATAGCTGC+TGG	0.529350	7_3:+22893057	None:intergenic
AAGCCAGCAACACACTTGAA+TGG	0.532128	7_3:-22892759	Msa1097560:CDS
AGAAACCAGCTAAGAAAGAC+AGG	0.535037	7_3:-22892888	Msa1097560:CDS
AACCTAGAAGAGAATAAAAG+TGG	0.536483	7_3:+22893445	None:intergenic
TTCGAAGACGAAGGATTCTA+GGG	0.537014	7_3:-22892566	Msa1097560:CDS
AGAAAGCAAGAGCAAGAACA+AGG	0.538860	7_3:-22892543	Msa1097560:CDS
CATCACACAGATAAATATGA+AGG	0.543139	7_3:-22893569	Msa1097560:five_prime_UTR
TGATATCTTTAACTTCATTG+AGG	0.548363	7_3:-22892392	Msa1097560:CDS
GGGGTAAGAAAAGTAAAAGG+AGG	0.548490	7_3:+22893156	None:intergenic
CTTCATATTTATCTGTGTGA+TGG	0.554948	7_3:+22893570	None:intergenic
TTAGGATTATAACAAGGGTA+AGG	0.556043	7_3:+22893204	None:intergenic
TCCCAATTTGGTGATAACAT+TGG	0.563066	7_3:+22892271	None:intergenic
ATGAATTAGGATTATAACAA+GGG	0.570279	7_3:+22893199	None:intergenic
GGGTAAGAAAAGTAAAAGGA+GGG	0.575339	7_3:+22893157	None:intergenic
ATGATGAGTTGTTTGTGTGT+AGG	0.581066	7_3:+22893038	None:intergenic
AATTGATGATGATAGGTGAA+GGG	0.587918	7_3:+22893477	None:intergenic
CAGCTAATATCGATTTGGAC+TGG	0.588709	7_3:+22891996	None:intergenic
GATGAATTAGGATTATAACA+AGG	0.592158	7_3:+22893198	None:intergenic
CTCAAGGTTTGAGAGACAGA+AGG	0.592962	7_3:-22892846	Msa1097560:CDS
AAATTGATGATGATAGGTGA+AGG	0.598522	7_3:+22893476	None:intergenic
TGTGTGATGGACAAGGCTCA+TGG	0.600880	7_3:+22893583	None:intergenic
GTGTGATGGACAAGGCTCAT+GGG	0.602345	7_3:+22893584	None:intergenic
ATTTATCTGTGTGATGGACA+AGG	0.602367	7_3:+22893576	None:intergenic
GACTTTCCATCGAGATCGCG+AGG	0.608900	7_3:-22892819	Msa1097560:CDS
GATGGACAAGGCTCATGGGT+TGG	0.611574	7_3:+22893588	None:intergenic
GAAAGCAAGAGCAAGAACAA+GGG	0.614345	7_3:-22892542	Msa1097560:CDS
TCAAGGTTTGAGAGACAGAA+GGG	0.615028	7_3:-22892845	Msa1097560:CDS
AATCTTTGGAAAATCATGGG+AGG	0.624471	7_3:-22892028	Msa1097560:CDS
GAAGGAATCTTCGAAGACGA+AGG	0.639563	7_3:-22892575	Msa1097560:CDS
GCTTCTGGCGATGACGACGA+TGG	0.659720	7_3:-22892679	Msa1097560:CDS
ATGTTGAAACAAGATCTAAG+TGG	0.698091	7_3:-22892958	Msa1097560:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	CATAAAATTAATTAACAAAA+AGG	-	chr7_3:22893460-22893479	Msa1097560:five_prime_UTR	10.0%
!!	CATAAAATTAATTAACAAAA+AGG	-	chr7_3:22893460-22893479	Msa1097560:five_prime_UTR	10.0%
!!!	TTTTTAGGTTTAAACTTTTT+AGG	-	chr7_3:22893531-22893550	Msa1097560:five_prime_UTR	15.0%
!!!	TTTTAGGTTTAAACTTTTTA+GGG	-	chr7_3:22893532-22893551	Msa1097560:five_prime_UTR	15.0%
!!!	TTTTTAGGTTTAAACTTTTT+AGG	-	chr7_3:22893531-22893550	Msa1097560:five_prime_UTR	15.0%
!!!	TTTTAGGTTTAAACTTTTTA+GGG	-	chr7_3:22893532-22893551	Msa1097560:five_prime_UTR	15.0%
!!	CACGGATATTAAATATTTAA+AGG	+	chr7_3:22892202-22892221	None:intergenic	20.0%
!!	TATTTAATATCCGTGTAAAA+AGG	-	chr7_3:22892207-22892226	Msa1097560:CDS	20.0%
!!	ATGAATTAGGATTATAACAA+GGG	+	chr7_3:22892392-22892411	None:intergenic	20.0%
!!	TAAAGATAGAAAGATGAAAA+GGG	-	chr7_3:22892986-22893005	Msa1097560:CDS	20.0%
!!!	TTGTGATACTTACAATTTTT+AGG	-	chr7_3:22893516-22893535	Msa1097560:five_prime_UTR	20.0%
!!	CACGGATATTAAATATTTAA+AGG	+	chr7_3:22892202-22892221	None:intergenic	20.0%
!!	TATTTAATATCCGTGTAAAA+AGG	-	chr7_3:22892207-22892226	Msa1097560:CDS	20.0%
!!	ATGAATTAGGATTATAACAA+GGG	+	chr7_3:22892392-22892411	None:intergenic	20.0%
!!	TAAAGATAGAAAGATGAAAA+GGG	-	chr7_3:22892986-22893005	Msa1097560:CDS	20.0%
!!!	TTGTGATACTTACAATTTTT+AGG	-	chr7_3:22893516-22893535	Msa1097560:five_prime_UTR	20.0%
!	ATGATATGAAAAGTGAGATT+TGG	+	chr7_3:22892076-22892095	None:intergenic	25.0%
!!!	TGAAAGAAATTGATGATGAT+AGG	+	chr7_3:22892121-22892140	None:intergenic	25.0%
!	AATGAACTACTTACTAGTTA+AGG	+	chr7_3:22892178-22892197	None:intergenic	25.0%
!	GTATATAGCTATGTTCTTAT+GGG	+	chr7_3:22892261-22892280	None:intergenic	25.0%
!	GATTGATTACTTAACTCAAA+TGG	+	chr7_3:22892329-22892348	None:intergenic	25.0%
!	GATGAATTAGGATTATAACA+AGG	+	chr7_3:22892393-22892412	None:intergenic	25.0%
!	CTAAAGATAGAAAGATGAAA+AGG	-	chr7_3:22892985-22893004	Msa1097560:CDS	25.0%
!!!	TGTTGATTTTGATCAATTTC+AGG	+	chr7_3:22893119-22893138	None:intergenic	25.0%
!!	TTTGAAGTTTCATCTTCATT+AGG	+	chr7_3:22893161-22893180	None:intergenic	25.0%
!!	TGATATCTTTAACTTCATTG+AGG	-	chr7_3:22893196-22893215	Msa1097560:CDS	25.0%
!	TCATGAGAATCACTATTATT+AGG	+	chr7_3:22893293-22893312	None:intergenic	25.0%
!	TTATTATTAGCATCCCAATT+TGG	+	chr7_3:22893332-22893351	None:intergenic	25.0%
!!	TTCAAATCTTTGGAAAATCA+TGG	-	chr7_3:22893556-22893575	Msa1097560:five_prime_UTR	25.0%
!!	TCAAATCTTTGGAAAATCAT+GGG	-	chr7_3:22893557-22893576	Msa1097560:five_prime_UTR	25.0%
!	ATGATATGAAAAGTGAGATT+TGG	+	chr7_3:22892076-22892095	None:intergenic	25.0%
!!!	TGAAAGAAATTGATGATGAT+AGG	+	chr7_3:22892121-22892140	None:intergenic	25.0%
!	AATGAACTACTTACTAGTTA+AGG	+	chr7_3:22892178-22892197	None:intergenic	25.0%
!	GTATATAGCTATGTTCTTAT+GGG	+	chr7_3:22892261-22892280	None:intergenic	25.0%
!	GATTGATTACTTAACTCAAA+TGG	+	chr7_3:22892329-22892348	None:intergenic	25.0%
!	GATGAATTAGGATTATAACA+AGG	+	chr7_3:22892393-22892412	None:intergenic	25.0%
!	CTAAAGATAGAAAGATGAAA+AGG	-	chr7_3:22892985-22893004	Msa1097560:CDS	25.0%
!!!	TGTTGATTTTGATCAATTTC+AGG	+	chr7_3:22893119-22893138	None:intergenic	25.0%
!!	TTTGAAGTTTCATCTTCATT+AGG	+	chr7_3:22893161-22893180	None:intergenic	25.0%
!!	TGATATCTTTAACTTCATTG+AGG	-	chr7_3:22893196-22893215	Msa1097560:CDS	25.0%
!	TCATGAGAATCACTATTATT+AGG	+	chr7_3:22893293-22893312	None:intergenic	25.0%
!	TTATTATTAGCATCCCAATT+TGG	+	chr7_3:22893332-22893351	None:intergenic	25.0%
!!	TTCAAATCTTTGGAAAATCA+TGG	-	chr7_3:22893556-22893575	Msa1097560:five_prime_UTR	25.0%
!!	TCAAATCTTTGGAAAATCAT+GGG	-	chr7_3:22893557-22893576	Msa1097560:five_prime_UTR	25.0%
	CTTCATATTTATCTGTGTGA+TGG	+	chr7_3:22892021-22892040	None:intergenic	30.0%
	CATCACACAGATAAATATGA+AGG	-	chr7_3:22892019-22892038	Msa1097560:CDS	30.0%
	AAGGCTTATTCTTCTAACAA+TGG	-	chr7_3:22892038-22892057	Msa1097560:CDS	30.0%
!!	AATTGATGATGATAGGTGAA+GGG	+	chr7_3:22892114-22892133	None:intergenic	30.0%
!!	AAATTGATGATGATAGGTGA+AGG	+	chr7_3:22892115-22892134	None:intergenic	30.0%
!!	AACCACTTTTATTCTCTTCT+AGG	-	chr7_3:22892141-22892160	Msa1097560:intron	30.0%
	AACCTAGAAGAGAATAAAAG+TGG	+	chr7_3:22892146-22892165	None:intergenic	30.0%
!	CCTAAAAACACCTTTTTACA+CGG	+	chr7_3:22892220-22892239	None:intergenic	30.0%
	GGTATATAGCTATGTTCTTA+TGG	+	chr7_3:22892262-22892281	None:intergenic	30.0%
	CACAACAAAAAAAGAACAAG+AGG	+	chr7_3:22892283-22892302	None:intergenic	30.0%
	TTGTTGTGAAACAAGAAACT+AGG	-	chr7_3:22892295-22892314	Msa1097560:CDS	30.0%
	TGTTGTGAAACAAGAAACTA+GGG	-	chr7_3:22892296-22892315	Msa1097560:CDS	30.0%
	TTAGGATTATAACAAGGGTA+AGG	+	chr7_3:22892387-22892406	None:intergenic	30.0%
	TGTGAAGAAGAAGATGAATT+AGG	+	chr7_3:22892405-22892424	None:intergenic	30.0%
!!!	TAGAAGAAGCATTTTGATCA+GGG	+	chr7_3:22892455-22892474	None:intergenic	30.0%
!!!	TTAGAAGAAGCATTTTGATC+AGG	+	chr7_3:22892456-22892475	None:intergenic	30.0%
	AAAGTTGTTGATGTTGTTGT+TGG	+	chr7_3:22892502-22892521	None:intergenic	30.0%
	GTTAGTGTATCAGGATTAAT+TGG	+	chr7_3:22892582-22892601	None:intergenic	30.0%
	ATCCTGATACACTAACAAAT+TGG	-	chr7_3:22892586-22892605	Msa1097560:CDS	30.0%
	TCCTGATACACTAACAAATT+GGG	-	chr7_3:22892587-22892606	Msa1097560:CDS	30.0%
	ATGTTGAAACAAGATCTAAG+TGG	-	chr7_3:22892630-22892649	Msa1097560:CDS	30.0%
!	GCATCAAATTAGTGTTTTGT+TGG	+	chr7_3:22893271-22893290	None:intergenic	30.0%
	TCCAATGTTATCACCAAATT+GGG	-	chr7_3:22893316-22893335	Msa1097560:five_prime_UTR	30.0%
	TCTTGATATTGCAGAAAAGT+TGG	+	chr7_3:22893381-22893400	None:intergenic	30.0%
!!!	TTTTTAGGGCTTCAAATCTT+TGG	-	chr7_3:22893546-22893565	Msa1097560:five_prime_UTR	30.0%
	CTTCATATTTATCTGTGTGA+TGG	+	chr7_3:22892021-22892040	None:intergenic	30.0%
	CATCACACAGATAAATATGA+AGG	-	chr7_3:22892019-22892038	Msa1097560:CDS	30.0%
	AAGGCTTATTCTTCTAACAA+TGG	-	chr7_3:22892038-22892057	Msa1097560:CDS	30.0%
!!	AATTGATGATGATAGGTGAA+GGG	+	chr7_3:22892114-22892133	None:intergenic	30.0%
!!	AAATTGATGATGATAGGTGA+AGG	+	chr7_3:22892115-22892134	None:intergenic	30.0%
!!	AACCACTTTTATTCTCTTCT+AGG	-	chr7_3:22892141-22892160	Msa1097560:intron	30.0%
	AACCTAGAAGAGAATAAAAG+TGG	+	chr7_3:22892146-22892165	None:intergenic	30.0%
!	CCTAAAAACACCTTTTTACA+CGG	+	chr7_3:22892220-22892239	None:intergenic	30.0%
	GGTATATAGCTATGTTCTTA+TGG	+	chr7_3:22892262-22892281	None:intergenic	30.0%
	CACAACAAAAAAAGAACAAG+AGG	+	chr7_3:22892283-22892302	None:intergenic	30.0%
	TTGTTGTGAAACAAGAAACT+AGG	-	chr7_3:22892295-22892314	Msa1097560:CDS	30.0%
	TGTTGTGAAACAAGAAACTA+GGG	-	chr7_3:22892296-22892315	Msa1097560:CDS	30.0%
	TTAGGATTATAACAAGGGTA+AGG	+	chr7_3:22892387-22892406	None:intergenic	30.0%
	TGTGAAGAAGAAGATGAATT+AGG	+	chr7_3:22892405-22892424	None:intergenic	30.0%
!!!	TAGAAGAAGCATTTTGATCA+GGG	+	chr7_3:22892455-22892474	None:intergenic	30.0%
!!!	TTAGAAGAAGCATTTTGATC+AGG	+	chr7_3:22892456-22892475	None:intergenic	30.0%
	AAAGTTGTTGATGTTGTTGT+TGG	+	chr7_3:22892502-22892521	None:intergenic	30.0%
	GTTAGTGTATCAGGATTAAT+TGG	+	chr7_3:22892582-22892601	None:intergenic	30.0%
	ATCCTGATACACTAACAAAT+TGG	-	chr7_3:22892586-22892605	Msa1097560:CDS	30.0%
	TCCTGATACACTAACAAATT+GGG	-	chr7_3:22892587-22892606	Msa1097560:CDS	30.0%
	ATGTTGAAACAAGATCTAAG+TGG	-	chr7_3:22892630-22892649	Msa1097560:CDS	30.0%
!	GCATCAAATTAGTGTTTTGT+TGG	+	chr7_3:22893271-22893290	None:intergenic	30.0%
	TCCAATGTTATCACCAAATT+GGG	-	chr7_3:22893316-22893335	Msa1097560:five_prime_UTR	30.0%
	TCTTGATATTGCAGAAAAGT+TGG	+	chr7_3:22893381-22893400	None:intergenic	30.0%
!!!	TTTTTAGGGCTTCAAATCTT+TGG	-	chr7_3:22893546-22893565	Msa1097560:five_prime_UTR	30.0%
!!	ATTTATCTGTGTGATGGACA+AGG	+	chr7_3:22892015-22892034	None:intergenic	35.0%
!	TAGGTGAAGGGTTTTCATTT+TGG	+	chr7_3:22892102-22892121	None:intergenic	35.0%
!!!	CCGTGTAAAAAGGTGTTTTT+AGG	-	chr7_3:22892217-22892236	Msa1097560:CDS	35.0%
!	CCTAAAGAGCAATAAGTTGA+AGG	+	chr7_3:22892363-22892382	None:intergenic	35.0%
	CCTTCAACTTATTGCTCTTT+AGG	-	chr7_3:22892360-22892379	Msa1097560:CDS	35.0%
	GGGTAAGAAAAGTAAAAGGA+GGG	+	chr7_3:22892434-22892453	None:intergenic	35.0%
	TCAGGGGTAAGAAAAGTAAA+AGG	+	chr7_3:22892438-22892457	None:intergenic	35.0%
!!!	AGAAGAAGCATTTTGATCAG+GGG	+	chr7_3:22892454-22892473	None:intergenic	35.0%
	TGATGAGTTGTTTGTGTGTA+GGG	+	chr7_3:22892552-22892571	None:intergenic	35.0%
	ATGATGAGTTGTTTGTGTGT+AGG	+	chr7_3:22892553-22892572	None:intergenic	35.0%
	TTCGATCTTCAAGACATGTT+AGG	-	chr7_3:22892798-22892817	Msa1097560:CDS	35.0%
	TCGATCTTCAAGACATGTTA+GGG	-	chr7_3:22892799-22892818	Msa1097560:CDS	35.0%
	ATCTTCTTCATCTCCTTCAT+CGG	+	chr7_3:22892961-22892980	None:intergenic	35.0%
	CATTAGGCATCAATTGATGA+AGG	+	chr7_3:22893145-22893164	None:intergenic	35.0%
	CTCCAATGTTATCACCAAAT+TGG	-	chr7_3:22893315-22893334	Msa1097560:five_prime_UTR	35.0%
!	TCCCAATTTGGTGATAACAT+TGG	+	chr7_3:22893320-22893339	None:intergenic	35.0%
	AATAACAATGATGCTGTCAC+TGG	-	chr7_3:22893350-22893369	Msa1097560:five_prime_UTR	35.0%
	TCAAGAACGAATCTATCATC+AGG	-	chr7_3:22893395-22893414	Msa1097560:five_prime_UTR	35.0%
!	AATCTTTGGAAAATCATGGG+AGG	-	chr7_3:22893560-22893579	Msa1097560:five_prime_UTR	35.0%
!!	ATTTATCTGTGTGATGGACA+AGG	+	chr7_3:22892015-22892034	None:intergenic	35.0%
!	TAGGTGAAGGGTTTTCATTT+TGG	+	chr7_3:22892102-22892121	None:intergenic	35.0%
!!!	CCGTGTAAAAAGGTGTTTTT+AGG	-	chr7_3:22892217-22892236	Msa1097560:CDS	35.0%
!	CCTAAAGAGCAATAAGTTGA+AGG	+	chr7_3:22892363-22892382	None:intergenic	35.0%
	CCTTCAACTTATTGCTCTTT+AGG	-	chr7_3:22892360-22892379	Msa1097560:CDS	35.0%
	GGGTAAGAAAAGTAAAAGGA+GGG	+	chr7_3:22892434-22892453	None:intergenic	35.0%
	TCAGGGGTAAGAAAAGTAAA+AGG	+	chr7_3:22892438-22892457	None:intergenic	35.0%
!!!	AGAAGAAGCATTTTGATCAG+GGG	+	chr7_3:22892454-22892473	None:intergenic	35.0%
	TGATGAGTTGTTTGTGTGTA+GGG	+	chr7_3:22892552-22892571	None:intergenic	35.0%
	ATGATGAGTTGTTTGTGTGT+AGG	+	chr7_3:22892553-22892572	None:intergenic	35.0%
	TTCGATCTTCAAGACATGTT+AGG	-	chr7_3:22892798-22892817	Msa1097560:CDS	35.0%
	TCGATCTTCAAGACATGTTA+GGG	-	chr7_3:22892799-22892818	Msa1097560:CDS	35.0%
	ATCTTCTTCATCTCCTTCAT+CGG	+	chr7_3:22892961-22892980	None:intergenic	35.0%
	CATTAGGCATCAATTGATGA+AGG	+	chr7_3:22893145-22893164	None:intergenic	35.0%
	CTCCAATGTTATCACCAAAT+TGG	-	chr7_3:22893315-22893334	Msa1097560:five_prime_UTR	35.0%
!	TCCCAATTTGGTGATAACAT+TGG	+	chr7_3:22893320-22893339	None:intergenic	35.0%
	AATAACAATGATGCTGTCAC+TGG	-	chr7_3:22893350-22893369	Msa1097560:five_prime_UTR	35.0%
	TCAAGAACGAATCTATCATC+AGG	-	chr7_3:22893395-22893414	Msa1097560:five_prime_UTR	35.0%
!	AATCTTTGGAAAATCATGGG+AGG	-	chr7_3:22893560-22893579	Msa1097560:five_prime_UTR	35.0%
	GGGGTAAGAAAAGTAAAAGG+AGG	+	chr7_3:22892435-22892454	None:intergenic	40.0%
!!	GGTGTTGTTAGTGTTGTTGT+TGG	+	chr7_3:22892481-22892500	None:intergenic	40.0%
!!	GCCCAATTTGTTAGTGTATC+AGG	+	chr7_3:22892591-22892610	None:intergenic	40.0%
!	TTCTTAGCTGGTTTCTTGAC+AGG	+	chr7_3:22892696-22892715	None:intergenic	40.0%
	AGAAACCAGCTAAGAAAGAC+AGG	-	chr7_3:22892700-22892719	Msa1097560:CDS	40.0%
	AGCAAGATTCACACATCTCA+AGG	-	chr7_3:22892726-22892745	Msa1097560:CDS	40.0%
	TCAAGGTTTGAGAGACAGAA+GGG	-	chr7_3:22892743-22892762	Msa1097560:CDS	40.0%
	AGCAAGAACAACATAGCTTC+TGG	-	chr7_3:22892894-22892913	Msa1097560:CDS	40.0%
!	AAAGATGAAAAGGGCACAGA+AGG	-	chr7_3:22892995-22893014	Msa1097560:CDS	40.0%
	TTCGAAGACGAAGGATTCTA+GGG	-	chr7_3:22893022-22893041	Msa1097560:CDS	40.0%
	AGAAAGCAAGAGCAAGAACA+AGG	-	chr7_3:22893045-22893064	Msa1097560:CDS	40.0%
	GAAAGCAAGAGCAAGAACAA+GGG	-	chr7_3:22893046-22893065	Msa1097560:CDS	40.0%
	GGGGTAAGAAAAGTAAAAGG+AGG	+	chr7_3:22892435-22892454	None:intergenic	40.0%
!!	GGTGTTGTTAGTGTTGTTGT+TGG	+	chr7_3:22892481-22892500	None:intergenic	40.0%
!!	GCCCAATTTGTTAGTGTATC+AGG	+	chr7_3:22892591-22892610	None:intergenic	40.0%
!	TTCTTAGCTGGTTTCTTGAC+AGG	+	chr7_3:22892696-22892715	None:intergenic	40.0%
	AGAAACCAGCTAAGAAAGAC+AGG	-	chr7_3:22892700-22892719	Msa1097560:CDS	40.0%
	AGCAAGATTCACACATCTCA+AGG	-	chr7_3:22892726-22892745	Msa1097560:CDS	40.0%
	TCAAGGTTTGAGAGACAGAA+GGG	-	chr7_3:22892743-22892762	Msa1097560:CDS	40.0%
	AGCAAGAACAACATAGCTTC+TGG	-	chr7_3:22892894-22892913	Msa1097560:CDS	40.0%
!	AAAGATGAAAAGGGCACAGA+AGG	-	chr7_3:22892995-22893014	Msa1097560:CDS	40.0%
	TTCGAAGACGAAGGATTCTA+GGG	-	chr7_3:22893022-22893041	Msa1097560:CDS	40.0%
	AGAAAGCAAGAGCAAGAACA+AGG	-	chr7_3:22893045-22893064	Msa1097560:CDS	40.0%
	GAAAGCAAGAGCAAGAACAA+GGG	-	chr7_3:22893046-22893065	Msa1097560:CDS	40.0%
	TAGGGAACAGAAATAGCTGC+TGG	+	chr7_3:22892534-22892553	None:intergenic	45.0%
	CTATGCCTGTCTTTCTTAGC+TGG	+	chr7_3:22892708-22892727	None:intergenic	45.0%
	CTCAAGGTTTGAGAGACAGA+AGG	-	chr7_3:22892742-22892761	Msa1097560:CDS	45.0%
	AAGCCAGCAACACACTTGAA+TGG	-	chr7_3:22892829-22892848	Msa1097560:CDS	45.0%
	TCTTCTTCGTCTTCCGATGA+AGG	-	chr7_3:22892945-22892964	Msa1097560:CDS	45.0%
	GAAGGAATCTTCGAAGACGA+AGG	-	chr7_3:22893013-22893032	Msa1097560:CDS	45.0%
	CTTCGAAGACGAAGGATTCT+AGG	-	chr7_3:22893021-22893040	Msa1097560:CDS	45.0%
	TAGGGAACAGAAATAGCTGC+TGG	+	chr7_3:22892534-22892553	None:intergenic	45.0%
	CTATGCCTGTCTTTCTTAGC+TGG	+	chr7_3:22892708-22892727	None:intergenic	45.0%
	CTCAAGGTTTGAGAGACAGA+AGG	-	chr7_3:22892742-22892761	Msa1097560:CDS	45.0%
	AAGCCAGCAACACACTTGAA+TGG	-	chr7_3:22892829-22892848	Msa1097560:CDS	45.0%
	TCTTCTTCGTCTTCCGATGA+AGG	-	chr7_3:22892945-22892964	Msa1097560:CDS	45.0%
	GAAGGAATCTTCGAAGACGA+AGG	-	chr7_3:22893013-22893032	Msa1097560:CDS	45.0%
	CTTCGAAGACGAAGGATTCT+AGG	-	chr7_3:22893021-22893040	Msa1097560:CDS	45.0%
!!	GTGTGATGGACAAGGCTCAT+GGG	+	chr7_3:22892007-22892026	None:intergenic	50.0%
!!	TGTGTGATGGACAAGGCTCA+TGG	+	chr7_3:22892008-22892027	None:intergenic	50.0%
	GAGCCATTCAAGTGTGTTGC+TGG	+	chr7_3:22892835-22892854	None:intergenic	50.0%
!!	GTGTGATGGACAAGGCTCAT+GGG	+	chr7_3:22892007-22892026	None:intergenic	50.0%
!!	TGTGTGATGGACAAGGCTCA+TGG	+	chr7_3:22892008-22892027	None:intergenic	50.0%
	GAGCCATTCAAGTGTGTTGC+TGG	+	chr7_3:22892835-22892854	None:intergenic	50.0%
	GATGGACAAGGCTCATGGGT+TGG	+	chr7_3:22892003-22892022	None:intergenic	55.0%
	GACTTTCCATCGAGATCGCG+AGG	-	chr7_3:22892769-22892788	Msa1097560:CDS	55.0%
	GAACTTCCTCGCGATCTCGA+TGG	+	chr7_3:22892778-22892797	None:intergenic	55.0%
	GATGGACAAGGCTCATGGGT+TGG	+	chr7_3:22892003-22892022	None:intergenic	55.0%
	GACTTTCCATCGAGATCGCG+AGG	-	chr7_3:22892769-22892788	Msa1097560:CDS	55.0%
	GAACTTCCTCGCGATCTCGA+TGG	+	chr7_3:22892778-22892797	None:intergenic	55.0%
	GCTTCTGGCGATGACGACGA+TGG	-	chr7_3:22892909-22892928	Msa1097560:CDS	60.0%
	GCTTCTGGCGATGACGACGA+TGG	-	chr7_3:22892909-22892928	Msa1097560:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	22891999	22893611	22891999	ID=Msa1097560;Name=Msa1097560
chr7_3	mRNA	22891999	22893611	22891999	ID=Msa1097560-mRNA-1;Parent=Msa1097560;Name=Msa1097560-mRNA-1;_AED=0.09;_eAED=0.09;_QI=355\|0\|0.5\|1\|1\|1\|2\|0\|378
chr7_3	exon	22891999	22892072	22891999	ID=Msa1097560-mRNA-1:exon:5091;Parent=Msa1097560-mRNA-1
chr7_3	exon	22892194	22893611	22892194	ID=Msa1097560-mRNA-1:exon:5090;Parent=Msa1097560-mRNA-1
chr7_3	five_prime_UTR	22893257	22893611	22893257	ID=Msa1097560-mRNA-1:five_prime_utr;Parent=Msa1097560-mRNA-1
chr7_3	CDS	22892194	22893256	22892194	ID=Msa1097560-mRNA-1:cds;Parent=Msa1097560-mRNA-1
chr7_3	CDS	22891999	22892072	22891999	ID=Msa1097560-mRNA-1:cds;Parent=Msa1097560-mRNA-1

Gene Sequence

>Msa1097560

ATGTTTCCTTCAACTTATTGCTCTTTAGGTCCTTACCCTTGTTATAATCCTAATTCATCTTCTTCTTCACACTCATACCCTCCTTTTACTTTTCTTACCCCTGATCAAAATGCTTCTTCTAACACCAACAACAACACTAACAACACCAACAACAACATCAACAACTTTCTTCATGATCCAGCAGCTATTTCTGTTCCCTACACACAAACAACTCATCATCATGTTCCAATTAATCCTGATACACTAACAAATTGGGCTGTTGCTGATTATGCAGCTATGTTGAAACAAGATCTAAGTGGTTCTTCTCATTACAATCTCTCAAATTTGCTCACAAAGAAACCTGTCAAGAAACCAGCTAAGAAAGACAGGCATAGCAAGATTCACACATCTCAAGGTTTGAGAGACAGAAGGGTGAGACTTTCCATCGAGATCGCGAGGAAGTTCTTCGATCTTCAAGACATGTTAGGGTTTGACAAAGCCAGCAACACACTTGAATGGCTCTTCAATAAATCAAAAGAAGCAATTGAAGAGTTAACTAGAAGCAAGAACAACATAGCTTCTGGCGATGACGACGATGGTGATCATAGCTTCTCTTCTTCGTCTTCCGATGAAGGAGATGAAGAAGATTATACTAAAGATAGAAAGATGAAAAGGGCACAGAAGGAATCTTCGAAGACGAAGGATTCTAGGGAGAAAGCAAGAGCAAGAACAAGGGAAAGAGCTAGTGAGATGAAGATGCAAGAAGATTTGAAAGAAAAATATCCTGAAATTGATCAAAATCAACAAATCCTTCATCAATTGATGCCTAATGAAGATGAAACTTCAAAATCACTTCAAAGAGATGATATCTTTAACTTCATTGAGGAATCTATTGTGATTAAGAGAAAGTTGAAGAAATCTTCTTCTCATCATTACCAACAAAACACTAATTTGATGCCTAATAATAGTGATTCTCATGACTCTCCAATGTTATCACCAAATTGGGATGCTAATAATAATAACAATGATGCTGTCACTGGAAGATCCAACTTTTCTGCAATATCAAGAACGAATCTATCATCAGGTTTAAACTTTTTAGGGCTTCAAATCTTTGGAAAATCATGGGAGGATTGCAATACCAGTCCAAATCGATATTAG

Protein sequence

>Msa1097560

MFPSTYCSLGPYPCYNPNSSSSSHSYPPFTFLTPDQNASSNTNNNTNNTNNNINNFLHDPAAISVPYTQTTHHHVPINPDTLTNWAVADYAAMLKQDLSGSSHYNLSNLLTKKPVKKPAKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFNKSKEAIEELTRSKNNIASGDDDDGDHSFSSSSSDEGDEEDYTKDRKMKRAQKESSKTKDSREKARARTRERASEMKMQEDLKEKYPEIDQNQQILHQLMPNEDETSKSLQRDDIFNFIEESIVIKRKLKKSSSHHYQQNTNLMPNNSDSHDSPMLSPNWDANNNNNDAVTGRSNFSAISRTNLSSGLNFLGLQIFGKSWEDCNTSPNRY*