AlfalfaGEDB | Msa1097560

M. sativa cultivar zhongmu-4 / Msa1097560

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03634.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1097560	XP_013447731.1	93.684	380	16	4	1	378	1	374	0.0	545

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1097560	sp\|Q9FYG7\|TCP1_ARATH	37.313	268	131	11	73	312	47	305	3.93e-33	130

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1097560	A0A072TXB5	93.684	380	16	4	1	378	1	374	0.0	545

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TFs/TRs:

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Gene ID	Type	Classification
Msa1097560	TF	TCP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002930	Msa1097560	0.811674	6.222349e-51	-8.615850e-47
Msa0036430	Msa1097560	0.817566	3.085450e-52	-8.615850e-47
Msa0106790	Msa1097560	0.819842	9.391063e-53	-8.615850e-47
Msa0110970	Msa1097560	0.816620	5.034671e-52	-8.615850e-47
Msa0118400	Msa1097560	0.831999	1.213740e-55	-8.615850e-47
Msa0130570	Msa1097560	0.828307	9.668184e-55	-8.615850e-47
Msa0147560	Msa1097560	0.804421	2.177821e-49	-8.615850e-47
Msa0153420	Msa1097560	0.826592	2.492185e-54	-8.615850e-47
Msa0161680	Msa1097560	0.802113	6.543520e-49	-8.615850e-47
Msa0306300	Msa1097560	0.802374	5.783373e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1097560	MtrunA17_Chr7g0220931	93.684	380	16	4	1	378	1	374	0.0	545
Msa1097560	MtrunA17_Chr6g0456881	46.328	354	109	16	73	364	67	401	3.56e-67	218
Msa1097560	MtrunA17_Chr1g0205131	35.602	382	163	14	43	356	27	393	5.07e-44	157
Msa1097560	MtrunA17_Chr4g0062691	33.459	266	141	11	5	245	14	268	7.02e-27	110
Msa1097560	MtrunA17_Chr8g0376571	52.703	74	35	0	116	189	57	130	1.17e-18	87.4
Msa1097560	MtrunA17_Chr2g0316391	53.846	65	30	0	115	179	15	79	4.61e-17	80.9
Msa1097560	MtrunA17_Chr2g0325171	51.562	64	31	0	115	178	19	82	1.24e-16	80.1
Msa1097560	MtrunA17_Chr8g0360441	52.308	65	31	0	115	179	49	113	1.48e-16	80.9
Msa1097560	MtrunA17_Chr4g0040921	52.308	65	31	0	115	179	17	81	1.59e-16	79.7
Msa1097560	MtrunA17_Chr6g0454781	47.561	82	41	1	119	200	48	127	3.61e-16	79.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1097560	AT1G67260.1	37.313	268	131	11	73	312	47	305	4.00e-34	130
Msa1097560	AT1G67260.2	37.687	268	130	11	73	312	47	305	4.09e-34	129
Msa1097560	AT1G67260.3	37.687	268	130	11	73	312	47	305	4.09e-34	129
Msa1097560	AT1G68800.1	54.867	113	42	4	120	229	112	218	2.24e-25	105
Msa1097560	AT1G68800.2	54.867	113	42	4	120	229	112	218	2.39e-25	105
Msa1097560	AT3G18550.2	38.562	153	70	3	113	241	141	293	3.15e-21	95.1
Msa1097560	AT3G18550.3	36.306	157	72	3	113	241	141	297	4.33e-20	91.7
Msa1097560	AT3G18550.1	36.306	157	72	3	113	241	141	297	6.46e-20	91.3
Msa1097560	AT3G18550.4	36.306	157	72	3	113	241	141	297	6.46e-20	91.3
Msa1097560	AT4G18390.1	36.986	146	88	3	103	248	27	168	9.73e-18	84.3

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Find 79 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATGAAAAGGGCACAGA+AGG	0.517893	7_3:-22892593	Msa1097560:CDS
AAAGTTGTTGATGTTGTTGT+TGG	0.410045	7_3:+22893089	None:intergenic
AAATTGATGATGATAGGTGA+AGG	0.598522	7_3:+22893476	None:intergenic
AACCTAGAAGAGAATAAAAG+TGG	0.536483	7_3:+22893445	None:intergenic
AAGCCAGCAACACACTTGAA+TGG	0.532128	7_3:-22892759	Msa1097560:CDS
AAGGCTTATTCTTCTAACAA+TGG	0.526389	7_3:-22893550	Msa1097560:five_prime_UTR
AATAACAATGATGCTGTCAC+TGG	0.496363	7_3:-22892238	Msa1097560:CDS
AATATCAGCTAATATCGATT+TGG	0.375751	7_3:+22891991	None:intergenic
AATCTTTGGAAAATCATGGG+AGG	0.624471	7_3:-22892028	Msa1097560:CDS
AATGAACTACTTACTAGTTA+AGG	0.419311	7_3:+22893413	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTCATATTTATCTGTGTGA+TGG	+	chr7_3:22892021-22892040	None:intergenic	30.0%
CATCACACAGATAAATATGA+AGG	-	chr7_3:22892019-22892038	Msa1097560:CDS	30.0%
AAGGCTTATTCTTCTAACAA+TGG	-	chr7_3:22892038-22892057	Msa1097560:CDS	30.0%
AACCTAGAAGAGAATAAAAG+TGG	+	chr7_3:22892146-22892165	None:intergenic	30.0%
GGTATATAGCTATGTTCTTA+TGG	+	chr7_3:22892262-22892281	None:intergenic	30.0%
CACAACAAAAAAAGAACAAG+AGG	+	chr7_3:22892283-22892302	None:intergenic	30.0%
TTGTTGTGAAACAAGAAACT+AGG	-	chr7_3:22892295-22892314	Msa1097560:CDS	30.0%
TGTTGTGAAACAAGAAACTA+GGG	-	chr7_3:22892296-22892315	Msa1097560:CDS	30.0%
TTAGGATTATAACAAGGGTA+AGG	+	chr7_3:22892387-22892406	None:intergenic	30.0%
TGTGAAGAAGAAGATGAATT+AGG	+	chr7_3:22892405-22892424	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	22891999	22893611	22891999	ID=Msa1097560;Name=Msa1097560
chr7_3	mRNA	22891999	22893611	22891999	ID=Msa1097560-mRNA-1;Parent=Msa1097560;Name=Msa1097560-mRNA-1;_AED=0.09;_eAED=0.09;_QI=355\|0\|0.5\|1\|1\|1\|2\|0\|378
chr7_3	exon	22891999	22892072	22891999	ID=Msa1097560-mRNA-1:exon:5091;Parent=Msa1097560-mRNA-1
chr7_3	exon	22892194	22893611	22892194	ID=Msa1097560-mRNA-1:exon:5090;Parent=Msa1097560-mRNA-1
chr7_3	five_prime_UTR	22893257	22893611	22893257	ID=Msa1097560-mRNA-1:five_prime_utr;Parent=Msa1097560-mRNA-1
chr7_3	CDS	22892194	22893256	22892194	ID=Msa1097560-mRNA-1:cds;Parent=Msa1097560-mRNA-1
chr7_3	CDS	22891999	22892072	22891999	ID=Msa1097560-mRNA-1:cds;Parent=Msa1097560-mRNA-1

Gene Sequence

>Msa1097560

ATGTTTCCTTCAACTTATTGCTCTTTAGGTCCTTACCCTTGTTATAATCCTAATTCATCTTCTTCTTCACACTCATACCCTCCTTTTACTTTTCTTACCCCTGATCAAAATGCTTCTTCTAACACCAACAACAACACTAACAACACCAACAACAACATCAACAACTTTCTTCATGATCCAGCAGCTATTTCTGTTCCCTACACACAAACAACTCATCATCATGTTCCAATTAATCCTGATACACTAACAAATTGGGCTGTTGCTGATTATGCAGCTATGTTGAAACAAGATCTAAGTGGTTCTTCTCATTACAATCTCTCAAATTTGCTCACAAAGAAACCTGTCAAGAAACCAGCTAAGAAAGACAGGCATAGCAAGATTCACACATCTCAAGGTTTGAGAGACAGAAGGGTGAGACTTTCCATCGAGATCGCGAGGAAGTTCTTCGATCTTCAAGACATGTTAGGGTTTGACAAAGCCAGCAACACACTTGAATGGCTCTTCAATAAATCAAAAGAAGCAATTGAAGAGTTAACTAGAAGCAAGAACAACATAGCTTCTGGCGATGACGACGATGGTGATCATAGCTTCTCTTCTTCGTCTTCCGATGAAGGAGATGAAGAAGATTATACTAAAGATAGAAAGATGAAAAGGGCACAGAAGGAATCTTCGAAGACGAAGGATTCTAGGGAGAAAGCAAGAGCAAGAACAAGGGAAAGAGCTAGTGAGATGAAGATGCAAGAAGATTTGAAAGAAAAATATCCTGAAATTGATCAAAATCAACAAATCCTTCATCAATTGATGCCTAATGAAGATGAAACTTCAAAATCACTTCAAAGAGATGATATCTTTAACTTCATTGAGGAATCTATTGTGATTAAGAGAAAGTTGAAGAAATCTTCTTCTCATCATTACCAACAAAACACTAATTTGATGCCTAATAATAGTGATTCTCATGACTCTCCAATGTTATCACCAAATTGGGATGCTAATAATAATAACAATGATGCTGTCACTGGAAGATCCAACTTTTCTGCAATATCAAGAACGAATCTATCATCAGGTTTAAACTTTTTAGGGCTTCAAATCTTTGGAAAATCATGGGAGGATTGCAATACCAGTCCAAATCGATATTAG

Protein sequence

>Msa1097560

MFPSTYCSLGPYPCYNPNSSSSSHSYPPFTFLTPDQNASSNTNNNTNNTNNNINNFLHDPAAISVPYTQTTHHHVPINPDTLTNWAVADYAAMLKQDLSGSSHYNLSNLLTKKPVKKPAKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFNKSKEAIEELTRSKNNIASGDDDDGDHSFSSSSSDEGDEEDYTKDRKMKRAQKESSKTKDSREKARARTRERASEMKMQEDLKEKYPEIDQNQQILHQLMPNEDETSKSLQRDDIFNFIEESIVIKRKLKKSSSHHYQQNTNLMPNNSDSHDSPMLSPNWDANNNNNDAVTGRSNFSAISRTNLSSGLNFLGLQIFGKSWEDCNTSPNRY*