Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1010110 | XP_013447731.1 | 94.667 | 375 | 17 | 3 | 1 | 373 | 1 | 374 | 0.0 | 549 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1010110 | sp|Q9FYG7|TCP1_ARATH | 37.546 | 269 | 129 | 12 | 73 | 312 | 47 | 305 | 5.04e-33 | 129 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1010110 | A0A072TXB5 | 94.667 | 375 | 17 | 3 | 1 | 373 | 1 | 374 | 0.0 | 549 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1010110 | TF | TCP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002930 | Msa1010110 | 0.829549 | 4.837928e-55 | -8.615850e-47 |
| Msa0017510 | Msa1010110 | 0.839253 | 1.770116e-57 | -8.615850e-47 |
| Msa0022640 | Msa1010110 | 0.825852 | 3.740169e-54 | -8.615850e-47 |
| Msa0028640 | Msa1010110 | 0.808513 | 2.985441e-50 | -8.615850e-47 |
| Msa0034270 | Msa1010110 | 0.802901 | 4.502771e-49 | -8.615850e-47 |
| Msa0036430 | Msa1010110 | 0.834674 | 2.614564e-56 | -8.615850e-47 |
| Msa0072370 | Msa1010110 | 0.804388 | 2.212341e-49 | -8.615850e-47 |
| Msa0078430 | Msa1010110 | 0.815283 | 1.000864e-51 | -8.615850e-47 |
| Msa0084500 | Msa1010110 | 0.825047 | 5.798967e-54 | -8.615850e-47 |
| Msa0089630 | Msa1010110 | 0.801424 | 9.065102e-49 | -8.615850e-47 |
| Msa0103000 | Msa1010110 | 0.804850 | 1.772560e-49 | -8.615850e-47 |
| Msa0106790 | Msa1010110 | 0.835423 | 1.692889e-56 | -8.615850e-47 |
| Msa0110970 | Msa1010110 | 0.833862 | 4.179500e-56 | -8.615850e-47 |
| Msa0118380 | Msa1010110 | 0.819708 | 1.007980e-52 | -8.615850e-47 |
| Msa0118400 | Msa1010110 | 0.859850 | 3.109020e-63 | -8.615850e-47 |
| Msa0611380 | Msa1010110 | 0.825160 | 5.453868e-54 | -8.615850e-47 |
| Msa0615590 | Msa1010110 | 0.816800 | 4.588406e-52 | -8.615850e-47 |
| Msa0616220 | Msa1010110 | 0.820873 | 5.449087e-53 | -8.615850e-47 |
| Msa0628640 | Msa1010110 | 0.840733 | 7.279419e-58 | -8.615850e-47 |
| Msa0631120 | Msa1010110 | 0.845710 | 3.426499e-59 | -8.615850e-47 |
| Msa0650020 | Msa1010110 | 0.817836 | 2.682569e-52 | -8.615850e-47 |
| Msa0657970 | Msa1010110 | 0.817090 | 3.948548e-52 | -8.615850e-47 |
| Msa0666030 | Msa1010110 | 0.809485 | 1.848692e-50 | -8.615850e-47 |
| Msa0669340 | Msa1010110 | 0.852591 | 4.176250e-61 | -8.615850e-47 |
| Msa0682530 | Msa1010110 | 0.814838 | 1.256304e-51 | -8.615850e-47 |
| Msa0684500 | Msa1010110 | 0.812756 | 3.611569e-51 | -8.615850e-47 |
| Msa0699550 | Msa1010110 | 0.814258 | 1.688633e-51 | -8.615850e-47 |
| Msa0709500 | Msa1010110 | 0.802146 | 6.442638e-49 | -8.615850e-47 |
| Msa0716450 | Msa1010110 | 0.810362 | 1.196992e-50 | -8.615850e-47 |
| Msa0717260 | Msa1010110 | 0.831508 | 1.603934e-55 | -8.615850e-47 |
| Msa0734660 | Msa1010110 | 0.800584 | 1.345693e-48 | -8.615850e-47 |
| Msa0758320 | Msa1010110 | 0.812936 | 3.299007e-51 | -8.615850e-47 |
| Msa0790850 | Msa1010110 | 0.802606 | 5.180286e-49 | -8.615850e-47 |
| Msa0812820 | Msa1010110 | 0.817332 | 3.483317e-52 | -8.615850e-47 |
| Msa0813670 | Msa1010110 | 0.803776 | 2.965822e-49 | -8.615850e-47 |
| Msa0837440 | Msa1010110 | 0.803932 | 2.752692e-49 | -8.615850e-47 |
| Msa0837980 | Msa1010110 | 0.811578 | 6.526735e-51 | -8.615850e-47 |
| Msa0130570 | Msa1010110 | 0.854277 | 1.370223e-61 | -8.615850e-47 |
| Msa0141100 | Msa1010110 | 0.836862 | 7.298376e-57 | -8.615850e-47 |
| Msa0153420 | Msa1010110 | 0.840266 | 9.646100e-58 | -8.615850e-47 |
| Msa0157290 | Msa1010110 | 0.839078 | 1.964831e-57 | -8.615850e-47 |
| Msa0161680 | Msa1010110 | 0.826552 | 2.548025e-54 | -8.615850e-47 |
| Msa0173990 | Msa1010110 | 0.857449 | 1.620428e-62 | -8.615850e-47 |
| Msa0176470 | Msa1010110 | 0.836104 | 1.137880e-56 | -8.615850e-47 |
| Msa0191040 | Msa1010110 | 0.819204 | 1.313110e-52 | -8.615850e-47 |
| Msa0203030 | Msa1010110 | 0.800804 | 1.213894e-48 | -8.615850e-47 |
| Msa0220300 | Msa1010110 | 0.803144 | 4.010117e-49 | -8.615850e-47 |
| Msa0233340 | Msa1010110 | 0.818968 | 1.485843e-52 | -8.615850e-47 |
| Msa0236110 | Msa1010110 | 0.805390 | 1.366035e-49 | -8.615850e-47 |
| Msa0374850 | Msa1010110 | 0.826482 | 2.647571e-54 | -8.615850e-47 |
| Msa0375090 | Msa1010110 | 0.817522 | 3.157417e-52 | -8.615850e-47 |
| Msa0387510 | Msa1010110 | 0.802096 | 6.598400e-49 | -8.615850e-47 |
| Msa0398710 | Msa1010110 | 0.802945 | 4.409298e-49 | -8.615850e-47 |
| Msa0419820 | Msa1010110 | 0.824622 | 7.306396e-54 | -8.615850e-47 |
| Msa0436500 | Msa1010110 | 0.829104 | 6.205342e-55 | -8.615850e-47 |
| Msa0461730 | Msa1010110 | 0.814506 | 1.488450e-51 | -8.615850e-47 |
| Msa0470340 | Msa1010110 | 0.826748 | 2.287487e-54 | -8.615850e-47 |
| Msa0481110 | Msa1010110 | 0.824311 | 8.645752e-54 | -8.615850e-47 |
| Msa0999350 | Msa1010110 | 0.812716 | 3.686065e-51 | -8.615850e-47 |
| Msa0999360 | Msa1010110 | 0.805116 | 1.559402e-49 | -8.615850e-47 |
| Msa0999400 | Msa1010110 | 0.805314 | 1.417141e-49 | -8.615850e-47 |
| Msa1002620 | Msa1010110 | 0.800671 | 1.291921e-48 | -8.615850e-47 |
| Msa1010110 | Msa1013400 | 0.818990 | 1.468653e-52 | -8.615850e-47 |
| Msa1010110 | Msa1020720 | 0.811100 | 8.289970e-51 | -8.615850e-47 |
| Msa1010110 | Msa1033560 | 0.819572 | 1.082719e-52 | -8.615850e-47 |
| Msa1010110 | Msa1034680 | 0.819501 | 1.123591e-52 | -8.615850e-47 |
| Msa1010110 | Msa1073340 | 0.839362 | 1.657763e-57 | -8.615850e-47 |
| Msa1010110 | Msa1093530 | 0.809099 | 2.236481e-50 | -8.615850e-47 |
| Msa1010110 | Msa1097560 | 0.846237 | 2.464289e-59 | -8.615850e-47 |
| Msa1010110 | Msa1113850 | 0.811710 | 6.110593e-51 | -8.615850e-47 |
| Msa1010110 | Msa1125760 | 0.803759 | 2.990401e-49 | -8.615850e-47 |
| Msa1010110 | Msa1139810 | 0.803606 | 3.217518e-49 | -8.615850e-47 |
| Msa1010110 | Msa1139880 | 0.874991 | 4.378053e-68 | -8.615850e-47 |
| Msa1010110 | Msa1160400 | 0.811719 | 6.083672e-51 | -8.615850e-47 |
| Msa1010110 | Msa1171360 | 0.800528 | 1.381467e-48 | -8.615850e-47 |
| Msa1010110 | Msa1172450 | 0.801135 | 1.038554e-48 | -8.615850e-47 |
| Msa1010110 | Msa1179460 | 0.803181 | 3.939867e-49 | -8.615850e-47 |
| Msa1010110 | Msa1203000 | 0.809314 | 2.011944e-50 | -8.615850e-47 |
| Msa1010110 | Msa1217940 | 0.818430 | 1.968374e-52 | -8.615850e-47 |
| Msa1010110 | Msa1218480 | 0.813740 | 2.196429e-51 | -8.615850e-47 |
| Msa1010110 | Msa1218600 | 0.812144 | 4.914372e-51 | -8.615850e-47 |
| Msa1010110 | Msa1219260 | 0.808702 | 2.720058e-50 | -8.615850e-47 |
| Msa1010110 | Msa1254700 | 0.803885 | 2.815522e-49 | -8.615850e-47 |
| Msa1010110 | Msa1266960 | 0.811271 | 7.611816e-51 | -8.615850e-47 |
| Msa1010110 | Msa1271260 | 0.800365 | 1.491738e-48 | -8.615850e-47 |
| Msa1010110 | Msa1289280 | 0.813802 | 2.128755e-51 | -8.615850e-47 |
| Msa1010110 | Msa1308380 | 0.809116 | 2.218041e-50 | -8.615850e-47 |
| Msa1010110 | Msa1342430 | 0.815823 | 7.587040e-52 | -8.615850e-47 |
| Msa1010110 | Msa1399560 | 0.814336 | 1.622782e-51 | -8.615850e-47 |
| Msa1010110 | Msa1411070 | 0.803098 | 4.099200e-49 | -8.615850e-47 |
| Msa1010110 | Msa1424690 | 0.808361 | 3.216345e-50 | -8.615850e-47 |
| Msa0251240 | Msa1010110 | 0.847394 | 1.189112e-59 | -8.615850e-47 |
| Msa0311690 | Msa1010110 | 0.818725 | 1.687298e-52 | -8.615850e-47 |
| Msa0314630 | Msa1010110 | 0.801848 | 7.419800e-49 | -8.615850e-47 |
| Msa0322830 | Msa1010110 | 0.820425 | 6.906080e-53 | -8.615850e-47 |
| Msa0323610 | Msa1010110 | 0.802874 | 4.559670e-49 | -8.615850e-47 |
| Msa0334500 | Msa1010110 | 0.803274 | 3.770265e-49 | -8.615850e-47 |
| Msa0362780 | Msa1010110 | 0.820230 | 7.655720e-53 | -8.615850e-47 |
| Msa0363350 | Msa1010110 | 0.806332 | 8.661525e-50 | -8.615850e-47 |
| Msa0483860 | Msa1010110 | 0.807508 | 4.885484e-50 | -8.615850e-47 |
| Msa0503580 | Msa1010110 | 0.819997 | 8.654870e-53 | -8.615850e-47 |
| Msa0510980 | Msa1010110 | 0.803311 | 3.703764e-49 | -8.615850e-47 |
| Msa0520510 | Msa1010110 | 0.817589 | 3.049320e-52 | -8.615850e-47 |
| Msa0531430 | Msa1010110 | 0.851357 | 9.357364e-61 | -8.615850e-47 |
| Msa0534570 | Msa1010110 | 0.810809 | 9.584029e-51 | -8.615850e-47 |
| Msa0534590 | Msa1010110 | 0.855264 | 7.090589e-62 | -8.615850e-47 |
| Msa0590800 | Msa1010110 | 0.861158 | 1.248937e-63 | -8.615850e-47 |
| Msa0853320 | Msa1010110 | 0.810764 | 9.802122e-51 | -8.615850e-47 |
| Msa0858840 | Msa1010110 | 0.826607 | 2.472828e-54 | -8.615850e-47 |
| Msa0862100 | Msa1010110 | 0.809068 | 2.270959e-50 | -8.615850e-47 |
| Msa0880140 | Msa1010110 | 0.841306 | 5.146963e-58 | -8.615850e-47 |
| Msa0885060 | Msa1010110 | 0.828540 | 8.492582e-55 | -8.615850e-47 |
| Msa0902760 | Msa1010110 | 0.811287 | 7.548379e-51 | -8.615850e-47 |
| Msa0966420 | Msa1010110 | 0.804521 | 2.075556e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1010110 | MtrunA17_Chr7g0220931 | 94.667 | 375 | 17 | 3 | 1 | 373 | 1 | 374 | 0.0 | 549 |
| Msa1010110 | MtrunA17_Chr6g0456881 | 47.110 | 346 | 102 | 16 | 73 | 356 | 67 | 393 | 1.04e-65 | 214 |
| Msa1010110 | MtrunA17_Chr1g0205131 | 35.340 | 382 | 164 | 14 | 43 | 356 | 27 | 393 | 9.98e-43 | 153 |
| Msa1010110 | MtrunA17_Chr4g0062691 | 33.459 | 266 | 141 | 11 | 5 | 245 | 14 | 268 | 6.22e-27 | 110 |
| Msa1010110 | MtrunA17_Chr8g0376571 | 52.703 | 74 | 35 | 0 | 116 | 189 | 57 | 130 | 1.08e-18 | 87.4 |
| Msa1010110 | MtrunA17_Chr2g0316391 | 53.846 | 65 | 30 | 0 | 115 | 179 | 15 | 79 | 5.82e-17 | 80.5 |
| Msa1010110 | MtrunA17_Chr2g0325171 | 51.562 | 64 | 31 | 0 | 115 | 178 | 19 | 82 | 1.34e-16 | 80.1 |
| Msa1010110 | MtrunA17_Chr4g0040921 | 52.308 | 65 | 31 | 0 | 115 | 179 | 17 | 81 | 1.70e-16 | 79.7 |
| Msa1010110 | MtrunA17_Chr8g0360441 | 52.308 | 65 | 31 | 0 | 115 | 179 | 49 | 113 | 1.89e-16 | 80.5 |
| Msa1010110 | MtrunA17_Chr6g0454781 | 47.561 | 82 | 41 | 1 | 119 | 200 | 48 | 127 | 3.65e-16 | 78.6 |
| Msa1010110 | MtrunA17_Chr7g0219461 | 51.667 | 60 | 29 | 0 | 119 | 178 | 56 | 115 | 1.66e-14 | 73.9 |
| Msa1010110 | MtrunA17_Chr4g0061561 | 48.333 | 60 | 31 | 0 | 119 | 178 | 56 | 115 | 4.97e-13 | 69.3 |
| Msa1010110 | MtrunA17_Chr3g0086961 | 48.333 | 60 | 31 | 0 | 119 | 178 | 56 | 115 | 2.37e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1010110 | AT1G67260.2 | 37.546 | 269 | 129 | 12 | 73 | 312 | 47 | 305 | 4.63e-34 | 129 |
| Msa1010110 | AT1G67260.3 | 37.546 | 269 | 129 | 12 | 73 | 312 | 47 | 305 | 4.63e-34 | 129 |
| Msa1010110 | AT1G67260.1 | 37.546 | 269 | 129 | 12 | 73 | 312 | 47 | 305 | 5.12e-34 | 129 |
| Msa1010110 | AT1G68800.2 | 54.867 | 113 | 42 | 4 | 120 | 229 | 112 | 218 | 2.14e-25 | 105 |
| Msa1010110 | AT1G68800.1 | 54.867 | 113 | 42 | 4 | 120 | 229 | 112 | 218 | 2.29e-25 | 105 |
| Msa1010110 | AT3G18550.2 | 39.216 | 153 | 69 | 3 | 113 | 241 | 141 | 293 | 9.05e-22 | 96.7 |
| Msa1010110 | AT3G18550.3 | 37.580 | 157 | 70 | 4 | 113 | 241 | 141 | 297 | 1.43e-20 | 93.2 |
| Msa1010110 | AT3G18550.1 | 37.580 | 157 | 70 | 4 | 113 | 241 | 141 | 297 | 1.94e-20 | 92.8 |
| Msa1010110 | AT3G18550.4 | 37.580 | 157 | 70 | 4 | 113 | 241 | 141 | 297 | 1.94e-20 | 92.8 |
| Msa1010110 | AT4G18390.1 | 37.671 | 146 | 87 | 3 | 103 | 248 | 27 | 168 | 3.23e-18 | 85.5 |
| Msa1010110 | AT4G18390.2 | 37.671 | 146 | 87 | 3 | 103 | 248 | 27 | 168 | 3.23e-18 | 85.5 |
| Msa1010110 | AT1G30210.2 | 53.968 | 63 | 29 | 0 | 116 | 178 | 46 | 108 | 1.60e-16 | 80.1 |
| Msa1010110 | AT1G30210.1 | 53.968 | 63 | 29 | 0 | 116 | 178 | 46 | 108 | 1.60e-16 | 80.1 |
| Msa1010110 | AT1G53230.1 | 51.515 | 66 | 32 | 0 | 115 | 180 | 44 | 109 | 2.62e-16 | 80.1 |
| Msa1010110 | AT1G53230.2 | 51.515 | 66 | 32 | 0 | 115 | 180 | 44 | 109 | 2.62e-16 | 80.1 |
| Msa1010110 | AT3G15030.2 | 52.308 | 65 | 31 | 0 | 115 | 179 | 40 | 104 | 3.37e-16 | 80.1 |
| Msa1010110 | AT3G15030.4 | 52.308 | 65 | 31 | 0 | 115 | 179 | 40 | 104 | 3.37e-16 | 80.1 |
| Msa1010110 | AT3G15030.3 | 52.308 | 65 | 31 | 0 | 115 | 179 | 40 | 104 | 3.37e-16 | 80.1 |
| Msa1010110 | AT3G15030.1 | 52.308 | 65 | 31 | 0 | 115 | 179 | 40 | 104 | 3.37e-16 | 80.1 |
| Msa1010110 | AT2G31070.1 | 51.562 | 64 | 31 | 0 | 115 | 178 | 24 | 87 | 6.10e-16 | 79.0 |
| Msa1010110 | AT3G02150.1 | 53.333 | 60 | 28 | 0 | 119 | 178 | 73 | 132 | 1.26e-14 | 73.9 |
| Msa1010110 | AT3G02150.2 | 53.333 | 60 | 28 | 0 | 119 | 178 | 73 | 132 | 1.88e-14 | 74.3 |
| Msa1010110 | AT5G60970.1 | 46.667 | 60 | 32 | 0 | 119 | 178 | 62 | 121 | 1.08e-12 | 68.9 |
| Msa1010110 | AT5G08070.2 | 45.000 | 60 | 33 | 0 | 119 | 178 | 32 | 91 | 2.54e-11 | 63.5 |
| Msa1010110 | AT5G08070.1 | 45.000 | 60 | 33 | 0 | 119 | 178 | 32 | 91 | 2.54e-11 | 63.5 |
Find 90 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACGGATATTAAATATTTA+AGG | 0.113050 | 7_1:-12742978 | None:intergenic |
| CCTTCAACTTATTGCTCTTT+AGG | 0.129653 | 7_1:+12743137 | Msa1010110:CDS |
| ATCCTGATACACTAACAAAT+TGG | 0.193845 | 7_1:+12743363 | Msa1010110:CDS |
| GCCCAATTTGTTAGTGTATC+AGG | 0.208804 | 7_1:-12743365 | None:intergenic |
| CTCCAATGTTATCACCAAAT+TGG | 0.217754 | 7_1:+12744092 | Msa1010110:CDS |
| GTTAGTGTATCAGGATTAAT+TGG | 0.223236 | 7_1:-12743356 | None:intergenic |
| GGTATATAGCTATGTTCTTA+TGG | 0.234961 | 7_1:-12743036 | None:intergenic |
| ATCAACCACACTTTAAATAT+TGG | 0.260460 | 7_1:-12744632 | None:intergenic |
| CTTCGAAGACGAAGGATTCT+AGG | 0.286350 | 7_1:+12743798 | Msa1010110:CDS |
| TTCTTAGCTGGTTTCTTGAC+AGG | 0.328037 | 7_1:-12743470 | None:intergenic |
| TGTGAAGAAGAAGATGAATT+AGG | 0.330614 | 7_1:-12743179 | None:intergenic |
| CACGGATATTAAATATTTAA+GGG | 0.331420 | 7_1:-12742977 | None:intergenic |
| TTCGATCTTCAAGACATGTT+AGG | 0.334610 | 7_1:+12743575 | Msa1010110:CDS |
| CTATGCCTGTCTTTCTTAGC+TGG | 0.335007 | 7_1:-12743482 | None:intergenic |
| TTTGAAGTTTCATCCTCATT+AGG | 0.336904 | 7_1:-12743935 | None:intergenic |
| TATTTAATATCCGTGTAAAA+AGG | 0.339349 | 7_1:+12742985 | Msa1010110:five_prime_UTR |
| TTATTATTAGCATCCCAATT+TGG | 0.341400 | 7_1:-12744106 | None:intergenic |
| GAGCCATTCAAGTGTGTTGC+TGG | 0.358400 | 7_1:-12743609 | None:intergenic |
| TCATGACAATCACTATTATT+AGG | 0.360860 | 7_1:-12744067 | None:intergenic |
| AATATCAGCTAATATCGATT+TGG | 0.375751 | 7_1:-12744375 | None:intergenic |
| GCCAAGGGCATGTGACAGTT+TGG | 0.379114 | 7_1:+12744572 | Msa1010110:three_prime_UTR |
| ATGATATGGAAAGTGAGATT+TGG | 0.380443 | 7_1:-12742851 | None:intergenic |
| TCAGGGGTAAGAAAAGTAAA+AGG | 0.386359 | 7_1:-12743212 | None:intergenic |
| GTATATAGCTATGTTCTTAT+GGG | 0.394932 | 7_1:-12743035 | None:intergenic |
| GAATACAGACATTGTCTAAA+GGG | 0.408582 | 7_1:-12744497 | None:intergenic |
| TTCAAATCTTTGGAAAATCA+TGG | 0.409744 | 7_1:+12744334 | Msa1010110:CDS |
| AAAGTTGTTGATGTTGTTGT+TGG | 0.410045 | 7_1:-12743276 | None:intergenic |
| TCCAATGTTATCACCAAATT+GGG | 0.411724 | 7_1:+12744093 | Msa1010110:CDS |
| CTAAAGATAGAAAGATGAAA+AGG | 0.414926 | 7_1:+12743762 | Msa1010110:CDS |
| AATGAACTACTTACTAGTTA+AGG | 0.419311 | 7_1:-12742953 | None:intergenic |
| TCTTGATATTGCAGAAAAGT+TGG | 0.424180 | 7_1:-12744155 | None:intergenic |
| TCTTCTTCGTCTTCCGATGA+AGG | 0.430527 | 7_1:+12743722 | Msa1010110:CDS |
| TCCTGATACACTAACAAATT+GGG | 0.434497 | 7_1:+12743364 | Msa1010110:CDS |
| TCGATCTTCAAGACATGTTA+GGG | 0.442491 | 7_1:+12743576 | Msa1010110:CDS |
| GGTGTTGTTAGTGTTGTTGT+TGG | 0.445348 | 7_1:-12743255 | None:intergenic |
| AGCAAGAACAACATAGCTTC+TGG | 0.450038 | 7_1:+12743671 | Msa1010110:CDS |
| ATCAATTGATGAAGGATTTG+TGG | 0.452195 | 7_1:-12743911 | None:intergenic |
| ATGTGACAGTTTGGCTTCAA+AGG | 0.461761 | 7_1:+12744581 | Msa1010110:three_prime_UTR |
| TTGTTGTGAAACAAGAAACT+AGG | 0.471445 | 7_1:+12743072 | Msa1010110:five_prime_UTR |
| TGAAAGAAATTGATGATGAT+AGG | 0.471978 | 7_1:-12742896 | None:intergenic |
| TGATGAGTTGTTTGTGTGTA+GGG | 0.490224 | 7_1:-12743326 | None:intergenic |
| AATAACAATGATGCTGTCAC+TGG | 0.496363 | 7_1:+12744127 | Msa1010110:CDS |
| CATTAGGCATCAATTGATGA+AGG | 0.499616 | 7_1:-12743919 | None:intergenic |
| CCTAAAGAGCAATAAGTTGA+AGG | 0.500471 | 7_1:-12743137 | None:intergenic |
| GATTGATTACTTAACTCAGA+TGG | 0.502518 | 7_1:-12743103 | None:intergenic |
| TCAAGAACGAATCTATCATC+AGG | 0.510472 | 7_1:+12744172 | Msa1010110:CDS |
| ATCTTCTTCATCTCCTTCAT+CGG | 0.512276 | 7_1:-12743735 | None:intergenic |
| GCCAAACTGTCACATGCCCT+TGG | 0.515813 | 7_1:-12744573 | None:intergenic |
| AGAATACAGACATTGTCTAA+AGG | 0.515998 | 7_1:-12744498 | None:intergenic |
| AAAGATGAAAAGGGCACAGA+AGG | 0.517893 | 7_1:+12743772 | Msa1010110:CDS |
| AGCAAGATTCACACATCTCA+AGG | 0.519514 | 7_1:+12743503 | Msa1010110:CDS |
| TGTTGTGAAACAAGAAACTA+GGG | 0.521317 | 7_1:+12743073 | Msa1010110:five_prime_UTR |
| TAAAGATAGAAAGATGAAAA+GGG | 0.526209 | 7_1:+12743763 | Msa1010110:CDS |
| AAGGCTTATTCTTCTAACAA+TGG | 0.526389 | 7_1:+12742816 | Msa1010110:five_prime_UTR |
| TCAAATCTTTGGAAAATCAT+GGG | 0.526493 | 7_1:+12744335 | Msa1010110:CDS |
| GAACTTCCTCGCGATCTCGA+TGG | 0.528472 | 7_1:-12743552 | None:intergenic |
| TAGGGAACAGAAATAGCTGC+TGG | 0.529350 | 7_1:-12743308 | None:intergenic |
| AGAAAACAAGAGCAAGAGCA+AGG | 0.530089 | 7_1:+12743822 | Msa1010110:CDS |
| AAGCCAGCAACACACTTGAA+TGG | 0.532128 | 7_1:+12743606 | Msa1010110:CDS |
| AGAAACCAGCTAAGAAAGAC+AGG | 0.535037 | 7_1:+12743477 | Msa1010110:CDS |
| AACCTAGAAGAGAATAAAAG+TGG | 0.536483 | 7_1:-12742921 | None:intergenic |
| TCATCAATTGATGCCTAATG+AGG | 0.536962 | 7_1:+12743922 | Msa1010110:CDS |
| TTCGAAGACGAAGGATTCTA+GGG | 0.537014 | 7_1:+12743799 | Msa1010110:CDS |
| TGTGTGATGGACAAGGCTCA+TGG | 0.546089 | 7_1:-12742781 | None:intergenic |
| TGATATCTTTAACTTCATTG+AGG | 0.548363 | 7_1:+12743973 | Msa1010110:CDS |
| GGGGTAAGAAAAGTAAAAGG+AGG | 0.548490 | 7_1:-12743209 | None:intergenic |
| TCATATTTATCTGTGTGTGA+TGG | 0.554232 | 7_1:-12742794 | None:intergenic |
| TCTAGCCAATATTTAAAGTG+TGG | 0.554663 | 7_1:+12744627 | Msa1010110:three_prime_UTR |
| TTAGGATTATAACAAGGGTA+AGG | 0.556043 | 7_1:-12743161 | None:intergenic |
| TCCCAATTTGGTGATAACAT+TGG | 0.563066 | 7_1:-12744094 | None:intergenic |
| TCACACACAGATAAATATGA+AGG | 0.567557 | 7_1:+12742797 | Msa1010110:five_prime_UTR |
| ATGAATTAGGATTATAACAA+GGG | 0.570279 | 7_1:-12743166 | None:intergenic |
| GGGTAAGAAAAGTAAAAGGA+GGG | 0.575339 | 7_1:-12743208 | None:intergenic |
| GTGTGATGGACAAGGCTCAT+GGG | 0.578531 | 7_1:-12742780 | None:intergenic |
| ATGATGAGTTGTTTGTGTGT+AGG | 0.581066 | 7_1:-12743327 | None:intergenic |
| AATTGATGATGATAGGTGAA+GGG | 0.587918 | 7_1:-12742889 | None:intergenic |
| CAGCTAATATCGATTTGGAC+TGG | 0.588709 | 7_1:-12744370 | None:intergenic |
| GAAAACAAGAGCAAGAGCAA+GGG | 0.591086 | 7_1:+12743823 | Msa1010110:CDS |
| GATGAATTAGGATTATAACA+AGG | 0.592158 | 7_1:-12743167 | None:intergenic |
| CTCAAGGTTTGAGAGACAGA+AGG | 0.592962 | 7_1:+12743519 | Msa1010110:CDS |
| AAATTGATGATGATAGGTGA+AGG | 0.598522 | 7_1:-12742890 | None:intergenic |
| GACTTTCCATCGAGATCGCG+AGG | 0.608900 | 7_1:+12743546 | Msa1010110:CDS |
| GATGGACAAGGCTCATGGGT+TGG | 0.611574 | 7_1:-12742776 | None:intergenic |
| TCAAGGTTTGAGAGACAGAA+GGG | 0.615028 | 7_1:+12743520 | Msa1010110:CDS |
| AATCTTTGGAAAATCATGGG+AGG | 0.624471 | 7_1:+12744338 | Msa1010110:CDS |
| GAAGGAATCTTCGAAGACGA+AGG | 0.639563 | 7_1:+12743790 | Msa1010110:CDS |
| TTTGCTCAAAGATCTGCCAA+GGG | 0.657035 | 7_1:+12744557 | Msa1010110:three_prime_UTR |
| GCTTCTGGCGATGACGACGA+TGG | 0.659720 | 7_1:+12743686 | Msa1010110:CDS |
| TTATCTGTGTGTGATGGACA+AGG | 0.672150 | 7_1:-12742788 | None:intergenic |
| ATGTTGAAACAAGATCTAAG+TGG | 0.698091 | 7_1:+12743407 | Msa1010110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATAAAATTAATTAACAAAA+AGG | + | chr7_1:12744237-12744256 | Msa1010110:intron | 10.0% |
| !! | CATAAAATTAATTAACAAAA+AGG | + | chr7_1:12744237-12744256 | Msa1010110:intron | 10.0% |
| !!! | TTTTTAGGTTTAAACTTTTT+AGG | + | chr7_1:12744309-12744328 | Msa1010110:intron | 15.0% |
| !!! | TTTTAGGTTTAAACTTTTTA+GGG | + | chr7_1:12744310-12744329 | Msa1010110:intron | 15.0% |
| !!! | TTTTTAGGTTTAAACTTTTT+AGG | + | chr7_1:12744309-12744328 | Msa1010110:intron | 15.0% |
| !!! | TTTTAGGTTTAAACTTTTTA+GGG | + | chr7_1:12744310-12744329 | Msa1010110:intron | 15.0% |
| !! | CACGGATATTAAATATTTAA+GGG | - | chr7_1:12742980-12742999 | None:intergenic | 20.0% |
| !! | ACACGGATATTAAATATTTA+AGG | - | chr7_1:12742981-12743000 | None:intergenic | 20.0% |
| !! | TATTTAATATCCGTGTAAAA+AGG | + | chr7_1:12742985-12743004 | Msa1010110:five_prime_UTR | 20.0% |
| !! | ATGAATTAGGATTATAACAA+GGG | - | chr7_1:12743169-12743188 | None:intergenic | 20.0% |
| !! | TAAAGATAGAAAGATGAAAA+GGG | + | chr7_1:12743763-12743782 | Msa1010110:CDS | 20.0% |
| !!! | TTGTGATACTTACAATTTTT+AGG | + | chr7_1:12744294-12744313 | Msa1010110:intron | 20.0% |
| !! | CACGGATATTAAATATTTAA+GGG | - | chr7_1:12742980-12742999 | None:intergenic | 20.0% |
| !! | ACACGGATATTAAATATTTA+AGG | - | chr7_1:12742981-12743000 | None:intergenic | 20.0% |
| !! | TATTTAATATCCGTGTAAAA+AGG | + | chr7_1:12742985-12743004 | Msa1010110:five_prime_UTR | 20.0% |
| !! | ATGAATTAGGATTATAACAA+GGG | - | chr7_1:12743169-12743188 | None:intergenic | 20.0% |
| !! | TAAAGATAGAAAGATGAAAA+GGG | + | chr7_1:12743763-12743782 | Msa1010110:CDS | 20.0% |
| !!! | TTGTGATACTTACAATTTTT+AGG | + | chr7_1:12744294-12744313 | Msa1010110:intron | 20.0% |
| !! | TTTCATTTTGGACAATGATA+TGG | - | chr7_1:12742868-12742887 | None:intergenic | 25.0% |
| !!! | TGAAAGAAATTGATGATGAT+AGG | - | chr7_1:12742899-12742918 | None:intergenic | 25.0% |
| ! | AATGAACTACTTACTAGTTA+AGG | - | chr7_1:12742956-12742975 | None:intergenic | 25.0% |
| ! | GTATATAGCTATGTTCTTAT+GGG | - | chr7_1:12743038-12743057 | None:intergenic | 25.0% |
| ! | GATGAATTAGGATTATAACA+AGG | - | chr7_1:12743170-12743189 | None:intergenic | 25.0% |
| ! | CTAAAGATAGAAAGATGAAA+AGG | + | chr7_1:12743762-12743781 | Msa1010110:CDS | 25.0% |
| !! | TGATATCTTTAACTTCATTG+AGG | + | chr7_1:12743973-12743992 | Msa1010110:CDS | 25.0% |
| ! | TCATGACAATCACTATTATT+AGG | - | chr7_1:12744070-12744089 | None:intergenic | 25.0% |
| ! | TTATTATTAGCATCCCAATT+TGG | - | chr7_1:12744109-12744128 | None:intergenic | 25.0% |
| !! | TTCAAATCTTTGGAAAATCA+TGG | + | chr7_1:12744334-12744353 | Msa1010110:CDS | 25.0% |
| !! | TCAAATCTTTGGAAAATCAT+GGG | + | chr7_1:12744335-12744354 | Msa1010110:CDS | 25.0% |
| !! | AATATCAGCTAATATCGATT+TGG | - | chr7_1:12744378-12744397 | None:intergenic | 25.0% |
| !! | TACAAAGAATCGTTTTCATA+TGG | + | chr7_1:12744447-12744466 | Msa1010110:three_prime_UTR | 25.0% |
| ! | ATCAACCACACTTTAAATAT+TGG | - | chr7_1:12744635-12744654 | None:intergenic | 25.0% |
| !! | TTTCATTTTGGACAATGATA+TGG | - | chr7_1:12742868-12742887 | None:intergenic | 25.0% |
| !!! | TGAAAGAAATTGATGATGAT+AGG | - | chr7_1:12742899-12742918 | None:intergenic | 25.0% |
| ! | AATGAACTACTTACTAGTTA+AGG | - | chr7_1:12742956-12742975 | None:intergenic | 25.0% |
| ! | GTATATAGCTATGTTCTTAT+GGG | - | chr7_1:12743038-12743057 | None:intergenic | 25.0% |
| ! | GATGAATTAGGATTATAACA+AGG | - | chr7_1:12743170-12743189 | None:intergenic | 25.0% |
| ! | CTAAAGATAGAAAGATGAAA+AGG | + | chr7_1:12743762-12743781 | Msa1010110:CDS | 25.0% |
| !! | TGATATCTTTAACTTCATTG+AGG | + | chr7_1:12743973-12743992 | Msa1010110:CDS | 25.0% |
| ! | TCATGACAATCACTATTATT+AGG | - | chr7_1:12744070-12744089 | None:intergenic | 25.0% |
| ! | TTATTATTAGCATCCCAATT+TGG | - | chr7_1:12744109-12744128 | None:intergenic | 25.0% |
| !! | TTCAAATCTTTGGAAAATCA+TGG | + | chr7_1:12744334-12744353 | Msa1010110:CDS | 25.0% |
| !! | TCAAATCTTTGGAAAATCAT+GGG | + | chr7_1:12744335-12744354 | Msa1010110:CDS | 25.0% |
| !! | AATATCAGCTAATATCGATT+TGG | - | chr7_1:12744378-12744397 | None:intergenic | 25.0% |
| !! | TACAAAGAATCGTTTTCATA+TGG | + | chr7_1:12744447-12744466 | Msa1010110:three_prime_UTR | 25.0% |
| ! | ATCAACCACACTTTAAATAT+TGG | - | chr7_1:12744635-12744654 | None:intergenic | 25.0% |
| TCATATTTATCTGTGTGTGA+TGG | - | chr7_1:12742797-12742816 | None:intergenic | 30.0% | |
| TCACACACAGATAAATATGA+AGG | + | chr7_1:12742797-12742816 | Msa1010110:five_prime_UTR | 30.0% | |
| AAGGCTTATTCTTCTAACAA+TGG | + | chr7_1:12742816-12742835 | Msa1010110:five_prime_UTR | 30.0% | |
| ATGATATGGAAAGTGAGATT+TGG | - | chr7_1:12742854-12742873 | None:intergenic | 30.0% | |
| !! | AATTGATGATGATAGGTGAA+GGG | - | chr7_1:12742892-12742911 | None:intergenic | 30.0% |
| !! | AAATTGATGATGATAGGTGA+AGG | - | chr7_1:12742893-12742912 | None:intergenic | 30.0% |
| !! | AACCACTTTTATTCTCTTCT+AGG | + | chr7_1:12742919-12742938 | Msa1010110:five_prime_UTR | 30.0% |
| AACCTAGAAGAGAATAAAAG+TGG | - | chr7_1:12742924-12742943 | None:intergenic | 30.0% | |
| ! | CCTAAAAACACCTTTTTACA+CGG | - | chr7_1:12742998-12743017 | None:intergenic | 30.0% |
| GGTATATAGCTATGTTCTTA+TGG | - | chr7_1:12743039-12743058 | None:intergenic | 30.0% | |
| CACAACAAAAAAAGAACAAG+AGG | - | chr7_1:12743060-12743079 | None:intergenic | 30.0% | |
| TTGTTGTGAAACAAGAAACT+AGG | + | chr7_1:12743072-12743091 | Msa1010110:five_prime_UTR | 30.0% | |
| TGTTGTGAAACAAGAAACTA+GGG | + | chr7_1:12743073-12743092 | Msa1010110:five_prime_UTR | 30.0% | |
| GATTGATTACTTAACTCAGA+TGG | - | chr7_1:12743106-12743125 | None:intergenic | 30.0% | |
| TTAGGATTATAACAAGGGTA+AGG | - | chr7_1:12743164-12743183 | None:intergenic | 30.0% | |
| TGTGAAGAAGAAGATGAATT+AGG | - | chr7_1:12743182-12743201 | None:intergenic | 30.0% | |
| !!! | TAGAAGAAGCATTTTGATCA+GGG | - | chr7_1:12743232-12743251 | None:intergenic | 30.0% |
| !!! | TTAGAAGAAGCATTTTGATC+AGG | - | chr7_1:12743233-12743252 | None:intergenic | 30.0% |
| AAAGTTGTTGATGTTGTTGT+TGG | - | chr7_1:12743279-12743298 | None:intergenic | 30.0% | |
| GTTAGTGTATCAGGATTAAT+TGG | - | chr7_1:12743359-12743378 | None:intergenic | 30.0% | |
| ATCCTGATACACTAACAAAT+TGG | + | chr7_1:12743363-12743382 | Msa1010110:CDS | 30.0% | |
| TCCTGATACACTAACAAATT+GGG | + | chr7_1:12743364-12743383 | Msa1010110:CDS | 30.0% | |
| ATGTTGAAACAAGATCTAAG+TGG | + | chr7_1:12743407-12743426 | Msa1010110:CDS | 30.0% | |
| !! | TGTGGATTTTGATCAATTTC+AGG | - | chr7_1:12743896-12743915 | None:intergenic | 30.0% |
| ATCAATTGATGAAGGATTTG+TGG | - | chr7_1:12743914-12743933 | None:intergenic | 30.0% | |
| ! | TTTGAAGTTTCATCCTCATT+AGG | - | chr7_1:12743938-12743957 | None:intergenic | 30.0% |
| TCCAATGTTATCACCAAATT+GGG | + | chr7_1:12744093-12744112 | Msa1010110:CDS | 30.0% | |
| TCTTGATATTGCAGAAAAGT+TGG | - | chr7_1:12744158-12744177 | None:intergenic | 30.0% | |
| !!! | TTTTTAGGGCTTCAAATCTT+TGG | + | chr7_1:12744324-12744343 | Msa1010110:intron | 30.0% |
| GAATACAGACATTGTCTAAA+GGG | - | chr7_1:12744500-12744519 | None:intergenic | 30.0% | |
| AGAATACAGACATTGTCTAA+AGG | - | chr7_1:12744501-12744520 | None:intergenic | 30.0% | |
| ! | TCTAGCCAATATTTAAAGTG+TGG | + | chr7_1:12744627-12744646 | Msa1010110:three_prime_UTR | 30.0% |
| TCATATTTATCTGTGTGTGA+TGG | - | chr7_1:12742797-12742816 | None:intergenic | 30.0% | |
| TCACACACAGATAAATATGA+AGG | + | chr7_1:12742797-12742816 | Msa1010110:five_prime_UTR | 30.0% | |
| AAGGCTTATTCTTCTAACAA+TGG | + | chr7_1:12742816-12742835 | Msa1010110:five_prime_UTR | 30.0% | |
| ATGATATGGAAAGTGAGATT+TGG | - | chr7_1:12742854-12742873 | None:intergenic | 30.0% | |
| !! | AATTGATGATGATAGGTGAA+GGG | - | chr7_1:12742892-12742911 | None:intergenic | 30.0% |
| !! | AAATTGATGATGATAGGTGA+AGG | - | chr7_1:12742893-12742912 | None:intergenic | 30.0% |
| !! | AACCACTTTTATTCTCTTCT+AGG | + | chr7_1:12742919-12742938 | Msa1010110:five_prime_UTR | 30.0% |
| AACCTAGAAGAGAATAAAAG+TGG | - | chr7_1:12742924-12742943 | None:intergenic | 30.0% | |
| ! | CCTAAAAACACCTTTTTACA+CGG | - | chr7_1:12742998-12743017 | None:intergenic | 30.0% |
| GGTATATAGCTATGTTCTTA+TGG | - | chr7_1:12743039-12743058 | None:intergenic | 30.0% | |
| CACAACAAAAAAAGAACAAG+AGG | - | chr7_1:12743060-12743079 | None:intergenic | 30.0% | |
| TTGTTGTGAAACAAGAAACT+AGG | + | chr7_1:12743072-12743091 | Msa1010110:five_prime_UTR | 30.0% | |
| TGTTGTGAAACAAGAAACTA+GGG | + | chr7_1:12743073-12743092 | Msa1010110:five_prime_UTR | 30.0% | |
| GATTGATTACTTAACTCAGA+TGG | - | chr7_1:12743106-12743125 | None:intergenic | 30.0% | |
| TTAGGATTATAACAAGGGTA+AGG | - | chr7_1:12743164-12743183 | None:intergenic | 30.0% | |
| TGTGAAGAAGAAGATGAATT+AGG | - | chr7_1:12743182-12743201 | None:intergenic | 30.0% | |
| !!! | TAGAAGAAGCATTTTGATCA+GGG | - | chr7_1:12743232-12743251 | None:intergenic | 30.0% |
| !!! | TTAGAAGAAGCATTTTGATC+AGG | - | chr7_1:12743233-12743252 | None:intergenic | 30.0% |
| AAAGTTGTTGATGTTGTTGT+TGG | - | chr7_1:12743279-12743298 | None:intergenic | 30.0% | |
| GTTAGTGTATCAGGATTAAT+TGG | - | chr7_1:12743359-12743378 | None:intergenic | 30.0% | |
| ATCCTGATACACTAACAAAT+TGG | + | chr7_1:12743363-12743382 | Msa1010110:CDS | 30.0% | |
| TCCTGATACACTAACAAATT+GGG | + | chr7_1:12743364-12743383 | Msa1010110:CDS | 30.0% | |
| ATGTTGAAACAAGATCTAAG+TGG | + | chr7_1:12743407-12743426 | Msa1010110:CDS | 30.0% | |
| !! | TGTGGATTTTGATCAATTTC+AGG | - | chr7_1:12743896-12743915 | None:intergenic | 30.0% |
| ATCAATTGATGAAGGATTTG+TGG | - | chr7_1:12743914-12743933 | None:intergenic | 30.0% | |
| ! | TTTGAAGTTTCATCCTCATT+AGG | - | chr7_1:12743938-12743957 | None:intergenic | 30.0% |
| TCCAATGTTATCACCAAATT+GGG | + | chr7_1:12744093-12744112 | Msa1010110:CDS | 30.0% | |
| TCTTGATATTGCAGAAAAGT+TGG | - | chr7_1:12744158-12744177 | None:intergenic | 30.0% | |
| !!! | TTTTTAGGGCTTCAAATCTT+TGG | + | chr7_1:12744324-12744343 | Msa1010110:intron | 30.0% |
| GAATACAGACATTGTCTAAA+GGG | - | chr7_1:12744500-12744519 | None:intergenic | 30.0% | |
| AGAATACAGACATTGTCTAA+AGG | - | chr7_1:12744501-12744520 | None:intergenic | 30.0% | |
| ! | TCTAGCCAATATTTAAAGTG+TGG | + | chr7_1:12744627-12744646 | Msa1010110:three_prime_UTR | 30.0% |
| ! | TAGGTGAAGGGTTTTCATTT+TGG | - | chr7_1:12742880-12742899 | None:intergenic | 35.0% |
| !!! | CCGTGTAAAAAGGTGTTTTT+AGG | + | chr7_1:12742995-12743014 | Msa1010110:five_prime_UTR | 35.0% |
| ! | CCTAAAGAGCAATAAGTTGA+AGG | - | chr7_1:12743140-12743159 | None:intergenic | 35.0% |
| CCTTCAACTTATTGCTCTTT+AGG | + | chr7_1:12743137-12743156 | Msa1010110:CDS | 35.0% | |
| GGGTAAGAAAAGTAAAAGGA+GGG | - | chr7_1:12743211-12743230 | None:intergenic | 35.0% | |
| TCAGGGGTAAGAAAAGTAAA+AGG | - | chr7_1:12743215-12743234 | None:intergenic | 35.0% | |
| !!! | AGAAGAAGCATTTTGATCAG+GGG | - | chr7_1:12743231-12743250 | None:intergenic | 35.0% |
| TGATGAGTTGTTTGTGTGTA+GGG | - | chr7_1:12743329-12743348 | None:intergenic | 35.0% | |
| ATGATGAGTTGTTTGTGTGT+AGG | - | chr7_1:12743330-12743349 | None:intergenic | 35.0% | |
| TTCGATCTTCAAGACATGTT+AGG | + | chr7_1:12743575-12743594 | Msa1010110:CDS | 35.0% | |
| TCGATCTTCAAGACATGTTA+GGG | + | chr7_1:12743576-12743595 | Msa1010110:CDS | 35.0% | |
| ATCTTCTTCATCTCCTTCAT+CGG | - | chr7_1:12743738-12743757 | None:intergenic | 35.0% | |
| CATTAGGCATCAATTGATGA+AGG | - | chr7_1:12743922-12743941 | None:intergenic | 35.0% | |
| TCATCAATTGATGCCTAATG+AGG | + | chr7_1:12743922-12743941 | Msa1010110:CDS | 35.0% | |
| CTCCAATGTTATCACCAAAT+TGG | + | chr7_1:12744092-12744111 | Msa1010110:CDS | 35.0% | |
| ! | TCCCAATTTGGTGATAACAT+TGG | - | chr7_1:12744097-12744116 | None:intergenic | 35.0% |
| AATAACAATGATGCTGTCAC+TGG | + | chr7_1:12744127-12744146 | Msa1010110:CDS | 35.0% | |
| TCAAGAACGAATCTATCATC+AGG | + | chr7_1:12744172-12744191 | Msa1010110:CDS | 35.0% | |
| ! | AATCTTTGGAAAATCATGGG+AGG | + | chr7_1:12744338-12744357 | Msa1010110:CDS | 35.0% |
| ! | TAGGTGAAGGGTTTTCATTT+TGG | - | chr7_1:12742880-12742899 | None:intergenic | 35.0% |
| !!! | CCGTGTAAAAAGGTGTTTTT+AGG | + | chr7_1:12742995-12743014 | Msa1010110:five_prime_UTR | 35.0% |
| ! | CCTAAAGAGCAATAAGTTGA+AGG | - | chr7_1:12743140-12743159 | None:intergenic | 35.0% |
| CCTTCAACTTATTGCTCTTT+AGG | + | chr7_1:12743137-12743156 | Msa1010110:CDS | 35.0% | |
| GGGTAAGAAAAGTAAAAGGA+GGG | - | chr7_1:12743211-12743230 | None:intergenic | 35.0% | |
| TCAGGGGTAAGAAAAGTAAA+AGG | - | chr7_1:12743215-12743234 | None:intergenic | 35.0% | |
| !!! | AGAAGAAGCATTTTGATCAG+GGG | - | chr7_1:12743231-12743250 | None:intergenic | 35.0% |
| TGATGAGTTGTTTGTGTGTA+GGG | - | chr7_1:12743329-12743348 | None:intergenic | 35.0% | |
| ATGATGAGTTGTTTGTGTGT+AGG | - | chr7_1:12743330-12743349 | None:intergenic | 35.0% | |
| TTCGATCTTCAAGACATGTT+AGG | + | chr7_1:12743575-12743594 | Msa1010110:CDS | 35.0% | |
| TCGATCTTCAAGACATGTTA+GGG | + | chr7_1:12743576-12743595 | Msa1010110:CDS | 35.0% | |
| ATCTTCTTCATCTCCTTCAT+CGG | - | chr7_1:12743738-12743757 | None:intergenic | 35.0% | |
| CATTAGGCATCAATTGATGA+AGG | - | chr7_1:12743922-12743941 | None:intergenic | 35.0% | |
| TCATCAATTGATGCCTAATG+AGG | + | chr7_1:12743922-12743941 | Msa1010110:CDS | 35.0% | |
| CTCCAATGTTATCACCAAAT+TGG | + | chr7_1:12744092-12744111 | Msa1010110:CDS | 35.0% | |
| ! | TCCCAATTTGGTGATAACAT+TGG | - | chr7_1:12744097-12744116 | None:intergenic | 35.0% |
| AATAACAATGATGCTGTCAC+TGG | + | chr7_1:12744127-12744146 | Msa1010110:CDS | 35.0% | |
| TCAAGAACGAATCTATCATC+AGG | + | chr7_1:12744172-12744191 | Msa1010110:CDS | 35.0% | |
| ! | AATCTTTGGAAAATCATGGG+AGG | + | chr7_1:12744338-12744357 | Msa1010110:CDS | 35.0% |
| !! | TTATCTGTGTGTGATGGACA+AGG | - | chr7_1:12742791-12742810 | None:intergenic | 40.0% |
| GGGGTAAGAAAAGTAAAAGG+AGG | - | chr7_1:12743212-12743231 | None:intergenic | 40.0% | |
| !! | GGTGTTGTTAGTGTTGTTGT+TGG | - | chr7_1:12743258-12743277 | None:intergenic | 40.0% |
| !! | GCCCAATTTGTTAGTGTATC+AGG | - | chr7_1:12743368-12743387 | None:intergenic | 40.0% |
| ! | TTCTTAGCTGGTTTCTTGAC+AGG | - | chr7_1:12743473-12743492 | None:intergenic | 40.0% |
| AGAAACCAGCTAAGAAAGAC+AGG | + | chr7_1:12743477-12743496 | Msa1010110:CDS | 40.0% | |
| AGCAAGATTCACACATCTCA+AGG | + | chr7_1:12743503-12743522 | Msa1010110:CDS | 40.0% | |
| TCAAGGTTTGAGAGACAGAA+GGG | + | chr7_1:12743520-12743539 | Msa1010110:CDS | 40.0% | |
| AGCAAGAACAACATAGCTTC+TGG | + | chr7_1:12743671-12743690 | Msa1010110:CDS | 40.0% | |
| ! | AAAGATGAAAAGGGCACAGA+AGG | + | chr7_1:12743772-12743791 | Msa1010110:CDS | 40.0% |
| TTCGAAGACGAAGGATTCTA+GGG | + | chr7_1:12743799-12743818 | Msa1010110:CDS | 40.0% | |
| AGAAAACAAGAGCAAGAGCA+AGG | + | chr7_1:12743822-12743841 | Msa1010110:CDS | 40.0% | |
| GAAAACAAGAGCAAGAGCAA+GGG | + | chr7_1:12743823-12743842 | Msa1010110:CDS | 40.0% | |
| !! | CAGCTAATATCGATTTGGAC+TGG | - | chr7_1:12744373-12744392 | None:intergenic | 40.0% |
| ! | TTTTGCTCAAAGATCTGCCA+AGG | + | chr7_1:12744556-12744575 | Msa1010110:three_prime_UTR | 40.0% |
| TTTGCTCAAAGATCTGCCAA+GGG | + | chr7_1:12744557-12744576 | Msa1010110:three_prime_UTR | 40.0% | |
| ! | ATGTGACAGTTTGGCTTCAA+AGG | + | chr7_1:12744581-12744600 | Msa1010110:three_prime_UTR | 40.0% |
| !! | TTATCTGTGTGTGATGGACA+AGG | - | chr7_1:12742791-12742810 | None:intergenic | 40.0% |
| GGGGTAAGAAAAGTAAAAGG+AGG | - | chr7_1:12743212-12743231 | None:intergenic | 40.0% | |
| !! | GGTGTTGTTAGTGTTGTTGT+TGG | - | chr7_1:12743258-12743277 | None:intergenic | 40.0% |
| !! | GCCCAATTTGTTAGTGTATC+AGG | - | chr7_1:12743368-12743387 | None:intergenic | 40.0% |
| ! | TTCTTAGCTGGTTTCTTGAC+AGG | - | chr7_1:12743473-12743492 | None:intergenic | 40.0% |
| AGAAACCAGCTAAGAAAGAC+AGG | + | chr7_1:12743477-12743496 | Msa1010110:CDS | 40.0% | |
| AGCAAGATTCACACATCTCA+AGG | + | chr7_1:12743503-12743522 | Msa1010110:CDS | 40.0% | |
| TCAAGGTTTGAGAGACAGAA+GGG | + | chr7_1:12743520-12743539 | Msa1010110:CDS | 40.0% | |
| AGCAAGAACAACATAGCTTC+TGG | + | chr7_1:12743671-12743690 | Msa1010110:CDS | 40.0% | |
| ! | AAAGATGAAAAGGGCACAGA+AGG | + | chr7_1:12743772-12743791 | Msa1010110:CDS | 40.0% |
| TTCGAAGACGAAGGATTCTA+GGG | + | chr7_1:12743799-12743818 | Msa1010110:CDS | 40.0% | |
| AGAAAACAAGAGCAAGAGCA+AGG | + | chr7_1:12743822-12743841 | Msa1010110:CDS | 40.0% | |
| GAAAACAAGAGCAAGAGCAA+GGG | + | chr7_1:12743823-12743842 | Msa1010110:CDS | 40.0% | |
| !! | CAGCTAATATCGATTTGGAC+TGG | - | chr7_1:12744373-12744392 | None:intergenic | 40.0% |
| ! | TTTTGCTCAAAGATCTGCCA+AGG | + | chr7_1:12744556-12744575 | Msa1010110:three_prime_UTR | 40.0% |
| TTTGCTCAAAGATCTGCCAA+GGG | + | chr7_1:12744557-12744576 | Msa1010110:three_prime_UTR | 40.0% | |
| ! | ATGTGACAGTTTGGCTTCAA+AGG | + | chr7_1:12744581-12744600 | Msa1010110:three_prime_UTR | 40.0% |
| TAGGGAACAGAAATAGCTGC+TGG | - | chr7_1:12743311-12743330 | None:intergenic | 45.0% | |
| CTATGCCTGTCTTTCTTAGC+TGG | - | chr7_1:12743485-12743504 | None:intergenic | 45.0% | |
| CTCAAGGTTTGAGAGACAGA+AGG | + | chr7_1:12743519-12743538 | Msa1010110:CDS | 45.0% | |
| AAGCCAGCAACACACTTGAA+TGG | + | chr7_1:12743606-12743625 | Msa1010110:CDS | 45.0% | |
| TCTTCTTCGTCTTCCGATGA+AGG | + | chr7_1:12743722-12743741 | Msa1010110:CDS | 45.0% | |
| GAAGGAATCTTCGAAGACGA+AGG | + | chr7_1:12743790-12743809 | Msa1010110:CDS | 45.0% | |
| CTTCGAAGACGAAGGATTCT+AGG | + | chr7_1:12743798-12743817 | Msa1010110:CDS | 45.0% | |
| TAGGGAACAGAAATAGCTGC+TGG | - | chr7_1:12743311-12743330 | None:intergenic | 45.0% | |
| CTATGCCTGTCTTTCTTAGC+TGG | - | chr7_1:12743485-12743504 | None:intergenic | 45.0% | |
| CTCAAGGTTTGAGAGACAGA+AGG | + | chr7_1:12743519-12743538 | Msa1010110:CDS | 45.0% | |
| AAGCCAGCAACACACTTGAA+TGG | + | chr7_1:12743606-12743625 | Msa1010110:CDS | 45.0% | |
| TCTTCTTCGTCTTCCGATGA+AGG | + | chr7_1:12743722-12743741 | Msa1010110:CDS | 45.0% | |
| GAAGGAATCTTCGAAGACGA+AGG | + | chr7_1:12743790-12743809 | Msa1010110:CDS | 45.0% | |
| CTTCGAAGACGAAGGATTCT+AGG | + | chr7_1:12743798-12743817 | Msa1010110:CDS | 45.0% | |
| !! | GTGTGATGGACAAGGCTCAT+GGG | - | chr7_1:12742783-12742802 | None:intergenic | 50.0% |
| !! | TGTGTGATGGACAAGGCTCA+TGG | - | chr7_1:12742784-12742803 | None:intergenic | 50.0% |
| GAGCCATTCAAGTGTGTTGC+TGG | - | chr7_1:12743612-12743631 | None:intergenic | 50.0% | |
| !! | GTGTGATGGACAAGGCTCAT+GGG | - | chr7_1:12742783-12742802 | None:intergenic | 50.0% |
| !! | TGTGTGATGGACAAGGCTCA+TGG | - | chr7_1:12742784-12742803 | None:intergenic | 50.0% |
| GAGCCATTCAAGTGTGTTGC+TGG | - | chr7_1:12743612-12743631 | None:intergenic | 50.0% | |
| GATGGACAAGGCTCATGGGT+TGG | - | chr7_1:12742779-12742798 | None:intergenic | 55.0% | |
| GACTTTCCATCGAGATCGCG+AGG | + | chr7_1:12743546-12743565 | Msa1010110:CDS | 55.0% | |
| GAACTTCCTCGCGATCTCGA+TGG | - | chr7_1:12743555-12743574 | None:intergenic | 55.0% | |
| ! | GCCAAGGGCATGTGACAGTT+TGG | + | chr7_1:12744572-12744591 | Msa1010110:three_prime_UTR | 55.0% |
| GCCAAACTGTCACATGCCCT+TGG | - | chr7_1:12744576-12744595 | None:intergenic | 55.0% | |
| GATGGACAAGGCTCATGGGT+TGG | - | chr7_1:12742779-12742798 | None:intergenic | 55.0% | |
| GACTTTCCATCGAGATCGCG+AGG | + | chr7_1:12743546-12743565 | Msa1010110:CDS | 55.0% | |
| GAACTTCCTCGCGATCTCGA+TGG | - | chr7_1:12743555-12743574 | None:intergenic | 55.0% | |
| ! | GCCAAGGGCATGTGACAGTT+TGG | + | chr7_1:12744572-12744591 | Msa1010110:three_prime_UTR | 55.0% |
| GCCAAACTGTCACATGCCCT+TGG | - | chr7_1:12744576-12744595 | None:intergenic | 55.0% | |
| GCTTCTGGCGATGACGACGA+TGG | + | chr7_1:12743686-12743705 | Msa1010110:CDS | 60.0% | |
| GCTTCTGGCGATGACGACGA+TGG | + | chr7_1:12743686-12743705 | Msa1010110:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 12742775 | 12744680 | 12742775 | ID=Msa1010110;Name=Msa1010110 |
| chr7_1 | mRNA | 12742775 | 12744680 | 12742775 | ID=Msa1010110-mRNA-1;Parent=Msa1010110;Name=Msa1010110-mRNA-1;_AED=0.00;_eAED=0.00;_QI=356|1|1|1|1|1|2|291|373 |
| chr7_1 | exon | 12742775 | 12744193 | 12742775 | ID=Msa1010110-mRNA-1:exon:3266;Parent=Msa1010110-mRNA-1 |
| chr7_1 | exon | 12744331 | 12744680 | 12744331 | ID=Msa1010110-mRNA-1:exon:3267;Parent=Msa1010110-mRNA-1 |
| chr7_1 | five_prime_UTR | 12742775 | 12743130 | 12742775 | ID=Msa1010110-mRNA-1:five_prime_utr;Parent=Msa1010110-mRNA-1 |
| chr7_1 | CDS | 12743131 | 12744193 | 12743131 | ID=Msa1010110-mRNA-1:cds;Parent=Msa1010110-mRNA-1 |
| chr7_1 | CDS | 12744331 | 12744389 | 12744331 | ID=Msa1010110-mRNA-1:cds;Parent=Msa1010110-mRNA-1 |
| chr7_1 | three_prime_UTR | 12744390 | 12744680 | 12744390 | ID=Msa1010110-mRNA-1:three_prime_utr;Parent=Msa1010110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
