Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1228980 | KEH17929.1 | 59.200 | 125 | 33 | 1 | 70 | 194 | 21 | 127 | 4.78e-34 | 129 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1228980 | A0A072TK90 | 59.200 | 125 | 33 | 1 | 70 | 194 | 21 | 127 | 2.28e-34 | 129 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0130570 | Msa1228980 | 0.813523 | 2.451176e-51 | -8.615850e-47 |
| Msa0141600 | Msa1228980 | 0.804052 | 2.599158e-49 | -8.615850e-47 |
| Msa0147560 | Msa1228980 | 0.802830 | 4.657315e-49 | -8.615850e-47 |
| Msa0203030 | Msa1228980 | 0.802931 | 4.438826e-49 | -8.615850e-47 |
| Msa0219190 | Msa1228980 | 0.843529 | 1.324726e-58 | -8.615850e-47 |
| Msa1228980 | Msa1307190 | 0.806650 | 7.420105e-50 | -8.615850e-47 |
| Msa1228980 | Msa1420060 | 0.855269 | 7.064706e-62 | -8.615850e-47 |
| Msa0413930 | Msa1228980 | 0.818925 | 1.520102e-52 | -8.615850e-47 |
| Msa0436500 | Msa1228980 | 0.818894 | 1.544872e-52 | -8.615850e-47 |
| Msa1037920 | Msa1228980 | 0.802012 | 6.865595e-49 | -8.615850e-47 |
| Msa1041530 | Msa1228980 | 0.806605 | 7.585082e-50 | -8.615850e-47 |
| Msa1081570 | Msa1228980 | 0.820226 | 7.672241e-53 | -8.615850e-47 |
| Msa1097560 | Msa1228980 | 0.814661 | 1.374978e-51 | -8.615850e-47 |
| Msa0298240 | Msa1228980 | 0.820533 | 6.522104e-53 | -8.615850e-47 |
| Msa0337850 | Msa1228980 | 0.804095 | 2.546880e-49 | -8.615850e-47 |
| Msa1127140 | Msa1228980 | 0.820382 | 7.063846e-53 | -8.615850e-47 |
| Msa1129980 | Msa1228980 | 0.800552 | 1.366359e-48 | -8.615850e-47 |
| Msa1166400 | Msa1228980 | 0.823996 | 1.025132e-53 | -8.615850e-47 |
| Msa1176160 | Msa1228980 | 0.817238 | 3.658297e-52 | -8.615850e-47 |
| Msa0862100 | Msa1228980 | 0.801355 | 9.365364e-49 | -8.615850e-47 |
| Msa0867350 | Msa1228980 | 0.806346 | 8.602977e-50 | -8.615850e-47 |
| Msa0872310 | Msa1228980 | 0.805287 | 1.435991e-49 | -8.615850e-47 |
| Msa0885060 | Msa1228980 | 0.816718 | 4.786081e-52 | -8.615850e-47 |
| Msa0898730 | Msa1228980 | 0.806465 | 8.116983e-50 | -8.615850e-47 |
| Msa0911990 | Msa1228980 | 0.805114 | 1.560830e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1228980 | MtrunA17_Chr1g0201211 | 32.083 | 240 | 101 | 5 | 16 | 193 | 28 | 267 | 2.08e-24 | 97.4 |
| Msa1228980 | MtrunA17_Chr1g0179031 | 48.031 | 127 | 61 | 4 | 70 | 193 | 60 | 184 | 8.29e-23 | 90.9 |
| Msa1228980 | MtrunA17_Chr1g0200761 | 58.824 | 51 | 21 | 0 | 16 | 66 | 28 | 78 | 2.83e-13 | 65.5 |
| Msa1228980 | MtrunA17_Chr1g0200771 | 53.226 | 62 | 29 | 0 | 133 | 194 | 2 | 63 | 2.07e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 19 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGAGATAACAAATTTATT+TGG | 0.290046 | 8_2:-4617340 | Msa1228980:CDS |
| ATGTCACTGACAGTATATTT+TGG | 0.316255 | 8_2:-4617393 | Msa1228980:CDS |
| TTTGTTTATGTTGAGATAAC+AGG | 0.317818 | 8_2:-4619145 | Msa1228980:CDS |
| ATCTTACAATACCCACTTGT+TGG | 0.377583 | 8_2:-4619028 | Msa1228980:intron |
| CTTGATTACCTAAAACTTGT+TGG | 0.379055 | 8_2:+4617027 | None:intergenic |
| TGTGAAAATGTGGGATGATT+TGG | 0.387201 | 8_2:-4617083 | Msa1228980:CDS |
| ATGTGTTGTGTGTGTGTTGT+TGG | 0.388357 | 8_2:-4617176 | Msa1228980:CDS |
| TTCAACAGATGAAAGCTATA+AGG | 0.389969 | 8_2:-4617060 | Msa1228980:CDS |
| ACGGTTATCACTCATCTCAT+TGG | 0.425962 | 8_2:-4617268 | Msa1228980:CDS |
| ATAGCTTGCACAAGACAAAC+TGG | 0.468907 | 8_2:+4617217 | None:intergenic |
| AGTTTGTCTTGTGCAAGCTA+TGG | 0.470022 | 8_2:-4617215 | Msa1228980:CDS |
| AACTGGTGGGTCTTCTAATA+CGG | 0.498564 | 8_2:+4617234 | None:intergenic |
| TGACTGTTGTTGTGAAAATG+TGG | 0.546370 | 8_2:-4617093 | Msa1228980:CDS |
| GACTGTTGTTGTGAAAATGT+GGG | 0.613478 | 8_2:-4617092 | Msa1228980:CDS |
| TATTTCAGTAGACCAACAAG+TGG | 0.672906 | 8_2:+4619016 | None:intergenic |
| CTTGCACAAGACAAACTGGT+GGG | 0.674912 | 8_2:+4617221 | None:intergenic |
| GCTTGCACAAGACAAACTGG+TGG | 0.681408 | 8_2:+4617220 | None:intergenic |
| AAATTTATTTGGTGACAACG+TGG | 0.682097 | 8_2:-4617329 | Msa1228980:CDS |
| ATTTCAGTAGACCAACAAGT+GGG | 0.729149 | 8_2:+4619017 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATATTAATAAAAATAA+TGG | - | chr8_2:4617908-4617927 | Msa1228980:intron | 0.0% |
| !! | AAAAATATTAATAAAAATAA+TGG | - | chr8_2:4617908-4617927 | Msa1228980:intron | 0.0% |
| !!! | CATTTATTTAATTTAAAATC+TGG | + | chr8_2:4618469-4618488 | None:intergenic | 10.0% |
| !! | TAAAAAAATGAAATAAATTC+TGG | - | chr8_2:4617723-4617742 | Msa1228980:intron | 10.0% |
| !! | AAAAAAATGAAATAAAATCT+TGG | - | chr8_2:4617800-4617819 | Msa1228980:intron | 10.0% |
| !!! | TTCAAATTTTTTAAAAAATC+TGG | - | chr8_2:4618342-4618361 | Msa1228980:intron | 10.0% |
| !!! | TAATTTAAAAATTGATTTTC+TGG | - | chr8_2:4618437-4618456 | Msa1228980:intron | 10.0% |
| !!! | CATTTATTTAATTTAAAATC+TGG | - | chr8_2:4618469-4618488 | Msa1228980:intron | 10.0% |
| !!! | CATTTATTTAATTTAAAATC+TGG | + | chr8_2:4618469-4618488 | None:intergenic | 10.0% |
| !! | TAAAAAAATGAAATAAATTC+TGG | - | chr8_2:4617723-4617742 | Msa1228980:intron | 10.0% |
| !! | AAAAAAATGAAATAAAATCT+TGG | - | chr8_2:4617800-4617819 | Msa1228980:intron | 10.0% |
| !!! | TTCAAATTTTTTAAAAAATC+TGG | - | chr8_2:4618342-4618361 | Msa1228980:intron | 10.0% |
| !!! | TAATTTAAAAATTGATTTTC+TGG | - | chr8_2:4618437-4618456 | Msa1228980:intron | 10.0% |
| !!! | CATTTATTTAATTTAAAATC+TGG | - | chr8_2:4618469-4618488 | Msa1228980:intron | 10.0% |
| !!! | CAATTTAAAAATTGATTTTC+TGG | + | chr8_2:4617673-4617692 | None:intergenic | 15.0% |
| !! | AAAAATTTCACAAAAATTCA+CGG | - | chr8_2:4617861-4617880 | Msa1228980:intron | 15.0% |
| !! | ATGGAAAAATATTTAAATTC+TGG | - | chr8_2:4617927-4617946 | Msa1228980:intron | 15.0% |
| !! | AAAAATTTCACAAAAATTCA+TGG | - | chr8_2:4617861-4617880 | Msa1228980:intron | 15.0% |
| !!! | GGAATTTTTTTAAAAAAATC+TGG | + | chr8_2:4618313-4618332 | None:intergenic | 15.0% |
| !!! | AAGTTTTAAAACTACAATTT+TGG | + | chr8_2:4618687-4618706 | None:intergenic | 15.0% |
| !!! | AAATTGTAGTTTTAAAACTT+AGG | - | chr8_2:4618687-4618706 | Msa1228980:intron | 15.0% |
| !!! | AATTGTAGTTTTAAAACTTA+GGG | - | chr8_2:4618688-4618707 | Msa1228980:intron | 15.0% |
| !!! | GAGATTTTTGTTATTTTTTA+CGG | - | chr8_2:4618960-4618979 | Msa1228980:intron | 15.0% |
| !!! | CAATTTAAAAATTGATTTTC+TGG | + | chr8_2:4617673-4617692 | None:intergenic | 15.0% |
| !! | AAAAATTTCACAAAAATTCA+CGG | - | chr8_2:4617861-4617880 | Msa1228980:intron | 15.0% |
| !! | ATGGAAAAATATTTAAATTC+TGG | - | chr8_2:4617927-4617946 | Msa1228980:intron | 15.0% |
| !! | AAAAATTTCACAAAAATTCA+TGG | - | chr8_2:4617861-4617880 | Msa1228980:intron | 15.0% |
| !!! | GGAATTTTTTTAAAAAAATC+TGG | + | chr8_2:4618313-4618332 | None:intergenic | 15.0% |
| !!! | AAGTTTTAAAACTACAATTT+TGG | + | chr8_2:4618687-4618706 | None:intergenic | 15.0% |
| !!! | AAATTGTAGTTTTAAAACTT+AGG | - | chr8_2:4618687-4618706 | Msa1228980:intron | 15.0% |
| !!! | AATTGTAGTTTTAAAACTTA+GGG | - | chr8_2:4618688-4618707 | Msa1228980:intron | 15.0% |
| !!! | GAGATTTTTGTTATTTTTTA+CGG | - | chr8_2:4618960-4618979 | Msa1228980:intron | 15.0% |
| !!! | ACAAAATTACTCTACTTTTT+TGG | - | chr8_2:4617067-4617086 | Msa1228980:CDS | 20.0% |
| !!! | TTACTGCTGTAATTTTTTTT+AGG | - | chr8_2:4617316-4617335 | Msa1228980:CDS | 20.0% |
| !!! | AAGTTTGAAAACTACAATTT+TGG | - | chr8_2:4617393-4617412 | Msa1228980:CDS | 20.0% |
| !! | TAATTAATTAATTACACACG+TGG | + | chr8_2:4618586-4618605 | None:intergenic | 20.0% |
| !!! | TTCTGGAAAAATGAAAAATA+AGG | - | chr8_2:4617740-4617759 | Msa1228980:intron | 20.0% |
| !! | TTGAAAATTTGACATTCTAA+AGG | + | chr8_2:4618231-4618250 | None:intergenic | 20.0% |
| !!! | GAAAATTCTGTAAAAGATTT+TGG | - | chr8_2:4618256-4618275 | Msa1228980:intron | 20.0% |
| !! | TAATTAATTAATTACACACG+TGG | - | chr8_2:4618586-4618605 | Msa1228980:intron | 20.0% |
| !!! | ATTGTAGTTTTAAAACTTAG+GGG | - | chr8_2:4618689-4618708 | Msa1228980:intron | 20.0% |
| !!! | ACAAAATTACTCTACTTTTT+TGG | - | chr8_2:4617067-4617086 | Msa1228980:CDS | 20.0% |
| !!! | TTACTGCTGTAATTTTTTTT+AGG | - | chr8_2:4617316-4617335 | Msa1228980:CDS | 20.0% |
| !!! | AAGTTTGAAAACTACAATTT+TGG | - | chr8_2:4617393-4617412 | Msa1228980:CDS | 20.0% |
| !! | TAATTAATTAATTACACACG+TGG | + | chr8_2:4618586-4618605 | None:intergenic | 20.0% |
| !!! | TTCTGGAAAAATGAAAAATA+AGG | - | chr8_2:4617740-4617759 | Msa1228980:intron | 20.0% |
| !! | TTGAAAATTTGACATTCTAA+AGG | + | chr8_2:4618231-4618250 | None:intergenic | 20.0% |
| !!! | GAAAATTCTGTAAAAGATTT+TGG | - | chr8_2:4618256-4618275 | Msa1228980:intron | 20.0% |
| !! | TAATTAATTAATTACACACG+TGG | - | chr8_2:4618586-4618605 | Msa1228980:intron | 20.0% |
| !!! | ATTGTAGTTTTAAAACTTAG+GGG | - | chr8_2:4618689-4618708 | Msa1228980:intron | 20.0% |
| ! | TTTGTTTATGTTGAGATAAC+AGG | - | chr8_2:4617102-4617121 | Msa1228980:CDS | 25.0% |
| !! | AGGTTTTGCTGATAATTTTA+TGG | - | chr8_2:4617122-4617141 | Msa1228980:CDS | 25.0% |
| ! | ACTGAAATATGTGATTATCT+TGG | - | chr8_2:4617245-4617264 | Msa1228980:CDS | 25.0% |
| ! | AATAAAACACATATAGCACA+TGG | + | chr8_2:4617276-4617295 | None:intergenic | 25.0% |
| !!! | GCAACTTTTTTAAAGATAAG+GGG | + | chr8_2:4617359-4617378 | None:intergenic | 25.0% |
| !!! | CGCAACTTTTTTAAAGATAA+GGG | + | chr8_2:4617360-4617379 | None:intergenic | 25.0% |
| !!! | TCGCAACTTTTTTAAAGATA+AGG | + | chr8_2:4617361-4617380 | None:intergenic | 25.0% |
| !!! | CTTTAAAAAAGTTGCGATTT+TGG | - | chr8_2:4617364-4617383 | Msa1228980:CDS | 25.0% |
| !! | TTGTAGTTTTCAAACTTAGA+GGG | + | chr8_2:4617390-4617409 | None:intergenic | 25.0% |
| !! | ATTGTAGTTTTCAAACTTAG+AGG | + | chr8_2:4617391-4617410 | None:intergenic | 25.0% |
| !!! | TTTTTCGAATAAGTGATTCT+TGG | + | chr8_2:4617893-4617912 | None:intergenic | 25.0% |
| !!! | TTTTTCGAATAAGTGATTCT+TGG | + | chr8_2:4617893-4617912 | None:intergenic | 25.0% |
| ! | TATTCGAAAAAGTAATGTCA+TGG | - | chr8_2:4618107-4618126 | Msa1228980:intron | 25.0% |
| ! | TGGTACATATTTCTTCTTTA+GGG | + | chr8_2:4618146-4618165 | None:intergenic | 25.0% |
| ! | TTGGTACATATTTCTTCTTT+AGG | + | chr8_2:4618147-4618166 | None:intergenic | 25.0% |
| ! | AGAAATATGTACCAAATTTG+TGG | - | chr8_2:4618152-4618171 | Msa1228980:intron | 25.0% |
| ! | AATATGACCAAATATGCAAA+GGG | - | chr8_2:4618645-4618664 | Msa1228980:intron | 25.0% |
| !!! | TTGTAGTTTTAAAACTTAGG+GGG | - | chr8_2:4618690-4618709 | Msa1228980:intron | 25.0% |
| ! | GTGGAGATAACAAATTTATT+TGG | - | chr8_2:4618907-4618926 | Msa1228980:intron | 25.0% |
| ! | TTTGTTTATGTTGAGATAAC+AGG | - | chr8_2:4617102-4617121 | Msa1228980:CDS | 25.0% |
| !! | AGGTTTTGCTGATAATTTTA+TGG | - | chr8_2:4617122-4617141 | Msa1228980:CDS | 25.0% |
| ! | ACTGAAATATGTGATTATCT+TGG | - | chr8_2:4617245-4617264 | Msa1228980:CDS | 25.0% |
| ! | AATAAAACACATATAGCACA+TGG | + | chr8_2:4617276-4617295 | None:intergenic | 25.0% |
| !!! | GCAACTTTTTTAAAGATAAG+GGG | + | chr8_2:4617359-4617378 | None:intergenic | 25.0% |
| !!! | CGCAACTTTTTTAAAGATAA+GGG | + | chr8_2:4617360-4617379 | None:intergenic | 25.0% |
| !!! | TCGCAACTTTTTTAAAGATA+AGG | + | chr8_2:4617361-4617380 | None:intergenic | 25.0% |
| !!! | CTTTAAAAAAGTTGCGATTT+TGG | - | chr8_2:4617364-4617383 | Msa1228980:CDS | 25.0% |
| !! | TTGTAGTTTTCAAACTTAGA+GGG | + | chr8_2:4617390-4617409 | None:intergenic | 25.0% |
| !! | ATTGTAGTTTTCAAACTTAG+AGG | + | chr8_2:4617391-4617410 | None:intergenic | 25.0% |
| !!! | TTTTTCGAATAAGTGATTCT+TGG | + | chr8_2:4617893-4617912 | None:intergenic | 25.0% |
| !!! | TTTTTCGAATAAGTGATTCT+TGG | + | chr8_2:4617893-4617912 | None:intergenic | 25.0% |
| ! | TATTCGAAAAAGTAATGTCA+TGG | - | chr8_2:4618107-4618126 | Msa1228980:intron | 25.0% |
| ! | TGGTACATATTTCTTCTTTA+GGG | + | chr8_2:4618146-4618165 | None:intergenic | 25.0% |
| ! | TTGGTACATATTTCTTCTTT+AGG | + | chr8_2:4618147-4618166 | None:intergenic | 25.0% |
| ! | AGAAATATGTACCAAATTTG+TGG | - | chr8_2:4618152-4618171 | Msa1228980:intron | 25.0% |
| ! | AATATGACCAAATATGCAAA+GGG | - | chr8_2:4618645-4618664 | Msa1228980:intron | 25.0% |
| !!! | TTGTAGTTTTAAAACTTAGG+GGG | - | chr8_2:4618690-4618709 | Msa1228980:intron | 25.0% |
| ! | GTGGAGATAACAAATTTATT+TGG | - | chr8_2:4618907-4618926 | Msa1228980:intron | 25.0% |
| ! | TTTTAGTCCCTTTGCATATT+TGG | - | chr8_2:4617425-4617444 | Msa1228980:intron | 30.0% |
| AAAAGGACCAAATATGCAAA+GGG | + | chr8_2:4617435-4617454 | None:intergenic | 30.0% | |
| CTTTGCATATTTGGTCATAT+TGG | + | chr8_2:4618646-4618665 | None:intergenic | 30.0% | |
| CAATATGACCAAATATGCAA+AGG | - | chr8_2:4618644-4618663 | Msa1228980:intron | 30.0% | |
| ATATGACCAAATATGCAAAG+GGG | - | chr8_2:4618646-4618665 | Msa1228980:intron | 30.0% | |
| ! | CTTTCAAAAAGTTGCGATTT+TGG | + | chr8_2:4618716-4618735 | None:intergenic | 30.0% |
| !! | ATCGCAACTTTTTGAAAGAT+AGG | - | chr8_2:4618718-4618737 | Msa1228980:intron | 30.0% |
| !! | TCGCAACTTTTTGAAAGATA+GGG | - | chr8_2:4618719-4618738 | Msa1228980:intron | 30.0% |
| ! | ATGTCACTGACAGTATATTT+TGG | - | chr8_2:4618854-4618873 | Msa1228980:intron | 30.0% |
| ! | AAATTTATTTGGTGACAACG+TGG | - | chr8_2:4618918-4618937 | Msa1228980:intron | 30.0% |
| ! | CTGTAATTGTTTTCATCAGT+TGG | - | chr8_2:4619118-4619137 | Msa1228980:CDS | 30.0% |
| ! | AATTGTTTTCATCAGTTGGA+TGG | - | chr8_2:4619122-4619141 | Msa1228980:CDS | 30.0% |
| TTCAACAGATGAAAGCTATA+AGG | - | chr8_2:4619187-4619206 | Msa1228980:CDS | 30.0% | |
| ! | TTTTAGTCCCTTTGCATATT+TGG | - | chr8_2:4617425-4617444 | Msa1228980:intron | 30.0% |
| AAAAGGACCAAATATGCAAA+GGG | + | chr8_2:4617435-4617454 | None:intergenic | 30.0% | |
| CTTTGCATATTTGGTCATAT+TGG | + | chr8_2:4618646-4618665 | None:intergenic | 30.0% | |
| CAATATGACCAAATATGCAA+AGG | - | chr8_2:4618644-4618663 | Msa1228980:intron | 30.0% | |
| ATATGACCAAATATGCAAAG+GGG | - | chr8_2:4618646-4618665 | Msa1228980:intron | 30.0% | |
| ! | CTTTCAAAAAGTTGCGATTT+TGG | + | chr8_2:4618716-4618735 | None:intergenic | 30.0% |
| !! | ATCGCAACTTTTTGAAAGAT+AGG | - | chr8_2:4618718-4618737 | Msa1228980:intron | 30.0% |
| !! | TCGCAACTTTTTGAAAGATA+GGG | - | chr8_2:4618719-4618738 | Msa1228980:intron | 30.0% |
| ! | ATGTCACTGACAGTATATTT+TGG | - | chr8_2:4618854-4618873 | Msa1228980:intron | 30.0% |
| ! | AAATTTATTTGGTGACAACG+TGG | - | chr8_2:4618918-4618937 | Msa1228980:intron | 30.0% |
| ! | CTGTAATTGTTTTCATCAGT+TGG | - | chr8_2:4619118-4619137 | Msa1228980:CDS | 30.0% |
| ! | AATTGTTTTCATCAGTTGGA+TGG | - | chr8_2:4619122-4619141 | Msa1228980:CDS | 30.0% |
| TTCAACAGATGAAAGCTATA+AGG | - | chr8_2:4619187-4619206 | Msa1228980:CDS | 30.0% | |
| !!! | TCTACTTTTTTGGACACTCA+TGG | - | chr8_2:4617077-4617096 | Msa1228980:CDS | 35.0% |
| ATCTTACAATACCCACTTGT+TGG | - | chr8_2:4617219-4617238 | Msa1228980:CDS | 35.0% | |
| ATTTCAGTAGACCAACAAGT+GGG | + | chr8_2:4617233-4617252 | None:intergenic | 35.0% | |
| TATTTCAGTAGACCAACAAG+TGG | + | chr8_2:4617234-4617253 | None:intergenic | 35.0% | |
| TGCAAAGGGACTAAAACATA+GGG | + | chr8_2:4617421-4617440 | None:intergenic | 35.0% | |
| ATGCAAAGGGACTAAAACAT+AGG | + | chr8_2:4617422-4617441 | None:intergenic | 35.0% | |
| CAAAAGGACCAAATATGCAA+AGG | + | chr8_2:4617436-4617455 | None:intergenic | 35.0% | |
| ! | CTTTGCATATTTGGTCCTTT+TGG | - | chr8_2:4617434-4617453 | Msa1228980:intron | 35.0% |
| CTTGGTCAAAATTGACCAAA+AGG | + | chr8_2:4617452-4617471 | None:intergenic | 35.0% | |
| ATACAACTTGGCCACAAATT+TGG | + | chr8_2:4618166-4618185 | None:intergenic | 35.0% | |
| ! | TTTTAGCCCCTTTGCATATT+TGG | + | chr8_2:4618655-4618674 | None:intergenic | 35.0% |
| !! | CGCAACTTTTTGAAAGATAG+GGG | - | chr8_2:4618720-4618739 | Msa1228980:intron | 35.0% |
| !! | GCAACTTTTTGAAAGATAGG+GGG | - | chr8_2:4618721-4618740 | Msa1228980:intron | 35.0% |
| ACAAGACTAAAGTGCAACTT+TGG | + | chr8_2:4618747-4618766 | None:intergenic | 35.0% | |
| GATTATTGCTCTCTCTACAA+TGG | - | chr8_2:4618779-4618798 | Msa1228980:intron | 35.0% | |
| AGAATAGTCACACAAGTTGT+AGG | + | chr8_2:4618822-4618841 | None:intergenic | 35.0% | |
| AACTTGTGTGACTATTCTCA+AGG | - | chr8_2:4618824-4618843 | Msa1228980:intron | 35.0% | |
| !!! | ACTCATCTTTTTTGTTGCTG+TGG | - | chr8_2:4618888-4618907 | Msa1228980:intron | 35.0% |
| TGACTGTTGTTGTGAAAATG+TGG | - | chr8_2:4619154-4619173 | Msa1228980:CDS | 35.0% | |
| GACTGTTGTTGTGAAAATGT+GGG | - | chr8_2:4619155-4619174 | Msa1228980:CDS | 35.0% | |
| TGTGAAAATGTGGGATGATT+TGG | - | chr8_2:4619164-4619183 | Msa1228980:CDS | 35.0% | |
| !!! | TCTACTTTTTTGGACACTCA+TGG | - | chr8_2:4617077-4617096 | Msa1228980:CDS | 35.0% |
| ATCTTACAATACCCACTTGT+TGG | - | chr8_2:4617219-4617238 | Msa1228980:CDS | 35.0% | |
| ATTTCAGTAGACCAACAAGT+GGG | + | chr8_2:4617233-4617252 | None:intergenic | 35.0% | |
| TATTTCAGTAGACCAACAAG+TGG | + | chr8_2:4617234-4617253 | None:intergenic | 35.0% | |
| TGCAAAGGGACTAAAACATA+GGG | + | chr8_2:4617421-4617440 | None:intergenic | 35.0% | |
| ATGCAAAGGGACTAAAACAT+AGG | + | chr8_2:4617422-4617441 | None:intergenic | 35.0% | |
| CAAAAGGACCAAATATGCAA+AGG | + | chr8_2:4617436-4617455 | None:intergenic | 35.0% | |
| ! | CTTTGCATATTTGGTCCTTT+TGG | - | chr8_2:4617434-4617453 | Msa1228980:intron | 35.0% |
| CTTGGTCAAAATTGACCAAA+AGG | + | chr8_2:4617452-4617471 | None:intergenic | 35.0% | |
| ATACAACTTGGCCACAAATT+TGG | + | chr8_2:4618166-4618185 | None:intergenic | 35.0% | |
| ! | TTTTAGCCCCTTTGCATATT+TGG | + | chr8_2:4618655-4618674 | None:intergenic | 35.0% |
| !! | CGCAACTTTTTGAAAGATAG+GGG | - | chr8_2:4618720-4618739 | Msa1228980:intron | 35.0% |
| !! | GCAACTTTTTGAAAGATAGG+GGG | - | chr8_2:4618721-4618740 | Msa1228980:intron | 35.0% |
| ACAAGACTAAAGTGCAACTT+TGG | + | chr8_2:4618747-4618766 | None:intergenic | 35.0% | |
| GATTATTGCTCTCTCTACAA+TGG | - | chr8_2:4618779-4618798 | Msa1228980:intron | 35.0% | |
| AGAATAGTCACACAAGTTGT+AGG | + | chr8_2:4618822-4618841 | None:intergenic | 35.0% | |
| AACTTGTGTGACTATTCTCA+AGG | - | chr8_2:4618824-4618843 | Msa1228980:intron | 35.0% | |
| !!! | ACTCATCTTTTTTGTTGCTG+TGG | - | chr8_2:4618888-4618907 | Msa1228980:intron | 35.0% |
| TGACTGTTGTTGTGAAAATG+TGG | - | chr8_2:4619154-4619173 | Msa1228980:CDS | 35.0% | |
| GACTGTTGTTGTGAAAATGT+GGG | - | chr8_2:4619155-4619174 | Msa1228980:CDS | 35.0% | |
| TGTGAAAATGTGGGATGATT+TGG | - | chr8_2:4619164-4619183 | Msa1228980:CDS | 35.0% | |
| GCAAAGGGACTAAAACATAG+GGG | + | chr8_2:4617420-4617439 | None:intergenic | 40.0% | |
| TGGCCAAGTTGTATTCTCAT+CGG | - | chr8_2:4618172-4618191 | Msa1228980:intron | 40.0% | |
| ACACCGATGAGAATACAACT+TGG | + | chr8_2:4618178-4618197 | None:intergenic | 40.0% | |
| ! | TTTGACATTCTAAAGGCGCA+AGG | + | chr8_2:4618224-4618243 | None:intergenic | 40.0% |
| ATGCAAAGGGGCTAAAAGAT+AGG | - | chr8_2:4618658-4618677 | Msa1228980:intron | 40.0% | |
| TGCAAAGGGGCTAAAAGATA+GGG | - | chr8_2:4618659-4618678 | Msa1228980:intron | 40.0% | |
| ACGGTTATCACTCATCTCAT+TGG | - | chr8_2:4618979-4618998 | Msa1228980:intron | 40.0% | |
| ! | AACTGGTGGGTCTTCTAATA+CGG | + | chr8_2:4619016-4619035 | None:intergenic | 40.0% |
| ! | ATAGCTTGCACAAGACAAAC+TGG | + | chr8_2:4619033-4619052 | None:intergenic | 40.0% |
| AGTTTGTCTTGTGCAAGCTA+TGG | - | chr8_2:4619032-4619051 | Msa1228980:CDS | 40.0% | |
| !!! | TGTGCAAGCTATGGTTTTGA+TGG | - | chr8_2:4619041-4619060 | Msa1228980:CDS | 40.0% |
| ATGTGTTGTGTGTGTGTTGT+TGG | - | chr8_2:4619071-4619090 | Msa1228980:CDS | 40.0% | |
| ! | GTTTTCATCAGTTGGATGGT+TGG | - | chr8_2:4619126-4619145 | Msa1228980:CDS | 40.0% |
| GCAAAGGGACTAAAACATAG+GGG | + | chr8_2:4617420-4617439 | None:intergenic | 40.0% | |
| TGGCCAAGTTGTATTCTCAT+CGG | - | chr8_2:4618172-4618191 | Msa1228980:intron | 40.0% | |
| ACACCGATGAGAATACAACT+TGG | + | chr8_2:4618178-4618197 | None:intergenic | 40.0% | |
| ! | TTTGACATTCTAAAGGCGCA+AGG | + | chr8_2:4618224-4618243 | None:intergenic | 40.0% |
| ATGCAAAGGGGCTAAAAGAT+AGG | - | chr8_2:4618658-4618677 | Msa1228980:intron | 40.0% | |
| TGCAAAGGGGCTAAAAGATA+GGG | - | chr8_2:4618659-4618678 | Msa1228980:intron | 40.0% | |
| ACGGTTATCACTCATCTCAT+TGG | - | chr8_2:4618979-4618998 | Msa1228980:intron | 40.0% | |
| ! | AACTGGTGGGTCTTCTAATA+CGG | + | chr8_2:4619016-4619035 | None:intergenic | 40.0% |
| ! | ATAGCTTGCACAAGACAAAC+TGG | + | chr8_2:4619033-4619052 | None:intergenic | 40.0% |
| AGTTTGTCTTGTGCAAGCTA+TGG | - | chr8_2:4619032-4619051 | Msa1228980:CDS | 40.0% | |
| !!! | TGTGCAAGCTATGGTTTTGA+TGG | - | chr8_2:4619041-4619060 | Msa1228980:CDS | 40.0% |
| ATGTGTTGTGTGTGTGTTGT+TGG | - | chr8_2:4619071-4619090 | Msa1228980:CDS | 40.0% | |
| ! | GTTTTCATCAGTTGGATGGT+TGG | - | chr8_2:4619126-4619145 | Msa1228980:CDS | 40.0% |
| TGACCAAGTCAACACATACG+TGG | - | chr8_2:4617464-4617483 | Msa1228980:intron | 45.0% | |
| !! | ATGCCACGTATGTGTTGACT+TGG | + | chr8_2:4617470-4617489 | None:intergenic | 45.0% |
| GCAAAGGGGCTAAAAGATAG+GGG | - | chr8_2:4618660-4618679 | Msa1228980:intron | 45.0% | |
| CTTGCACAAGACAAACTGGT+GGG | + | chr8_2:4619029-4619048 | None:intergenic | 45.0% | |
| TGACCAAGTCAACACATACG+TGG | - | chr8_2:4617464-4617483 | Msa1228980:intron | 45.0% | |
| !! | ATGCCACGTATGTGTTGACT+TGG | + | chr8_2:4617470-4617489 | None:intergenic | 45.0% |
| GCAAAGGGGCTAAAAGATAG+GGG | - | chr8_2:4618660-4618679 | Msa1228980:intron | 45.0% | |
| CTTGCACAAGACAAACTGGT+GGG | + | chr8_2:4619029-4619048 | None:intergenic | 45.0% | |
| !! | AAAAAAATATTAAAAAAATC+TGG | - | chr8_2:4617571-4617590 | Msa1228980:intron | 5.0% |
| !! | AAAAAATTTGAAAAAAAATA+CGG | + | chr8_2:4618334-4618353 | None:intergenic | 5.0% |
| !! | AAAATAATAATAAAAAATTC+TGG | + | chr8_2:4618528-4618547 | None:intergenic | 5.0% |
| !! | AAAAAAATATTAAAAAAATC+TGG | - | chr8_2:4617571-4617590 | Msa1228980:intron | 5.0% |
| !! | AAAAAATTTGAAAAAAAATA+CGG | + | chr8_2:4618334-4618353 | None:intergenic | 5.0% |
| !! | AAAATAATAATAAAAAATTC+TGG | + | chr8_2:4618528-4618547 | None:intergenic | 5.0% |
| !! | ATGCCACGTATGCGTTGACT+TGG | - | chr8_2:4618610-4618629 | Msa1228980:intron | 50.0% |
| TGACCAAGTCAACGCATACG+TGG | + | chr8_2:4618616-4618635 | None:intergenic | 50.0% | |
| GCTTGCACAAGACAAACTGG+TGG | + | chr8_2:4619030-4619049 | None:intergenic | 50.0% | |
| !! | ATGCCACGTATGCGTTGACT+TGG | - | chr8_2:4618610-4618629 | Msa1228980:intron | 50.0% |
| TGACCAAGTCAACGCATACG+TGG | + | chr8_2:4618616-4618635 | None:intergenic | 50.0% | |
| GCTTGCACAAGACAAACTGG+TGG | + | chr8_2:4619030-4619049 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 4617036 | 4619233 | 4617036 | ID=Msa1228980;Name=Msa1228980 |
| chr8_2 | mRNA | 4617036 | 4619233 | 4617036 | ID=Msa1228980-mRNA-1;Parent=Msa1228980;Name=Msa1228980-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|0|0|2|0|194 |
| chr8_2 | exon | 4619029 | 4619233 | 4619029 | ID=Msa1228980-mRNA-1:exon:1586;Parent=Msa1228980-mRNA-1 |
| chr8_2 | exon | 4617036 | 4617415 | 4617036 | ID=Msa1228980-mRNA-1:exon:1585;Parent=Msa1228980-mRNA-1 |
| chr8_2 | CDS | 4619029 | 4619233 | 4619029 | ID=Msa1228980-mRNA-1:cds;Parent=Msa1228980-mRNA-1 |
| chr8_2 | CDS | 4617036 | 4617415 | 4617036 | ID=Msa1228980-mRNA-1:cds;Parent=Msa1228980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
