AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0571140

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0571140 MtrunA17_Chr8g0386271 98.974 390 4 0 1 390 1 390 0.0 807
Msa0571140 MtrunA17_Chr3g0132091 59.631 379 99 20 33 390 6 351 2.43e-126 368
Msa0571140 MtrunA17_Chr7g0224821 44.068 236 107 8 1 234 1 213 8.15e-50 171
Msa0571140 MtrunA17_Chr2g0308321 59.231 130 48 2 45 174 122 246 1.37e-38 145
Msa0571140 MtrunA17_Chr8g0366211 87.912 91 11 0 49 139 39 129 2.11e-38 134
Msa0571140 MtrunA17_Chr4g0061651 54.887 133 48 4 45 174 75 198 3.29e-37 140
Msa0571140 MtrunA17_Chr5g0420051 47.712 153 75 3 45 196 131 279 2.31e-35 134
Msa0571140 MtrunA17_Chr1g0162871 67.901 81 26 0 99 179 104 184 6.94e-33 130
Msa0571140 MtrunA17_Chr2g0302791 52.252 111 52 1 66 176 107 216 1.17e-32 130
Msa0571140 MtrunA17_Chr3g0122411 56.311 103 42 2 98 197 164 266 1.23e-32 127
Msa0571140 MtrunA17_Chr7g0231911 56.842 95 41 0 89 183 139 233 1.63e-32 124
Msa0571140 MtrunA17_Chr7g0270541 48.837 129 63 2 58 183 101 229 2.53e-32 129
Msa0571140 MtrunA17_Chr1g0194121 58.163 98 41 0 85 182 133 230 3.16e-32 129
Msa0571140 MtrunA17_Chr8g0334671 54.867 113 47 1 66 174 150 262 5.14e-32 123
Msa0571140 MtrunA17_Chr7g0258471 34.138 290 136 9 94 372 137 382 1.95e-31 123
Msa0571140 MtrunA17_Chr8g0360361 62.353 85 32 0 99 183 65 149 3.23e-30 114
Msa0571140 MtrunA17_Chr4g0046991 67.568 74 24 0 99 172 73 146 2.08e-29 111
Msa0571140 MtrunA17_Chr2g0282521 61.905 84 32 0 93 176 58 141 6.04e-28 107
Msa0571140 MtrunA17_Chr8g0377421 45.614 114 59 1 99 209 132 245 3.60e-24 101
Msa0571140 MtrunA17_Chr2g0286661 52.703 74 35 0 99 172 103 176 8.43e-22 97.4
Msa0571140 MtrunA17_Chr8g0377401 57.534 73 31 0 99 171 162 234 2.84e-21 92.0
Msa0571140 MtrunA17_Chr2g0317041 61.702 47 18 0 99 145 99 145 9.62e-15 71.2
Msa0571140 MtrunA17_Chr8g0377431 44.286 70 39 0 85 154 137 206 8.11e-13 67.0
Msa0571140 MtrunA17_Chr1g0175031 57.447 47 20 0 99 145 74 120 9.01e-13 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0571140 AT5G50570.1 48.084 287 123 9 1 268 1 280 5.60e-71 227
Msa0571140 AT5G50570.2 48.084 287 123 9 1 268 1 280 5.60e-71 227
Msa0571140 AT5G50670.1 48.084 287 123 9 1 268 1 280 5.60e-71 227
Msa0571140 AT5G50670.2 48.084 287 123 9 1 268 1 280 5.60e-71 227
Msa0571140 AT1G76580.2 65.591 93 32 0 99 191 114 206 5.58e-36 139
Msa0571140 AT1G76580.3 65.591 93 32 0 99 191 114 206 6.51e-36 139
Msa0571140 AT1G76580.1 65.591 93 32 0 99 191 114 206 1.19e-35 139
Msa0571140 AT3G60030.1 58.716 109 41 1 94 198 122 230 5.73e-35 137
Msa0571140 AT2G47070.1 72.152 79 22 0 99 177 106 184 1.05e-34 136
Msa0571140 AT1G20980.1 43.333 180 80 6 2 179 42 201 1.39e-33 133
Msa0571140 AT1G69170.1 64.444 90 32 0 84 173 109 198 3.40e-33 128
Msa0571140 AT1G27370.6 58.889 90 37 0 85 174 162 251 7.43e-33 126
Msa0571140 AT1G27370.1 58.889 90 37 0 85 174 162 251 1.17e-32 127
Msa0571140 AT1G27370.5 58.889 90 37 0 85 174 162 251 1.17e-32 127
Msa0571140 AT1G27370.3 58.889 90 37 0 85 174 162 251 1.17e-32 127
Msa0571140 AT1G27370.2 58.889 90 37 0 85 174 162 251 1.17e-32 127
Msa0571140 AT1G27370.4 58.889 90 37 0 85 174 162 251 1.17e-32 127
Msa0571140 AT1G27370.7 58.889 90 37 0 85 174 162 251 1.17e-32 127
Msa0571140 AT1G53160.3 60.227 88 35 0 89 176 44 131 6.62e-31 116
Msa0571140 AT1G53160.2 60.227 88 35 0 89 176 44 131 8.24e-31 116
Msa0571140 AT1G53160.1 60.227 88 35 0 89 176 44 131 8.24e-31 116
Msa0571140 AT2G42200.1 61.905 84 32 0 96 179 71 154 1.32e-30 120
Msa0571140 AT3G57920.1 52.885 104 49 0 72 175 32 135 1.48e-30 120
Msa0571140 AT1G27360.2 64.557 79 28 0 96 174 172 250 2.27e-30 120
Msa0571140 AT1G27360.1 64.557 79 28 0 96 174 172 250 2.27e-30 120
Msa0571140 AT1G27360.3 64.557 79 28 0 96 174 172 250 2.27e-30 120
Msa0571140 AT1G27360.4 64.557 79 28 0 96 174 172 250 2.27e-30 120
Msa0571140 AT1G02065.1 63.095 84 31 0 89 172 178 261 5.39e-30 118
Msa0571140 AT2G33810.1 66.216 74 25 0 99 172 54 127 1.37e-29 111
Msa0571140 AT5G43270.3 59.302 86 35 0 90 175 160 245 1.56e-29 118
Msa0571140 AT5G43270.1 59.302 86 35 0 90 175 160 245 1.56e-29 118
Msa0571140 AT5G43270.2 59.302 86 35 0 90 175 160 245 1.56e-29 118
Msa0571140 AT3G15270.1 62.162 74 28 0 99 172 63 136 4.30e-28 109
Msa0571140 AT5G18830.3 44.944 89 48 1 86 173 125 213 1.33e-21 97.4
Msa0571140 AT5G18830.1 44.944 89 48 1 86 173 125 213 1.36e-21 97.4
Msa0571140 AT5G18830.2 44.944 89 48 1 86 173 125 213 1.39e-21 97.4
Msa0571140 AT2G47070.2 72.727 55 15 0 123 177 1 55 4.93e-21 95.9
Msa0571140 AT1G02065.2 41.837 98 49 3 57 146 138 235 9.94e-16 76.6

Find 120 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTGTTTCTATGTTGTTTA+AGG 0.109263 4_1:-73669326 None:intergenic
TTTAAACTAACCTTGGTAAT+TGG 0.163177 4_1:-73670434 None:intergenic
GGGGTCTGTGGACTCAGTTT+TGG 0.232288 4_1:+73672270 Msa0571140:CDS
ATCTTCCTCCTCTTCTTATA+AGG 0.234994 4_1:+73672429 Msa0571140:three_prime_UTR
ACAATTTCATCTTCATAATA+AGG 0.257583 4_1:+73668502 Msa0571140:five_prime_UTR
ACACATGATCATCCTGAAAA+TGG 0.265481 4_1:+73672175 Msa0571140:CDS
AAGATGAATGAAACTGAAAA+AGG 0.280302 4_1:-73668403 None:intergenic
GATCATCAGCAAACAAATTA+AGG 0.283399 4_1:-73672458 None:intergenic
TCTTCATCATCTTCAACTTC+AGG 0.292841 4_1:+73669490 Msa0571140:CDS
TTTCAATGGGATTAGATTAG+AGG 0.294187 4_1:+73672394 Msa0571140:exon
AGAAGATAATTGTCATAATA+AGG 0.299682 4_1:-73668269 None:intergenic
GGTAAATCCACCAACATCTT+TGG 0.300549 4_1:-73669458 None:intergenic
TCCCATTGAAAAGGAAATAA+TGG 0.301322 4_1:-73672382 None:intergenic
AAGCTACTACTTCGAGTAAT+AGG 0.322521 4_1:-73670406 None:intergenic
AATGAAGTTCACATACCTTA+TGG 0.332097 4_1:-73669618 None:intergenic
TTCATGGGATTTAACTGAAA+TGG 0.342436 4_1:+73669294 Msa0571140:CDS
AAGATGTTGTTCCAAGAAAA+AGG 0.342659 4_1:-73671943 None:intergenic
AGATGATGAAGATGTCATTT+TGG 0.350943 4_1:-73669479 None:intergenic
GGAAATTCTAGCACTGAATC+AGG 0.359546 4_1:+73669424 Msa0571140:CDS
GATGGTTCAATTAGGAGGTT+TGG 0.365880 4_1:+73669349 Msa0571140:CDS
AGTTTGCATGACCATAGCTT+GGG 0.365920 4_1:+73672250 Msa0571140:CDS
CTTGGGTTGGAGGAGATGTT+AGG 0.371034 4_1:+73671867 Msa0571140:CDS
AAACAATGGATGGTTCAATT+AGG 0.371347 4_1:+73669341 Msa0571140:CDS
TTGAGAAGCATCTTGTGTTA+TGG 0.372893 4_1:+73669249 Msa0571140:intron
GGGTTCATCATAGCAGTAGA+AGG 0.377531 4_1:-73671842 None:intergenic
CTGCTATGATGAACCCTACT+TGG 0.380036 4_1:+73671849 Msa0571140:CDS
CTACTTCGAGTAATAGGTTC+TGG 0.389750 4_1:-73670400 None:intergenic
TTTCCCTTCTTTGTAGCTGC+TGG 0.392060 4_1:-73671969 None:intergenic
TTGTTCCTCAATTTATAACT+TGG 0.392942 4_1:+73672315 Msa0571140:CDS
CATTATTATTCCCCTGAGAA+TGG 0.393387 4_1:-73672351 None:intergenic
TTCTAGTGAATCCCATTCTC+AGG 0.405544 4_1:+73672339 Msa0571140:CDS
TAAATTATTATTATATTACT+TGG 0.408494 4_1:+73668356 Msa0571140:five_prime_UTR
CAGTGGCTGCTGCTGTTGGC+TGG 0.413457 4_1:-73672015 None:intergenic
GTAATTTGAAAGCACCTTCA+TGG 0.414407 4_1:+73669278 Msa0571140:CDS
TTCACAGTGGCTGCTGCTGT+TGG 0.415317 4_1:-73672019 None:intergenic
AAAAGAACCTGCTACATTGC+TGG 0.422583 4_1:-73669687 None:intergenic
TGATCATGTGTTTGTGGTAC+TGG 0.432050 4_1:-73672163 None:intergenic
GTTGGTGTTGATTGTGGCTA+TGG 0.432534 4_1:-73671892 None:intergenic
TTTGGAGATTACAGAACAAA+AGG 0.434418 4_1:+73669367 Msa0571140:CDS
ATCGTTTAAGAAAATCATAT+TGG 0.435628 4_1:+73672543 Msa0571140:three_prime_UTR
CACTTTGTCTTAATGCATGA+AGG 0.437853 4_1:+73672504 Msa0571140:three_prime_UTR
CAACCAGATGGTGCATTTGT+TGG 0.454409 4_1:-73671910 None:intergenic
ATTATTATTCCCCTGAGAAT+GGG 0.465602 4_1:-73672350 None:intergenic
GAGTTTGCATGACCATAGCT+TGG 0.466352 4_1:+73672249 Msa0571140:CDS
CTAATCTAATCCCATTGAAA+AGG 0.467134 4_1:-73672391 None:intergenic
CCATGAGTCGCACGTTTAGC+AGG 0.467652 4_1:+73672065 Msa0571140:CDS
CTTCATCATCTTCAACTTCA+GGG 0.469448 4_1:+73669491 Msa0571140:CDS
AACTTGAGAATGGTAGCAAT+TGG 0.470856 4_1:-73671808 None:intergenic
AATTGTGACCTGTGCAGTCT+TGG 0.471856 4_1:-73669641 None:intergenic
CGAGTAATAGGTTCTGGTTG+TGG 0.475165 4_1:-73670394 None:intergenic
AAGACTGCACAGGTCACAAT+TGG 0.475432 4_1:+73669643 Msa0571140:CDS
GTCTTAATGCATGAAGGCAA+TGG 0.485388 4_1:+73672510 Msa0571140:three_prime_UTR
TGTTCCTCAATTTATAACTT+GGG 0.485493 4_1:+73672316 Msa0571140:CDS
ATGAACCCTACTTGGGTTGG+AGG 0.486277 4_1:+73671857 Msa0571140:CDS
ATGAAGGAAAGAGGAGCTGT+AGG 0.487258 4_1:+73670335 Msa0571140:CDS
TGACCATAGCTTGGGGTCTG+TGG 0.493672 4_1:+73672258 Msa0571140:CDS
GTCATGCAAACTCAAGCCTA+AGG 0.500554 4_1:-73672239 None:intergenic
TCAGATAGTTTCATGTCTTG+TGG 0.502100 4_1:+73669549 Msa0571140:CDS
CCTGCTAAACGTGCGACTCA+TGG 0.502871 4_1:-73672065 None:intergenic
CAATGGATGGTTCAATTAGG+AGG 0.503930 4_1:+73669344 Msa0571140:CDS
TCAACCAGCAGCTACAAAGA+AGG 0.503966 4_1:+73671965 Msa0571140:CDS
AGACTATCATAGACGCCATA+AGG 0.506230 4_1:+73669603 Msa0571140:CDS
ACTTGAGAATGGTAGCAATT+GGG 0.507340 4_1:-73671807 None:intergenic
GTGCGACTCATGGATGAAGC+TGG 0.513016 4_1:-73672055 None:intergenic
TAATTTGAAAGCACCTTCAT+GGG 0.516062 4_1:+73669279 Msa0571140:CDS
ACACCAACAAATGCACCATC+TGG 0.516097 4_1:+73671907 Msa0571140:CDS
ACATCTCCTCCAACCCAAGT+AGG 0.516216 4_1:-73671863 None:intergenic
TGAAAGTTGAAGCTAAAACT+TGG 0.518290 4_1:-73668444 None:intergenic
CTGTATATGTAGCTTGAGAA+AGG 0.518416 4_1:-73668298 None:intergenic
GAGCTAGAGCTATCAACAAT+GGG 0.520984 4_1:+73669524 Msa0571140:CDS
TCAGGATGATCATGTGTTTG+TGG 0.524418 4_1:-73672169 None:intergenic
GCATTTGTTGGTGTTGATTG+TGG 0.524493 4_1:-73671898 None:intergenic
GATGAAATTGTGGATTTGAA+AGG 0.525997 4_1:-73668490 None:intergenic
AGCTGTAGGAAACGCTTAGA+TGG 0.526456 4_1:+73670349 Msa0571140:CDS
ACTGCACAGGTCACAATTGG+TGG 0.532124 4_1:+73669646 Msa0571140:CDS
AGGAATTTGATGAAGGAAAG+AGG 0.537908 4_1:+73670326 Msa0571140:CDS
AGAACCCAAGTTATAAATTG+AGG 0.540593 4_1:-73672320 None:intergenic
GGTTCTGCCAGCAATGTAGC+AGG 0.542918 4_1:+73669680 Msa0571140:CDS
ATAATTGTCATAATAAGGAC+AGG 0.547826 4_1:-73668264 None:intergenic
ATAGTTTCATGTCTTGTGGA+TGG 0.552133 4_1:+73669553 Msa0571140:CDS
CATCTCCTCCAACCCAAGTA+GGG 0.552239 4_1:-73671862 None:intergenic
CTCATGGATGAAGCTGGAAG+AGG 0.554579 4_1:-73672049 None:intergenic
GATTTAACTGAAATGGATCA+AGG 0.556449 4_1:+73669301 Msa0571140:CDS
TATACATGTGAACTTGAGAA+TGG 0.557360 4_1:-73671818 None:intergenic
GCTCTAGAGGAATTTGATGA+AGG 0.560175 4_1:+73670319 Msa0571140:CDS
TCATAATAAGGACAGGCTGT+TGG 0.561129 4_1:-73668257 None:intergenic
ACAAAGTCCAAAGATGTTGG+TGG 0.562124 4_1:+73669451 Msa0571140:CDS
CATCAAATTCCTCTAGAGCA+TGG 0.562487 4_1:-73670315 None:intergenic
CTTAAACAACATAGAAACAA+TGG 0.562677 4_1:+73669327 Msa0571140:CDS
TTATTATGAAGATGAAATTG+TGG 0.562818 4_1:-73668500 None:intergenic
ATGATGAACCCTACTTGGGT+TGG 0.564738 4_1:+73671854 Msa0571140:CDS
ATTTCAGTTAAATCCCATGA+AGG 0.568024 4_1:-73669292 None:intergenic
CTTACAAAGTCCAAAGATGT+TGG 0.572874 4_1:+73669448 Msa0571140:CDS
CAACCAGCAGCTACAAAGAA+GGG 0.573578 4_1:+73671966 Msa0571140:CDS
GACAACCTTATAAGAAGAGG+AGG 0.573731 4_1:-73672434 None:intergenic
TGCTATGATGAACCCTACTT+GGG 0.579124 4_1:+73671850 Msa0571140:CDS
GGTCTTGTTTATCAACCAGA+TGG 0.579275 4_1:-73671922 None:intergenic
AGAGCTAGAGCTATCAACAA+TGG 0.587150 4_1:+73669523 Msa0571140:CDS
GAAATTCTAGCACTGAATCA+GGG 0.589286 4_1:+73669425 Msa0571140:CDS
AGTCCACAGACCCCAAGCTA+TGG 0.589981 4_1:-73672261 None:intergenic
GTTTGCATGACCATAGCTTG+GGG 0.604245 4_1:+73672251 Msa0571140:CDS
GATTTGAAGCTTGGCCATGT+TGG 0.605175 4_1:+73669403 Msa0571140:CDS
GGTGACAACCTTATAAGAAG+AGG 0.605811 4_1:-73672437 None:intergenic
GTGTAGGTTCCATGCTCTAG+AGG 0.610810 4_1:+73670306 Msa0571140:intron
TCTAGTGAATCCCATTCTCA+GGG 0.611691 4_1:+73672340 Msa0571140:CDS
GATTTGAAAGGACAATTGTG+TGG 0.618328 4_1:-73668478 None:intergenic
GCTTAGATGGTCACAACCGA+CGG 0.619901 4_1:+73670362 Msa0571140:CDS
TCATGCAAACTCAAGCCTAA+GGG 0.620270 4_1:-73672238 None:intergenic
GTTGAAGCTAAAACTTGGAG+AGG 0.621827 4_1:-73668439 None:intergenic
GGTTCATCATAGCAGTAGAA+GGG 0.627296 4_1:-73671841 None:intergenic
TGAAAATGGATTGAATCAGA+TGG 0.631963 4_1:+73672189 Msa0571140:CDS
CAGTGCTAGAATTTCCAACA+TGG 0.635549 4_1:-73669417 None:intergenic
AACAACATAGAAACAATGGA+TGG 0.636248 4_1:+73669331 Msa0571140:CDS
ACTTCATTCCAAGACTGCAC+AGG 0.639272 4_1:+73669633 Msa0571140:CDS
CAATTGGTGGACATAAGCAA+AGG 0.658162 4_1:+73669659 Msa0571140:CDS
AAGCATCTTGTGTTATGGAG+TGG 0.679671 4_1:+73669254 Msa0571140:intron
TTGGGTTCAAATGATCAGAG+TGG 0.682356 4_1:+73672289 Msa0571140:CDS
AAGAGGTTGGTTGTTCACAG+TGG 0.701313 4_1:-73672032 None:intergenic
TGGATGAAGCTGGAAGAGGT+TGG 0.704527 4_1:-73672045 None:intergenic
CTAGTGAATCCCATTCTCAG+GGG 0.746099 4_1:+73672341 Msa0571140:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATTTCAAGATATAAAAT+AGG - chr4_1:73669030-73669049 None:intergenic 10.0%
!!! TCTTTTTTACTAAAAATAGA+GGG - chr4_1:73668331-73668350 None:intergenic 15.0%
!!! TTCTTTTTTACTAAAAATAG+AGG - chr4_1:73668332-73668351 None:intergenic 15.0%
!! GTAAAAACAAAATGTAAAAA+AGG - chr4_1:73668728-73668747 None:intergenic 15.0%
!!! TTTAAAGTGATAATAAATAG+AGG - chr4_1:73669066-73669085 None:intergenic 15.0%
!! AAATAAAGAGAAAATTATGA+AGG - chr4_1:73669215-73669234 None:intergenic 15.0%
!! TAGATAAATATTTAGATCAA+AGG - chr4_1:73670168-73670187 None:intergenic 15.0%
!! AATTAACCATTTATAACTTA+AGG + chr4_1:73671512-73671531 Msa0571140:intron 15.0%
!! ATTAACCATTTATAACTTAA+GGG + chr4_1:73671513-73671532 Msa0571140:intron 15.0%
!! AGAAGATAATTGTCATAATA+AGG - chr4_1:73668272-73668291 None:intergenic 20.0%
!! TTATTATGAAGATGAAATTG+TGG - chr4_1:73668503-73668522 None:intergenic 20.0%
!! ACAATTTCATCTTCATAATA+AGG + chr4_1:73668502-73668521 Msa0571140:five_prime_UTR 20.0%
!!! GATTTTATGTTATATAGAGA+AGG - chr4_1:73668553-73668572 None:intergenic 20.0%
!! ACATAATTTAGAAGTTTACT+AGG - chr4_1:73669838-73669857 None:intergenic 20.0%
!!! ATTAACAAGTGTTTTAGTAA+GGG - chr4_1:73670042-73670061 None:intergenic 20.0%
!!! AATTAACAAGTGTTTTAGTA+AGG - chr4_1:73670043-73670062 None:intergenic 20.0%
!!! CTAAAACACTTGTTAATTAA+TGG + chr4_1:73670045-73670064 Msa0571140:intron 20.0%
!!! ATTTTATCTGATTTTGCATA+TGG + chr4_1:73670134-73670153 Msa0571140:intron 20.0%
!! AAATGTACAAATACAATACA+AGG - chr4_1:73670880-73670899 None:intergenic 20.0%
!!! GAAATATCACTTCTTTTTTT+GGG - chr4_1:73670982-73671001 None:intergenic 20.0%
!!! AGAAATATCACTTCTTTTTT+TGG - chr4_1:73670983-73671002 None:intergenic 20.0%
!! TTAATAAATTAAACCAAACC+AGG + chr4_1:73671031-73671050 Msa0571140:intron 20.0%
!! CTCATATAAAGTAGTATATA+TGG - chr4_1:73671127-73671146 None:intergenic 20.0%
!! ATTATTCATGATTGAAATTC+CGG + chr4_1:73671205-73671224 Msa0571140:intron 20.0%
!! AACAAAAATAAGAGAATAAC+CGG - chr4_1:73671227-73671246 None:intergenic 20.0%
!!! CTCTAACATTTGAAATTTAA+GGG - chr4_1:73671320-73671339 None:intergenic 20.0%
!!! TCTCTAACATTTGAAATTTA+AGG - chr4_1:73671321-73671340 None:intergenic 20.0%
!! TTAACCATTTATAACTTAAG+GGG + chr4_1:73671514-73671533 Msa0571140:intron 20.0%
!!! GTTTCTTTTTTAATCATGTT+GGG - chr4_1:73671615-73671634 None:intergenic 20.0%
!!! AGTTTCTTTTTTAATCATGT+TGG - chr4_1:73671616-73671635 None:intergenic 20.0%
!! ATGATTAAAAAAGAAACTTG+AGG + chr4_1:73671618-73671637 Msa0571140:intron 20.0%
!! TGATTAAAAAAGAAACTTGA+GGG + chr4_1:73671619-73671638 Msa0571140:intron 20.0%
!! CTTTATCAGTATTAATGATT+TGG + chr4_1:73671689-73671708 Msa0571140:intron 20.0%
!!! GTTTTGTTTTTGTTATGAAA+AGG + chr4_1:73671713-73671732 Msa0571140:intron 20.0%
!!! ATTTTGTATCTTTCTGAAAA+AGG - chr4_1:73672097-73672116 None:intergenic 20.0%
!!! AATATGATTTTCTTAAACGA+TGG - chr4_1:73672544-73672563 None:intergenic 20.0%
!! ATCGTTTAAGAAAATCATAT+TGG + chr4_1:73672543-73672562 Msa0571140:three_prime_UTR 20.0%
! ATAATTGTCATAATAAGGAC+AGG - chr4_1:73668267-73668286 None:intergenic 25.0%
! AGATGAATGAAACTGAAAAA+GGG - chr4_1:73668405-73668424 None:intergenic 25.0%
! AAGATGAATGAAACTGAAAA+AGG - chr4_1:73668406-73668425 None:intergenic 25.0%
! TTTCATCTTCATAATAAGGT+AGG + chr4_1:73668506-73668525 Msa0571140:intron 25.0%
! TTCATCTTCATAATAAGGTA+GGG + chr4_1:73668507-73668526 Msa0571140:intron 25.0%
! CTGAAAGTTACAAATTAAGA+GGG - chr4_1:73668846-73668865 None:intergenic 25.0%
! ACTGAAAGTTACAAATTAAG+AGG - chr4_1:73668847-73668866 None:intergenic 25.0%
!!! ATGTTTTTTTTAGCACTCTT+TGG + chr4_1:73668922-73668941 Msa0571140:intron 25.0%
! TATGCAAACATAATAGACAT+TGG - chr4_1:73669000-73669019 None:intergenic 25.0%
! AATGTCTATTATGTTTGCAT+AGG + chr4_1:73668999-73669018 Msa0571140:intron 25.0%
! AGAGAAATTAACAACAACAT+TGG - chr4_1:73669109-73669128 None:intergenic 25.0%
!!! CATTGTTTCTATGTTGTTTA+AGG - chr4_1:73669329-73669348 None:intergenic 25.0%
! CTTAAACAACATAGAAACAA+TGG + chr4_1:73669327-73669346 Msa0571140:CDS 25.0%
! ATGAAGTTAGCATGAATAAT+GGG - chr4_1:73669870-73669889 None:intergenic 25.0%
! TATGAAGTTAGCATGAATAA+TGG - chr4_1:73669871-73669890 None:intergenic 25.0%
!!! TTGAGATTCCTTTTTTGTTA+AGG - chr4_1:73669969-73669988 None:intergenic 25.0%
! TCTACTAGTAAGATTTAGAT+GGG - chr4_1:73670221-73670240 None:intergenic 25.0%
! ATCTACTAGTAAGATTTAGA+TGG - chr4_1:73670222-73670241 None:intergenic 25.0%
!!! AGTAGATTCTGAAATTAAAG+TGG + chr4_1:73670235-73670254 Msa0571140:intron 25.0%
!! TTTAAACTAACCTTGGTAAT+TGG - chr4_1:73670437-73670456 None:intergenic 25.0%
! CTATAACTTTAAACTAACCT+TGG - chr4_1:73670444-73670463 None:intergenic 25.0%
! TCCAAATCTAGACAATTATT+GGG - chr4_1:73670492-73670511 None:intergenic 25.0%
! CAAAAATTACATAATGCACT+TGG + chr4_1:73670573-73670592 Msa0571140:intron 25.0%
!!! CATGTTTGTTGTTTTAGTAA+TGG - chr4_1:73670693-73670712 None:intergenic 25.0%
! TCAATAATTCTTGCATCATT+CGG + chr4_1:73670825-73670844 Msa0571140:intron 25.0%
! CAAACGAAAAATAGACAAAA+GGG - chr4_1:73671403-73671422 None:intergenic 25.0%
! TCAAACGAAAAATAGACAAA+AGG - chr4_1:73671404-73671423 None:intergenic 25.0%
! GTTAAAATATAATGGCACAT+AGG - chr4_1:73671442-73671461 None:intergenic 25.0%
!!! GCCATTATATTTTAACAAGA+CGG + chr4_1:73671446-73671465 Msa0571140:intron 25.0%
!! TCCGTCTTGTTAAAATATAA+TGG - chr4_1:73671450-73671469 None:intergenic 25.0%
! TAACCATTTATAACTTAAGG+GGG + chr4_1:73671515-73671534 Msa0571140:intron 25.0%
! TTGTTCCTCAATTTATAACT+TGG + chr4_1:73672315-73672334 Msa0571140:CDS 25.0%
! TGTTCCTCAATTTATAACTT+GGG + chr4_1:73672316-73672335 Msa0571140:CDS 25.0%
!! TCCATTATTTCCTTTTCAAT+GGG + chr4_1:73672381-73672400 Msa0571140:CDS 25.0%
TGAAAGTTGAAGCTAAAACT+TGG - chr4_1:73668447-73668466 None:intergenic 30.0%
GATGAAATTGTGGATTTGAA+AGG - chr4_1:73668493-73668512 None:intergenic 30.0%
!! AGCTCTTTAATTTGACTATC+TGG + chr4_1:73668656-73668675 Msa0571140:intron 30.0%
TGAAAGATGAAGAAGTAAAC+AGG - chr4_1:73668692-73668711 None:intergenic 30.0%
TTTGTAACTTTCAGTTTCCT+TGG + chr4_1:73668852-73668871 Msa0571140:intron 30.0%
! ACTCTCTCTTTTCCTTAATA+AGG + chr4_1:73668969-73668988 Msa0571140:intron 30.0%
!! ACATTGGTTTGTCCTTATTA+AGG - chr4_1:73668984-73669003 None:intergenic 30.0%
AACTAGACACTTGCAAAAAT+AGG - chr4_1:73669181-73669200 None:intergenic 30.0%
!! TAATTTGAAAGCACCTTCAT+GGG + chr4_1:73669279-73669298 Msa0571140:CDS 30.0%
ATTTCAGTTAAATCCCATGA+AGG - chr4_1:73669295-73669314 None:intergenic 30.0%
TTCATGGGATTTAACTGAAA+TGG + chr4_1:73669294-73669313 Msa0571140:CDS 30.0%
GATTTAACTGAAATGGATCA+AGG + chr4_1:73669301-73669320 Msa0571140:CDS 30.0%
AACAACATAGAAACAATGGA+TGG + chr4_1:73669331-73669350 Msa0571140:CDS 30.0%
AAACAATGGATGGTTCAATT+AGG + chr4_1:73669341-73669360 Msa0571140:CDS 30.0%
TTTGGAGATTACAGAACAAA+AGG + chr4_1:73669367-73669386 Msa0571140:CDS 30.0%
!!! TTTTCTGTTGATTTGAAGCT+TGG + chr4_1:73669394-73669413 Msa0571140:CDS 30.0%
!! AGATGATGAAGATGTCATTT+TGG - chr4_1:73669482-73669501 None:intergenic 30.0%
AATGAAGTTCACATACCTTA+TGG - chr4_1:73669621-73669640 None:intergenic 30.0%
! AATTTAGCCTTCATTAGAAG+AGG + chr4_1:73669931-73669950 Msa0571140:intron 30.0%
AGCACAATCCTTAACAAAAA+AGG + chr4_1:73669958-73669977 Msa0571140:intron 30.0%
AATACACACATGTTGTAACT+TGG + chr4_1:73670084-73670103 Msa0571140:intron 30.0%
TTGGTTATAAATTCTCAACG+AGG + chr4_1:73670103-73670122 Msa0571140:intron 30.0%
CTACTAGTAAGATTTAGATG+GGG - chr4_1:73670220-73670239 None:intergenic 30.0%
TGGTGAAAATGATATTCTCT+AGG + chr4_1:73670255-73670274 Msa0571140:intron 30.0%
GTAAGTTTCCTTAATTGTGT+AGG + chr4_1:73670290-73670309 Msa0571140:intron 30.0%
TAGCTAACATATTATCTGAG+TGG + chr4_1:73670465-73670484 Msa0571140:intron 30.0%
ACCCAATAATTGTCTAGATT+TGG + chr4_1:73670488-73670507 Msa0571140:intron 30.0%
CTCCAAATCTAGACAATTAT+TGG - chr4_1:73670493-73670512 None:intergenic 30.0%
TAAGATGTTTGTACCTATGT+GGG - chr4_1:73670535-73670554 None:intergenic 30.0%
TTAAGATGTTTGTACCTATG+TGG - chr4_1:73670536-73670555 None:intergenic 30.0%
TCATAAACATGGCAAATAAG+TGG - chr4_1:73670659-73670678 None:intergenic 30.0%
TTTGACTGTGTGTAGTTAAT+TGG + chr4_1:73670910-73670929 Msa0571140:intron 30.0%
ATAGTGCAGTAGTTATCTAT+AGG + chr4_1:73671254-73671273 Msa0571140:intron 30.0%
! TTTTAACAAGACGGAAAAGA+AGG + chr4_1:73671455-73671474 Msa0571140:intron 30.0%
TTACCCCCTTAAGTTATAAA+TGG - chr4_1:73671521-73671540 None:intergenic 30.0%
TCTACTGTATTACTACATGA+AGG - chr4_1:73671740-73671759 None:intergenic 30.0%
TATACATGTGAACTTGAGAA+TGG - chr4_1:73671821-73671840 None:intergenic 30.0%
! GATAAACAAGACCTTTTTCT+TGG + chr4_1:73671932-73671951 Msa0571140:CDS 30.0%
AAGATGTTGTTCCAAGAAAA+AGG - chr4_1:73671946-73671965 None:intergenic 30.0%
! GTATCTTTCTGAAAAAGGAT+TGG - chr4_1:73672092-73672111 None:intergenic 30.0%
! ATCTGATTCAATCCATTTTC+AGG - chr4_1:73672190-73672209 None:intergenic 30.0%
!! TGAAAATGGATTGAATCAGA+TGG + chr4_1:73672189-73672208 Msa0571140:CDS 30.0%
AGAACCCAAGTTATAAATTG+AGG - chr4_1:73672323-73672342 None:intergenic 30.0%
ATTATTATTCCCCTGAGAAT+GGG - chr4_1:73672353-73672372 None:intergenic 30.0%
! CTCCATTATTTCCTTTTCAA+TGG + chr4_1:73672380-73672399 Msa0571140:CDS 30.0%
TCCCATTGAAAAGGAAATAA+TGG - chr4_1:73672385-73672404 None:intergenic 30.0%
CTAATCTAATCCCATTGAAA+AGG - chr4_1:73672394-73672413 None:intergenic 30.0%
TTTCAATGGGATTAGATTAG+AGG + chr4_1:73672394-73672413 Msa0571140:exon 30.0%
GATCATCAGCAAACAAATTA+AGG - chr4_1:73672461-73672480 None:intergenic 30.0%
CTGTATATGTAGCTTGAGAA+AGG - chr4_1:73668301-73668320 None:intergenic 35.0%
GATTTGAAAGGACAATTGTG+TGG - chr4_1:73668481-73668500 None:intergenic 35.0%
AAAAAAAGGCAGAAAGAGAG+AGG - chr4_1:73668575-73668594 None:intergenic 35.0%
ATTGGCACTTTAATTGAGCA+AGG - chr4_1:73669091-73669110 None:intergenic 35.0%
!! TTGAGAAGCATCTTGTGTTA+TGG + chr4_1:73669249-73669268 Msa0571140:intron 35.0%
!! GTAATTTGAAAGCACCTTCA+TGG + chr4_1:73669278-73669297 Msa0571140:CDS 35.0%
! GAAATTCTAGCACTGAATCA+GGG + chr4_1:73669425-73669444 Msa0571140:CDS 35.0%
CTTACAAAGTCCAAAGATGT+TGG + chr4_1:73669448-73669467 Msa0571140:CDS 35.0%
TCTTCATCATCTTCAACTTC+AGG + chr4_1:73669490-73669509 Msa0571140:CDS 35.0%
CTTCATCATCTTCAACTTCA+GGG + chr4_1:73669491-73669510 Msa0571140:CDS 35.0%
TCAGATAGTTTCATGTCTTG+TGG + chr4_1:73669549-73669568 Msa0571140:CDS 35.0%
ATAGTTTCATGTCTTGTGGA+TGG + chr4_1:73669553-73669572 Msa0571140:CDS 35.0%
TGACAAAGCATAACACACAA+GGG - chr4_1:73669740-73669759 None:intergenic 35.0%
ATGACAAAGCATAACACACA+AGG - chr4_1:73669741-73669760 None:intergenic 35.0%
AGGAATTTGATGAAGGAAAG+AGG + chr4_1:73670326-73670345 Msa0571140:CDS 35.0%
AAGCTACTACTTCGAGTAAT+AGG - chr4_1:73670409-73670428 None:intergenic 35.0%
! AGCTTTTTGTCCAATTACCA+AGG + chr4_1:73670424-73670443 Msa0571140:CDS 35.0%
AAGATGTTTGTACCTATGTG+GGG - chr4_1:73670534-73670553 None:intergenic 35.0%
AATTACATAATGCACTTGGC+TGG + chr4_1:73670577-73670596 Msa0571140:intron 35.0%
CAAATAAGTGGACCAAATCA+AGG - chr4_1:73670647-73670666 None:intergenic 35.0%
CCACTAGATTGTCATAAACA+TGG - chr4_1:73670670-73670689 None:intergenic 35.0%
CCATGTTTATGACAATCTAG+TGG + chr4_1:73670667-73670686 Msa0571140:intron 35.0%
!! ACTTTTCAGCTTTTGAGTGA+GGG + chr4_1:73670742-73670761 Msa0571140:intron 35.0%
! GTTATCTATAGGTTTTGCTC+TGG + chr4_1:73671265-73671284 Msa0571140:intron 35.0%
AATGGCACATAGGAAACATT+TGG - chr4_1:73671432-73671451 None:intergenic 35.0%
ACTTGAGAATGGTAGCAATT+GGG - chr4_1:73671810-73671829 None:intergenic 35.0%
AACTTGAGAATGGTAGCAAT+TGG - chr4_1:73671811-73671830 None:intergenic 35.0%
ACACATGATCATCCTGAAAA+TGG + chr4_1:73672175-73672194 Msa0571140:CDS 35.0%
! TCATCTTTTATGCAACCCTT+AGG + chr4_1:73672223-73672242 Msa0571140:CDS 35.0%
CATTATTATTCCCCTGAGAA+TGG - chr4_1:73672354-73672373 None:intergenic 35.0%
ATCTTCCTCCTCTTCTTATA+AGG + chr4_1:73672429-73672448 Msa0571140:three_prime_UTR 35.0%
CACTTTGTCTTAATGCATGA+AGG + chr4_1:73672504-73672523 Msa0571140:three_prime_UTR 35.0%
TCATAATAAGGACAGGCTGT+TGG - chr4_1:73668260-73668279 None:intergenic 40.0%
GTTGAAGCTAAAACTTGGAG+AGG - chr4_1:73668442-73668461 None:intergenic 40.0%
!! TTTTTAGCACTCTTTGGTGC+AGG + chr4_1:73668928-73668947 Msa0571140:intron 40.0%
AAGCATCTTGTGTTATGGAG+TGG + chr4_1:73669254-73669273 Msa0571140:intron 40.0%
CAATGGATGGTTCAATTAGG+AGG + chr4_1:73669344-73669363 Msa0571140:CDS 40.0%
GATGGTTCAATTAGGAGGTT+TGG + chr4_1:73669349-73669368 Msa0571140:CDS 40.0%
CAGTGCTAGAATTTCCAACA+TGG - chr4_1:73669420-73669439 None:intergenic 40.0%
! GGAAATTCTAGCACTGAATC+AGG + chr4_1:73669424-73669443 Msa0571140:CDS 40.0%
ACAAAGTCCAAAGATGTTGG+TGG + chr4_1:73669451-73669470 Msa0571140:CDS 40.0%
GGTAAATCCACCAACATCTT+TGG - chr4_1:73669461-73669480 None:intergenic 40.0%
AGAGCTAGAGCTATCAACAA+TGG + chr4_1:73669523-73669542 Msa0571140:CDS 40.0%
GAGCTAGAGCTATCAACAAT+GGG + chr4_1:73669524-73669543 Msa0571140:CDS 40.0%
AGACTATCATAGACGCCATA+AGG + chr4_1:73669603-73669622 Msa0571140:CDS 40.0%
! CAATTGGTGGACATAAGCAA+AGG + chr4_1:73669659-73669678 Msa0571140:CDS 40.0%
AAAAGAACCTGCTACATTGC+TGG - chr4_1:73669690-73669709 None:intergenic 40.0%
GGGGAAACACAAAAAGCTTA+TGG - chr4_1:73669720-73669739 None:intergenic 40.0%
GACAAAGCATAACACACAAG+GGG - chr4_1:73669739-73669758 None:intergenic 40.0%
GCTTCTACCTCTTCTAATGA+AGG - chr4_1:73669941-73669960 None:intergenic 40.0%
GCATGGAACCTACACAATTA+AGG - chr4_1:73670301-73670320 None:intergenic 40.0%
!! CATCAAATTCCTCTAGAGCA+TGG - chr4_1:73670318-73670337 None:intergenic 40.0%
!! GCTCTAGAGGAATTTGATGA+AGG + chr4_1:73670319-73670338 Msa0571140:CDS 40.0%
CTACTTCGAGTAATAGGTTC+TGG - chr4_1:73670403-73670422 None:intergenic 40.0%
TAAGTGGACCAAATCAAGGA+TGG - chr4_1:73670643-73670662 None:intergenic 40.0%
!! GACTTTTCAGCTTTTGAGTG+AGG + chr4_1:73670741-73670760 Msa0571140:intron 40.0%
GGTTCATCATAGCAGTAGAA+GGG - chr4_1:73671844-73671863 None:intergenic 40.0%
TGCTATGATGAACCCTACTT+GGG + chr4_1:73671850-73671869 Msa0571140:CDS 40.0%
!! GCATTTGTTGGTGTTGATTG+TGG - chr4_1:73671901-73671920 None:intergenic 40.0%
!! GGTCTTGTTTATCAACCAGA+TGG - chr4_1:73671925-73671944 None:intergenic 40.0%
TGATCATGTGTTTGTGGTAC+TGG - chr4_1:73672166-73672185 None:intergenic 40.0%
TCAGGATGATCATGTGTTTG+TGG - chr4_1:73672172-73672191 None:intergenic 40.0%
TCATGCAAACTCAAGCCTAA+GGG - chr4_1:73672241-73672260 None:intergenic 40.0%
AGTTTGCATGACCATAGCTT+GGG + chr4_1:73672250-73672269 Msa0571140:CDS 40.0%
TTGGGTTCAAATGATCAGAG+TGG + chr4_1:73672289-73672308 Msa0571140:CDS 40.0%
TTCTAGTGAATCCCATTCTC+AGG + chr4_1:73672339-73672358 Msa0571140:CDS 40.0%
TCTAGTGAATCCCATTCTCA+GGG + chr4_1:73672340-73672359 Msa0571140:CDS 40.0%
GACAACCTTATAAGAAGAGG+AGG - chr4_1:73672437-73672456 None:intergenic 40.0%
GGTGACAACCTTATAAGAAG+AGG - chr4_1:73672440-73672459 None:intergenic 40.0%
GTCTTAATGCATGAAGGCAA+TGG + chr4_1:73672510-73672529 Msa0571140:three_prime_UTR 40.0%
! GATTTGAAGCTTGGCCATGT+TGG + chr4_1:73669403-73669422 Msa0571140:CDS 45.0%
ACTTCATTCCAAGACTGCAC+AGG + chr4_1:73669633-73669652 Msa0571140:CDS 45.0%
AATTGTGACCTGTGCAGTCT+TGG - chr4_1:73669644-73669663 None:intergenic 45.0%
AAGACTGCACAGGTCACAAT+TGG + chr4_1:73669643-73669662 Msa0571140:CDS 45.0%
ATGAAGGAAAGAGGAGCTGT+AGG + chr4_1:73670335-73670354 Msa0571140:CDS 45.0%
AGCTGTAGGAAACGCTTAGA+TGG + chr4_1:73670349-73670368 Msa0571140:CDS 45.0%
! GTTGTGGTTTTCTTCTCCGT+CGG - chr4_1:73670381-73670400 None:intergenic 45.0%
! CGAGTAATAGGTTCTGGTTG+TGG - chr4_1:73670397-73670416 None:intergenic 45.0%
! TTTGGAGCAGACAATTGCTG+AGG + chr4_1:73670506-73670525 Msa0571140:intron 45.0%
TGGACCAAATCAAGGATGGT+GGG - chr4_1:73670639-73670658 None:intergenic 45.0%
GGGTTCATCATAGCAGTAGA+AGG - chr4_1:73671845-73671864 None:intergenic 45.0%
CTGCTATGATGAACCCTACT+TGG + chr4_1:73671849-73671868 Msa0571140:CDS 45.0%
ATGATGAACCCTACTTGGGT+TGG + chr4_1:73671854-73671873 Msa0571140:CDS 45.0%
!! GTTGGTGTTGATTGTGGCTA+TGG - chr4_1:73671895-73671914 None:intergenic 45.0%
ACACCAACAAATGCACCATC+TGG + chr4_1:73671907-73671926 Msa0571140:CDS 45.0%
CAACCAGATGGTGCATTTGT+TGG - chr4_1:73671913-73671932 None:intergenic 45.0%
TCAACCAGCAGCTACAAAGA+AGG + chr4_1:73671965-73671984 Msa0571140:CDS 45.0%
CAACCAGCAGCTACAAAGAA+GGG + chr4_1:73671966-73671985 Msa0571140:CDS 45.0%
TTTCCCTTCTTTGTAGCTGC+TGG - chr4_1:73671972-73671991 None:intergenic 45.0%
! AAGAGGTTGGTTGTTCACAG+TGG - chr4_1:73672035-73672054 None:intergenic 45.0%
GTCATGCAAACTCAAGCCTA+AGG - chr4_1:73672242-73672261 None:intergenic 45.0%
GAGTTTGCATGACCATAGCT+TGG + chr4_1:73672249-73672268 Msa0571140:CDS 45.0%
GTTTGCATGACCATAGCTTG+GGG + chr4_1:73672251-73672270 Msa0571140:CDS 45.0%
CTAGTGAATCCCATTCTCAG+GGG + chr4_1:73672341-73672360 Msa0571140:CDS 45.0%
!! TAAATTATTATTATATTACT+TGG + chr4_1:73668356-73668375 Msa0571140:five_prime_UTR 5.0%
!! AAAATAAAACAAAAAAAAAA+AGG - chr4_1:73668589-73668608 None:intergenic 5.0%
!! ATGTTATAAAAAAAAAAAAA+AGG - chr4_1:73668792-73668811 None:intergenic 5.0%
!!! TAATATATATTTTTTTTATC+AGG + chr4_1:73671782-73671801 Msa0571140:intron 5.0%
TCCTTGGAACTCTCTCAGCT+TGG + chr4_1:73668868-73668887 Msa0571140:intron 50.0%
ACTGCACAGGTCACAATTGG+TGG + chr4_1:73669646-73669665 Msa0571140:CDS 50.0%
GTGTAGGTTCCATGCTCTAG+AGG + chr4_1:73670306-73670325 Msa0571140:intron 50.0%
GCTTAGATGGTCACAACCGA+CGG + chr4_1:73670362-73670381 Msa0571140:CDS 50.0%
ATTGCTGAGGATCCCCACAT+AGG + chr4_1:73670519-73670538 Msa0571140:intron 50.0%
ACATAATGCACTTGGCTGGC+TGG + chr4_1:73670581-73670600 Msa0571140:intron 50.0%
GTGGACCAAATCAAGGATGG+TGG - chr4_1:73670640-73670659 None:intergenic 50.0%
ACTAGACACGACACCTGGTT+TGG - chr4_1:73671047-73671066 None:intergenic 50.0%
TAGACACTAGACACGACACC+TGG - chr4_1:73671052-73671071 None:intergenic 50.0%
!! ATGAACCCTACTTGGGTTGG+AGG + chr4_1:73671857-73671876 Msa0571140:CDS 50.0%
CATCTCCTCCAACCCAAGTA+GGG - chr4_1:73671865-73671884 None:intergenic 50.0%
ACATCTCCTCCAACCCAAGT+AGG - chr4_1:73671866-73671885 None:intergenic 50.0%
!! CTTGGGTTGGAGGAGATGTT+AGG + chr4_1:73671867-73671886 Msa0571140:CDS 50.0%
TGGATGAAGCTGGAAGAGGT+TGG - chr4_1:73672048-73672067 None:intergenic 50.0%
CTCATGGATGAAGCTGGAAG+AGG - chr4_1:73672052-73672071 None:intergenic 50.0%
! GGGTCTGTGGACTCAGTTTT+GGG + chr4_1:73672271-73672290 Msa0571140:CDS 50.0%
GCCAAGCTGAGAGAGTTCCA+AGG - chr4_1:73668872-73668891 None:intergenic 55.0%
GGTTCTGCCAGCAATGTAGC+AGG + chr4_1:73669680-73669699 Msa0571140:CDS 55.0%
!! ATCAAGGATGGTGGGCAGCA+TGG - chr4_1:73670631-73670650 None:intergenic 55.0%
GCTGCCCACCATCCTTGATT+TGG + chr4_1:73670632-73670651 Msa0571140:intron 55.0%
TTCACAGTGGCTGCTGCTGT+TGG - chr4_1:73672022-73672041 None:intergenic 55.0%
GTGCGACTCATGGATGAAGC+TGG - chr4_1:73672058-73672077 None:intergenic 55.0%
CCTGCTAAACGTGCGACTCA+TGG - chr4_1:73672068-73672087 None:intergenic 55.0%
CCATGAGTCGCACGTTTAGC+AGG + chr4_1:73672065-73672084 Msa0571140:CDS 55.0%
TGACCATAGCTTGGGGTCTG+TGG + chr4_1:73672258-73672277 Msa0571140:CDS 55.0%
AGTCCACAGACCCCAAGCTA+TGG - chr4_1:73672264-73672283 None:intergenic 55.0%
! GGGGTCTGTGGACTCAGTTT+TGG + chr4_1:73672270-73672289 Msa0571140:CDS 55.0%
! AATGCACTTGGCTGGCTGGC+TGG + chr4_1:73670585-73670604 Msa0571140:intron 60.0%
GGTGGGCAGCATGGTGAGTG+AGG - chr4_1:73670622-73670641 None:intergenic 65.0%
CAGTGGCTGCTGCTGTTGGC+TGG - chr4_1:73672018-73672037 None:intergenic 65.0%
! CACTTGGCTGGCTGGCTGGC+TGG + chr4_1:73670589-73670608 Msa0571140:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 73668234 73672566 73668234 ID=Msa0571140;Name=Msa0571140
chr4_1 mRNA 73668234 73672566 73668234 ID=Msa0571140-mRNA-1;Parent=Msa0571140;Name=Msa0571140-mRNA-1;_AED=0.16;_eAED=0.16;_QI=301|1|1|1|0.66|0.5|4|158|390
chr4_1 exon 73668234 73668523 73668234 ID=Msa0571140-mRNA-1:exon:25260;Parent=Msa0571140-mRNA-1
chr4_1 exon 73669257 73669701 73669257 ID=Msa0571140-mRNA-1:exon:25261;Parent=Msa0571140-mRNA-1
chr4_1 exon 73670312 73670445 73670312 ID=Msa0571140-mRNA-1:exon:25262;Parent=Msa0571140-mRNA-1
chr4_1 exon 73671804 73672566 73671804 ID=Msa0571140-mRNA-1:exon:25263;Parent=Msa0571140-mRNA-1
chr4_1 five_prime_UTR 73668234 73668523 73668234 ID=Msa0571140-mRNA-1:five_prime_utr;Parent=Msa0571140-mRNA-1
chr4_1 five_prime_UTR 73669257 73669267 73669257 ID=Msa0571140-mRNA-1:five_prime_utr;Parent=Msa0571140-mRNA-1
chr4_1 CDS 73669268 73669701 73669268 ID=Msa0571140-mRNA-1:cds;Parent=Msa0571140-mRNA-1
chr4_1 CDS 73670312 73670445 73670312 ID=Msa0571140-mRNA-1:cds;Parent=Msa0571140-mRNA-1
chr4_1 CDS 73671804 73672408 73671804 ID=Msa0571140-mRNA-1:cds;Parent=Msa0571140-mRNA-1
chr4_1 three_prime_UTR 73672409 73672566 73672409 ID=Msa0571140-mRNA-1:three_prime_utr;Parent=Msa0571140-mRNA-1
Gene Sequence

>Msa0571140

ATGGAGTGGAGTAATTTGAAAGCACCTTCATGGGATTTAACTGAAATGGATCAAGGAACCTTAAACAACATAGAAACAATGGATGGTTCAATTAGGAGGTTTGGAGATTACAGAACAAAAGGAGAATTTTCTGTTGATTTGAAGCTTGGCCATGTTGGAAATTCTAGCACTGAATCAGGGCTTACAAAGTCCAAAGATGTTGGTGGATTTACCAAAATGACATCTTCATCATCTTCAACTTCAGGGTCATCTAAGAGAGCTAGAGCTATCAACAATGGGACTCAGATAGTTTCATGTCTTGTGGATGGTTGTCAAGCTGATCTTAGTAACTGTAGAGACTATCATAGACGCCATAAGGTATGTGAACTTCATTCCAAGACTGCACAGGTCACAATTGGTGGACATAAGCAAAGGTTCTGCCAGCAATGTAGCAGGTTCCATGCTCTAGAGGAATTTGATGAAGGAAAGAGGAGCTGTAGGAAACGCTTAGATGGTCACAACCGACGGAGAAGAAAACCACAACCAGAACCTATTACTCGAAGTAGTAGCTTTTTGTCCAATTACCAAGGAACCCAATTGCTACCATTCTCAAGTTCACATGTATACCCTTCTACTGCTATGATGAACCCTACTTGGGTTGGAGGAGATGTTAGGCTCCATAGCCACAATCAACACCAACAAATGCACCATCTGGTTGATAAACAAGACCTTTTTCTTGGAACAACATCTTCAACCAGCAGCTACAAAGAAGGGAAACAAGTCTCATTCATACAAAATAACCAGCCAACAGCAGCAGCCACTGTGAACAACCAACCTCTTCCAGCTTCATCCATGAGTCGCACGTTTAGCAGGACCAATCCTTTTTCAGAAAGATACAAAATGTTTTGTGACAACAACACTTCTTGTGCTCTCTCTCTTCTGTCATCACCAGTACCACAAACACATGATCATCCTGAAAATGGATTGAATCAGATGGTGAATACTCACTCATCTTTTATGCAACCCTTAGGCTTGAGTTTGCATGACCATAGCTTGGGGTCTGTGGACTCAGTTTTGGGTTCAAATGATCAGAGTGGTCATTGTTCCTCAATTTATAACTTGGGTTCTAGTGAATCCCATTCTCAGGGGAATAATAATGAAGCTTCTCCATTATTTCCTTTTCAATGGGATTAG
Protein sequence

>Msa0571140

MEWSNLKAPSWDLTEMDQGTLNNIETMDGSIRRFGDYRTKGEFSVDLKLGHVGNSSTESGLTKSKDVGGFTKMTSSSSSTSGSSKRARAINNGTQIVSCLVDGCQADLSNCRDYHRRHKVCELHSKTAQVTIGGHKQRFCQQCSRFHALEEFDEGKRSCRKRLDGHNRRRRKPQPEPITRSSSFLSNYQGTQLLPFSSSHVYPSTAMMNPTWVGGDVRLHSHNQHQQMHHLVDKQDLFLGTTSSTSSYKEGKQVSFIQNNQPTAAATVNNQPLPASSMSRTFSRTNPFSERYKMFCDNNTSCALSLLSSPVPQTHDHPENGLNQMVNTHSSFMQPLGLSLHDHSLGSVDSVLGSNDQSGHCSSIYNLGSSESHSQGNNNEASPLFPFQWD*