AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0844440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0844440 MtrunA17_Chr4g0014311 63.386 254 74 2 139 373 32 285 3.13e-108 318
Msa0844440 MtrunA17_Chr8g0365271 53.403 191 80 2 188 372 5 192 1.49e-62 199
Msa0844440 MtrunA17_Chr5g0444831 51.366 183 80 2 196 372 1 180 4.13e-55 179
Msa0844440 MtrunA17_Chr7g0270411 55.970 134 56 2 241 374 1 131 1.58e-36 129
Msa0844440 MtrunA17_Chr3g0138341 64.634 82 28 1 188 268 20 101 1.08e-31 117
Msa0844440 MtrunA17_Chr1g0212881 41.935 93 44 2 196 282 1 89 5.38e-20 84.7
Msa0844440 MtrunA17_Chr3g0092621 68.116 69 18 1 2 66 7 75 1.36e-19 85.1
Msa0844440 MtrunA17_Chr3g0096071 62.745 51 19 0 138 188 173 223 1.12e-18 84.3
Msa0844440 MtrunA17_Chr4g0020981 64.634 82 11 1 3 66 43 124 3.78e-17 79.3
Msa0844440 MtrunA17_Chr2g0300061 46.970 66 35 0 221 286 7 72 4.93e-17 75.5
Msa0844440 MtrunA17_Chr6g0452791 68.966 58 13 1 2 54 7 64 6.56e-17 77.8
Msa0844440 MtrunA17_Chr8g0356931 89.474 38 4 0 29 66 2 39 3.93e-16 73.2
Msa0844440 MtrunA17_Chr4g0019691 25.543 184 127 5 124 299 4 185 1.91e-13 68.2
Msa0844440 MtrunA17_Chr4g0003711 42.647 68 23 1 136 203 6 57 7.35e-12 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 155 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATGCGTTTCAGACTTATT+TGG 0.146279 5_4:-22875532 Msa0844440:three_prime_UTR
TTTCTGCTCTGGTTGCATTT+TGG 0.188487 5_4:+22876662 None:intergenic
ATCATAATACCACCCGTATT+CGG 0.282063 5_4:+22876739 None:intergenic
CATTGTGAAGCGGTTGGATT+TGG 0.295757 5_4:+22879583 None:intergenic
AAAGATGATTCTGATGTTCT+TGG 0.302736 5_4:-22875805 Msa0844440:CDS
GTTCAGGTTCGTGGAGGTTT+AGG 0.322536 5_4:-22877989 Msa0844440:CDS
ATTTCTGCTTCACGTGGAAT+TGG 0.322550 5_4:-22879095 Msa0844440:CDS
TTCCCAGACCCCTTGCTACT+TGG 0.328715 5_4:+22875841 None:intergenic
AATGCGTTTCAGACTTATTT+GGG 0.333888 5_4:-22875531 Msa0844440:three_prime_UTR
TCATAATACCACCCGTATTC+GGG 0.362798 5_4:+22876740 None:intergenic
TCGCCACACTTTAAGATATT+CGG 0.372777 5_4:+22878086 None:intergenic
GTCCAGGTGATGGACAATAC+TGG 0.379415 5_4:-22876518 Msa0844440:CDS
CGGGAAGCAGAAGGGGCAAC+AGG 0.385690 5_4:+22879407 None:intergenic
AGACCTTTCACCATCATCAT+TGG 0.386071 5_4:+22875780 None:intergenic
CTTAATCCTCCCAGCACATT+TGG 0.386375 5_4:+22876709 None:intergenic
GGCGAAATTACGGTGTTAAA+CGG 0.386408 5_4:-22876247 Msa0844440:CDS
AATTTCATGCGGTGCCGAAT+CGG 0.387663 5_4:-22879639 Msa0844440:five_prime_UTR
CTTGGGCTTCAATTAGATCT+TGG 0.389032 5_4:+22876456 None:intergenic
GGTGAATCTTCATTTCGTTC+AGG 0.390128 5_4:-22878005 Msa0844440:CDS
AAGCGGTTGGATTTGGTTTG+TGG 0.397396 5_4:+22879590 None:intergenic
TCTTAGTAGCACACCTCCTT+GGG 0.397525 5_4:+22876013 None:intergenic
CTTCATTTCGTTCAGGTTCG+TGG 0.400702 5_4:-22877998 Msa0844440:CDS
CAATTTATGATACCTGGCCT+TGG 0.402499 5_4:+22876438 None:intergenic
TCTCTTGCGGCCTCCTCTCT+AGG 0.408660 5_4:-22879439 Msa0844440:five_prime_UTR
TTGGCACAACATTTCTGCTC+TGG 0.411793 5_4:+22876651 None:intergenic
AATTTATGATACCTGGCCTT+GGG 0.412654 5_4:+22876439 None:intergenic
TTCTGAATGACAGAATGTTC+AGG 0.414219 5_4:-22875929 Msa0844440:intron
GTCTTAGTAGCACACCTCCT+TGG 0.419814 5_4:+22876012 None:intergenic
TGGGAAAACAATGCTCTTCA+AGG 0.421517 5_4:-22876303 Msa0844440:CDS
CTTCACGGCTGGCGAAATTA+CGG 0.424690 5_4:-22876257 Msa0844440:CDS
ATCGTACTGGCGCATGGCGT+TGG 0.435610 5_4:+22879373 None:intergenic
GACGCAACGGAACGCATGGC+AGG 0.437208 5_4:-22879542 Msa0844440:five_prime_UTR
CTCATCAGTGTTCATCGTAC+TGG 0.438756 5_4:+22879360 None:intergenic
GGTTTGTGGTGGTTCAGATC+TGG 0.440308 5_4:+22879604 None:intergenic
CCACACCTGACATTCTCTAT+AGG 0.441242 5_4:+22877908 None:intergenic
ACACCAAGTAGCAAGGGGTC+TGG 0.441582 5_4:-22875844 Msa0844440:CDS
GGCACCGCATGAAATTGAAA+TGG 0.443338 5_4:+22879646 None:intergenic
ATCAAAACATTCAGATCAGT+TGG 0.444188 5_4:+22876326 None:intergenic
TGAAAATTGATTCACGCGCA+TGG 0.445559 5_4:-22879798 Msa0844440:five_prime_UTR
TGCCGCGACGATTTCCTCTC+AGG 0.445854 5_4:-22879289 Msa0844440:intron
ACAAATGGTAACTTGCTTCA+CGG 0.447150 5_4:-22876272 Msa0844440:CDS
TTCAAGGTTGAGATTACAAA+TGG 0.451087 5_4:-22876287 Msa0844440:CDS
CACCAAGTAGCAAGGGGTCT+GGG 0.452135 5_4:-22875843 Msa0844440:CDS
CGGTCAATTCGACGACGGCC+AGG 0.453761 5_4:+22879482 None:intergenic
CAGTGGAGTTCGACGTGGTT+GGG 0.458954 5_4:-22879069 Msa0844440:CDS
TGGGAGGTGGATAGAGAAAG+AGG 0.467832 5_4:+22879666 None:intergenic
TGTGCAGGGAAATTGATGTT+GGG 0.469561 5_4:-22877947 Msa0844440:CDS
TTGGAAAATACAGGTTAGAA+TGG 0.470024 5_4:+22879737 None:intergenic
TGTGGGATAGAGCCCGAATA+CGG 0.474793 5_4:-22876752 Msa0844440:CDS
GGGAGGATTAAGATTATCTC+TGG 0.481906 5_4:-22876698 Msa0844440:CDS
TTCAACCTATAGAGAATGTC+AGG 0.483422 5_4:-22877913 Msa0844440:intron
AGATCTTGCCTTGACACAAA+AGG 0.487628 5_4:-22876044 Msa0844440:CDS
ATTATTCTAGCATCTATATG+TGG 0.492263 5_4:-22876770 Msa0844440:CDS
ATGGAAGAGAGAAGAGATAG+AGG 0.494928 5_4:+22879756 None:intergenic
TTGTGCAGGGAAATTGATGT+TGG 0.495586 5_4:-22877948 Msa0844440:CDS
GTTCGTGGAGGTTTAGGATG+AGG 0.499779 5_4:-22877983 Msa0844440:CDS
TCCAGACAAAGGACAAAAGC+TGG 0.503610 5_4:+22875661 None:intergenic
GCACCGCATGAAATTGAAAT+GGG 0.504608 5_4:+22879647 None:intergenic
GAAAATTGATTCACGCGCAT+GGG 0.507534 5_4:-22879797 Msa0844440:five_prime_UTR
CAGGTGCAGTTGCTTGAAGC+TGG 0.507756 5_4:-22875910 Msa0844440:CDS
GTGTATGCTGCCCTACCACC+TGG 0.507983 5_4:+22875863 None:intergenic
GAGAAAGAGGCCGGTGAACA+TGG 0.508092 5_4:+22879707 None:intergenic
AAGCAGAAGGGGCAACAGGA+CGG 0.511536 5_4:+22879411 None:intergenic
CCCACAATATGTTCATCAAA+CGG 0.511937 5_4:+22878026 None:intergenic
CAGGTTTAAGCTGCATGTCC+AGG 0.512446 5_4:-22876534 Msa0844440:CDS
CCGTTTGATGAACATATTGT+GGG 0.513752 5_4:-22878026 Msa0844440:CDS
ACGTAAATTGACAGAGAAAG+AGG 0.515929 5_4:+22879694 None:intergenic
CCACGTGAAGCAGAAATGAA+TGG 0.516090 5_4:+22879101 None:intergenic
GGTTACGGTGTTCTCCGATT+CGG 0.517289 5_4:+22879625 None:intergenic
TGGTGGTTCAGATCTGGTTA+CGG 0.517410 5_4:+22879610 None:intergenic
TCTAATTGAAGCCCAAGGCC+AGG 0.520584 5_4:-22876450 Msa0844440:intron
GTAGCAAGGGGTCTGGGAAG+AGG 0.521293 5_4:-22875837 Msa0844440:CDS
ATGGTAACTTGCTTCACGGC+TGG 0.521942 5_4:-22876268 Msa0844440:CDS
GGCGTTGGTGTTGAATGAAC+GGG 0.523236 5_4:+22879388 None:intergenic
CCATTCATTTCTGCTTCACG+TGG 0.527292 5_4:-22879101 Msa0844440:CDS
CGTACTTCTCCTCTCATCCC+TGG 0.530115 5_4:-22879500 Msa0844440:five_prime_UTR
GGAGGTGCCTTGGAAAATAC+AGG 0.531993 5_4:+22879728 None:intergenic
GAAGGACGCAACGGAACGCA+TGG 0.533250 5_4:-22879546 Msa0844440:five_prime_UTR
GATGCCTGCACCAAATGTGC+TGG 0.534685 5_4:-22876719 Msa0844440:CDS
TTCCTCCATTGTGAAGCGGT+TGG 0.540644 5_4:+22879577 None:intergenic
CAAGGCACCTCCATGTTCAC+CGG 0.542269 5_4:-22879717 Msa0844440:five_prime_UTR
CATGAAATTGAAATGGGAGG+TGG 0.545925 5_4:+22879653 None:intergenic
TCAAAACATTCAGATCAGTT+GGG 0.549224 5_4:+22876327 None:intergenic
CTGATGTGAACCAGGTGGTA+GGG 0.549634 5_4:-22875873 Msa0844440:CDS
ACAGTGGAGTTCGACGTGGT+TGG 0.549671 5_4:-22879070 Msa0844440:CDS
GTTTAGGATGAGGATTTCGA+AGG 0.549992 5_4:-22877973 Msa0844440:CDS
AAATTCACAGCTGACGGCGG+CGG 0.551015 5_4:+22879462 None:intergenic
TGTTAAGCGTCATGATCTGA+AGG 0.551978 5_4:-22876192 Msa0844440:intron
CGGTTGGATTTGGTTTGTGG+TGG 0.553183 5_4:+22879593 None:intergenic
TCCGTTTGATGAACATATTG+TGG 0.557305 5_4:-22878027 Msa0844440:CDS
CGACGACGGCCAGGGATGAG+AGG 0.560063 5_4:+22879491 None:intergenic
TTGAATGAACGGGAAGCAGA+AGG 0.562723 5_4:+22879398 None:intergenic
CCTCCCAGCACATTTGGTGC+AGG 0.563021 5_4:+22876715 None:intergenic
TCTGATGTGAACCAGGTGGT+AGG 0.563301 5_4:-22875874 Msa0844440:CDS
CGGTGAACATGGAGGTGCCT+TGG 0.565300 5_4:+22879718 None:intergenic
CGCAACGGAACGCATGGCAG+GGG 0.566023 5_4:-22879540 Msa0844440:five_prime_UTR
GTGGGATAGAGCCCGAATAC+GGG 0.570466 5_4:-22876751 Msa0844440:CDS
GGTCAATTCGACGACGGCCA+GGG 0.572569 5_4:+22879483 None:intergenic
AAGAGAAAATTCACAGCTGA+CGG 0.572926 5_4:+22879456 None:intergenic
ACCCAGTATTGTCCATCACC+TGG 0.576830 5_4:+22876516 None:intergenic
TCCAGGTGATGGACAATACT+GGG 0.577189 5_4:-22876517 Msa0844440:CDS
GAGCAAGTCTGATGTGAACC+AGG 0.580414 5_4:-22875881 Msa0844440:CDS
CAGCATACACCAAGTAGCAA+GGG 0.580487 5_4:-22875850 Msa0844440:CDS
AAATCGTCGCGGCAAGTGCG+AGG 0.582589 5_4:+22879298 None:intergenic
ACGACAACGATCAGCAACAT+TGG 0.583076 5_4:+22879336 None:intergenic
CCTCCCATTTCAATTTCATG+CGG 0.584893 5_4:-22879650 Msa0844440:five_prime_UTR
CAAGGCAAGATCTATGTCAC+AGG 0.585897 5_4:+22876054 None:intergenic
ACGCAACGGAACGCATGGCA+GGG 0.587069 5_4:-22879541 Msa0844440:five_prime_UTR
ACGTTTATATTGAATCGCAA+AGG 0.587815 5_4:-22878056 Msa0844440:CDS
GTGTTCATCGTACTGGCGCA+TGG 0.588418 5_4:+22879367 None:intergenic
TAAGCTGCATGTCCAGGTGA+TGG 0.589013 5_4:-22876528 Msa0844440:CDS
AATCGTCGCGGCAAGTGCGA+GGG 0.589527 5_4:+22879299 None:intergenic
TTATTCTAGCATCTATATGT+GGG 0.589921 5_4:-22876769 Msa0844440:CDS
AGCACGCGCGAAGGACGCAA+CGG 0.589931 5_4:-22879555 Msa0844440:five_prime_UTR
GTGCTTCCTCCATTGTGAAG+CGG 0.596488 5_4:+22879573 None:intergenic
GTTCTTGGCTCCAATGATGA+TGG 0.601722 5_4:-22875790 Msa0844440:CDS
GCAGCATACACCAAGTAGCA+AGG 0.602341 5_4:-22875851 Msa0844440:CDS
TGAATGAACGGGAAGCAGAA+GGG 0.604005 5_4:+22879399 None:intergenic
GAATGAACGGGAAGCAGAAG+GGG 0.604185 5_4:+22879400 None:intergenic
CAAAAGAAGTCTGAAACAGA+TGG 0.608297 5_4:+22875607 None:intergenic
ATCCAACCGCTTCACAATGG+AGG 0.612663 5_4:-22879579 Msa0844440:five_prime_UTR
GATGCTTGATGCAAAGTAGT+CGG 0.614718 5_4:-22875715 Msa0844440:exon
CAAATCCAACCGCTTCACAA+TGG 0.615137 5_4:-22879582 Msa0844440:five_prime_UTR
GGATTAAGATTATCTCTGGA+AGG 0.616107 5_4:-22876694 Msa0844440:CDS
CATTTCGTTCAGGTTCGTGG+AGG 0.623381 5_4:-22877995 Msa0844440:CDS
TGGCGTTGGTGTTGAATGAA+CGG 0.624106 5_4:+22879387 None:intergenic
AAATTGACAGAGAAAGAGGC+CGG 0.627806 5_4:+22879698 None:intergenic
ATGCCTGCACCAAATGTGCT+GGG 0.628308 5_4:-22876718 Msa0844440:CDS
GCTCCAATGATGATGGTGAA+AGG 0.630146 5_4:-22875783 Msa0844440:CDS
AATGGAGGAAGCACGCGCGA+AGG 0.630455 5_4:-22879564 Msa0844440:five_prime_UTR
ACAAAAGGAATCTTTGCCCA+AGG 0.631825 5_4:-22876029 Msa0844440:CDS
AGAGCAGAAATGTTGTGCCA+AGG 0.637098 5_4:-22876649 Msa0844440:intron
AGAAGTCTGAAACAGATGGT+CGG 0.638080 5_4:+22875611 None:intergenic
CCACACTTTAAGATATTCGG+CGG 0.641460 5_4:+22878089 None:intergenic
GACGGAGAGACCTAGAGAGG+AGG 0.642208 5_4:+22879429 None:intergenic
AAACGAATTGATCCAGACAA+AGG 0.645473 5_4:+22875650 None:intergenic
CCGCCGAATATCTTAAAGTG+TGG 0.646987 5_4:-22878089 Msa0844440:CDS
AGAAAATTCACAGCTGACGG+CGG 0.650656 5_4:+22879459 None:intergenic
CCGCATGAAATTGAAATGGG+AGG 0.655758 5_4:+22879650 None:intergenic
TCACGTGGAATTGGAGACAG+TGG 0.656716 5_4:-22879086 Msa0844440:CDS
CAAGATCTAATTGAAGCCCA+AGG 0.659113 5_4:-22876455 Msa0844440:CDS
AGCATACACCAAGTAGCAAG+GGG 0.668369 5_4:-22875849 Msa0844440:CDS
TGAGAGGAGAAGTACGACTG+TGG 0.671410 5_4:+22879507 None:intergenic
CAGGACGGAGAGACCTAGAG+AGG 0.673163 5_4:+22879426 None:intergenic
AAAGGAATCTTTGCCCAAGG+AGG 0.679889 5_4:-22876026 Msa0844440:intron
AGCGATAACAACTACCTGAG+AGG 0.682072 5_4:+22879275 None:intergenic
TTGGGATGCGAAAGTGACAG+AGG 0.696852 5_4:-22879051 Msa0844440:CDS
GGATAGAGCCCGAATACGGG+TGG 0.701139 5_4:-22876748 Msa0844440:CDS
GGCGGCGGTCAATTCGACGA+CGG 0.705866 5_4:+22879477 None:intergenic
AAAGAGGCCGGTGAACATGG+AGG 0.711640 5_4:+22879710 None:intergenic
GGAGACAGTGGAGTTCGACG+TGG 0.716516 5_4:-22879074 Msa0844440:CDS
GAAATGTGTCAAGATTGAGA+AGG 0.735343 5_4:-22875737 Msa0844440:CDS
CAAGTCTGATGTGAACCAGG+TGG 0.735501 5_4:-22875878 Msa0844440:CDS
TACCTGAGAGGAAATCGTCG+CGG 0.757989 5_4:+22879287 None:intergenic
CCTGCACCAAATGTGCTGGG+AGG 0.764282 5_4:-22876715 Msa0844440:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTACATATTTAAATTAC+TGG - chr5_4:22876558-22876577 Msa0844440:intron 10.0%
!!! ATTAGTTTTTTTTTTTGAAT+CGG + chr5_4:22878269-22878288 None:intergenic 10.0%
!! ATTCAAAAAAAAAAACTAAT+TGG - chr5_4:22878269-22878288 Msa0844440:intron 10.0%
!! AAAAAGAAATTGTTTCAAAT+AGG + chr5_4:22876400-22876419 None:intergenic 15.0%
!!! TTTATATGAAACTACATTTT+TGG - chr5_4:22876651-22876670 Msa0844440:CDS 15.0%
!! AAACTTATCAACTTAAAAAA+AGG + chr5_4:22877028-22877047 None:intergenic 15.0%
!! CATTCATATTAAAAAACATA+CGG + chr5_4:22877147-22877166 None:intergenic 15.0%
!! AATATCGTAATTGAATAATA+AGG + chr5_4:22877207-22877226 None:intergenic 15.0%
!! TTATTATTCAATTACGATAT+TGG - chr5_4:22877206-22877225 Msa0844440:intron 15.0%
!! AAACTAACAAAGTAAAAAAA+CGG + chr5_4:22877824-22877843 None:intergenic 15.0%
!!! AAAACTAATTGGTTTATTTA+AGG - chr5_4:22878280-22878299 Msa0844440:intron 15.0%
!!! ATCAATTCGTTTTTAATTAT+AGG - chr5_4:22879699-22879718 Msa0844440:five_prime_UTR 15.0%
!! AAAAATTGAGTTTCTGATTT+AGG + chr5_4:22876719-22876738 None:intergenic 20.0%
!! TGTGAGTTGTATTAATTTAT+GGG + chr5_4:22876873-22876892 None:intergenic 20.0%
!! ATGTGAGTTGTATTAATTTA+TGG + chr5_4:22876874-22876893 None:intergenic 20.0%
!!! ACTGATTCAAATTTTTTTGT+AGG - chr5_4:22876975-22876994 Msa0844440:intron 20.0%
!! ATGTAGAATTGTTATATTGA+TGG + chr5_4:22877177-22877196 None:intergenic 20.0%
!! ATAAAAATTACCATTGATGA+AGG + chr5_4:22877580-22877599 None:intergenic 20.0%
!! AAATGTAAGAATGTATGAAA+TGG + chr5_4:22877712-22877731 None:intergenic 20.0%
!! ATTATTGACACTTAAATTGA+TGG + chr5_4:22877882-22877901 None:intergenic 20.0%
!!! TAATGGTTAGTTATATATGT+TGG - chr5_4:22878333-22878352 Msa0844440:intron 20.0%
!! CATATAACTAATGAAATGAA+AGG + chr5_4:22878746-22878765 None:intergenic 20.0%
!! TATGATTGTTTATAAACGTT+CGG - chr5_4:22878762-22878781 Msa0844440:intron 20.0%
!!! TTTTGATTACTATAGATATG+TGG - chr5_4:22879179-22879198 Msa0844440:intron 20.0%
!!! GAAATAGATTAGTTATACAA+TGG + chr5_4:22879392-22879411 None:intergenic 20.0%
!!! TGAATTTAGTTTACTCTTTT+TGG - chr5_4:22879768-22879787 Msa0844440:five_prime_UTR 20.0%
! ATTGTTTCAAATAGGTAAAG+TGG + chr5_4:22876392-22876411 None:intergenic 25.0%
! AAAGTTATGTTTCATACACT+TGG + chr5_4:22876680-22876699 None:intergenic 25.0%
! GTTATGTTTCATACAATTGA+AGG + chr5_4:22876746-22876765 None:intergenic 25.0%
! TTATTTGTTTGTCTCATAAC+TGG - chr5_4:22876893-22876912 Msa0844440:intron 25.0%
! AAATTGCGGCAAAAAAAAAA+TGG + chr5_4:22876934-22876953 None:intergenic 25.0%
! ACAAAAACTTCTCTAAATTG+CGG + chr5_4:22876948-22876967 None:intergenic 25.0%
!!! GTTTTTTTTTCCTTCATCAA+TGG - chr5_4:22877567-22877586 Msa0844440:intron 25.0%
! CTAAATTGACAAACAAACAT+TGG + chr5_4:22877792-22877811 None:intergenic 25.0%
! CAATGTTTGTTTGTCAATTT+AGG - chr5_4:22877790-22877809 Msa0844440:intron 25.0%
!! CTGCATATAGATTCATATTT+TGG - chr5_4:22877846-22877865 Msa0844440:intron 25.0%
!! ACTAATTGGTTTATTTAAGG+AGG - chr5_4:22878283-22878302 Msa0844440:intron 25.0%
! TGCATATTGAAACATGTTAA+TGG - chr5_4:22878316-22878335 Msa0844440:intron 25.0%
! TGAATTGGAAACTAATTAAC+AGG - chr5_4:22878406-22878425 Msa0844440:intron 25.0%
! GTATGTATGATCTAATTAAC+AGG - chr5_4:22878446-22878465 Msa0844440:intron 25.0%
! TATATGTTATGATCAAAGCA+AGG + chr5_4:22878520-22878539 None:intergenic 25.0%
! ATTATTCTAGCATCTATATG+TGG - chr5_4:22878568-22878587 Msa0844440:intron 25.0%
! TTATTCTAGCATCTATATGT+GGG - chr5_4:22878569-22878588 Msa0844440:intron 25.0%
TTGGAAAATACAGGTTAGAA+TGG + chr5_4:22875604-22875623 None:intergenic 30.0%
! ATTCTAACCTGTATTTTCCA+AGG - chr5_4:22875603-22875622 Msa0844440:three_prime_UTR 30.0%
AAACGATTCATATCTCAACA+TGG - chr5_4:22876468-22876487 Msa0844440:CDS 30.0%
!!! CGTAATCATGAGTTTTTTGT+TGG - chr5_4:22876805-22876824 Msa0844440:intron 30.0%
!!! ATGAGTTTTTTGTTGGTTGT+TGG - chr5_4:22876812-22876831 Msa0844440:intron 30.0%
ACGTTTATATTGAATCGCAA+AGG - chr5_4:22877282-22877301 Msa0844440:intron 30.0%
GCTATAATATACCAAAAGGA+AGG + chr5_4:22878082-22878101 None:intergenic 30.0%
TGAGGCTATAATATACCAAA+AGG + chr5_4:22878086-22878105 None:intergenic 30.0%
TAATAGATATTGAGTGCCTT+TGG - chr5_4:22878138-22878157 Msa0844440:intron 30.0%
ACGAAAAGAGCAAATACAAA+AGG + chr5_4:22878194-22878213 None:intergenic 30.0%
TTGGTTTATTTAAGGAGGAT+AGG - chr5_4:22878288-22878307 Msa0844440:intron 30.0%
AAAAACACAAACAGTAAGAG+AGG + chr5_4:22878373-22878392 None:intergenic 30.0%
!! CTTACTGTTTGTGTTTTTGT+TGG - chr5_4:22878375-22878394 Msa0844440:intron 30.0%
ATCATGAATAGATCAAACAC+TGG + chr5_4:22878484-22878503 None:intergenic 30.0%
ATACATTGGTCATTATAGCA+CGG + chr5_4:22878933-22878952 None:intergenic 30.0%
TCAAAACATTCAGATCAGTT+GGG + chr5_4:22879014-22879033 None:intergenic 30.0%
ATCAAAACATTCAGATCAGT+TGG + chr5_4:22879015-22879034 None:intergenic 30.0%
!!! ACTGATCTGAATGTTTTGAT+TGG - chr5_4:22879015-22879034 Msa0844440:intron 30.0%
!!! CTGATCTGAATGTTTTGATT+GGG - chr5_4:22879016-22879035 Msa0844440:intron 30.0%
TTCAAGGTTGAGATTACAAA+TGG - chr5_4:22879051-22879070 Msa0844440:CDS 30.0%
TCAGAATGACAAAATAGAAG+AGG + chr5_4:22879224-22879243 None:intergenic 30.0%
AAAGATGATTCTGATGTTCT+TGG - chr5_4:22879533-22879552 Msa0844440:five_prime_UTR 30.0%
!!! ACTTCTTTTGTTGCTTTCTA+TGG - chr5_4:22879744-22879763 Msa0844440:five_prime_UTR 30.0%
TAATGCGTTTCAGACTTATT+TGG - chr5_4:22879806-22879825 Msa0844440:five_prime_UTR 30.0%
AATGCGTTTCAGACTTATTT+GGG - chr5_4:22879807-22879826 Msa0844440:five_prime_UTR 30.0%
ACGTAAATTGACAGAGAAAG+AGG + chr5_4:22875647-22875666 None:intergenic 35.0%
AAGAGAAAATTCACAGCTGA+CGG + chr5_4:22875885-22875904 None:intergenic 35.0%
AGAGGAAAAATAGTGAGAGA+GGG + chr5_4:22876350-22876369 None:intergenic 35.0%
GTTTCAAATAGGTAAAGTGG+TGG + chr5_4:22876389-22876408 None:intergenic 35.0%
TCACTTTCTCAACGCAATTT+AGG + chr5_4:22876444-22876463 None:intergenic 35.0%
GCATTCTGTTTATTTCAGCT+CGG - chr5_4:22876580-22876599 Msa0844440:intron 35.0%
! CACTTTGAGCTTGACATTTT+GGG - chr5_4:22876844-22876863 Msa0844440:intron 35.0%
ATAGAAGCAAGCAACAAAGT+GGG + chr5_4:22877109-22877128 None:intergenic 35.0%
!! TCGCCACACTTTAAGATATT+CGG + chr5_4:22877255-22877274 None:intergenic 35.0%
TCCGTTTGATGAACATATTG+TGG - chr5_4:22877311-22877330 Msa0844440:intron 35.0%
CCCACAATATGTTCATCAAA+CGG + chr5_4:22877315-22877334 None:intergenic 35.0%
CCGTTTGATGAACATATTGT+GGG - chr5_4:22877312-22877331 Msa0844440:intron 35.0%
TTCAACCTATAGAGAATGTC+AGG - chr5_4:22877425-22877444 Msa0844440:intron 35.0%
TGGACTTTAATTGAATTGCG+TGG - chr5_4:22877450-22877469 Msa0844440:intron 35.0%
!! TCTCAGCAATGATGTTTTTG+CGG - chr5_4:22877606-22877625 Msa0844440:intron 35.0%
GTAAGAATGTATGAAATGGC+AGG + chr5_4:22877708-22877727 None:intergenic 35.0%
!! TTTGATTTGTGAAAGAAGCG+TGG + chr5_4:22877740-22877759 None:intergenic 35.0%
!! TTGTGTTTTTGTTGGATTGC+AGG - chr5_4:22878383-22878402 Msa0844440:intron 35.0%
ATCATAATACCACCCGTATT+CGG + chr5_4:22878602-22878621 None:intergenic 35.0%
GGATTAAGATTATCTCTGGA+AGG - chr5_4:22878644-22878663 Msa0844440:intron 35.0%
AAACGTTCGGATATTCGATA+TGG - chr5_4:22878775-22878794 Msa0844440:intron 35.0%
! ATATTCGATATGGTTTGCAC+AGG - chr5_4:22878785-22878804 Msa0844440:intron 35.0%
! AATTTATGATACCTGGCCTT+GGG + chr5_4:22878902-22878921 None:intergenic 35.0%
GTTGTGCAATTTATGATACC+TGG + chr5_4:22878909-22878928 None:intergenic 35.0%
CGCAAGACAAACAAATACAT+TGG + chr5_4:22878947-22878966 None:intergenic 35.0%
!! ACAAATGGTAACTTGCTTCA+CGG - chr5_4:22879066-22879085 Msa0844440:CDS 35.0%
! CAAAGATTCCTTTTGTGTCA+AGG + chr5_4:22879305-22879324 None:intergenic 35.0%
TAACATTGCACATGCAGAAA+AGG + chr5_4:22879358-22879377 None:intergenic 35.0%
TTCTGAATGACAGAATGTTC+AGG - chr5_4:22879409-22879428 Msa0844440:five_prime_UTR 35.0%
GAAATGTGTCAAGATTGAGA+AGG - chr5_4:22879601-22879620 Msa0844440:five_prime_UTR 35.0%
AAACGAATTGATCCAGACAA+AGG + chr5_4:22879691-22879710 None:intergenic 35.0%
! CAAAAGAAGTCTGAAACAGA+TGG + chr5_4:22879734-22879753 None:intergenic 35.0%
! TGCGCGTGAATCAATTTTCA+AGG + chr5_4:22875540-22875559 None:intergenic 40.0%
! TGAAAATTGATTCACGCGCA+TGG - chr5_4:22875540-22875559 Msa0844440:three_prime_UTR 40.0%
! GAAAATTGATTCACGCGCAT+GGG - chr5_4:22875541-22875560 Msa0844440:three_prime_UTR 40.0%
ATGGAAGAGAGAAGAGATAG+AGG + chr5_4:22875585-22875604 None:intergenic 40.0%
AAATTGACAGAGAAAGAGGC+CGG + chr5_4:22875643-22875662 None:intergenic 40.0%
CATGAAATTGAAATGGGAGG+TGG + chr5_4:22875688-22875707 None:intergenic 40.0%
CCTCCCATTTCAATTTCATG+CGG - chr5_4:22875688-22875707 Msa0844440:three_prime_UTR 40.0%
GCACCGCATGAAATTGAAAT+GGG + chr5_4:22875694-22875713 None:intergenic 40.0%
! CAGCTGTGAATTTTCTCTTG+CGG - chr5_4:22875886-22875905 Msa0844440:CDS 40.0%
! TTGATCTGTTTTCTCCAACC+AGG - chr5_4:22876171-22876190 Msa0844440:intron 40.0%
ATTTCTGCTTCACGTGGAAT+TGG - chr5_4:22876243-22876262 Msa0844440:CDS 40.0%
GAGAGGAAAAATAGTGAGAG+AGG + chr5_4:22876351-22876370 None:intergenic 40.0%
GGTAGAGATTTGCAAATGAG+AGG + chr5_4:22876368-22876387 None:intergenic 40.0%
! GCACTTTGAGCTTGACATTT+TGG - chr5_4:22876843-22876862 Msa0844440:intron 40.0%
GATAGAAGCAAGCAACAAAG+TGG + chr5_4:22877110-22877129 None:intergenic 40.0%
!! CCACACTTTAAGATATTCGG+CGG + chr5_4:22877252-22877271 None:intergenic 40.0%
GGTGAATCTTCATTTCGTTC+AGG - chr5_4:22877333-22877352 Msa0844440:intron 40.0%
! GTTTAGGATGAGGATTTCGA+AGG - chr5_4:22877365-22877384 Msa0844440:intron 40.0%
!! GATTTCGAAGGTTTTGTGCA+GGG - chr5_4:22877377-22877396 Msa0844440:intron 40.0%
TTGTGCAGGGAAATTGATGT+TGG - chr5_4:22877390-22877409 Msa0844440:intron 40.0%
TGTGCAGGGAAATTGATGTT+GGG - chr5_4:22877391-22877410 Msa0844440:intron 40.0%
AGAGATGAACGGTATGAAGA+GGG + chr5_4:22877476-22877495 None:intergenic 40.0%
TCTCTCTCTGTATTCAACAC+TGG - chr5_4:22877545-22877564 Msa0844440:intron 40.0%
!! CTCAGCAATGATGTTTTTGC+GGG - chr5_4:22877607-22877626 Msa0844440:intron 40.0%
!! TCAGCAATGATGTTTTTGCG+GGG - chr5_4:22877608-22877627 Msa0844440:intron 40.0%
! ATAGCCACTGACTATAACCA+CGG + chr5_4:22877671-22877690 None:intergenic 40.0%
TAGTCAGTGGCTATCAATGA+AGG - chr5_4:22877677-22877696 Msa0844440:intron 40.0%
! ATTCCCTTTGTTTCTCATCG+AGG - chr5_4:22877925-22877944 Msa0844440:CDS 40.0%
AAGCCTCGATGAGAAACAAA+GGG + chr5_4:22877931-22877950 None:intergenic 40.0%
TGTACAAAAAAACGCACAGC+AGG + chr5_4:22877971-22877990 None:intergenic 40.0%
!!! TTTTTTGTACAGTCTGCCTG+AGG - chr5_4:22877980-22877999 Msa0844440:CDS 40.0%
TATAGCCTCATGTTTAGTGC+TGG - chr5_4:22878096-22878115 Msa0844440:CDS 40.0%
CAAAACCAGCACTAAACATG+AGG + chr5_4:22878104-22878123 None:intergenic 40.0%
!! TACACAAAAAGTACCACTCG+CGG + chr5_4:22878221-22878240 None:intergenic 40.0%
TTGTTGGATTGCAGGTGAAT+TGG - chr5_4:22878391-22878410 Msa0844440:intron 40.0%
TCATAATACCACCCGTATTC+GGG + chr5_4:22878601-22878620 None:intergenic 40.0%
GGGAGGATTAAGATTATCTC+TGG - chr5_4:22878640-22878659 Msa0844440:intron 40.0%
! TTTCTGCTCTGGTTGCATTT+TGG + chr5_4:22878679-22878698 None:intergenic 40.0%
TCTTAGTGTGTAACACACCT+TGG + chr5_4:22878709-22878728 None:intergenic 40.0%
CTTGGGCTTCAATTAGATCT+TGG + chr5_4:22878885-22878904 None:intergenic 40.0%
CAAGATCTAATTGAAGCCCA+AGG - chr5_4:22878883-22878902 Msa0844440:intron 40.0%
CAATTTATGATACCTGGCCT+TGG + chr5_4:22878903-22878922 None:intergenic 40.0%
!! TGATGTTGACTTATGACTGC+AGG - chr5_4:22878969-22878988 Msa0844440:intron 40.0%
!! GATGTTGACTTATGACTGCA+GGG - chr5_4:22878970-22878989 Msa0844440:intron 40.0%
TGGGAAAACAATGCTCTTCA+AGG - chr5_4:22879035-22879054 Msa0844440:CDS 40.0%
! GGCGAAATTACGGTGTTAAA+CGG - chr5_4:22879091-22879110 Msa0844440:CDS 40.0%
TGTTAAGCGTCATGATCTGA+AGG - chr5_4:22879146-22879165 Msa0844440:intron 40.0%
AGATCTTGCCTTGACACAAA+AGG - chr5_4:22879294-22879313 Msa0844440:CDS 40.0%
ACAAAAGGAATCTTTGCCCA+AGG - chr5_4:22879309-22879328 Msa0844440:CDS 40.0%
AGACCTTTCACCATCATCAT+TGG + chr5_4:22879561-22879580 None:intergenic 40.0%
GATGCTTGATGCAAAGTAGT+CGG - chr5_4:22879623-22879642 Msa0844440:five_prime_UTR 40.0%
! AGAAGTCTGAAACAGATGGT+CGG + chr5_4:22879730-22879749 None:intergenic 40.0%
CCGCATGAAATTGAAATGGG+AGG + chr5_4:22875691-22875710 None:intergenic 45.0%
GGCACCGCATGAAATTGAAA+TGG + chr5_4:22875695-22875714 None:intergenic 45.0%
! AATTTCATGCGGTGCCGAAT+CGG - chr5_4:22875699-22875718 Msa0844440:three_prime_UTR 45.0%
TGGTGGTTCAGATCTGGTTA+CGG + chr5_4:22875731-22875750 None:intergenic 45.0%
!! AAGCGGTTGGATTTGGTTTG+TGG + chr5_4:22875751-22875770 None:intergenic 45.0%
CATTGTGAAGCGGTTGGATT+TGG + chr5_4:22875758-22875777 None:intergenic 45.0%
CAAATCCAACCGCTTCACAA+TGG - chr5_4:22875756-22875775 Msa0844440:CDS 45.0%
AGAAAATTCACAGCTGACGG+CGG + chr5_4:22875882-22875901 None:intergenic 45.0%
TGAATGAACGGGAAGCAGAA+GGG + chr5_4:22875942-22875961 None:intergenic 45.0%
TTGAATGAACGGGAAGCAGA+AGG + chr5_4:22875943-22875962 None:intergenic 45.0%
!! TGGCGTTGGTGTTGAATGAA+CGG + chr5_4:22875954-22875973 None:intergenic 45.0%
CTCATCAGTGTTCATCGTAC+TGG + chr5_4:22875981-22876000 None:intergenic 45.0%
ACGACAACGATCAGCAACAT+TGG + chr5_4:22876005-22876024 None:intergenic 45.0%
AGCGATAACAACTACCTGAG+AGG + chr5_4:22876066-22876085 None:intergenic 45.0%
TTGAGCGGTGCTTAACATAG+TGG - chr5_4:22876197-22876216 Msa0844440:CDS 45.0%
CCACGTGAAGCAGAAATGAA+TGG + chr5_4:22876240-22876259 None:intergenic 45.0%
CCATTCATTTCTGCTTCACG+TGG - chr5_4:22876237-22876256 Msa0844440:CDS 45.0%
CCGCCGAATATCTTAAAGTG+TGG - chr5_4:22877249-22877268 Msa0844440:intron 45.0%
! CTTCATTTCGTTCAGGTTCG+TGG - chr5_4:22877340-22877359 Msa0844440:intron 45.0%
!! GGATTTCGAAGGTTTTGTGC+AGG - chr5_4:22877376-22877395 Msa0844440:intron 45.0%
CCACACCTGACATTCTCTAT+AGG + chr5_4:22877433-22877452 None:intergenic 45.0%
CCTATAGAGAATGTCAGGTG+TGG - chr5_4:22877430-22877449 Msa0844440:intron 45.0%
GAGAGATGAACGGTATGAAG+AGG + chr5_4:22877477-22877496 None:intergenic 45.0%
GAGAGAGAGAGAGAGATGAA+CGG + chr5_4:22877487-22877506 None:intergenic 45.0%
!! CAGCAATGATGTTTTTGCGG+GGG - chr5_4:22877609-22877628 Msa0844440:intron 45.0%
TATGCCGTGGTTATAGTCAG+TGG - chr5_4:22877664-22877683 Msa0844440:intron 45.0%
CAAGCCTCGATGAGAAACAA+AGG + chr5_4:22877932-22877951 None:intergenic 45.0%
! CTTTGTTTCTCATCGAGGCT+TGG - chr5_4:22877930-22877949 Msa0844440:CDS 45.0%
TCTGCCTGAGGTGTGTTTAA+GGG - chr5_4:22877992-22878011 Msa0844440:CDS 45.0%
! GTGTTTAAGGGGTGATAGTG+AGG - chr5_4:22878004-22878023 Msa0844440:CDS 45.0%
! TAGTGAGGCTTTTGTGTGCT+TGG - chr5_4:22878019-22878038 Msa0844440:CDS 45.0%
TTTGTGTGCTTGGCAGTGTT+AGG - chr5_4:22878029-22878048 Msa0844440:CDS 45.0%
!!! GTGCTGGTTTTGCAGTCTTT+TGG - chr5_4:22878112-22878131 Msa0844440:intron 45.0%
!! TTGAGTGCCTTTGGTGTTCA+AGG - chr5_4:22878147-22878166 Msa0844440:intron 45.0%
!! TGAGTGCCTTTGGTGTTCAA+GGG - chr5_4:22878148-22878167 Msa0844440:intron 45.0%
AAGGGGATGCCGCATATATA+CGG - chr5_4:22878166-22878185 Msa0844440:intron 45.0%
!! CAAAAGGCGCCGTATATATG+CGG + chr5_4:22878178-22878197 None:intergenic 45.0%
CTTAATCCTCCCAGCACATT+TGG + chr5_4:22878632-22878651 None:intergenic 45.0%
TTGGCACAACATTTCTGCTC+TGG + chr5_4:22878690-22878709 None:intergenic 45.0%
AGAGCAGAAATGTTGTGCCA+AGG - chr5_4:22878689-22878708 Msa0844440:intron 45.0%
!! TCCAGGTGATGGACAATACT+GGG - chr5_4:22878821-22878840 Msa0844440:intron 45.0%
CAAGGCAAGATCTATGTCAC+AGG + chr5_4:22879287-22879306 None:intergenic 45.0%
AAAGGAATCTTTGCCCAAGG+AGG - chr5_4:22879312-22879331 Msa0844440:CDS 45.0%
TCTTAGTAGCACACCTCCTT+GGG + chr5_4:22879328-22879347 None:intergenic 45.0%
CAGCATACACCAAGTAGCAA+GGG - chr5_4:22879488-22879507 Msa0844440:five_prime_UTR 45.0%
AGCATACACCAAGTAGCAAG+GGG - chr5_4:22879489-22879508 Msa0844440:five_prime_UTR 45.0%
GTTCTTGGCTCCAATGATGA+TGG - chr5_4:22879548-22879567 Msa0844440:five_prime_UTR 45.0%
!! GCTCCAATGATGATGGTGAA+AGG - chr5_4:22879555-22879574 Msa0844440:five_prime_UTR 45.0%
! TCCAGCTTTTGTCCTTTGTC+TGG - chr5_4:22879676-22879695 Msa0844440:five_prime_UTR 45.0%
TCCAGACAAAGGACAAAAGC+TGG + chr5_4:22879680-22879699 None:intergenic 45.0%
!! GGAGGTGCCTTGGAAAATAC+AGG + chr5_4:22875613-22875632 None:intergenic 50.0%
TGGGAGGTGGATAGAGAAAG+AGG + chr5_4:22875675-22875694 None:intergenic 50.0%
GGTTACGGTGTTCTCCGATT+CGG + chr5_4:22875716-22875735 None:intergenic 50.0%
GGTTTGTGGTGGTTCAGATC+TGG + chr5_4:22875737-22875756 None:intergenic 50.0%
!! CGGTTGGATTTGGTTTGTGG+TGG + chr5_4:22875748-22875767 None:intergenic 50.0%
ATCCAACCGCTTCACAATGG+AGG - chr5_4:22875759-22875778 Msa0844440:CDS 50.0%
TTCCTCCATTGTGAAGCGGT+TGG + chr5_4:22875764-22875783 None:intergenic 50.0%
GTGCTTCCTCCATTGTGAAG+CGG + chr5_4:22875768-22875787 None:intergenic 50.0%
! TGAGAGGAGAAGTACGACTG+TGG + chr5_4:22875834-22875853 None:intergenic 50.0%
GAATGAACGGGAAGCAGAAG+GGG + chr5_4:22875941-22875960 None:intergenic 50.0%
!! GGCGTTGGTGTTGAATGAAC+GGG + chr5_4:22875953-22875972 None:intergenic 50.0%
TACCTGAGAGGAAATCGTCG+CGG + chr5_4:22876054-22876073 None:intergenic 50.0%
TCTCCAACCAGGAGTTTGAG+CGG - chr5_4:22876182-22876201 Msa0844440:intron 50.0%
! TTAAGCACCGCTCAAACTCC+TGG + chr5_4:22876192-22876211 None:intergenic 50.0%
TCACGTGGAATTGGAGACAG+TGG - chr5_4:22876252-22876271 Msa0844440:CDS 50.0%
TTGGGATGCGAAAGTGACAG+AGG - chr5_4:22876287-22876306 Msa0844440:CDS 50.0%
! CATTTCGTTCAGGTTCGTGG+AGG - chr5_4:22877343-22877362 Msa0844440:intron 50.0%
! GTTCAGGTTCGTGGAGGTTT+AGG - chr5_4:22877349-22877368 Msa0844440:intron 50.0%
! GTTCGTGGAGGTTTAGGATG+AGG - chr5_4:22877355-22877374 Msa0844440:intron 50.0%
!! CAATGATGTTTTTGCGGGGG+TGG - chr5_4:22877612-22877631 Msa0844440:intron 50.0%
TGGAAGAAGGCTCTCGATTG+CGG - chr5_4:22877639-22877658 Msa0844440:intron 50.0%
!! TTTCTCATCGAGGCTTGGTG+CGG - chr5_4:22877935-22877954 Msa0844440:CDS 50.0%
GTCTGCCTGAGGTGTGTTTA+AGG - chr5_4:22877991-22878010 Msa0844440:CDS 50.0%
CTGCCTGAGGTGTGTTTAAG+GGG - chr5_4:22877993-22878012 Msa0844440:CDS 50.0%
TCACCCCTTAAACACACCTC+AGG + chr5_4:22877999-22878018 None:intergenic 50.0%
!! GCAGCTAGCTTCCTTCCTTT+TGG - chr5_4:22878068-22878087 Msa0844440:CDS 50.0%
!! GAGTGCCTTTGGTGTTCAAG+GGG - chr5_4:22878149-22878168 Msa0844440:intron 50.0%
! TCTTTTCGTGTTTCCGCGAG+TGG - chr5_4:22878205-22878224 Msa0844440:intron 50.0%
TGTGGGATAGAGCCCGAATA+CGG - chr5_4:22878586-22878605 Msa0844440:intron 50.0%
ATGCCTGCACCAAATGTGCT+GGG - chr5_4:22878620-22878639 Msa0844440:intron 50.0%
CAGGTTTAAGCTGCATGTCC+AGG - chr5_4:22878804-22878823 Msa0844440:intron 50.0%
TAAGCTGCATGTCCAGGTGA+TGG - chr5_4:22878810-22878829 Msa0844440:intron 50.0%
!! GTCCAGGTGATGGACAATAC+TGG - chr5_4:22878820-22878839 Msa0844440:intron 50.0%
ACCCAGTATTGTCCATCACC+TGG + chr5_4:22878825-22878844 None:intergenic 50.0%
TCTAATTGAAGCCCAAGGCC+AGG - chr5_4:22878888-22878907 Msa0844440:intron 50.0%
! GTTGACTTATGACTGCAGGG+TGG - chr5_4:22878973-22878992 Msa0844440:intron 50.0%
!! ATGGTAACTTGCTTCACGGC+TGG - chr5_4:22879070-22879089 Msa0844440:CDS 50.0%
CTTCACGGCTGGCGAAATTA+CGG - chr5_4:22879081-22879100 Msa0844440:CDS 50.0%
GTCTTAGTAGCACACCTCCT+TGG + chr5_4:22879329-22879348 None:intergenic 50.0%
GAGCAAGTCTGATGTGAACC+AGG - chr5_4:22879457-22879476 Msa0844440:five_prime_UTR 50.0%
CAAGTCTGATGTGAACCAGG+TGG - chr5_4:22879460-22879479 Msa0844440:five_prime_UTR 50.0%
TCTGATGTGAACCAGGTGGT+AGG - chr5_4:22879464-22879483 Msa0844440:five_prime_UTR 50.0%
CTGATGTGAACCAGGTGGTA+GGG - chr5_4:22879465-22879484 Msa0844440:five_prime_UTR 50.0%
GCAGCATACACCAAGTAGCA+AGG - chr5_4:22879487-22879506 Msa0844440:five_prime_UTR 50.0%
! CAAGGCACCTCCATGTTCAC+CGG - chr5_4:22875621-22875640 Msa0844440:three_prime_UTR 55.0%
AAAGAGGCCGGTGAACATGG+AGG + chr5_4:22875631-22875650 None:intergenic 55.0%
GAGAAAGAGGCCGGTGAACA+TGG + chr5_4:22875634-22875653 None:intergenic 55.0%
CGTACTTCTCCTCTCATCCC+TGG - chr5_4:22875838-22875857 Msa0844440:CDS 55.0%
AAATTCACAGCTGACGGCGG+CGG + chr5_4:22875879-22875898 None:intergenic 55.0%
AAGCAGAAGGGGCAACAGGA+CGG + chr5_4:22875930-22875949 None:intergenic 55.0%
! GTGTTCATCGTACTGGCGCA+TGG + chr5_4:22875974-22875993 None:intergenic 55.0%
ACAGTGGAGTTCGACGTGGT+TGG - chr5_4:22876268-22876287 Msa0844440:CDS 55.0%
CAGTGGAGTTCGACGTGGTT+GGG - chr5_4:22876269-22876288 Msa0844440:CDS 55.0%
! GTTTTTGCGGGGGTGGTTGT+TGG - chr5_4:22877619-22877638 Msa0844440:intron 55.0%
CTCGATTGCGGTTTATGCCG+TGG - chr5_4:22877651-22877670 Msa0844440:intron 55.0%
GTGTGCTTGGCAGTGTTAGG+TGG - chr5_4:22878032-22878051 Msa0844440:CDS 55.0%
GGCATCCCCTTGAACACCAA+AGG + chr5_4:22878157-22878176 None:intergenic 55.0%
GTGGGATAGAGCCCGAATAC+GGG - chr5_4:22878587-22878606 Msa0844440:intron 55.0%
GATGCCTGCACCAAATGTGC+TGG - chr5_4:22878619-22878638 Msa0844440:intron 55.0%
CAGGTGCAGTTGCTTGAAGC+TGG - chr5_4:22879428-22879447 Msa0844440:five_prime_UTR 55.0%
ACACCAAGTAGCAAGGGGTC+TGG - chr5_4:22879494-22879513 Msa0844440:five_prime_UTR 55.0%
CACCAAGTAGCAAGGGGTCT+GGG - chr5_4:22879495-22879514 Msa0844440:five_prime_UTR 55.0%
TTCCCAGACCCCTTGCTACT+TGG + chr5_4:22879500-22879519 None:intergenic 55.0%
!! CGGTGAACATGGAGGTGCCT+TGG + chr5_4:22875623-22875642 None:intergenic 60.0%
! AATGGAGGAAGCACGCGCGA+AGG - chr5_4:22875774-22875793 Msa0844440:CDS 60.0%
GAAGGACGCAACGGAACGCA+TGG - chr5_4:22875792-22875811 Msa0844440:CDS 60.0%
ACGCAACGGAACGCATGGCA+GGG - chr5_4:22875797-22875816 Msa0844440:CDS 60.0%
GGTCAATTCGACGACGGCCA+GGG + chr5_4:22875858-22875877 None:intergenic 60.0%
TCTCTTGCGGCCTCCTCTCT+AGG - chr5_4:22875899-22875918 Msa0844440:CDS 60.0%
GACGGAGAGACCTAGAGAGG+AGG + chr5_4:22875912-22875931 None:intergenic 60.0%
CAGGACGGAGAGACCTAGAG+AGG + chr5_4:22875915-22875934 None:intergenic 60.0%
! ATCGTACTGGCGCATGGCGT+TGG + chr5_4:22875968-22875987 None:intergenic 60.0%
AATCGTCGCGGCAAGTGCGA+GGG + chr5_4:22876042-22876061 None:intergenic 60.0%
AAATCGTCGCGGCAAGTGCG+AGG + chr5_4:22876043-22876062 None:intergenic 60.0%
TGCCGCGACGATTTCCTCTC+AGG - chr5_4:22876049-22876068 Msa0844440:CDS 60.0%
GCACCGCTCAAACTCCTGGT+TGG + chr5_4:22876188-22876207 None:intergenic 60.0%
GGAGACAGTGGAGTTCGACG+TGG - chr5_4:22876264-22876283 Msa0844440:CDS 60.0%
CGGGGGTGGTTGTTGGAAGA+AGG - chr5_4:22877626-22877645 Msa0844440:intron 60.0%
!! TCATCGAGGCTTGGTGCGGA+AGG - chr5_4:22877939-22877958 Msa0844440:CDS 60.0%
GGATAGAGCCCGAATACGGG+TGG - chr5_4:22878590-22878609 Msa0844440:intron 60.0%
!! CCTCCCAGCACATTTGGTGC+AGG + chr5_4:22878626-22878645 None:intergenic 60.0%
CCTGCACCAAATGTGCTGGG+AGG - chr5_4:22878623-22878642 Msa0844440:intron 60.0%
GTGTATGCTGCCCTACCACC+TGG + chr5_4:22879478-22879497 None:intergenic 60.0%
GTAGCAAGGGGTCTGGGAAG+AGG - chr5_4:22879501-22879520 Msa0844440:five_prime_UTR 60.0%
AGCACGCGCGAAGGACGCAA+CGG - chr5_4:22875783-22875802 Msa0844440:CDS 65.0%
GACGCAACGGAACGCATGGC+AGG - chr5_4:22875796-22875815 Msa0844440:CDS 65.0%
CGCAACGGAACGCATGGCAG+GGG - chr5_4:22875798-22875817 Msa0844440:CDS 65.0%
CGGTCAATTCGACGACGGCC+AGG + chr5_4:22875859-22875878 None:intergenic 65.0%
GGCGGCGGTCAATTCGACGA+CGG + chr5_4:22875864-22875883 None:intergenic 65.0%
CGGGAAGCAGAAGGGGCAAC+AGG + chr5_4:22875934-22875953 None:intergenic 65.0%
CGACGACGGCCAGGGATGAG+AGG + chr5_4:22875850-22875869 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 22875524 22879836 22875524 ID=Msa0844440;Name=Msa0844440
chr5_4 mRNA 22875524 22879836 22875524 ID=Msa0844440-mRNA-1;Parent=Msa0844440;Name=Msa0844440-mRNA-1;_AED=0.09;_eAED=0.09;_QI=462|0.71|0.75|1|1|1|8|205|374
chr5_4 exon 22875524 22875938 22875524 ID=Msa0844440-mRNA-1:exon:9321;Parent=Msa0844440-mRNA-1
chr5_4 exon 22876027 22876098 22876027 ID=Msa0844440-mRNA-1:exon:9320;Parent=Msa0844440-mRNA-1
chr5_4 exon 22876193 22876369 22876193 ID=Msa0844440-mRNA-1:exon:9319;Parent=Msa0844440-mRNA-1
chr5_4 exon 22876451 22876553 22876451 ID=Msa0844440-mRNA-1:exon:9318;Parent=Msa0844440-mRNA-1
chr5_4 exon 22876650 22876804 22876650 ID=Msa0844440-mRNA-1:exon:9317;Parent=Msa0844440-mRNA-1
chr5_4 exon 22877914 22878116 22877914 ID=Msa0844440-mRNA-1:exon:9316;Parent=Msa0844440-mRNA-1
chr5_4 exon 22879024 22879143 22879024 ID=Msa0844440-mRNA-1:exon:9315;Parent=Msa0844440-mRNA-1
chr5_4 exon 22879290 22879836 22879290 ID=Msa0844440-mRNA-1:exon:9314;Parent=Msa0844440-mRNA-1
chr5_4 five_prime_UTR 22879375 22879836 22879375 ID=Msa0844440-mRNA-1:five_prime_utr;Parent=Msa0844440-mRNA-1
chr5_4 CDS 22879290 22879374 22879290 ID=Msa0844440-mRNA-1:cds;Parent=Msa0844440-mRNA-1
chr5_4 CDS 22879024 22879143 22879024 ID=Msa0844440-mRNA-1:cds;Parent=Msa0844440-mRNA-1
chr5_4 CDS 22877914 22878116 22877914 ID=Msa0844440-mRNA-1:cds;Parent=Msa0844440-mRNA-1
chr5_4 CDS 22876650 22876804 22876650 ID=Msa0844440-mRNA-1:cds;Parent=Msa0844440-mRNA-1
chr5_4 CDS 22876451 22876553 22876451 ID=Msa0844440-mRNA-1:cds;Parent=Msa0844440-mRNA-1
chr5_4 CDS 22876193 22876369 22876193 ID=Msa0844440-mRNA-1:cds;Parent=Msa0844440-mRNA-1
chr5_4 CDS 22876027 22876098 22876027 ID=Msa0844440-mRNA-1:cds;Parent=Msa0844440-mRNA-1
chr5_4 CDS 22875729 22875938 22875729 ID=Msa0844440-mRNA-1:cds;Parent=Msa0844440-mRNA-1
chr5_4 three_prime_UTR 22875524 22875728 22875524 ID=Msa0844440-mRNA-1:three_prime_utr;Parent=Msa0844440-mRNA-1
Gene Sequence

>Msa0844440

ATGAACACTGATGAGTCCAATGTTGCTGATCGTTGTCGTGCTGATCGCTCTTTCCCTCGCACTTGCCGCGACGATTTCCTCTCAGTGGATCAATTAATCGATAATCCATTCATTTCTGCTTCACGTGGAATTGGAGACAGTGGAGTTCGACGTGGTTGGGATGCGAAAGTGACAGAGGATTCTCTGCTTCTTCGTTTACATCAGTTAAGTCCGCCGAATATCTTAAAGTGTGGCGACTGTTCAACGTTTATATTGAATCGCAAAGGTTCTGTTCCGTTTGATGAACATATTGTGGGTGAATCTTCATTTCGTTCAGGTTCGTGGAGGTTTAGGATGAGGATTTCGAAGGTTTTGTGCAGGGAAATTGATGTTGGGATTTCGTCGAATTCAACCTATAGAGAATGTCAGATATGTAATGTGATTATTCTAGCATCTATATGTGGGATAGAGCCCGAATACGGGTGGTATTATGATGCCTGCACCAAATGTGCTGGGAGGATTAAGATTATCTCTGGAAGGATGTTTTGTCCAAAATGCAACCAGAGCAGAAATGTTGTGCCAAGGTTTAAGCTGCATGTCCAGGTGATGGACAATACTGGGTCAACAAGTTTCATTTTGTTTGATCGCAATGTTTGTGTCCAAGATCTAATTGAAGCCCAAGGCCAGGGTGGCAGTTATGATGATTACCCAACTGATCTGAATGTTTTGATTGGGAAAACAATGCTCTTCAAGGTTGAGATTACAAATGGTAACTTGCTTCACGGCTGGCGAAATTACGGTGTTAAACGGACATCGAATGATGCTGATCTTATCAAAATGTTTGTTAAGCGTCATGATCTGAAGATTGTTGATGTCGACAATGATGCCTGTGACATAGATCTTGCCTTGACACAAAAGGAATCTTTGCCCAAGGAGAATGTTCAGGTGCAGTTGCTTGAAGCTGGTGACTCGAGCAAGTCTGATGTGAACCAGGTGGTAGGGCAGCATACACCAAGTAGCAAGGGGTCTGGGAAGAGGTCTGCTGATAAAGATGATTCTGATGTTCTTGGCTCCAATGATGATGGTGAAAGGTCTATCAACAAACTTTCGAAGCTGAAATGTGTCAAGATTGAGAAGGATGCTTGA
Protein sequence

>Msa0844440

MNTDESNVADRCRADRSFPRTCRDDFLSVDQLIDNPFISASRGIGDSGVRRGWDAKVTEDSLLLRLHQLSPPNILKCGDCSTFILNRKGSVPFDEHIVGESSFRSGSWRFRMRISKVLCREIDVGISSNSTYRECQICNVIILASICGIEPEYGWYYDACTKCAGRIKIISGRMFCPKCNQSRNVVPRFKLHVQVMDNTGSTSFILFDRNVCVQDLIEAQGQGGSYDDYPTDLNVLIGKTMLFKVEITNGNLLHGWRNYGVKRTSNDADLIKMFVKRHDLKIVDVDNDACDIDLALTQKESLPKENVQVQLLEAGDSSKSDVNQVVGQHTPSSKGSGKRSADKDDSDVLGSNDDGERSINKLSKLKCVKIEKDA*