AlfalfaGEDB | Msa0903780

M. sativa cultivar zhongmu-4 / Msa0903780

KEGG: -
GO: GO:0002831 GO:0002832 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0008150 GO:0009507 GO:0009536 GO:0016020 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043901 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0065007 GO:0071944 GO:0080134 GO:1900150 GO:1900424 GO:1900425
PFAM: PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0903780	XP_003618423.1	98.671	602	8	0	1	602	1	602	0.0	1226

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0903780	sp\|Q9LSI9\|BIR2_ARATH	61.794	602	215	7	5	600	11	603	0.0	756

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000880	Msa0903780	0.808334	3.260048e-50	-8.615850e-47
Msa0000910	Msa0903780	0.831538	1.577409e-55	-8.615850e-47
Msa0002560	Msa0903780	0.819382	1.195938e-52	-8.615850e-47
Msa0002680	Msa0903780	0.852706	3.870975e-61	-8.615850e-47
Msa0002710	Msa0903780	0.817645	2.962130e-52	-8.615850e-47
Msa0003220	Msa0903780	0.860602	1.842656e-63	-8.615850e-47
Msa0003270	Msa0903780	0.823534	1.315340e-53	-8.615850e-47
Msa0003720	Msa0903780	0.808960	2.395061e-50	-8.615850e-47
Msa0004540	Msa0903780	0.827213	1.771114e-54	-8.615850e-47
Msa0005620	Msa0903780	0.801369	9.302767e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0903780	MtrunA17_Chr6g0452221	98.671	602	8	0	1	602	1	602	0.0	1226
Msa0903780	MtrunA17_Chr7g0249841	47.979	569	283	8	26	588	30	591	0.0	524
Msa0903780	MtrunA17_Chr8g0337671	44.724	597	310	10	1	588	10	595	2.31e-170	498
Msa0903780	MtrunA17_Chr4g0049181	33.333	588	341	10	19	579	42	605	3.34e-97	310
Msa0903780	MtrunA17_Chr3g0129391	37.739	522	283	16	87	577	640	1150	8.65e-86	290
Msa0903780	MtrunA17_Chr3g0079661	35.458	502	300	10	99	580	697	1194	1.31e-81	278
Msa0903780	MtrunA17_Chr1g0203631	35.662	544	305	12	78	580	732	1271	3.65e-81	278
Msa0903780	MtrunA17_Chr1g0203631	38.739	111	65	3	78	188	409	516	1.35e-11	67.8
Msa0903780	MtrunA17_Chr1g0203631	33.133	166	81	4	52	188	508	672	2.30e-11	67.0
Msa0903780	MtrunA17_Chr1g0203631	33.333	168	100	3	24	191	568	723	5.52e-11	65.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0903780	AT3G28450.1	61.794	602	215	7	5	600	11	603	0.0	756
Msa0903780	AT1G27190.1	61.102	581	213	7	26	598	25	600	0.0	697
Msa0903780	AT1G69990.1	56.757	592	239	10	15	599	8	589	0.0	671
Msa0903780	AT5G48380.1	43.986	582	301	10	24	588	27	600	1.16e-165	486
Msa0903780	AT5G07280.1	37.024	551	289	13	74	577	653	1192	2.64e-87	295
Msa0903780	AT5G07280.1	35.526	152	74	4	60	189	55	204	1.11e-12	72.0
Msa0903780	AT5G07280.1	46.591	88	46	1	104	191	586	672	2.12e-11	67.8
Msa0903780	AT5G07280.1	38.393	112	66	2	77	188	381	489	9.77e-11	65.5
Msa0903780	AT1G55610.1	34.709	533	312	12	99	601	640	1166	9.45e-85	287
Msa0903780	AT1G55610.1	39.130	138	64	7	85	206	263	396	2.63e-12	70.5

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Find 144 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCACAGATGAAACCAA+CGG	0.675193	6_2:-1194927	None:intergenic
AAAGGGGATGTGTATGGATT+CGG	0.399553	6_2:+1196210	Msa0903780:CDS
AAATTCAACAACAGAACCGT+TGG	0.562583	6_2:+1194911	Msa0903780:CDS
AACATCGACGAAGAATTTAA+AGG	0.331687	6_2:+1196282	Msa0903780:CDS
AACTAAGCCGGCTCATTCTC+TGG	0.402380	6_2:-1196552	None:intergenic
AAGGAACAGTGATGAAGACA+TGG	0.639152	6_2:-1194762	None:intergenic
AAGGAAGGGTATGTTGTCGG+CGG	0.652830	6_2:+1195538	Msa0903780:CDS
AAGTGGAAAAGGTAACGATG+AGG	0.682466	6_2:+1196374	Msa0903780:CDS
AATGGTTGCTTCTTTGAAAG+GGG	0.582636	6_2:+1196194	Msa0903780:CDS
ACAACACAATACCCCAACAA+AGG	0.664741	6_2:-1195844	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATCACAGATGAAACCAA+CGG	-	chr6_2:1194930-1194949	None:intergenic	30.0%
TGGTATGAGTAAGAAGAATT+TGG	+	chr6_2:1195408-1195427	Msa0903780:CDS	30.0%
AGAATGTTCTTATTACGACT+AGG	+	chr6_2:1195683-1195702	Msa0903780:CDS	30.0%
GTTTATAAGCATATGTCGAA+TGG	+	chr6_2:1195886-1195905	Msa0903780:CDS	30.0%
ATATTCTGTTGTATAATCGG+AGG	-	chr6_2:1196024-1196043	None:intergenic	30.0%
AACATCGACGAAGAATTTAA+AGG	+	chr6_2:1196282-1196301	Msa0903780:CDS	30.0%
CCTTCAACGAATTATAAACT+TGG	-	chr6_2:1196470-1196489	None:intergenic	30.0%
CCAAGTTTATAATTCGTTGA+AGG	+	chr6_2:1196467-1196486	Msa0903780:CDS	30.0%
AAAATCACAGATGAAACCAA+CGG	-	chr6_2:1194930-1194949	None:intergenic	30.0%
TGGTATGAGTAAGAAGAATT+TGG	+	chr6_2:1195408-1195427	Msa0903780:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	1194764	1196572	1194764	ID=Msa0903780;Name=Msa0903780
chr6_2	mRNA	1194764	1196572	1194764	ID=Msa0903780-mRNA-1;Parent=Msa0903780;Name=Msa0903780-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|602
chr6_2	exon	1194764	1196572	1194764	ID=Msa0903780-mRNA-1:exon:496;Parent=Msa0903780-mRNA-1
chr6_2	CDS	1194764	1196572	1194764	ID=Msa0903780-mRNA-1:cds;Parent=Msa0903780-mRNA-1

Gene Sequence

>Msa0903780

ATGTCTTCATCACTGTTCCTTCTCTTCTTCACAGTTTTCACTTTCTGGGTCACTTTATCTTCATCTCAAGTTGAAGAAGACAACGTAAGATGTCTTCAAGGTATTCAACAAAACCTAGGAAACTCCGATAGTCAAATCTCTTCATGGAAATTCAACAACAGAACCGTTGGTTTCATCTGTGATTTTGTTGGTGTAACATGTTGGAATGTTAGAGAGAATCGTGTTTTGGGTTTGGAGCTGAAAGGCATGAAGCTTTCTGGTAAGATTCCTGAGTCTTTGAAGTATTGTGGTCAAAGTTTGCAAAGATTGGATCTTGGTTCAAATTCATTGAGTTCAGTGATTCCAACTCAGATCTGTGAATGGATGCCTTTTTTGGTAACTTTGGATTTATCTGGTAATAATTTGAATGGTGAAATTCCACATACTCTTGTGAATTGTACTTATTTGAATGAGTTAATGTTGGATAATAATCATTTAACTGGTAGTATACCTTATGAGATTACTAGTTTAACTAGGTTACATAAGTTTAGTGTTGCTAATAATCAATTAAGTGGTGATATACCATCTTTTTTTAATGGTTTTGATAAGGATGGTTTTGATGGGAATAGTGGTTTATGTGGTGGTCCACTTGGATCAAAGTGTGGTGGTATGAGTAAGAAGAATTTGGCTATTATTATAGCTGCTGGTGTTTTTGGTGCTGCTGGTTCTTTGTTGGCTGCTTTTGGTTTGTGGTGGTGGTATCATTTGAGGTTAGGTGGGGAGAGGAGGAGGAGTAAGGAAGGGTATGTTGTCGGCGGGGTTGATGATTGGGCGGTTAGGTTGAGAGGTCATAAGCTTGCTCAAGTTAATCTTTTTCAGAAACCGATTGTTAAGGTGAAGCTTGGTGATTTGATGGCTGCTACGAATAATTTTAGTAATGAGAATGTTCTTATTACGACTAGGACGGGGGCTACTTATAGGGCTGATCTTCCGGATGGTTCGACGCTAGCGGTGAAGAGGTTGAGTAGTTGTAAGATTGGTGAGAAGCAGTTTCGGATGGAGATGAATCGGTTGGGACAGGTTAGGCATCCGAATTTGGCGCCTTTGTTGGGGTATTGTGTTGTGGAAGAGGAGAAGCTTTTGGTTTATAAGCATATGTCGAATGGAACACTTTATTCGTTGTTGCATAAGAATAGTGGTGTGTTGGATTGGTTGATGAGGTTTAGGATTGGGTTGGGAGCGGCTAGGGGACTTGCGTGGTTGCATCATGGGTGTCATCCTCCGATTATACAACAGAATATTTGTTCAAATGTGATTCTTGTTGATGAAGAATTCGATGCTCGGATAATGGACTTTGGACTTGCCAGGCTTATGACTTCTGACGCCAATGGTAGTTTTGTGAACGGTGATTTGGGGGAACTCGGTTATATTGCTCCTGAGTATTCGAGTACAATGGTTGCTTCTTTGAAAGGGGATGTGTATGGATTCGGAGTTTTACTTTTGGAGTTGGTCACTGGGTGCAAACCTCTCGAGGTGAATAACATCGACGAAGAATTTAAAGGCAACTTGGTAGATTGGGTGAATATGCATTCAAGTTCTGGTAGACTCAAGGACTGCATCGATAGATCGATAAGTGGAAAAGGTAACGATGAGGAGATTCTGCAGTTTCTGAAAATCGCATCCAATTGTGTCATTGCTCGCGCAAAAGATAGGTGGTCTATGTACCAAGTTTATAATTCGTTGAAGGGCATTTCCAAAGACCACAGTTTCTCCGAACACGATGACGAATTTCCCTTGATCTTTGGTAAGCCAGAGAATGAGCCGGCTTAG

Protein sequence

>Msa0903780

MSSSLFLLFFTVFTFWVTLSSSQVEEDNVRCLQGIQQNLGNSDSQISSWKFNNRTVGFICDFVGVTCWNVRENRVLGLELKGMKLSGKIPESLKYCGQSLQRLDLGSNSLSSVIPTQICEWMPFLVTLDLSGNNLNGEIPHTLVNCTYLNELMLDNNHLTGSIPYEITSLTRLHKFSVANNQLSGDIPSFFNGFDKDGFDGNSGLCGGPLGSKCGGMSKKNLAIIIAAGVFGAAGSLLAAFGLWWWYHLRLGGERRRSKEGYVVGGVDDWAVRLRGHKLAQVNLFQKPIVKVKLGDLMAATNNFSNENVLITTRTGATYRADLPDGSTLAVKRLSSCKIGEKQFRMEMNRLGQVRHPNLAPLLGYCVVEEEKLLVYKHMSNGTLYSLLHKNSGVLDWLMRFRIGLGAARGLAWLHHGCHPPIIQQNICSNVILVDEEFDARIMDFGLARLMTSDANGSFVNGDLGELGYIAPEYSSTMVASLKGDVYGFGVLLLELVTGCKPLEVNNIDEEFKGNLVDWVNMHSSSGRLKDCIDRSISGKGNDEEILQFLKIASNCVIARAKDRWSMYQVYNSLKGISKDHSFSEHDDEFPLIFGKPENEPA*