AlfalfaGEDB | Msa1106210

M. sativa cultivar zhongmu-4 / Msa1106210

KEGG: -
GO: -
PFAM: PF01439.21

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1106210	XP_013448846.1	97.436	78	2	0	1	78	1	78	1.11e-44	148

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1106210	sp\|Q0IMG5\|MT4A_ORYSJ	60.000	80	27	2	1	77	1	78	7.42e-23	85.9

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1106210	A0A072U177	97.436	78	2	0	1	78	1	78	5.29e-45	148

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0020390	Msa1106210	0.804417	2.182394e-49	-8.615850e-47
Msa0068020	Msa1106210	0.845443	4.047934e-59	-8.615850e-47
Msa0615580	Msa1106210	0.819299	1.249010e-52	-8.615850e-47
Msa0672100	Msa1106210	0.813982	1.942667e-51	-8.615850e-47
Msa0693210	Msa1106210	0.800544	1.371550e-48	-8.615850e-47
Msa0699190	Msa1106210	0.822986	1.766040e-53	-8.615850e-47
Msa0183460	Msa1106210	0.840652	7.642018e-58	-8.615850e-47
Msa0191080	Msa1106210	0.800745	1.247690e-48	-8.615850e-47
Msa0194480	Msa1106210	0.801358	9.348183e-49	-8.615850e-47
Msa0385500	Msa1106210	0.800663	1.296626e-48	-8.615850e-47
Msa0389510	Msa1106210	0.841936	3.512218e-58	-8.615850e-47
Msa0408240	Msa1106210	-0.833461	5.263759e-56	-8.615850e-47
Msa0427860	Msa1106210	-0.826142	3.190575e-54	-8.615850e-47
Msa0474090	Msa1106210	-0.823003	1.749546e-53	-8.615850e-47
Msa1106210	Msa1149440	0.856967	2.247929e-62	-8.615850e-47
Msa1106210	Msa1165780	0.800045	1.732722e-48	-8.615850e-47
Msa1106210	Msa1184370	0.812064	5.115883e-51	-8.615850e-47
Msa1106210	Msa1227690	0.800176	1.629655e-48	-8.615850e-47
Msa1106210	Msa1296830	0.846477	2.119088e-59	-8.615850e-47
Msa1106210	Msa1450280	0.805285	1.437280e-49	-8.615850e-47
Msa0304590	Msa1106210	0.845220	4.651172e-59	-8.615850e-47
Msa0304660	Msa1106210	0.845390	4.183670e-59	-8.615850e-47
Msa0331700	Msa1106210	0.845530	3.834330e-59	-8.615850e-47
Msa0580230	Msa1106210	0.848751	5.021261e-60	-8.615850e-47
Msa0580280	Msa1106210	0.848174	7.251950e-60	-8.615850e-47
Msa0588260	Msa1106210	0.810719	1.002391e-50	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1106210	MtrunA17_Chr7g0238571	97.436	78	2	0	1	78	1	78	1.02e-48	148
Msa1106210	MtrunA17_Chr4g0009821	56.757	74	29	2	7	78	3	75	3.00e-18	71.2
Msa1106210	MtrunA17_Chr4g0009811	54.545	77	26	3	4	78	6	75	4.97e-16	65.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1106210	AT3G09390.2	70.370	81	21	3	1	78	1	81	3.85e-12	56.2
Msa1106210	AT3G09390.1	70.370	81	21	3	1	78	1	81	3.85e-12	56.2
Msa1106210	AT5G02380.1	70.000	80	19	3	1	78	1	77	3.34e-11	53.9

Find 39 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TATTAATGAAATAGTATTAT+TGG	0.126803	7_3:+45473129	Msa1106210:three_prime_UTR
TTTCAGCAGCACCTTCAAAT+TGG	0.237406	7_3:-45472784	None:intergenic
TGATAAGTGTGCTTTAACTA+TGG	0.256492	7_3:+45473065	Msa1106210:three_prime_UTR
TTCAGCAGCACCTTCAAATT+GGG	0.326201	7_3:-45472783	None:intergenic
ACAGCCAGTGCCGCATTTGC+AGG	0.352772	7_3:-45471988	None:intergenic
TGCAAATGCGGCACTGGCTG+TGG	0.361672	7_3:+45471990	Msa1106210:CDS
TTACACTCTAAAAGAGTGTT+TGG	0.364171	7_3:-45472998	None:intergenic
GATTCTGTGTAGCTCAAATC+AGG	0.372420	7_3:-45472716	None:intergenic
ATTTGAAGGTGCTGCTGAAA+TGG	0.388981	7_3:+45472787	Msa1106210:CDS
CATGGGTTGCAGTTGCAGTT+TGG	0.405629	7_3:-45472839	None:intergenic
TAGGTTCATTTGCAAGTGCA+TGG	0.421952	7_3:-45472857	None:intergenic
AGCACCTTCAAATTGGGGTT+TGG	0.422227	7_3:-45472777	None:intergenic
AGTGCCTGCAAATGCGGCAC+TGG	0.424055	7_3:+45471984	Msa1106210:CDS
CTGAAAATGTCTTGCTGTGG+TGG	0.438298	7_3:+45471945	Msa1106210:exon
TTTATGTGAACTCTAGTGTT+TGG	0.452157	7_3:+45472967	Msa1106210:three_prime_UTR
CATTAATAAGCAGAGATTGA+AGG	0.463732	7_3:-45473114	None:intergenic
TTAAGTTATTATCATCACTA+AGG	0.475609	7_3:-45472914	None:intergenic
TAAGTTATTATCATCACTAA+GGG	0.498544	7_3:-45472913	None:intergenic
AGGTTCATTTGCAAGTGCAT+GGG	0.498772	7_3:-45472856	None:intergenic
AAATGCGGCACTGGCTGTGG+AGG	0.501749	7_3:+45471993	Msa1106210:CDS
TCTGCCAAACCCCAATTTGA+AGG	0.501884	7_3:+45472773	Msa1106210:CDS
TTTGAAGGTGCTGCTGAAAT+GGG	0.503383	7_3:+45472788	Msa1106210:CDS
ATGAGAGTTTGAAGCAGAGA+CGG	0.543637	7_3:+45472883	Msa1106210:three_prime_UTR
TGAGAGTTTGAAGCAGAGAC+GGG	0.560395	7_3:+45472884	Msa1106210:three_prime_UTR
TCAGCAGCACCTTCAAATTG+GGG	0.564958	7_3:-45472782	None:intergenic
AACCACTGAGACCCTTGTGA+TGG	0.567822	7_3:+45472742	Msa1106210:CDS
ACCACTGAGACCCTTGTGAT+GGG	0.567834	7_3:+45472743	Msa1106210:CDS
GAGAATGATGGCTGCAAGTG+TGG	0.583748	7_3:+45472815	Msa1106210:CDS
CAGATGCAACTCCCATCACA+AGG	0.587599	7_3:-45472754	None:intergenic
TCTTGCTGTGGTGGAAACTG+TGG	0.591533	7_3:+45471954	Msa1106210:CDS
TGTGGTGGAAACTGTGGTTG+TGG	0.595875	7_3:+45471960	Msa1106210:CDS
TGTGGAAGTGCCTGCAAATG+CGG	0.600913	7_3:+45471978	Msa1106210:CDS
GAAATGGGTGCTGAGAATGA+TGG	0.610124	7_3:+45472803	Msa1106210:CDS
TCCCATCACAAGGGTCTCAG+TGG	0.626453	7_3:-45472744	None:intergenic
AATGCGGCACTGGCTGTGGA+GGG	0.639645	7_3:+45471994	Msa1106210:CDS
ATTCTGTGTAGCTCAAATCA+GGG	0.645627	7_3:-45472715	None:intergenic
CATCTGAAAATGTCTTGCTG+TGG	0.660819	7_3:+45471942	Msa1106210:exon
AAGTTATTATCATCACTAAG+GGG	0.690680	7_3:-45472912	None:intergenic
AGATGCAACTCCCATCACAA+GGG	0.706946	7_3:-45472753	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTTAATTCATTGATTATTTT+AGG	+	chr7_3:45472325-45472344	Msa1106210:intron	10.0%
!!!	TTAATTCATTGATTATTTTA+GGG	+	chr7_3:45472326-45472345	Msa1106210:intron	10.0%
!!!	TAGAAATTTTTAAGTAAAAA+AGG	-	chr7_3:45472581-45472600	None:intergenic	10.0%
!!	TAATTTAACAAAATATTTCT+AGG	+	chr7_3:45472606-45472625	Msa1106210:intron	10.0%
!!	TATTAATGAAATAGTATTAT+TGG	+	chr7_3:45473129-45473148	Msa1106210:three_prime_UTR	10.0%
!!!	TTTAATTCATTGATTATTTT+AGG	+	chr7_3:45472325-45472344	Msa1106210:intron	10.0%
!!!	TTAATTCATTGATTATTTTA+GGG	+	chr7_3:45472326-45472345	Msa1106210:intron	10.0%
!!!	TAGAAATTTTTAAGTAAAAA+AGG	-	chr7_3:45472581-45472600	None:intergenic	10.0%
!!	TAATTTAACAAAATATTTCT+AGG	+	chr7_3:45472606-45472625	Msa1106210:intron	10.0%
!!	TATTAATGAAATAGTATTAT+TGG	+	chr7_3:45473129-45473148	Msa1106210:three_prime_UTR	10.0%
!!!	TTCTTTTGATTTGATTTTTT+TGG	+	chr7_3:45472114-45472133	Msa1106210:intron	15.0%
!!!	TAATTCATTGATTATTTTAG+GGG	+	chr7_3:45472327-45472346	Msa1106210:intron	15.0%
!!	TAAAATTTAACTAAACCAAA+GGG	-	chr7_3:45472357-45472376	None:intergenic	15.0%
!!	TTAAAATTTAACTAAACCAA+AGG	-	chr7_3:45472358-45472377	None:intergenic	15.0%
!!!	TTCTTTTGATTTGATTTTTT+TGG	+	chr7_3:45472114-45472133	Msa1106210:intron	15.0%
!!!	TAATTCATTGATTATTTTAG+GGG	+	chr7_3:45472327-45472346	Msa1106210:intron	15.0%
!!	TAAAATTTAACTAAACCAAA+GGG	-	chr7_3:45472357-45472376	None:intergenic	15.0%
!!	TTAAAATTTAACTAAACCAA+AGG	-	chr7_3:45472358-45472377	None:intergenic	15.0%
!!!	TGAGGTTTTTGTATTTTTTT+GGG	+	chr7_3:45472233-45472252	Msa1106210:intron	20.0%
!!	AATTCTTCAAATTCAATTAG+AGG	-	chr7_3:45472297-45472316	None:intergenic	20.0%
!!	AAAATTTAACTAAACCAAAG+GGG	-	chr7_3:45472356-45472375	None:intergenic	20.0%
!!!	TGTATTTTTCATTTGCTTTA+TGG	+	chr7_3:45472480-45472499	Msa1106210:intron	20.0%
!!	TAAGTTATTATCATCACTAA+GGG	-	chr7_3:45472916-45472935	None:intergenic	20.0%
!!	TTAAGTTATTATCATCACTA+AGG	-	chr7_3:45472917-45472936	None:intergenic	20.0%
!!!	TGAGGTTTTTGTATTTTTTT+GGG	+	chr7_3:45472233-45472252	Msa1106210:intron	20.0%
!!	AATTCTTCAAATTCAATTAG+AGG	-	chr7_3:45472297-45472316	None:intergenic	20.0%
!!	AAAATTTAACTAAACCAAAG+GGG	-	chr7_3:45472356-45472375	None:intergenic	20.0%
!!!	TGTATTTTTCATTTGCTTTA+TGG	+	chr7_3:45472480-45472499	Msa1106210:intron	20.0%
!!	TAAGTTATTATCATCACTAA+GGG	-	chr7_3:45472916-45472935	None:intergenic	20.0%
!!	TTAAGTTATTATCATCACTA+AGG	-	chr7_3:45472917-45472936	None:intergenic	20.0%
!!!	GTCTCTCTGTTTTTTTTTTT+TGG	+	chr7_3:45472033-45472052	Msa1106210:intron	25.0%
!!!	GTGAGGTTTTTGTATTTTTT+TGG	+	chr7_3:45472232-45472251	Msa1106210:intron	25.0%
!!!	TTTTTGGGTAAATTGTTTCA+TGG	+	chr7_3:45472248-45472267	Msa1106210:intron	25.0%
!!!	TTTTGGGTAAATTGTTTCAT+GGG	+	chr7_3:45472249-45472268	Msa1106210:intron	25.0%
!	TTTGTTCAATTTCACAAAGA+TGG	+	chr7_3:45472450-45472469	Msa1106210:intron	25.0%
!!	AGTCAATTGTTGATTAAGAA+GGG	-	chr7_3:45472515-45472534	None:intergenic	25.0%
!!	TAGTCAATTGTTGATTAAGA+AGG	-	chr7_3:45472516-45472535	None:intergenic	25.0%
!	AAGTTATTATCATCACTAAG+GGG	-	chr7_3:45472915-45472934	None:intergenic	25.0%
!	TATCACAAAAATTGCTCAAA+GGG	-	chr7_3:45473050-45473069	None:intergenic	25.0%
!	TTATCACAAAAATTGCTCAA+AGG	-	chr7_3:45473051-45473070	None:intergenic	25.0%
!	ACTATGGTTGTAAAAATGTT+CGG	+	chr7_3:45473081-45473100	Msa1106210:three_prime_UTR	25.0%
!!!	GTCTCTCTGTTTTTTTTTTT+TGG	+	chr7_3:45472033-45472052	Msa1106210:intron	25.0%
!!!	GTGAGGTTTTTGTATTTTTT+TGG	+	chr7_3:45472232-45472251	Msa1106210:intron	25.0%
!!!	TTTTTGGGTAAATTGTTTCA+TGG	+	chr7_3:45472248-45472267	Msa1106210:intron	25.0%
!!!	TTTTGGGTAAATTGTTTCAT+GGG	+	chr7_3:45472249-45472268	Msa1106210:intron	25.0%
!	TTTGTTCAATTTCACAAAGA+TGG	+	chr7_3:45472450-45472469	Msa1106210:intron	25.0%
!!	AGTCAATTGTTGATTAAGAA+GGG	-	chr7_3:45472515-45472534	None:intergenic	25.0%
!!	TAGTCAATTGTTGATTAAGA+AGG	-	chr7_3:45472516-45472535	None:intergenic	25.0%
!	AAGTTATTATCATCACTAAG+GGG	-	chr7_3:45472915-45472934	None:intergenic	25.0%
!	TATCACAAAAATTGCTCAAA+GGG	-	chr7_3:45473050-45473069	None:intergenic	25.0%
!	TTATCACAAAAATTGCTCAA+AGG	-	chr7_3:45473051-45473070	None:intergenic	25.0%
!	ACTATGGTTGTAAAAATGTT+CGG	+	chr7_3:45473081-45473100	Msa1106210:three_prime_UTR	25.0%
	AAGAAACAGAAAACTTTCTC+TGG	-	chr7_3:45472099-45472118	None:intergenic	30.0%
!!!	ACCTTTTTTGATGAATTGCA+TGG	+	chr7_3:45472138-45472157	Msa1106210:intron	30.0%
	TCCATGCAATTCATCAAAAA+AGG	-	chr7_3:45472142-45472161	None:intergenic	30.0%
	TTTAACCATTCCTCTTATGT+TGG	+	chr7_3:45472175-45472194	Msa1106210:intron	30.0%
	TTAACCATTCCTCTTATGTT+GGG	+	chr7_3:45472176-45472195	Msa1106210:intron	30.0%
	TTTGGGTAAATTGTTTCATG+GGG	+	chr7_3:45472250-45472269	Msa1106210:intron	30.0%
	AACAAAACCTCAAAAGCTAA+TGG	-	chr7_3:45472436-45472455	None:intergenic	30.0%
	TTTCATTTGCTTTATGGCTT+TGG	+	chr7_3:45472486-45472505	Msa1106210:intron	30.0%
!	GCTACGTTTCAATTTTGTAT+TGG	+	chr7_3:45472555-45472574	Msa1106210:intron	30.0%
!!	TGCTTCAAACTCTCATTTTT+AGG	-	chr7_3:45472879-45472898	None:intergenic	30.0%
	TTTATGTGAACTCTAGTGTT+TGG	+	chr7_3:45472967-45472986	Msa1106210:three_prime_UTR	30.0%
!!	TTACACTCTAAAAGAGTGTT+TGG	-	chr7_3:45473001-45473020	None:intergenic	30.0%
	TGATAAGTGTGCTTTAACTA+TGG	+	chr7_3:45473065-45473084	Msa1106210:three_prime_UTR	30.0%
	CATTAATAAGCAGAGATTGA+AGG	-	chr7_3:45473117-45473136	None:intergenic	30.0%
	AAGAAACAGAAAACTTTCTC+TGG	-	chr7_3:45472099-45472118	None:intergenic	30.0%
!!!	ACCTTTTTTGATGAATTGCA+TGG	+	chr7_3:45472138-45472157	Msa1106210:intron	30.0%
	TCCATGCAATTCATCAAAAA+AGG	-	chr7_3:45472142-45472161	None:intergenic	30.0%
	TTTAACCATTCCTCTTATGT+TGG	+	chr7_3:45472175-45472194	Msa1106210:intron	30.0%
	TTAACCATTCCTCTTATGTT+GGG	+	chr7_3:45472176-45472195	Msa1106210:intron	30.0%
	TTTGGGTAAATTGTTTCATG+GGG	+	chr7_3:45472250-45472269	Msa1106210:intron	30.0%
	AACAAAACCTCAAAAGCTAA+TGG	-	chr7_3:45472436-45472455	None:intergenic	30.0%
	TTTCATTTGCTTTATGGCTT+TGG	+	chr7_3:45472486-45472505	Msa1106210:intron	30.0%
!	GCTACGTTTCAATTTTGTAT+TGG	+	chr7_3:45472555-45472574	Msa1106210:intron	30.0%
!!	TGCTTCAAACTCTCATTTTT+AGG	-	chr7_3:45472879-45472898	None:intergenic	30.0%
	TTTATGTGAACTCTAGTGTT+TGG	+	chr7_3:45472967-45472986	Msa1106210:three_prime_UTR	30.0%
!!	TTACACTCTAAAAGAGTGTT+TGG	-	chr7_3:45473001-45473020	None:intergenic	30.0%
	TGATAAGTGTGCTTTAACTA+TGG	+	chr7_3:45473065-45473084	Msa1106210:three_prime_UTR	30.0%
	CATTAATAAGCAGAGATTGA+AGG	-	chr7_3:45473117-45473136	None:intergenic	30.0%
!	TTTTCCCAACATAAGAGGAA+TGG	-	chr7_3:45472183-45472202	None:intergenic	35.0%
!	CACAATTTTCCCAACATAAG+AGG	-	chr7_3:45472188-45472207	None:intergenic	35.0%
!!	CACTTATTTTCTGTTGTGTG+AGG	+	chr7_3:45472215-45472234	Msa1106210:intron	35.0%
!!!	TGAGATTCCATTAGCTTTTG+AGG	+	chr7_3:45472426-45472445	Msa1106210:intron	35.0%
	ATTCTGTGTAGCTCAAATCA+GGG	-	chr7_3:45472718-45472737	None:intergenic	35.0%
!	TTTTCCCAACATAAGAGGAA+TGG	-	chr7_3:45472183-45472202	None:intergenic	35.0%
!	CACAATTTTCCCAACATAAG+AGG	-	chr7_3:45472188-45472207	None:intergenic	35.0%
!!	CACTTATTTTCTGTTGTGTG+AGG	+	chr7_3:45472215-45472234	Msa1106210:intron	35.0%
!!!	TGAGATTCCATTAGCTTTTG+AGG	+	chr7_3:45472426-45472445	Msa1106210:intron	35.0%
	ATTCTGTGTAGCTCAAATCA+GGG	-	chr7_3:45472718-45472737	None:intergenic	35.0%
	CATCTGAAAATGTCTTGCTG+TGG	+	chr7_3:45471942-45471961	Msa1106210:exon	40.0%
!!!	TATTTTAGGGGTATCCCCTT+TGG	+	chr7_3:45472339-45472358	Msa1106210:intron	40.0%
	GATTCTGTGTAGCTCAAATC+AGG	-	chr7_3:45472719-45472738	None:intergenic	40.0%
	TTCAGCAGCACCTTCAAATT+GGG	-	chr7_3:45472786-45472805	None:intergenic	40.0%
	TTTCAGCAGCACCTTCAAAT+TGG	-	chr7_3:45472787-45472806	None:intergenic	40.0%
!!	ATTTGAAGGTGCTGCTGAAA+TGG	+	chr7_3:45472787-45472806	Msa1106210:CDS	40.0%
!!	TTTGAAGGTGCTGCTGAAAT+GGG	+	chr7_3:45472788-45472807	Msa1106210:CDS	40.0%
	AGGTTCATTTGCAAGTGCAT+GGG	-	chr7_3:45472859-45472878	None:intergenic	40.0%
	TAGGTTCATTTGCAAGTGCA+TGG	-	chr7_3:45472860-45472879	None:intergenic	40.0%
!	ATGAGAGTTTGAAGCAGAGA+CGG	+	chr7_3:45472883-45472902	Msa1106210:three_prime_UTR	40.0%
	CATCTGAAAATGTCTTGCTG+TGG	+	chr7_3:45471942-45471961	Msa1106210:exon	40.0%
!!!	TATTTTAGGGGTATCCCCTT+TGG	+	chr7_3:45472339-45472358	Msa1106210:intron	40.0%
	GATTCTGTGTAGCTCAAATC+AGG	-	chr7_3:45472719-45472738	None:intergenic	40.0%
	TTCAGCAGCACCTTCAAATT+GGG	-	chr7_3:45472786-45472805	None:intergenic	40.0%
	TTTCAGCAGCACCTTCAAAT+TGG	-	chr7_3:45472787-45472806	None:intergenic	40.0%
!!	ATTTGAAGGTGCTGCTGAAA+TGG	+	chr7_3:45472787-45472806	Msa1106210:CDS	40.0%
!!	TTTGAAGGTGCTGCTGAAAT+GGG	+	chr7_3:45472788-45472807	Msa1106210:CDS	40.0%
	AGGTTCATTTGCAAGTGCAT+GGG	-	chr7_3:45472859-45472878	None:intergenic	40.0%
	TAGGTTCATTTGCAAGTGCA+TGG	-	chr7_3:45472860-45472879	None:intergenic	40.0%
!	ATGAGAGTTTGAAGCAGAGA+CGG	+	chr7_3:45472883-45472902	Msa1106210:three_prime_UTR	40.0%
!	CTGAAAATGTCTTGCTGTGG+TGG	+	chr7_3:45471945-45471964	Msa1106210:exon	45.0%
	AGATGCAACTCCCATCACAA+GGG	-	chr7_3:45472756-45472775	None:intergenic	45.0%
	TCTGCCAAACCCCAATTTGA+AGG	+	chr7_3:45472773-45472792	Msa1106210:CDS	45.0%
	AGCACCTTCAAATTGGGGTT+TGG	-	chr7_3:45472780-45472799	None:intergenic	45.0%
	TCAGCAGCACCTTCAAATTG+GGG	-	chr7_3:45472785-45472804	None:intergenic	45.0%
!!	GAAATGGGTGCTGAGAATGA+TGG	+	chr7_3:45472803-45472822	Msa1106210:CDS	45.0%
!	TGAGAGTTTGAAGCAGAGAC+GGG	+	chr7_3:45472884-45472903	Msa1106210:three_prime_UTR	45.0%
!	CTGAAAATGTCTTGCTGTGG+TGG	+	chr7_3:45471945-45471964	Msa1106210:exon	45.0%
	AGATGCAACTCCCATCACAA+GGG	-	chr7_3:45472756-45472775	None:intergenic	45.0%
	TCTGCCAAACCCCAATTTGA+AGG	+	chr7_3:45472773-45472792	Msa1106210:CDS	45.0%
	AGCACCTTCAAATTGGGGTT+TGG	-	chr7_3:45472780-45472799	None:intergenic	45.0%
	TCAGCAGCACCTTCAAATTG+GGG	-	chr7_3:45472785-45472804	None:intergenic	45.0%
!!	GAAATGGGTGCTGAGAATGA+TGG	+	chr7_3:45472803-45472822	Msa1106210:CDS	45.0%
!	TGAGAGTTTGAAGCAGAGAC+GGG	+	chr7_3:45472884-45472903	Msa1106210:three_prime_UTR	45.0%
!	TCTTGCTGTGGTGGAAACTG+TGG	+	chr7_3:45471954-45471973	Msa1106210:CDS	50.0%
!	TGTGGTGGAAACTGTGGTTG+TGG	+	chr7_3:45471960-45471979	Msa1106210:CDS	50.0%
!!	TGTGGAAGTGCCTGCAAATG+CGG	+	chr7_3:45471978-45471997	Msa1106210:CDS	50.0%
	AACCACTGAGACCCTTGTGA+TGG	+	chr7_3:45472742-45472761	Msa1106210:CDS	50.0%
	ACCACTGAGACCCTTGTGAT+GGG	+	chr7_3:45472743-45472762	Msa1106210:CDS	50.0%
	CAGATGCAACTCCCATCACA+AGG	-	chr7_3:45472757-45472776	None:intergenic	50.0%
	GAGAATGATGGCTGCAAGTG+TGG	+	chr7_3:45472815-45472834	Msa1106210:CDS	50.0%
!	CATGGGTTGCAGTTGCAGTT+TGG	-	chr7_3:45472842-45472861	None:intergenic	50.0%
!	TCTTGCTGTGGTGGAAACTG+TGG	+	chr7_3:45471954-45471973	Msa1106210:CDS	50.0%
!	TGTGGTGGAAACTGTGGTTG+TGG	+	chr7_3:45471960-45471979	Msa1106210:CDS	50.0%
!!	TGTGGAAGTGCCTGCAAATG+CGG	+	chr7_3:45471978-45471997	Msa1106210:CDS	50.0%
	AACCACTGAGACCCTTGTGA+TGG	+	chr7_3:45472742-45472761	Msa1106210:CDS	50.0%
	ACCACTGAGACCCTTGTGAT+GGG	+	chr7_3:45472743-45472762	Msa1106210:CDS	50.0%
	CAGATGCAACTCCCATCACA+AGG	-	chr7_3:45472757-45472776	None:intergenic	50.0%
	GAGAATGATGGCTGCAAGTG+TGG	+	chr7_3:45472815-45472834	Msa1106210:CDS	50.0%
!	CATGGGTTGCAGTTGCAGTT+TGG	-	chr7_3:45472842-45472861	None:intergenic	50.0%
	TCCCATCACAAGGGTCTCAG+TGG	-	chr7_3:45472747-45472766	None:intergenic	55.0%
	TCCCATCACAAGGGTCTCAG+TGG	-	chr7_3:45472747-45472766	None:intergenic	55.0%
	AGTGCCTGCAAATGCGGCAC+TGG	+	chr7_3:45471984-45472003	Msa1106210:CDS	60.0%
	ACAGCCAGTGCCGCATTTGC+AGG	-	chr7_3:45471991-45472010	None:intergenic	60.0%
!!	TGCAAATGCGGCACTGGCTG+TGG	+	chr7_3:45471990-45472009	Msa1106210:CDS	60.0%
!!	AAATGCGGCACTGGCTGTGG+AGG	+	chr7_3:45471993-45472012	Msa1106210:CDS	60.0%
!!	AATGCGGCACTGGCTGTGGA+GGG	+	chr7_3:45471994-45472013	Msa1106210:CDS	60.0%
	AGTGCCTGCAAATGCGGCAC+TGG	+	chr7_3:45471984-45472003	Msa1106210:CDS	60.0%
	ACAGCCAGTGCCGCATTTGC+AGG	-	chr7_3:45471991-45472010	None:intergenic	60.0%
!!	TGCAAATGCGGCACTGGCTG+TGG	+	chr7_3:45471990-45472009	Msa1106210:CDS	60.0%
!!	AAATGCGGCACTGGCTGTGG+AGG	+	chr7_3:45471993-45472012	Msa1106210:CDS	60.0%
!!	AATGCGGCACTGGCTGTGGA+GGG	+	chr7_3:45471994-45472013	Msa1106210:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	45471862	45473152	45471862	ID=Msa1106210;Name=Msa1106210
chr7_3	mRNA	45471862	45473152	45471862	ID=Msa1106210-mRNA-1;Parent=Msa1106210;Name=Msa1106210-mRNA-1;_AED=0.00;_eAED=0.00;_QI=89\|1\|1\|1\|1\|1\|2\|278\|78
chr7_3	exon	45471862	45472015	45471862	ID=Msa1106210-mRNA-1:exon:9381;Parent=Msa1106210-mRNA-1
chr7_3	exon	45472703	45473152	45472703	ID=Msa1106210-mRNA-1:exon:9382;Parent=Msa1106210-mRNA-1
chr7_3	five_prime_UTR	45471862	45471950	45471862	ID=Msa1106210-mRNA-1:five_prime_utr;Parent=Msa1106210-mRNA-1
chr7_3	CDS	45471951	45472015	45471951	ID=Msa1106210-mRNA-1:cds;Parent=Msa1106210-mRNA-1
chr7_3	CDS	45472703	45472874	45472703	ID=Msa1106210-mRNA-1:cds;Parent=Msa1106210-mRNA-1
chr7_3	three_prime_UTR	45472875	45473152	45472875	ID=Msa1106210-mRNA-1:three_prime_utr;Parent=Msa1106210-mRNA-1

Gene Sequence	>Msa1106210 ATGTCTTGCTGTGGTGGAAACTGTGGTTGTGGAAGTGCCTGCAAATGCGGCACTGGCTGTGGAGGCTGCAAGATGTACCCTGATTTGAGCTACACAGAATCAACAACCACTGAGACCCTTGTGATGGGAGTTGCATCTGCCAAACCCCAATTTGAAGGTGCTGCTGAAATGGGTGCTGAGAATGATGGCTGCAAGTGTGGTCCAAACTGCAACTGCAACCCATGCACTTGCAAATGA
Protein sequence	>Msa1106210 MSCCGGNCGCGSACKCGTGCGGCKMYPDLSYTESTTTETLVMGVASAKPQFEGAAEMGAENDGCKCGPNCNCNPCTCK*