AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0304590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0304590 MtrunA17_Chr2g0333001 99.320 147 1 0 61 207 1 147 7.58e-106 300
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0304590 AT1G15370.1 87.671 146 18 0 61 206 1 146 3.59e-93 269

Find 56 sgRNAs with CRISPR-Local

Find 487 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGTTAATGCAAGTATTTA+TGG 0.228862 2_3:-61933781 None:intergenic
CCTACACTGGCGTTCTTTCT+TGG 0.246824 2_3:+61930609 Msa0304590:CDS
TAAAGGGTATCTCAGTAATT+TGG 0.251980 2_3:+61928234 Msa0304590:intron
CGCCGTTTCCTTGATAAGTA+TGG 0.286828 2_3:+61933017 Msa0304590:CDS
CAAAGAGGTTTGCCTGGCTT+TGG 0.366671 2_3:-61933710 None:intergenic
ACTAGGAGCTGATAATCTTA+AGG 0.380283 2_3:+61930636 Msa0304590:CDS
CAAGGAAACGGCGCTCAGTT+GGG 0.381526 2_3:-61933007 None:intergenic
ATGTTAATGCAAGTATTTAT+GGG 0.382157 2_3:-61933780 None:intergenic
TGGAAGAATTTGCTTGTGTT+TGG 0.393493 2_3:+61933037 Msa0304590:CDS
TCTTCTAAGTATATGTTTGT+TGG 0.414106 2_3:+61933934 Msa0304590:intron
CAGTGTAGGCGCTCCTCTGC+AGG 0.428518 2_3:-61930595 None:intergenic
TACAATAACCTCAGCTGTAA+AGG 0.434603 2_3:+61932968 Msa0304590:CDS
CGTTCTTTCTTGGTCAAACT+AGG 0.434756 2_3:+61930619 Msa0304590:CDS
CTAGGAGCTGATAATCTTAA+GGG 0.435141 2_3:+61930637 Msa0304590:CDS
GAAGGGATATCTGGAAAATA+CGG 0.437154 2_3:+61933551 Msa0304590:intron
AAATTCTTCCATACTTATCA+AGG 0.445192 2_3:-61933025 None:intergenic
TGTGTTTGGATGAAATTGTA+TGG 0.456773 2_3:+61933051 Msa0304590:CDS
TCAAGGAAACGGCGCTCAGT+TGG 0.462763 2_3:-61933008 None:intergenic
TTTGTTCTCTAGAATGGTGC+AGG 0.468911 2_3:+61933741 Msa0304590:three_prime_UTR
ATCATACAAAGAGGTTTGCC+TGG 0.471740 2_3:-61933716 None:intergenic
TTCCATACTTATCAAGGAAA+CGG 0.477616 2_3:-61933019 None:intergenic
CTTACTTGTGGCAAGCAACT+AGG 0.484838 2_3:-61930678 None:intergenic
AGCATCTTGTGACTTAGAAA+TGG 0.487141 2_3:+61933680 Msa0304590:three_prime_UTR
GTATCTCAGTAATTTGGAAC+AGG 0.490425 2_3:+61928240 Msa0304590:CDS
AAGGAAACGGCGCTCAGTTG+GGG 0.501938 2_3:-61933006 None:intergenic
GAGGATATTGCCCTCGGCGT+TGG 0.506903 2_3:-61928341 None:intergenic
CTCATTCAAAACTCAGTAGG+AGG 0.512002 2_3:-61933609 None:intergenic
ATAGAATCAAGAGATTGATA+AGG 0.521125 2_3:+61933580 Msa0304590:CDS
ATTGAGCTGTTCTCTAGAAG+TGG 0.524511 2_3:+61925424 Msa0304590:CDS
GATGTCAGTATATACGTTGT+GGG 0.529870 2_3:+61931308 Msa0304590:CDS
TTTCTCATTCAAAACTCAGT+AGG 0.534349 2_3:-61933612 None:intergenic
TCAGCTGTAAAGGATGTATG+TGG 0.535855 2_3:+61932978 Msa0304590:CDS
TATATTGTATACACAGTACT+TGG 0.537335 2_3:+61931284 Msa0304590:CDS
CAGTATATACGTTGTGGGGA+AGG 0.538675 2_3:+61931313 Msa0304590:CDS
AATGGCATGTAACCAAAGCC+AGG 0.551466 2_3:+61933698 Msa0304590:three_prime_UTR
CTGCAGAGGAGCGCCTACAC+TGG 0.552563 2_3:+61930596 Msa0304590:CDS
TTTGGATGAAATTGTATGGA+AGG 0.577163 2_3:+61933055 Msa0304590:CDS
TTCGATGAGGATATTGCCCT+CGG 0.588896 2_3:-61928347 None:intergenic
AGATGTCAGTATATACGTTG+TGG 0.591952 2_3:+61931307 Msa0304590:CDS
TCAAACTCAACCTTGCTCAC+CGG 0.594243 2_3:-61928277 None:intergenic
GAACAAAATATCATACAAAG+AGG 0.595753 2_3:-61933725 None:intergenic
GAATGATGTTGGTGAAGCAT+TGG 0.595928 2_3:+61925446 Msa0304590:CDS
CTCTAGAAGTGGAATGATGT+TGG 0.595935 2_3:+61925435 Msa0304590:CDS
AGACAAGAAGCTGTTGCACA+TGG 0.596739 2_3:+61925391 Msa0304590:CDS
CCAAGAAAGAACGCCAGTGT+AGG 0.602222 2_3:-61930609 None:intergenic
TCTCTAGAATGGTGCAGGCG+AGG 0.603839 2_3:+61933746 Msa0304590:three_prime_UTR
ATGTCAGTATATACGTTGTG+GGG 0.608096 2_3:+61931309 Msa0304590:CDS
AGGAAACGGCGCTCAGTTGG+GGG 0.618275 2_3:-61933005 None:intergenic
ACATACATCCTTTACAGCTG+AGG 0.624977 2_3:-61932976 None:intergenic
TTGGTGAAGCATTGGCCACA+TGG 0.626150 2_3:+61925454 Msa0304590:CDS
CAGCTGTAAAGGATGTATGT+GGG 0.637321 2_3:+61932979 Msa0304590:CDS
AGTGTACTCACCGTTCGATG+AGG 0.647564 2_3:-61928360 None:intergenic
GAAAATAAACACATTGCACA+AGG 0.664585 2_3:-61933858 None:intergenic
AAAACGGAATATGATCCTTG+CGG 0.685453 2_3:+61928309 Msa0304590:CDS
AGGGCAATATCCTCATCGAA+CGG 0.685734 2_3:+61928350 Msa0304590:CDS
AATCTGCAGTTTGAGTCGTG+TGG 0.747932 2_3:+61933655 Msa0304590:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAATTGAGATTAATA+AGG - chr2_3:61926226-61926245 None:intergenic 10.0%
!! TTGAAAAAGAAAATATATAA+AGG + chr2_3:61928217-61928236 Msa0304590:intron 10.0%
!! TGAAAAAGAAAATATATAAA+GGG + chr2_3:61928218-61928237 Msa0304590:intron 10.0%
!! ATTATCATTAATGAAAAATT+TGG + chr2_3:61931013-61931032 Msa0304590:intron 10.0%
!! TTAAATTTATTCAAATAAGA+CGG - chr2_3:61933321-61933340 None:intergenic 10.0%
!! ATCTTTGATCTTTAAATATA+TGG + chr2_3:61925787-61925806 Msa0304590:intron 15.0%
!! AATAAAAAGATGATAAAATG+AGG - chr2_3:61928429-61928448 None:intergenic 15.0%
!!! GTTTGAAATTTTGATTATAT+TGG + chr2_3:61928492-61928511 Msa0304590:intron 15.0%
!!! TTTTTTTTGTTTTGAAAACT+CGG + chr2_3:61929369-61929388 Msa0304590:intron 15.0%
!!! TATTAAACAGTATTTTATGT+TGG - chr2_3:61929812-61929831 None:intergenic 15.0%
!!! TTTTGACTATGTTTTAATTT+TGG + chr2_3:61929950-61929969 Msa0304590:intron 15.0%
!!! TTTGACTATGTTTTAATTTT+GGG + chr2_3:61929951-61929970 Msa0304590:intron 15.0%
!! TATCCTATTAGAAATAAATA+GGG + chr2_3:61931579-61931598 Msa0304590:intron 15.0%
!! AAATTCTGTAATTGTATTAA+TGG - chr2_3:61932601-61932620 None:intergenic 15.0%
!! TTAAATATGTATACTATTCT+TGG - chr2_3:61932725-61932744 None:intergenic 15.0%
!! ACATATTTAATCAAAAAACA+AGG + chr2_3:61932735-61932754 Msa0304590:intron 15.0%
!! TGTAACTTAATGATCATATA+TGG - chr2_3:61926160-61926179 None:intergenic 20.0%
!! TTATTGCAAATTAGTTAACT+TGG + chr2_3:61926244-61926263 Msa0304590:intron 20.0%
!! AAAAGAAAATTGATGTCAAA+TGG + chr2_3:61926493-61926512 Msa0304590:intron 20.0%
!! AAAGAAAATTGATGTCAAAT+GGG + chr2_3:61926494-61926513 Msa0304590:intron 20.0%
!! AACAAACAAAATGACAATAA+TGG - chr2_3:61928000-61928019 None:intergenic 20.0%
!!! ATTATGACCTATTTAGATTT+TGG - chr2_3:61928160-61928179 None:intergenic 20.0%
!! ATTACACTTAATTATGTCAA+AGG - chr2_3:61928191-61928210 None:intergenic 20.0%
!! TGAAAACAACTTAAGATTTA+GGG - chr2_3:61928563-61928582 None:intergenic 20.0%
!! ATGAAAACAACTTAAGATTT+AGG - chr2_3:61928564-61928583 None:intergenic 20.0%
!! TAACAAAAGATAAAATGAAG+TGG - chr2_3:61928656-61928675 None:intergenic 20.0%
!! AAAATGTATCATGTATAATC+TGG - chr2_3:61928808-61928827 None:intergenic 20.0%
!! AGGATAATATTAGTAAAGTA+AGG - chr2_3:61929751-61929770 None:intergenic 20.0%
!!! GGATGTTTTTTTTAATTTCA+TGG + chr2_3:61929863-61929882 Msa0304590:intron 20.0%
!! TTTCATGATGTTTAAATTTC+AGG + chr2_3:61929895-61929914 Msa0304590:intron 20.0%
!! AAATGTTGTTAGAAAGTAAA+TGG + chr2_3:61930450-61930469 Msa0304590:intron 20.0%
!! AATAACTAAAATTTAGTCCT+TGG - chr2_3:61930819-61930838 None:intergenic 20.0%
!! TTATTAGAATTCTATTTGCA+AGG + chr2_3:61930834-61930853 Msa0304590:intron 20.0%
!! TTCATATAAACAGATTTCAA+CGG - chr2_3:61930868-61930887 None:intergenic 20.0%
!!! GACATAATTTTCAAAAATGA+AGG - chr2_3:61931178-61931197 None:intergenic 20.0%
!! TAAATCACTGTTTACTAAAA+GGG - chr2_3:61931226-61931245 None:intergenic 20.0%
!! ATAAATCACTGTTTACTAAA+AGG - chr2_3:61931227-61931246 None:intergenic 20.0%
!!! CAATCTTTTTTATTTGATGA+CGG + chr2_3:61931374-61931393 Msa0304590:intron 20.0%
!!! TTTATTTCTAATAGGATACA+GGG - chr2_3:61931577-61931596 None:intergenic 20.0%
!!! ATTTATTTCTAATAGGATAC+AGG - chr2_3:61931578-61931597 None:intergenic 20.0%
!! GTATCCTATTAGAAATAAAT+AGG + chr2_3:61931578-61931597 Msa0304590:intron 20.0%
!! AGTATTCTATCTTTGTAATT+GGG - chr2_3:61931611-61931630 None:intergenic 20.0%
!! TAGTATTCTATCTTTGTAAT+TGG - chr2_3:61931612-61931631 None:intergenic 20.0%
!!! TTGTTATTTAAGAGAGAATT+GGG - chr2_3:61931673-61931692 None:intergenic 20.0%
!!! ATGTGTTGATTATATTTTGT+TGG + chr2_3:61931887-61931906 Msa0304590:intron 20.0%
!! TTAATGGAAAAACAATTACA+AGG - chr2_3:61932585-61932604 None:intergenic 20.0%
!! ATGTTAATGCAAGTATTTAT+GGG - chr2_3:61933783-61933802 None:intergenic 20.0%
!! AATGTTAATGCAAGTATTTA+TGG - chr2_3:61933784-61933803 None:intergenic 20.0%
!!! TGTTTATTTTCACTCTTTTT+TGG + chr2_3:61933870-61933889 Msa0304590:three_prime_UTR 20.0%
! GGGAAAATATTCTATATAAG+TGG + chr2_3:61925484-61925503 Msa0304590:intron 25.0%
! ATGGAAATTGATTAAGTGAT+GGG - chr2_3:61925534-61925553 None:intergenic 25.0%
! TATGGAAATTGATTAAGTGA+TGG - chr2_3:61925535-61925554 None:intergenic 25.0%
! GCATTAAGTTTGAATACAAA+AGG - chr2_3:61925963-61925982 None:intergenic 25.0%
! ATTAAGTTACATGTGATAGT+AGG + chr2_3:61926169-61926188 Msa0304590:intron 25.0%
! AATTGAGAAAAATCAAACCT+GGG + chr2_3:61926446-61926465 Msa0304590:intron 25.0%
!! TCAATTTTCTTTTTCTTGTC+TGG - chr2_3:61926486-61926505 None:intergenic 25.0%
! TTGACATATTTGAATTCTTG+AGG + chr2_3:61927394-61927413 Msa0304590:intron 25.0%
! ATATTCAGCAGTTATGATTA+AGG + chr2_3:61927436-61927455 Msa0304590:intron 25.0%
! TATTCAGCAGTTATGATTAA+GGG + chr2_3:61927437-61927456 Msa0304590:intron 25.0%
! ACATGAACCAAAATCTAAAT+AGG + chr2_3:61928150-61928169 Msa0304590:intron 25.0%
! AGTTTGATATCAGAGAAAAA+CGG + chr2_3:61928293-61928312 Msa0304590:CDS 25.0%
!!! GGTTTAGCTTGATTTTTAAT+AGG + chr2_3:61928513-61928532 Msa0304590:intron 25.0%
!! AAAATGAAGTGGAATTGTTT+TGG - chr2_3:61928645-61928664 None:intergenic 25.0%
!!! GCTATTATCATATTAGTCTT+AGG - chr2_3:61928769-61928788 None:intergenic 25.0%
!! GAAGCTTTAATAAAATACCT+TGG - chr2_3:61929240-61929259 None:intergenic 25.0%
! ATTTCTCTTTAATCAGATTG+AGG + chr2_3:61929262-61929281 Msa0304590:intron 25.0%
! TTTCTCTTTAATCAGATTGA+GGG + chr2_3:61929263-61929282 Msa0304590:intron 25.0%
! TCTGATATTTATTGTATCAC+TGG - chr2_3:61929328-61929347 None:intergenic 25.0%
! AAATATCAGAGAATACACTA+TGG + chr2_3:61929338-61929357 Msa0304590:intron 25.0%
!! TTTTCTCTATCGCAATTAAA+AGG + chr2_3:61929510-61929529 Msa0304590:intron 25.0%
! TTTCTCTATCGCAATTAAAA+GGG + chr2_3:61929511-61929530 Msa0304590:intron 25.0%
!!! TGTTTTAATTTCAGTTTGCA+TGG + chr2_3:61929919-61929938 Msa0304590:intron 25.0%
!!! TAATTTTGGGATGTTCTTTT+TGG + chr2_3:61929964-61929983 Msa0304590:intron 25.0%
! AATGATTGATGAATGAATCT+TGG + chr2_3:61930070-61930089 Msa0304590:intron 25.0%
!!! GTTTCTTTTTTGAAAAACAG+TGG + chr2_3:61930294-61930313 Msa0304590:intron 25.0%
!! AATTTTACTTTGTATGTGAG+TGG - chr2_3:61930428-61930447 None:intergenic 25.0%
!! AGTTCTGATAATCAAAAAGT+TGG - chr2_3:61930539-61930558 None:intergenic 25.0%
! GTATGAATGTATATCTTACA+TGG + chr2_3:61930740-61930759 Msa0304590:intron 25.0%
! ATGGATAAATTACCTTATCT+AGG + chr2_3:61930759-61930778 Msa0304590:intron 25.0%
! AAAAATTTGGAAAAGAGTTG+TGG + chr2_3:61931026-61931045 Msa0304590:intron 25.0%
!!! ATCTGTTACTGATTTTTGAT+GGG - chr2_3:61931085-61931104 None:intergenic 25.0%
!!! TATCTGTTACTGATTTTTGA+TGG - chr2_3:61931086-61931105 None:intergenic 25.0%
! TTCTACTTCTTATCTTTATC+AGG + chr2_3:61931255-61931274 Msa0304590:intron 25.0%
! TATATTGTATACACAGTACT+TGG + chr2_3:61931284-61931303 Msa0304590:CDS 25.0%
! CGTCATCAAATAAAAAAGAT+TGG - chr2_3:61931376-61931395 None:intergenic 25.0%
!!! TTTTATTTGATGACGGTAAA+TGG + chr2_3:61931381-61931400 Msa0304590:intron 25.0%
!!! TGTCCCTATTTATTTCTAAT+AGG - chr2_3:61931585-61931604 None:intergenic 25.0%
! GTATTCTATCTTTGTAATTG+GGG - chr2_3:61931610-61931629 None:intergenic 25.0%
!! TGTTATTTAAGAGAGAATTG+GGG - chr2_3:61931672-61931691 None:intergenic 25.0%
!!! CTTGTTATTTAAGAGAGAAT+TGG - chr2_3:61931674-61931693 None:intergenic 25.0%
! CAAAATATAATCAACACATC+AGG - chr2_3:61931886-61931905 None:intergenic 25.0%
! AATTCATTTCTAAACGAGAA+TGG - chr2_3:61932134-61932153 None:intergenic 25.0%
!! CTAGTTTATCATCTTTTCTA+GGG - chr2_3:61932160-61932179 None:intergenic 25.0%
! GATGATAAACTAGCTATTAA+AGG + chr2_3:61932167-61932186 Msa0304590:intron 25.0%
! ATATGCTTATTTAAGTGAGA+AGG + chr2_3:61932414-61932433 Msa0304590:intron 25.0%
! ACAAAATAACAAACTGATAG+TGG - chr2_3:61932537-61932556 None:intergenic 25.0%
! AATGGAACAGTGAAATAATA+AGG - chr2_3:61932638-61932657 None:intergenic 25.0%
! AAGTTTAGTTAGATTCTGAT+AGG - chr2_3:61932679-61932698 None:intergenic 25.0%
! ATTTGGAAAAACCTATATGT+TGG + chr2_3:61932860-61932879 Msa0304590:intron 25.0%
! AAATTCTTCCATACTTATCA+AGG - chr2_3:61933028-61933047 None:intergenic 25.0%
!! ATCTTTTAGTAAACATTGTC+CGG - chr2_3:61933093-61933112 None:intergenic 25.0%
! CTAAGGTAAGTAAAATGAAT+GGG - chr2_3:61933146-61933165 None:intergenic 25.0%
!! TCTAAGGTAAGTAAAATGAA+TGG - chr2_3:61933147-61933166 None:intergenic 25.0%
! CATAAAATGATGTTTCTCTA+AGG - chr2_3:61933163-61933182 None:intergenic 25.0%
!! AAGTTTTGCATGAAAATATG+GGG - chr2_3:61933387-61933406 None:intergenic 25.0%
!! CAAGTTTTGCATGAAAATAT+GGG - chr2_3:61933388-61933407 None:intergenic 25.0%
! AGATGCAAAAATATACAGAT+TGG - chr2_3:61933452-61933471 None:intergenic 25.0%
! ATAGAATCAAGAGATTGATA+AGG + chr2_3:61933580-61933599 Msa0304590:CDS 25.0%
! GAACAAAATATCATACAAAG+AGG - chr2_3:61933728-61933747 None:intergenic 25.0%
!!! TGATATTTTGTTCTCTAGAA+TGG + chr2_3:61933735-61933754 Msa0304590:three_prime_UTR 25.0%
! TCTTCTAAGTATATGTTTGT+TGG + chr2_3:61933934-61933953 Msa0304590:intron 25.0%
!! ACACTACTCTAAAACTGATA+TGG - chr2_3:61925553-61925572 None:intergenic 30.0%
!! TTATTTCTGCAAGAGTGATA+AGG + chr2_3:61925588-61925607 Msa0304590:intron 30.0%
CAAAGATTACATGCTTAGTT+AGG - chr2_3:61925774-61925793 None:intergenic 30.0%
AATAAGGCAAGAGAATTGTT+AGG - chr2_3:61926210-61926229 None:intergenic 30.0%
ATTTATATATCGTCTCCTCA+GGG - chr2_3:61926351-61926370 None:intergenic 30.0%
TATTTATATATCGTCTCCTC+AGG - chr2_3:61926352-61926371 None:intergenic 30.0%
ATACTACATCAACTGATGTA+TGG + chr2_3:61926394-61926413 Msa0304590:intron 30.0%
CAATTGAGAAAAATCAAACC+TGG + chr2_3:61926445-61926464 Msa0304590:intron 30.0%
TTGCTAGAATTGAAACTGTA+AGG + chr2_3:61926631-61926650 Msa0304590:intron 30.0%
!! ATGCTGACTTTACATCTAAA+TGG - chr2_3:61926698-61926717 None:intergenic 30.0%
GTAAAGTCAGCATTTCTAAA+TGG + chr2_3:61926705-61926724 Msa0304590:intron 30.0%
AATTGCTGGGAAAGAAAATA+TGG + chr2_3:61926773-61926792 Msa0304590:intron 30.0%
! AGCACTATATGGATTAAAAC+AGG + chr2_3:61926812-61926831 Msa0304590:intron 30.0%
TATGTTCAGAAACTTTCTGA+TGG + chr2_3:61926915-61926934 Msa0304590:intron 30.0%
AACTAAGAAGAAACTAAAGC+AGG + chr2_3:61927010-61927029 Msa0304590:intron 30.0%
ACTTTCATTCTTCTTAGGAA+TGG + chr2_3:61927058-61927077 Msa0304590:intron 30.0%
GAATTTGTGAAATTGAAAGC+TGG + chr2_3:61927080-61927099 Msa0304590:intron 30.0%
ATGTATCAGCAGAAATACAT+TGG + chr2_3:61927110-61927129 Msa0304590:intron 30.0%
TCAGCAATTTGTAGTTATGT+GGG - chr2_3:61927351-61927370 None:intergenic 30.0%
ATCAGCAATTTGTAGTTATG+TGG - chr2_3:61927352-61927371 None:intergenic 30.0%
ACATAACTACAAATTGCTGA+TGG + chr2_3:61927351-61927370 Msa0304590:intron 30.0%
GAATTCTTGAGGAAGAAATT+AGG + chr2_3:61927405-61927424 Msa0304590:intron 30.0%
ATTCAGCAGTTATGATTAAG+GGG + chr2_3:61927438-61927457 Msa0304590:intron 30.0%
TGATTGTTCTAACAAGTTCA+AGG + chr2_3:61927834-61927853 Msa0304590:intron 30.0%
!! AATGACAATAATGGATCTAG+TGG - chr2_3:61927991-61928010 None:intergenic 30.0%
! TATTCATTGCATTAGCTTGA+TGG - chr2_3:61928042-61928061 None:intergenic 30.0%
!! TAAAGGGTATCTCAGTAATT+TGG + chr2_3:61928234-61928253 Msa0304590:intron 30.0%
TATATAGATCAGAGAGAGAT+CGG - chr2_3:61928386-61928405 None:intergenic 30.0%
TTATACATAAGCGCTTATCA+TGG + chr2_3:61928686-61928705 Msa0304590:intron 30.0%
CAAAATAAGTTGTTTATCCG+AGG + chr2_3:61928717-61928736 Msa0304590:intron 30.0%
TACTAAACATAACATCTCCT+CGG - chr2_3:61928737-61928756 None:intergenic 30.0%
AGACTAATATGATAATAGCC+TGG + chr2_3:61928770-61928789 Msa0304590:intron 30.0%
GACTAATATGATAATAGCCT+GGG + chr2_3:61928771-61928790 Msa0304590:intron 30.0%
! ACTTACAAAGAAGTGCAAAT+GGG - chr2_3:61929039-61929058 None:intergenic 30.0%
! AACTTACAAAGAAGTGCAAA+TGG - chr2_3:61929040-61929059 None:intergenic 30.0%
TGGAACTCTATTCTTATTCT+TGG - chr2_3:61929075-61929094 None:intergenic 30.0%
TATCTGAGAGAACTTAGATT+CGG - chr2_3:61929128-61929147 None:intergenic 30.0%
AAACATTCAAACACAAACCA+AGG + chr2_3:61929220-61929239 Msa0304590:intron 30.0%
TTCTCTTTAATCAGATTGAG+GGG + chr2_3:61929264-61929283 Msa0304590:intron 30.0%
ATGAAACACTAGAAATGAAC+GGG - chr2_3:61929295-61929314 None:intergenic 30.0%
CATGAAACACTAGAAATGAA+CGG - chr2_3:61929296-61929315 None:intergenic 30.0%
TCAAAATCCATATCACATGT+AGG + chr2_3:61929538-61929557 Msa0304590:intron 30.0%
CAAAATCCATATCACATGTA+GGG + chr2_3:61929539-61929558 Msa0304590:intron 30.0%
AAAATCCATATCACATGTAG+GGG + chr2_3:61929540-61929559 Msa0304590:intron 30.0%
!!! AACAAGGTCGGATATTTTTT+CGG - chr2_3:61929618-61929637 None:intergenic 30.0%
AAAAAATATCCGACCTTGTT+TGG + chr2_3:61929618-61929637 Msa0304590:intron 30.0%
TATTAGTAAAGTAAGGAGTG+TGG - chr2_3:61929744-61929763 None:intergenic 30.0%
AGAAACCGAACCAAATTAAT+CGG - chr2_3:61930280-61930299 None:intergenic 30.0%
! TGTTAGAAAGTAAATGGACT+TGG + chr2_3:61930456-61930475 Msa0304590:intron 30.0%
!! TTTTGATTATCAGAACTGAG+TGG + chr2_3:61930542-61930561 Msa0304590:intron 30.0%
! TGTTATGATTGCAGTTTTCA+TGG + chr2_3:61930568-61930587 Msa0304590:intron 30.0%
AACTTTATCTGATTCTGAAC+TGG + chr2_3:61930792-61930811 Msa0304590:intron 30.0%
AATTCTATTTGCAAGGTTAG+TGG + chr2_3:61930841-61930860 Msa0304590:intron 30.0%
ATTCTATTTGCAAGGTTAGT+GGG + chr2_3:61930842-61930861 Msa0304590:intron 30.0%
GATAGAATACTACAGAACTT+CGG + chr2_3:61931620-61931639 Msa0304590:intron 30.0%
!! CAACCACTCTTGTTATTTAT+AGG + chr2_3:61931708-61931727 Msa0304590:intron 30.0%
TTGCCTATAAATAACAAGAG+TGG - chr2_3:61931714-61931733 None:intergenic 30.0%
AATATAATCAACACATCAGG+AGG - chr2_3:61931883-61931902 None:intergenic 30.0%
TAACAGAGAAGAATCAAACT+TGG - chr2_3:61931921-61931940 None:intergenic 30.0%
ATTAAGGCAATAGATCGAAA+AGG - chr2_3:61932074-61932093 None:intergenic 30.0%
AGAGAAGCTTGCAAAAATTA+AGG - chr2_3:61932090-61932109 None:intergenic 30.0%
!! GCTAGTTTATCATCTTTTCT+AGG - chr2_3:61932161-61932180 None:intergenic 30.0%
! TTAGCTTTCTGTTATTTGTG+TGG + chr2_3:61932456-61932475 Msa0304590:intron 30.0%
! TAGCTTTCTGTTATTTGTGT+GGG + chr2_3:61932457-61932476 Msa0304590:intron 30.0%
CAGAATCTAACTAAACTTAG+CGG + chr2_3:61932681-61932700 Msa0304590:intron 30.0%
TCGTTCATATTGTGATTTGA+TGG + chr2_3:61932762-61932781 Msa0304590:intron 30.0%
!! AGCATATTGTTATTTCACCA+AGG + chr2_3:61932824-61932843 Msa0304590:intron 30.0%
!! GCATATTGTTATTTCACCAA+GGG + chr2_3:61932825-61932844 Msa0304590:intron 30.0%
AAATTGCAATTTCAAACCCT+TGG - chr2_3:61932844-61932863 None:intergenic 30.0%
! AAGGGTTTGAAATTGCAATT+TGG + chr2_3:61932843-61932862 Msa0304590:intron 30.0%
TTCCATACTTATCAAGGAAA+CGG - chr2_3:61933022-61933041 None:intergenic 30.0%
TGTGTTTGGATGAAATTGTA+TGG + chr2_3:61933051-61933070 Msa0304590:CDS 30.0%
TTTGGATGAAATTGTATGGA+AGG + chr2_3:61933055-61933074 Msa0304590:CDS 30.0%
! AGTATCGTTTCAAGTGAATT+GGG - chr2_3:61933298-61933317 None:intergenic 30.0%
! CCAAGTTTTGCATGAAAATA+TGG - chr2_3:61933389-61933408 None:intergenic 30.0%
! CCATATTTTCATGCAAAACT+TGG + chr2_3:61933386-61933405 Msa0304590:intron 30.0%
! TTTCCCTGTATTTCTTTTGA+AGG + chr2_3:61933533-61933552 Msa0304590:intron 30.0%
! TTCCCTGTATTTCTTTTGAA+GGG + chr2_3:61933534-61933553 Msa0304590:intron 30.0%
ATCCCTTCAAAAGAAATACA+GGG - chr2_3:61933539-61933558 None:intergenic 30.0%
TATCCCTTCAAAAGAAATAC+AGG - chr2_3:61933540-61933559 None:intergenic 30.0%
!! ATTTCTTTTGAAGGGATATC+TGG + chr2_3:61933542-61933561 Msa0304590:intron 30.0%
TTTCTCATTCAAAACTCAGT+AGG - chr2_3:61933615-61933634 None:intergenic 30.0%
!! GTTTTGAATGAGAAATTCTG+AGG + chr2_3:61933620-61933639 Msa0304590:exon 30.0%
GAAAATAAACACATTGCACA+AGG - chr2_3:61933861-61933880 None:intergenic 30.0%
ATAGAGTGAGAGTGATAGAA+AGG + chr2_3:61925621-61925640 Msa0304590:intron 35.0%
AGGTTGTTCTTCATTTCCTT+TGG + chr2_3:61925641-61925660 Msa0304590:intron 35.0%
TCTTTCAATTCATCCTTGCA+AGG + chr2_3:61925694-61925713 Msa0304590:intron 35.0%
! AGGAGCTAATCATCTTTTGT+TGG + chr2_3:61925731-61925750 Msa0304590:intron 35.0%
! GGAGCTAATCATCTTTTGTT+GGG + chr2_3:61925732-61925751 Msa0304590:intron 35.0%
! TCATCTTTTGTTGGGATTAG+AGG + chr2_3:61925740-61925759 Msa0304590:intron 35.0%
GAGATTTCACGATATTGTGT+TGG + chr2_3:61926082-61926101 Msa0304590:intron 35.0%
TTACATGTGATAGTAGGACA+AGG + chr2_3:61926175-61926194 Msa0304590:intron 35.0%
TGATGTATGGAAAAGAGCTA+TGG + chr2_3:61926407-61926426 Msa0304590:intron 35.0%
CTTTAAGCACAAAGCAAGAT+TGG + chr2_3:61926551-61926570 Msa0304590:intron 35.0%
ACAGTTTCAATTCTAGCAAC+TGG - chr2_3:61926630-61926649 None:intergenic 35.0%
CTATTGCTTGTAAGAATGAG+TGG + chr2_3:61926664-61926683 Msa0304590:intron 35.0%
! AAACTGCACAAAGCACTATA+TGG + chr2_3:61926801-61926820 Msa0304590:intron 35.0%
! ACACTTTTCAAAGCCTATCT+GGG - chr2_3:61926877-61926896 None:intergenic 35.0%
! GAAAAGTGTGTAGTTGAGTT+TGG + chr2_3:61926888-61926907 Msa0304590:intron 35.0%
!! GTTGATGATTCACTTATCAC+TGG + chr2_3:61926963-61926982 Msa0304590:intron 35.0%
! GAGTTTGAAATGACTGATCT+GGG + chr2_3:61927032-61927051 Msa0304590:intron 35.0%
GGTGAACTTTCATTCTTCTT+AGG + chr2_3:61927053-61927072 Msa0304590:intron 35.0%
!! AGCTTTGAGTTTGTTTCTGA+TGG - chr2_3:61927185-61927204 None:intergenic 35.0%
ATCAGAAACAAACTCAAAGC+TGG + chr2_3:61927184-61927203 Msa0304590:intron 35.0%
AAGTGAATTCCACAATGTTC+AGG + chr2_3:61927228-61927247 Msa0304590:intron 35.0%
ACAATGTTCAGGCAAATTGT+GGG + chr2_3:61927239-61927258 Msa0304590:intron 35.0%
CAGCAATTTGTAGTTATGTG+GGG - chr2_3:61927350-61927369 None:intergenic 35.0%
TTCAGCAGTTATGATTAAGG+GGG + chr2_3:61927439-61927458 Msa0304590:intron 35.0%
!! TATGATTAAGGGGGAGTATT+AGG + chr2_3:61927448-61927467 Msa0304590:intron 35.0%
!! TTGGTTAGCTTGTTAACCAA+GGG + chr2_3:61927608-61927627 Msa0304590:intron 35.0%
AAATCATGCTAATGCAGAAG+AGG - chr2_3:61927860-61927879 None:intergenic 35.0%
! GTATCTCAGTAATTTGGAAC+AGG + chr2_3:61928240-61928259 Msa0304590:CDS 35.0%
! ACAGGTGATTTTTACAACTC+CGG + chr2_3:61928258-61928277 Msa0304590:CDS 35.0%
AAAACGGAATATGATCCTTG+CGG + chr2_3:61928309-61928328 Msa0304590:CDS 35.0%
! TTTCAGCGTTTTCTTTGATC+TGG + chr2_3:61928464-61928483 Msa0304590:intron 35.0%
!!! ATCTGGTTTTCTAATTTCCC+AGG - chr2_3:61928791-61928810 None:intergenic 35.0%
! TACCTAGGCTTTATCTGATA+GGG - chr2_3:61928881-61928900 None:intergenic 35.0%
! TTACCTAGGCTTTATCTGAT+AGG - chr2_3:61928882-61928901 None:intergenic 35.0%
! CTTACAAAGAAGTGCAAATG+GGG - chr2_3:61929038-61929057 None:intergenic 35.0%
GAATCTAAGTTCTCTCAGAT+AGG + chr2_3:61929127-61929146 Msa0304590:intron 35.0%
TTGAAAACTCGGCAACATTA+TGG + chr2_3:61929380-61929399 Msa0304590:intron 35.0%
! GAATGCATTTTCAGAAACAC+TGG - chr2_3:61929471-61929490 None:intergenic 35.0%
GAAAAGATAGAAGCTACCTA+GGG - chr2_3:61929495-61929514 None:intergenic 35.0%
AGAAAAGATAGAAGCTACCT+AGG - chr2_3:61929496-61929515 None:intergenic 35.0%
!! GTTTAGACTATCGGTTTCAT+TGG - chr2_3:61929586-61929605 None:intergenic 35.0%
ATGAAACCGATAGTCTAAAC+CGG + chr2_3:61929586-61929605 Msa0304590:intron 35.0%
!!! GATATTTTTTCGGTTTGGTC+CGG - chr2_3:61929608-61929627 None:intergenic 35.0%
!! TAGACTGGTTTCAATTGGTT+CGG - chr2_3:61929661-61929680 None:intergenic 35.0%
!! CAAACTAGACTGGTTTCAAT+TGG - chr2_3:61929666-61929685 None:intergenic 35.0%
CAATTGAAACCAGTCTAGTT+TGG + chr2_3:61929664-61929683 Msa0304590:intron 35.0%
!! TTATCATCGGATTGGTTCAT+CGG - chr2_3:61929721-61929740 None:intergenic 35.0%
TCTAACCATAAGTTTGTGTG+AGG - chr2_3:61929775-61929794 None:intergenic 35.0%
ACATTCACTTTCTCTCATCT+TGG + chr2_3:61929831-61929850 Msa0304590:intron 35.0%
CTCTCATCTTGGATTTAGTT+TGG + chr2_3:61929842-61929861 Msa0304590:intron 35.0%
! GTTGATGAATGATGCATGTA+TGG + chr2_3:61930000-61930019 Msa0304590:intron 35.0%
AATGATGCATGTATGGATCA+TGG + chr2_3:61930007-61930026 Msa0304590:intron 35.0%
!! CCAAATTAATCGGTTTGGTT+CGG - chr2_3:61930270-61930289 None:intergenic 35.0%
! CCAAACCGATTAATTTGGTT+CGG + chr2_3:61930272-61930291 Msa0304590:intron 35.0%
!! ACTTGGAACTTTTTCTTGTG+TGG + chr2_3:61930473-61930492 Msa0304590:intron 35.0%
ACTAGGAGCTGATAATCTTA+AGG + chr2_3:61930636-61930655 Msa0304590:CDS 35.0%
CTAGGAGCTGATAATCTTAA+GGG + chr2_3:61930637-61930656 Msa0304590:CDS 35.0%
AAGAGCAGTATACTTACTTG+TGG - chr2_3:61930693-61930712 None:intergenic 35.0%
! TTAAAGTGCTCACCTAGATA+AGG - chr2_3:61930774-61930793 None:intergenic 35.0%
TTGGAAAAGAGTTGTGGAAA+TGG + chr2_3:61931032-61931051 Msa0304590:intron 35.0%
AGATGTCAGTATATACGTTG+TGG + chr2_3:61931307-61931326 Msa0304590:CDS 35.0%
GATGTCAGTATATACGTTGT+GGG + chr2_3:61931308-61931327 Msa0304590:CDS 35.0%
ATGTCAGTATATACGTTGTG+GGG + chr2_3:61931309-61931328 Msa0304590:CDS 35.0%
AATAACAAGAGTGGTTGAGA+GGG - chr2_3:61931705-61931724 None:intergenic 35.0%
AAATAACAAGAGTGGTTGAG+AGG - chr2_3:61931706-61931725 None:intergenic 35.0%
GGTAACAAGATTAGGTAGTT+CGG - chr2_3:61931764-61931783 None:intergenic 35.0%
! ATTGTTGATGAAAGGACTGT+TGG - chr2_3:61931785-61931804 None:intergenic 35.0%
AGTCCTTTCATCAACAATGT+AGG + chr2_3:61931787-61931806 Msa0304590:intron 35.0%
! GAACCTACATTGTTGATGAA+AGG - chr2_3:61931793-61931812 None:intergenic 35.0%
!!! GGACACTAGTTTTATGGTAT+GGG - chr2_3:61932029-61932048 None:intergenic 35.0%
!!! TGGACACTAGTTTTATGGTA+TGG - chr2_3:61932030-61932049 None:intergenic 35.0%
TCATTTCTAAACGAGAATGG+TGG - chr2_3:61932131-61932150 None:intergenic 35.0%
GCTATTAAAGGATACTCTTG+CGG + chr2_3:61932179-61932198 Msa0304590:intron 35.0%
TGATAGAGATGTGAATCAAG+TGG + chr2_3:61932287-61932306 Msa0304590:intron 35.0%
ATTTAAGTGAGAAGGATCAG+AGG + chr2_3:61932422-61932441 Msa0304590:intron 35.0%
TTTAAGTGAGAAGGATCAGA+GGG + chr2_3:61932423-61932442 Msa0304590:intron 35.0%
! AGCTTTCTGTTATTTGTGTG+GGG + chr2_3:61932458-61932477 Msa0304590:intron 35.0%
TCACTAGTTGAGTGATTTCT+TGG + chr2_3:61932481-61932500 Msa0304590:intron 35.0%
CACTAGTTGAGTGATTTCTT+GGG + chr2_3:61932482-61932501 Msa0304590:intron 35.0%
ACTAGTTGAGTGATTTCTTG+GGG + chr2_3:61932483-61932502 Msa0304590:intron 35.0%
TGTGTGTGTGATTTGATGAA+TGG - chr2_3:61932656-61932675 None:intergenic 35.0%
AACAATATGCTTGAGTCACT+CGG - chr2_3:61932815-61932834 None:intergenic 35.0%
TTGACAGCTTACCAACATAT+AGG - chr2_3:61932874-61932893 None:intergenic 35.0%
!!! GTTTTGTTTTTCTCCAGTGT+CGG + chr2_3:61932935-61932954 Msa0304590:intron 35.0%
TACAATAACCTCAGCTGTAA+AGG + chr2_3:61932968-61932987 Msa0304590:CDS 35.0%
! TGGAAGAATTTGCTTGTGTT+TGG + chr2_3:61933037-61933056 Msa0304590:CDS 35.0%
! GAGTATCGTTTCAAGTGAAT+TGG - chr2_3:61933299-61933318 None:intergenic 35.0%
GAAGGGATATCTGGAAAATA+CGG + chr2_3:61933551-61933570 Msa0304590:intron 35.0%
AGCATCTTGTGACTTAGAAA+TGG + chr2_3:61933680-61933699 Msa0304590:three_prime_UTR 35.0%
! ATTGAGCTGTTCTCTAGAAG+TGG + chr2_3:61925424-61925443 Msa0304590:CDS 40.0%
! CTCTAGAAGTGGAATGATGT+TGG + chr2_3:61925435-61925454 Msa0304590:CDS 40.0%
! GAATGATGTTGGTGAAGCAT+TGG + chr2_3:61925446-61925465 Msa0304590:CDS 40.0%
! ATTTTCCCAAGCATACCATG+TGG - chr2_3:61925472-61925491 None:intergenic 40.0%
TGGCAAGAGTTATGCATTGA+AGG + chr2_3:61925504-61925523 Msa0304590:intron 40.0%
GGCAAGAGTTATGCATTGAA+GGG + chr2_3:61925505-61925524 Msa0304590:intron 40.0%
ACTTTGTGATGTCTCACCAA+AGG - chr2_3:61925660-61925679 None:intergenic 40.0%
GCAAGGATGAATTGAAAGAG+AGG - chr2_3:61925693-61925712 None:intergenic 40.0%
! TGATTAGCTCCTCATTGTCA+TGG - chr2_3:61925723-61925742 None:intergenic 40.0%
AAAGTGAAGTTGAACCCTGA+TGG + chr2_3:61926522-61926541 Msa0304590:intron 40.0%
GCTTAAAGACTTGTCCATCA+GGG - chr2_3:61926539-61926558 None:intergenic 40.0%
TGCTTAAAGACTTGTCCATC+AGG - chr2_3:61926540-61926559 None:intergenic 40.0%
TAAGCACAAAGCAAGATTGG+TGG + chr2_3:61926554-61926573 Msa0304590:intron 40.0%
! AAAGCAAGATTGGTGGCTAT+AGG + chr2_3:61926561-61926580 Msa0304590:intron 40.0%
CATACACTATCTCTTCCAGT+GGG - chr2_3:61926731-61926750 None:intergenic 40.0%
ACATACACTATCTCTTCCAG+TGG - chr2_3:61926732-61926751 None:intergenic 40.0%
!!! CACCAGGTTTTGAAATTGCT+GGG + chr2_3:61926760-61926779 Msa0304590:intron 40.0%
TTCCCAGCAATTTCAAAACC+TGG - chr2_3:61926765-61926784 None:intergenic 40.0%
ATCTTCTTGTTCCATGCTCT+AGG - chr2_3:61926840-61926859 None:intergenic 40.0%
!! GACCAAGTTTTAACCCAGAT+AGG + chr2_3:61926861-61926880 Msa0304590:intron 40.0%
AGCCTATCTGGGTTAAAACT+TGG - chr2_3:61926866-61926885 None:intergenic 40.0%
! CACACTTTTCAAAGCCTATC+TGG - chr2_3:61926878-61926897 None:intergenic 40.0%
GTTCAGAAACTTTCTGATGG+AGG + chr2_3:61926918-61926937 Msa0304590:intron 40.0%
! GGAGTTTGAAATGACTGATC+TGG + chr2_3:61927031-61927050 Msa0304590:intron 40.0%
CACAATTTGCCTGAACATTG+TGG - chr2_3:61927240-61927259 None:intergenic 40.0%
CACAATGTTCAGGCAAATTG+TGG + chr2_3:61927238-61927257 Msa0304590:intron 40.0%
! TGAGGTATCTGTGTAATAGC+AGG + chr2_3:61927267-61927286 Msa0304590:intron 40.0%
CTCACTAAGTAGCATATGTC+TGG - chr2_3:61927293-61927312 None:intergenic 40.0%
TTCTGATGTCTTCAGAAGCT+GGG + chr2_3:61927571-61927590 Msa0304590:intron 40.0%
CTTGGTTAACAAGCTAACCA+AGG - chr2_3:61927609-61927628 None:intergenic 40.0%
!! CTTGGTTAGCTTGTTAACCA+AGG + chr2_3:61927607-61927626 Msa0304590:intron 40.0%
CTCTAACAAACTAACTCCCT+TGG - chr2_3:61927627-61927646 None:intergenic 40.0%
!! CAAGGGAGTTAGTTTGTTAG+AGG + chr2_3:61927625-61927644 Msa0304590:intron 40.0%
! TGTTTGTTGCGTCGATATGT+AGG + chr2_3:61928012-61928031 Msa0304590:intron 40.0%
! ACCTAGGCTTTATCTGATAG+GGG - chr2_3:61928880-61928899 None:intergenic 40.0%
! GCTTGTTAGTCAAGCTTTGA+AGG + chr2_3:61928956-61928975 Msa0304590:intron 40.0%
AGTTCGCAACTTAGCTTAAG+TGG - chr2_3:61929095-61929114 None:intergenic 40.0%
TCTGAAAATGCATTCTCCCT+AGG + chr2_3:61929476-61929495 Msa0304590:intron 40.0%
TTACACCCCTACATGTGATA+TGG - chr2_3:61929548-61929567 None:intergenic 40.0%
TTTGGTCCGGTTTAGACTAT+CGG - chr2_3:61929595-61929614 None:intergenic 40.0%
!!! GGTCGGATATTTTTTCGGTT+TGG - chr2_3:61929613-61929632 None:intergenic 40.0%
! ATATCCGACCTTGTTTGGTT+CGG + chr2_3:61929623-61929642 Msa0304590:intron 40.0%
GTTTCAAACCGAACCAAACA+AGG - chr2_3:61929634-61929653 None:intergenic 40.0%
!! TGGTTTCAATTGGTTCGGAT+CGG - chr2_3:61929656-61929675 None:intergenic 40.0%
! AACCAGTCTAGTTTGGTTCA+TGG + chr2_3:61929671-61929690 Msa0304590:intron 40.0%
AACCATGAACCAAACTAGAC+TGG - chr2_3:61929676-61929695 None:intergenic 40.0%
! GTAAGGAGTGTGGTTATCAT+CGG - chr2_3:61929734-61929753 None:intergenic 40.0%
TCCTACCTCACACAAACTTA+TGG + chr2_3:61929767-61929786 Msa0304590:intron 40.0%
ACCATAAGTTTGTGTGAGGT+AGG - chr2_3:61929771-61929790 None:intergenic 40.0%
!! TTTGGATTGGTTCGGTTGAT+CGG - chr2_3:61930247-61930266 None:intergenic 40.0%
!! TTAATCGGTTTGGTTCGGTT+TGG - chr2_3:61930265-61930284 None:intergenic 40.0%
CCGAACCAAACCGATTAATT+TGG + chr2_3:61930267-61930286 Msa0304590:intron 40.0%
CCGAACCAAATTAATCGGTT+TGG - chr2_3:61930275-61930294 None:intergenic 40.0%
!!! CATCGGTTCGGACATTTTTT+TGG + chr2_3:61930348-61930367 Msa0304590:intron 40.0%
TGTAACGGTTCAGTTTGGAT+TGG - chr2_3:61930382-61930401 None:intergenic 40.0%
TTACTTTGTATGTGAGTGGC+TGG - chr2_3:61930424-61930443 None:intergenic 40.0%
CCAAGTATCTTCTACAATGC+AGG - chr2_3:61930514-61930533 None:intergenic 40.0%
CCTGCATTGTAGAAGATACT+TGG + chr2_3:61930511-61930530 Msa0304590:intron 40.0%
CGTTCTTTCTTGGTCAAACT+AGG + chr2_3:61930619-61930638 Msa0304590:CDS 40.0%
CAGTAACAGATACAAGATCG+TGG + chr2_3:61931094-61931113 Msa0304590:intron 40.0%
AAGAGAGAATTGGGGACTTT+GGG - chr2_3:61931664-61931683 None:intergenic 40.0%
TAAGAGAGAATTGGGGACTT+TGG - chr2_3:61931665-61931684 None:intergenic 40.0%
!! GGACTGTTGGTAACAAGATT+AGG - chr2_3:61931772-61931791 None:intergenic 40.0%
AAGAATCAGAACTGCAGACA+AGG - chr2_3:61931832-61931851 None:intergenic 40.0%
! TTGTCTGCAGTTCTGATTCT+TGG + chr2_3:61931831-61931850 Msa0304590:intron 40.0%
TTCTCCTCATGCTGTCAATT+GGG + chr2_3:61931969-61931988 Msa0304590:intron 40.0%
!!! GTGGATGGACACTAGTTTTA+TGG - chr2_3:61932035-61932054 None:intergenic 40.0%
!! AAACGAGAATGGTGGATTGA+GGG - chr2_3:61932123-61932142 None:intergenic 40.0%
!! TAAACGAGAATGGTGGATTG+AGG - chr2_3:61932124-61932143 None:intergenic 40.0%
! CTCTTGCGGTGTTGAAAATA+TGG + chr2_3:61932193-61932212 Msa0304590:intron 40.0%
AGTGAGAAAAGCTAGCTATC+AGG + chr2_3:61932236-61932255 Msa0304590:intron 40.0%
TAGCTATCAGGTGAACTAGT+AGG + chr2_3:61932248-61932267 Msa0304590:intron 40.0%
AGCTATCAGGTGAACTAGTA+GGG + chr2_3:61932249-61932268 Msa0304590:intron 40.0%
TAGAGATGTGAATCAAGTGG+TGG + chr2_3:61932290-61932309 Msa0304590:intron 40.0%
ATGTAGACCCTCCAAATCTT+TGG - chr2_3:61932336-61932355 None:intergenic 40.0%
AGGGTCTACATGAGAAAGAA+GGG + chr2_3:61932345-61932364 Msa0304590:intron 40.0%
! AATGATGACGTGGCTACTAA+AGG + chr2_3:61932384-61932403 Msa0304590:intron 40.0%
! ATGATGACGTGGCTACTAAA+GGG + chr2_3:61932385-61932404 Msa0304590:intron 40.0%
ACATACATCCTTTACAGCTG+AGG - chr2_3:61932979-61932998 None:intergenic 40.0%
TCAGCTGTAAAGGATGTATG+TGG + chr2_3:61932978-61932997 Msa0304590:CDS 40.0%
CAGCTGTAAAGGATGTATGT+GGG + chr2_3:61932979-61932998 Msa0304590:CDS 40.0%
AAACTCCTCTTTCGCAACAA+TGG - chr2_3:61933491-61933510 None:intergenic 40.0%
CTCATTCAAAACTCAGTAGG+AGG - chr2_3:61933612-61933631 None:intergenic 40.0%
ATCATACAAAGAGGTTTGCC+TGG - chr2_3:61933719-61933738 None:intergenic 40.0%
!! TTTGTTCTCTAGAATGGTGC+AGG + chr2_3:61933741-61933760 Msa0304590:three_prime_UTR 40.0%
AGACAAGAAGCTGTTGCACA+TGG + chr2_3:61925391-61925410 Msa0304590:CDS 45.0%
ATTGGCCACATGGTATGCTT+GGG + chr2_3:61925464-61925483 Msa0304590:intron 45.0%
ATTGTCATGGAAGCCTTGCA+AGG - chr2_3:61925710-61925729 None:intergenic 45.0%
TGGACACAAACAATGTTGCG+AGG + chr2_3:61926102-61926121 Msa0304590:intron 45.0%
TGATATCACACTAGTCCCTG+AGG + chr2_3:61926333-61926352 Msa0304590:intron 45.0%
AGCATTTCTAAATGGCCCAC+TGG + chr2_3:61926713-61926732 Msa0304590:intron 45.0%
GTGTATGTATCACAACCACC+AGG + chr2_3:61926744-61926763 Msa0304590:intron 45.0%
CCAGCAATTTCAAAACCTGG+TGG - chr2_3:61926762-61926781 None:intergenic 45.0%
!!! CCACCAGGTTTTGAAATTGC+TGG + chr2_3:61926759-61926778 Msa0304590:intron 45.0%
TAAAACAGGCTCCTAGAGCA+TGG + chr2_3:61926826-61926845 Msa0304590:intron 45.0%
GCTGGATGAATGCATTGAAG+AGG + chr2_3:61927202-61927221 Msa0304590:intron 45.0%
CTTCTGATGTCTTCAGAAGC+TGG + chr2_3:61927570-61927589 Msa0304590:intron 45.0%
CTGGGTCTAGTAACAAACCT+TGG + chr2_3:61927589-61927608 Msa0304590:intron 45.0%
! TTTTACAACTCCGGTGAGCA+AGG + chr2_3:61928267-61928286 Msa0304590:CDS 45.0%
TCAAACTCAACCTTGCTCAC+CGG - chr2_3:61928280-61928299 None:intergenic 45.0%
TTCGATGAGGATATTGCCCT+CGG - chr2_3:61928350-61928369 None:intergenic 45.0%
AGGGCAATATCCTCATCGAA+CGG + chr2_3:61928350-61928369 Msa0304590:CDS 45.0%
AAGTCTAGTGCGCTTTACCT+AGG - chr2_3:61928896-61928915 None:intergenic 45.0%
TAGGTAAAGCGCACTAGACT+TGG + chr2_3:61928895-61928914 Msa0304590:intron 45.0%
GCAATGTAAGCTGCAAGCTT+AGG + chr2_3:61928986-61929005 Msa0304590:intron 45.0%
! ATCACATGTAGGGGTGTAAG+CGG + chr2_3:61929549-61929568 Msa0304590:intron 45.0%
CAAACCGAACCAAACAAGGT+CGG - chr2_3:61929630-61929649 None:intergenic 45.0%
!! GGATTGGTTCATCGGTTTCA+CGG - chr2_3:61929713-61929732 None:intergenic 45.0%
GAGTGTGGTTATCATCGGAT+TGG - chr2_3:61929729-61929748 None:intergenic 45.0%
!! TGGTTCGGTTTGGATTGGTT+CGG - chr2_3:61930255-61930274 None:intergenic 45.0%
!! TTCATCGGTTCGGTTTGGTT+CGG - chr2_3:61930323-61930342 None:intergenic 45.0%
!! AAACCTTCATCGGTTCGGTT+TGG - chr2_3:61930328-61930347 None:intergenic 45.0%
! CGATGAAACCTTCATCGGTT+CGG - chr2_3:61930333-61930352 None:intergenic 45.0%
CGAACCGATGAAGGTTTCAT+CGG + chr2_3:61930331-61930350 Msa0304590:intron 45.0%
CGAACCGATGAAACCTTCAT+CGG - chr2_3:61930338-61930357 None:intergenic 45.0%
! CGATGAAGGTTTCATCGGTT+CGG + chr2_3:61930336-61930355 Msa0304590:intron 45.0%
! ACATGGGATTAGGGGTGTAA+CGG - chr2_3:61930397-61930416 None:intergenic 45.0%
CTGGAATGACATGGGATTAG+GGG - chr2_3:61930405-61930424 None:intergenic 45.0%
GCTGGAATGACATGGGATTA+GGG - chr2_3:61930406-61930425 None:intergenic 45.0%
! TTTTCATGGAGTTCCTGCAG+AGG + chr2_3:61930582-61930601 Msa0304590:CDS 45.0%
CTTACTTGTGGCAAGCAACT+AGG - chr2_3:61930681-61930700 None:intergenic 45.0%
ACGTACACATGACTTGAGAG+AGG - chr2_3:61930717-61930736 None:intergenic 45.0%
TCTGATTCTGAACTGGTCCA+AGG + chr2_3:61930799-61930818 Msa0304590:intron 45.0%
CAGTATATACGTTGTGGGGA+AGG + chr2_3:61931313-61931332 Msa0304590:CDS 45.0%
CTTCTCCTCATGCTGTCAAT+TGG + chr2_3:61931968-61931987 Msa0304590:intron 45.0%
GCAGGATGGACAAGATTCTA+GGG - chr2_3:61931997-61932016 None:intergenic 45.0%
TGCAGGATGGACAAGATTCT+AGG - chr2_3:61931998-61932017 None:intergenic 45.0%
ATGGGAAATACTGTGCAGGA+TGG - chr2_3:61932011-61932030 None:intergenic 45.0%
TGGTATGGGAAATACTGTGC+AGG - chr2_3:61932015-61932034 None:intergenic 45.0%
AACAGAGCAACAGTTGTGGA+TGG - chr2_3:61932050-61932069 None:intergenic 45.0%
AGGAAACAGAGCAACAGTTG+TGG - chr2_3:61932054-61932073 None:intergenic 45.0%
!! AACGAGAATGGTGGATTGAG+GGG - chr2_3:61932122-61932141 None:intergenic 45.0%
GCTATCAGGTGAACTAGTAG+GGG + chr2_3:61932250-61932269 Msa0304590:intron 45.0%
!! AAGTGGTGGACATTGACAGT+GGG + chr2_3:61932304-61932323 Msa0304590:intron 45.0%
! ACCCTCCAAATCTTTGGCTT+GGG - chr2_3:61932330-61932349 None:intergenic 45.0%
GAGGGTCTACATGAGAAAGA+AGG + chr2_3:61932344-61932363 Msa0304590:intron 45.0%
GTCTACATGAGAAAGAAGGG+AGG + chr2_3:61932348-61932367 Msa0304590:intron 45.0%
ATGAGAAAGAAGGGAGGACA+AGG + chr2_3:61932354-61932373 Msa0304590:intron 45.0%
! AGGCAAAAGGAATGATGACG+TGG + chr2_3:61932374-61932393 Msa0304590:intron 45.0%
!! TTGTTTTTCTCCAGTGTCGG+AGG + chr2_3:61932938-61932957 Msa0304590:intron 45.0%
GTAAAGATAACCTCCGACAC+TGG - chr2_3:61932951-61932970 None:intergenic 45.0%
CGCCGTTTCCTTGATAAGTA+TGG + chr2_3:61933017-61933036 Msa0304590:CDS 45.0%
CTTTCGCAACAATGGAACAG+AGG - chr2_3:61933483-61933502 None:intergenic 45.0%
CTGTTCCATTGTTGCGAAAG+AGG + chr2_3:61933483-61933502 Msa0304590:intron 45.0%
AATCTGCAGTTTGAGTCGTG+TGG + chr2_3:61933655-61933674 Msa0304590:three_prime_UTR 45.0%
AATGGCATGTAACCAAAGCC+AGG + chr2_3:61933698-61933717 Msa0304590:three_prime_UTR 45.0%
!!! TAATTTTATTCTTTAAATTT+TGG - chr2_3:61927884-61927903 None:intergenic 5.0%
!! TTGGTGAAGCATTGGCCACA+TGG + chr2_3:61925454-61925473 Msa0304590:CDS 50.0%
CATTGGCCACATGGTATGCT+TGG + chr2_3:61925463-61925482 Msa0304590:intron 50.0%
GCAAGGCTTCCATGACAATG+AGG + chr2_3:61925711-61925730 Msa0304590:intron 50.0%
GGCAAATTGTGGGATCTCTG+AGG + chr2_3:61927249-61927268 Msa0304590:intron 50.0%
AGAAGCTCGCTGATGTTCAG+AGG - chr2_3:61927541-61927560 None:intergenic 50.0%
AGTGTACTCACCGTTCGATG+AGG - chr2_3:61928363-61928382 None:intergenic 50.0%
TCTGATAGGGGCTACCATTG+CGG - chr2_3:61928868-61928887 None:intergenic 50.0%
GCCCCTATCAGATAAAGCCT+AGG + chr2_3:61928876-61928895 Msa0304590:intron 50.0%
TGGAGATTCGTGCATCCTCT+CGG + chr2_3:61928915-61928934 Msa0304590:intron 50.0%
CTGCAAGCTTAGGCTTTCTC+CGG + chr2_3:61928996-61929015 Msa0304590:intron 50.0%
GGGAGTCTATATCAGCTGAC+CGG - chr2_3:61929018-61929037 None:intergenic 50.0%
! ATGTAGGGGTGTAAGCGGTT+CGG + chr2_3:61929554-61929573 Msa0304590:intron 50.0%
!! CGGTTTGGTTCGGTTTGGAT+TGG - chr2_3:61930260-61930279 None:intergenic 50.0%
GAACCAAACCGAACCGATGA+AGG + chr2_3:61930322-61930341 Msa0304590:intron 50.0%
! AGGGGTGTAACGGTTCAGTT+TGG - chr2_3:61930387-61930406 None:intergenic 50.0%
GGCTGGAATGACATGGGATT+AGG - chr2_3:61930407-61930426 None:intergenic 50.0%
GTGAGTGGCTGGAATGACAT+GGG - chr2_3:61930413-61930432 None:intergenic 50.0%
TGTGAGTGGCTGGAATGACA+TGG - chr2_3:61930414-61930433 None:intergenic 50.0%
CCAAGAAAGAACGCCAGTGT+AGG - chr2_3:61930612-61930631 None:intergenic 50.0%
CCTACACTGGCGTTCTTTCT+TGG + chr2_3:61930609-61930628 Msa0304590:CDS 50.0%
ATTGTTGTGCCTAGCACCTG+TGG + chr2_3:61931940-61931959 Msa0304590:intron 50.0%
ATGAGGAGAAGCAAAGCCAC+AGG - chr2_3:61931959-61931978 None:intergenic 50.0%
GGAACCCAATTGACAGCATG+AGG - chr2_3:61931976-61931995 None:intergenic 50.0%
!! CAAGTGGTGGACATTGACAG+TGG + chr2_3:61932303-61932322 Msa0304590:intron 50.0%
GCCCAAGCCAAAGATTTGGA+GGG + chr2_3:61932326-61932345 Msa0304590:intron 50.0%
GACCCTCCAAATCTTTGGCT+TGG - chr2_3:61932331-61932350 None:intergenic 50.0%
AGAAGGGAGGACAAGGCAAA+AGG + chr2_3:61932361-61932380 Msa0304590:intron 50.0%
TGCTTGAGTCACTCGGCAAT+TGG - chr2_3:61932808-61932827 None:intergenic 50.0%
TGGAAGGTGAGAAGACATGC+CGG + chr2_3:61933071-61933090 Msa0304590:intron 50.0%
CAAAGAGGTTTGCCTGGCTT+TGG - chr2_3:61933713-61933732 None:intergenic 50.0%
TGGCAAGTCAACTAGCTCCC+AGG - chr2_3:61926466-61926485 None:intergenic 55.0%
!! CGTTGGCAAAAAGCACCGCA+AGG - chr2_3:61928327-61928346 None:intergenic 55.0%
!! GTGCTTTTTGCCAACGCCGA+GGG + chr2_3:61928331-61928350 Msa0304590:CDS 55.0%
ATCTCACTCTCGACCCGCAA+TGG + chr2_3:61928851-61928870 Msa0304590:intron 55.0%
CTGATAGGGGCTACCATTGC+GGG - chr2_3:61928867-61928886 None:intergenic 55.0%
ATTCGTGCATCCTCTCGGAG+AGG + chr2_3:61928920-61928939 Msa0304590:intron 55.0%
TTCGTGCATCCTCTCGGAGA+GGG + chr2_3:61928921-61928940 Msa0304590:intron 55.0%
AGAGTTTGTCCCTCTCCGAG+AGG - chr2_3:61928933-61928952 None:intergenic 55.0%
!! GTCAAGCTTTGAAGGTGCCG+CGG + chr2_3:61928964-61928983 Msa0304590:intron 55.0%
GCTTGCAGCTTACATTGCCG+CGG - chr2_3:61928984-61929003 None:intergenic 55.0%
GAAGCAAAGCCACAGGTGCT+AGG - chr2_3:61931952-61931971 None:intergenic 55.0%
GTGGGCCCAAGCCAAAGATT+TGG + chr2_3:61932322-61932341 Msa0304590:intron 55.0%
GGCCCAAGCCAAAGATTTGG+AGG + chr2_3:61932325-61932344 Msa0304590:intron 55.0%
AAGGAAACGGCGCTCAGTTG+GGG - chr2_3:61933009-61933028 None:intergenic 55.0%
CAAGGAAACGGCGCTCAGTT+GGG - chr2_3:61933010-61933029 None:intergenic 55.0%
TCAAGGAAACGGCGCTCAGT+TGG - chr2_3:61933011-61933030 None:intergenic 55.0%
!! TCTCTAGAATGGTGCAGGCG+AGG + chr2_3:61933746-61933765 Msa0304590:three_prime_UTR 55.0%
! GTGCAGGCGAGGATTTTGCT+CGG + chr2_3:61933757-61933776 Msa0304590:three_prime_UTR 55.0%
!! GGTGCTTTTTGCCAACGCCG+AGG + chr2_3:61928330-61928349 Msa0304590:CDS 60.0%
GAGGATATTGCCCTCGGCGT+TGG - chr2_3:61928344-61928363 None:intergenic 60.0%
!! TTGGGGAGCACTGCGTGCTT+GGG + chr2_3:61932500-61932519 Msa0304590:intron 60.0%
AGGAAACGGCGCTCAGTTGG+GGG - chr2_3:61933008-61933027 None:intergenic 60.0%
CAGTGTAGGCGCTCCTCTGC+AGG - chr2_3:61930598-61930617 None:intergenic 65.0%
!! CTGCAGAGGAGCGCCTACAC+TGG + chr2_3:61930596-61930615 Msa0304590:CDS 65.0%
!! CTTGGGGAGCACTGCGTGCT+TGG + chr2_3:61932499-61932518 Msa0304590:intron 65.0%
!! TGGGGAGCACTGCGTGCTTG+GGG + chr2_3:61932501-61932520 Msa0304590:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 61925376 61933995 61925376 ID=Msa0304590;Name=Msa0304590
chr2_3 mRNA 61925376 61933995 61925376 ID=Msa0304590-mRNA-1;Parent=Msa0304590;Name=Msa0304590-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.83|0.71|0.85|0.83|0.71|7|333|207
chr2_3 exon 61925376 61925475 61925376 ID=Msa0304590-mRNA-1:exon:20617;Parent=Msa0304590-mRNA-1
chr2_3 exon 61928239 61928371 61928239 ID=Msa0304590-mRNA-1:exon:20618;Parent=Msa0304590-mRNA-1
chr2_3 exon 61930582 61930695 61930582 ID=Msa0304590-mRNA-1:exon:20619;Parent=Msa0304590-mRNA-1
chr2_3 exon 61931277 61931356 61931277 ID=Msa0304590-mRNA-1:exon:20620;Parent=Msa0304590-mRNA-1
chr2_3 exon 61932952 61933076 61932952 ID=Msa0304590-mRNA-1:exon:20621;Parent=Msa0304590-mRNA-1
chr2_3 exon 61933555 61933905 61933555 ID=Msa0304590-mRNA-1:exon:20622;Parent=Msa0304590-mRNA-1
chr2_3 exon 61933942 61933995 61933942 ID=Msa0304590-mRNA-1:exon:20623;Parent=Msa0304590-mRNA-1
chr2_3 CDS 61925376 61925475 61925376 ID=Msa0304590-mRNA-1:cds;Parent=Msa0304590-mRNA-1
chr2_3 CDS 61928239 61928371 61928239 ID=Msa0304590-mRNA-1:cds;Parent=Msa0304590-mRNA-1
chr2_3 CDS 61930582 61930695 61930582 ID=Msa0304590-mRNA-1:cds;Parent=Msa0304590-mRNA-1
chr2_3 CDS 61931277 61931356 61931277 ID=Msa0304590-mRNA-1:cds;Parent=Msa0304590-mRNA-1
chr2_3 CDS 61932952 61933076 61932952 ID=Msa0304590-mRNA-1:cds;Parent=Msa0304590-mRNA-1
chr2_3 CDS 61933555 61933626 61933555 ID=Msa0304590-mRNA-1:cds;Parent=Msa0304590-mRNA-1
chr2_3 three_prime_UTR 61933627 61933905 61933627 ID=Msa0304590-mRNA-1:three_prime_utr;Parent=Msa0304590-mRNA-1
chr2_3 three_prime_UTR 61933942 61933995 61933942 ID=Msa0304590-mRNA-1:three_prime_utr;Parent=Msa0304590-mRNA-1
Gene Sequence

>Msa0304590

ATGGCAGTAGAAGACAGACAAGAAGCTGTTGCACATGGAGTAGAGAATATTGAGCTGTTCTCTAGAAGTGGAATGATGTTGGTGAAGCATTGGCCACATGGGTATCTCAGTAATTTGGAACAGGTGATTTTTACAACTCCGGTGAGCAAGGTTGAGTTTGATATCAGAGAAAAACGGAATATGATCCTTGCGGTGCTTTTTGCCAACGCCGAGGGCAATATCCTCATCGAACGTTTTCATGGAGTTCCTGCAGAGGAGCGCCTACACTGGCGTTCTTTCTTGGTCAAACTAGGAGCTGATAATCTTAAGGGTGTAAAAAATGAAGAACTCCTAGTTGCTTGCCACAAGTCAGTCTATATTGTATACACAGTACTTGGAGATGTCAGTATATACGTTGTGGGGAAGGACGCGTACGATGAACTTGCTTTGTCGGAGGTTATCTTTACAATAACCTCAGCTGTAAAGGATGTATGTGGGAAGCCCCCAACTGAGCGCCGTTTCCTTGATAAGTATGGAAGAATTTGCTTGTGTTTGGATGAAATTGTATGGAAGGGATATCTGGAAAATACGGAAAAAGATAGAATCAAGAGATTGATAAGGTTGAAGCCTCCTACTGAGTTTTGA

Protein sequence

>Msa0304590

MAVEDRQEAVAHGVENIELFSRSGMMLVKHWPHGYLSNLEQVIFTTPVSKVEFDIREKRNMILAVLFANAEGNILIERFHGVPAEERLHWRSFLVKLGADNLKGVKNEELLVACHKSVYIVYTVLGDVSIYVVGKDAYDELALSEVIFTITSAVKDVCGKPPTERRFLDKYGRICLCLDEIVWKGYLENTEKDRIKRLIRLKPPTEF*