AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0588260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0588260 MtrunA17_Chr4g0004541 100.000 64 0 0 1 64 1 64 3.55e-37 118
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0588260 AT1G15270.1 89.062 64 7 0 1 64 1 64 1.12e-33 109
Msa0588260 AT3G16040.1 84.375 64 10 0 1 64 1 64 3.79e-29 98.2

Find 39 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCTTGGTCGACATGGTTT+TGG 0.243730 4_2:+10462325 None:intergenic
TCTATTATGTTCTCACCTTA+TGG 0.251637 4_2:-10460404 Msa0588260:three_prime_UTR
GCCTCACAGAAGGGATCTTT+TGG 0.287259 4_2:-10460729 Msa0588260:CDS
AGCTTCTTTGTGTCTCCCTT+TGG 0.293265 4_2:-10460514 Msa0588260:three_prime_UTR
TTGGGTGAAGAGTTAGGGTT+TGG 0.304226 4_2:+10462344 None:intergenic
GCTTCTTTGTGTCTCCCTTT+GGG 0.319835 4_2:-10460513 Msa0588260:three_prime_UTR
GGCTAACATCCAGAAGAAAA+AGG 0.357013 4_2:-10460879 Msa0588260:CDS
TCTGTTTAGTGTTGTGGCTT+TGG 0.357724 4_2:-10460481 Msa0588260:three_prime_UTR
TACTAACATCAGCAATTAAA+AGG 0.358102 4_2:+10460587 None:intergenic
TACATCATCACGATAAGCTT+TGG 0.387023 4_2:+10460559 None:intergenic
GAAAAGTGGAAAGAAATAGA+AGG 0.393132 4_2:-10460691 Msa0588260:exon
AATACATCTGTTTAGTGTTG+TGG 0.400431 4_2:-10460487 Msa0588260:three_prime_UTR
TAATCCTTCTTATCAGACTT+TGG 0.404695 4_2:+10462080 None:intergenic
GCTTTGGCATATACTTCTCT+TGG 0.414931 4_2:-10460465 Msa0588260:three_prime_UTR
AGATTGAAGGTTACCTTGCT+TGG 0.431112 4_2:+10462310 None:intergenic
TGGGTGAAGAGTTAGGGTTT+GGG 0.436696 4_2:+10462345 None:intergenic
CAAGGTAAGTTGTTACCATA+AGG 0.478549 4_2:+10460389 None:intergenic
AAAATAATTTAGTGAGGGTA+AGG 0.485824 4_2:-10462416 Msa0588260:five_prime_UTR
TCAGACTTTGGCTTCTTCAA+AGG 0.486773 4_2:+10462092 None:intergenic
TATAGGTTGCTTATAGAAAA+CGG 0.491126 4_2:-10462485 None:intergenic
GAAGCCAAAGTCTGATAAGA+AGG 0.504619 4_2:-10462084 Msa0588260:CDS
ATGGATTGAACAGGCGCTAA+AGG 0.513359 4_2:-10460766 Msa0588260:intron
GTTACCTTGCTTGGTCGACA+TGG 0.525919 4_2:+10462319 None:intergenic
ACAGATGTATTAAGCCCAAA+GGG 0.527031 4_2:+10460499 None:intergenic
GCTAAAGGAGCTGAAGGCTA+AGG 0.540771 4_2:-10460751 Msa0588260:CDS
GGATCTGGACTCAAGAAAAG+TGG 0.544869 4_2:-10460705 Msa0588260:CDS
CACAATAAGAGATGTTCTCA+TGG 0.546443 4_2:+10460613 None:intergenic
GAAGGCTAAGGCCTCACAGA+AGG 0.551780 4_2:-10460739 Msa0588260:CDS
AAAAGTGGAAAGAAATAGAA+GGG 0.572493 4_2:-10460690 Msa0588260:exon
AACAGATGTATTAAGCCCAA+AGG 0.577766 4_2:+10460498 None:intergenic
CAAGAATCTCATCTCTCACA+AGG 0.581904 4_2:+10460371 None:intergenic
AAAACCATGTCGACCAAGCA+AGG 0.588270 4_2:-10462323 Msa0588260:intron
TACCCGAAAATAATTTAGTG+AGG 0.592271 4_2:-10462422 Msa0588260:five_prime_UTR
ACCCGAAAATAATTTAGTGA+GGG 0.609648 4_2:-10462421 Msa0588260:five_prime_UTR
AAGGCTAAGGCCTCACAGAA+GGG 0.624637 4_2:-10460738 Msa0588260:CDS
ACAGGCGCTAAAGGAGCTGA+AGG 0.640092 4_2:-10460757 Msa0588260:intron
TCCAAAAGATCCCTTCTGTG+AGG 0.701774 4_2:+10460728 None:intergenic
TGATAAGAAGGATTACGATG+AGG 0.705327 4_2:-10462072 Msa0588260:intron
AGGTTGCTTATAGAAAACGG+TGG 0.768300 4_2:-10462482 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTTGATTGATTTTTT+TGG - chr4_2:10460640-10460659 Msa0588260:three_prime_UTR 10.0%
!!! AGGTATTTTAATTTTTTTTT+TGG - chr4_2:10460738-10460757 Msa0588260:CDS 10.0%
!! AAAAAATTGATTAATTCAAA+AGG + chr4_2:10460902-10460921 None:intergenic 10.0%
!!! AATTTTTTGATTGATTTTTT+TGG - chr4_2:10460640-10460659 Msa0588260:three_prime_UTR 10.0%
!!! AGGTATTTTAATTTTTTTTT+TGG - chr4_2:10460738-10460757 Msa0588260:CDS 10.0%
!! AAAAAATTGATTAATTCAAA+AGG + chr4_2:10460902-10460921 None:intergenic 10.0%
!!! TTTTTTTTTGGATATTATGT+TGG - chr4_2:10460750-10460769 Msa0588260:CDS 15.0%
!! ATAGTAATTAAAAACAAAAG+AGG - chr4_2:10460982-10461001 Msa0588260:intron 15.0%
!!! TTTTTTTTTGGATATTATGT+TGG - chr4_2:10460750-10460769 Msa0588260:CDS 15.0%
!! ATAGTAATTAAAAACAAAAG+AGG - chr4_2:10460982-10461001 Msa0588260:intron 15.0%
!!! AGAATTGAAATTTTCTAGTT+TGG - chr4_2:10460817-10460836 Msa0588260:intron 20.0%
!! GAATTCTATTAATTCAAACA+TGG + chr4_2:10461171-10461190 None:intergenic 20.0%
!! CTAATCAAAGCTATTAATTT+GGG + chr4_2:10461229-10461248 None:intergenic 20.0%
!! TCTAATCAAAGCTATTAATT+TGG + chr4_2:10461230-10461249 None:intergenic 20.0%
!!! TAATTGTATCTGTATTTTGT+AGG - chr4_2:10461881-10461900 Msa0588260:intron 20.0%
!!! AGAATTGAAATTTTCTAGTT+TGG - chr4_2:10460817-10460836 Msa0588260:intron 20.0%
!! GAATTCTATTAATTCAAACA+TGG + chr4_2:10461171-10461190 None:intergenic 20.0%
!! CTAATCAAAGCTATTAATTT+GGG + chr4_2:10461229-10461248 None:intergenic 20.0%
!! TCTAATCAAAGCTATTAATT+TGG + chr4_2:10461230-10461249 None:intergenic 20.0%
!!! TAATTGTATCTGTATTTTGT+AGG - chr4_2:10461881-10461900 Msa0588260:intron 20.0%
!! TACCCTCACTAAATTATTTT+CGG + chr4_2:10460374-10460393 None:intergenic 25.0%
! AAAATAATTTAGTGAGGGTA+AGG - chr4_2:10460374-10460393 Msa0588260:three_prime_UTR 25.0%
! ACATGAATCAATAGAGTTAT+AGG + chr4_2:10460506-10460525 None:intergenic 25.0%
!! ACGAACAGATCTATATTTTA+GGG + chr4_2:10460605-10460624 None:intergenic 25.0%
!!! GTTTGCTTTTTGTGATTTTT+AGG - chr4_2:10460662-10460681 Msa0588260:three_prime_UTR 25.0%
! ACTGTATATTTGAATTGTGT+TGG - chr4_2:10460790-10460809 Msa0588260:intron 25.0%
!!! TTATTGGGTGTTTTTGTTAT+AGG - chr4_2:10460866-10460885 Msa0588260:intron 25.0%
!!! TATTGGGTGTTTTTGTTATA+GGG - chr4_2:10460867-10460886 Msa0588260:intron 25.0%
! TTTCATATGTGTCTTCTTTA+AGG - chr4_2:10461065-10461084 Msa0588260:intron 25.0%
!!! TCGAATTCTGTTTTTTTCAA+CGG + chr4_2:10461130-10461149 None:intergenic 25.0%
!! AGCTTTGATTAGAAAGTATA+AGG - chr4_2:10461237-10461256 Msa0588260:intron 25.0%
!! GCTTTGATTAGAAAGTATAA+GGG - chr4_2:10461238-10461257 Msa0588260:intron 25.0%
!! CTTTGATTAGAAAGTATAAG+GGG - chr4_2:10461239-10461258 Msa0588260:intron 25.0%
! AATCAAAAGGATAGAAGAAA+TGG + chr4_2:10461469-10461488 None:intergenic 25.0%
! ATTGATATTCACACTGAATT+CGG + chr4_2:10461493-10461512 None:intergenic 25.0%
! TCATATTCTTCAATCCTTTA+AGG - chr4_2:10461519-10461538 Msa0588260:intron 25.0%
! TGATAGAATATGTTCTACAA+TGG + chr4_2:10461752-10461771 None:intergenic 25.0%
!! TTTTTGTTGCATTTTACTTG+AGG - chr4_2:10461836-10461855 Msa0588260:intron 25.0%
! ACAGATACAATTATATCACA+AGG + chr4_2:10461874-10461893 None:intergenic 25.0%
! AAAAGTGGAAAGAAATAGAA+GGG - chr4_2:10462100-10462119 Msa0588260:CDS 25.0%
! TACTAACATCAGCAATTAAA+AGG + chr4_2:10462206-10462225 None:intergenic 25.0%
!! TACCCTCACTAAATTATTTT+CGG + chr4_2:10460374-10460393 None:intergenic 25.0%
! AAAATAATTTAGTGAGGGTA+AGG - chr4_2:10460374-10460393 Msa0588260:three_prime_UTR 25.0%
! ACATGAATCAATAGAGTTAT+AGG + chr4_2:10460506-10460525 None:intergenic 25.0%
!! ACGAACAGATCTATATTTTA+GGG + chr4_2:10460605-10460624 None:intergenic 25.0%
!!! GTTTGCTTTTTGTGATTTTT+AGG - chr4_2:10460662-10460681 Msa0588260:three_prime_UTR 25.0%
! ACTGTATATTTGAATTGTGT+TGG - chr4_2:10460790-10460809 Msa0588260:intron 25.0%
!!! TTATTGGGTGTTTTTGTTAT+AGG - chr4_2:10460866-10460885 Msa0588260:intron 25.0%
!!! TATTGGGTGTTTTTGTTATA+GGG - chr4_2:10460867-10460886 Msa0588260:intron 25.0%
! TTTCATATGTGTCTTCTTTA+AGG - chr4_2:10461065-10461084 Msa0588260:intron 25.0%
!!! TCGAATTCTGTTTTTTTCAA+CGG + chr4_2:10461130-10461149 None:intergenic 25.0%
!! AGCTTTGATTAGAAAGTATA+AGG - chr4_2:10461237-10461256 Msa0588260:intron 25.0%
!! GCTTTGATTAGAAAGTATAA+GGG - chr4_2:10461238-10461257 Msa0588260:intron 25.0%
!! CTTTGATTAGAAAGTATAAG+GGG - chr4_2:10461239-10461258 Msa0588260:intron 25.0%
! AATCAAAAGGATAGAAGAAA+TGG + chr4_2:10461469-10461488 None:intergenic 25.0%
! ATTGATATTCACACTGAATT+CGG + chr4_2:10461493-10461512 None:intergenic 25.0%
! TCATATTCTTCAATCCTTTA+AGG - chr4_2:10461519-10461538 Msa0588260:intron 25.0%
! TGATAGAATATGTTCTACAA+TGG + chr4_2:10461752-10461771 None:intergenic 25.0%
!! TTTTTGTTGCATTTTACTTG+AGG - chr4_2:10461836-10461855 Msa0588260:intron 25.0%
! ACAGATACAATTATATCACA+AGG + chr4_2:10461874-10461893 None:intergenic 25.0%
! AAAAGTGGAAAGAAATAGAA+GGG - chr4_2:10462100-10462119 Msa0588260:CDS 25.0%
! TACTAACATCAGCAATTAAA+AGG + chr4_2:10462206-10462225 None:intergenic 25.0%
TACCCGAAAATAATTTAGTG+AGG - chr4_2:10460368-10460387 Msa0588260:three_prime_UTR 30.0%
ACCCGAAAATAATTTAGTGA+GGG - chr4_2:10460369-10460388 Msa0588260:three_prime_UTR 30.0%
! ACCCTCACTAAATTATTTTC+GGG + chr4_2:10460373-10460392 None:intergenic 30.0%
ATAGAGTTATAGGAGATTGA+AGG + chr4_2:10460496-10460515 None:intergenic 30.0%
! CACGAACAGATCTATATTTT+AGG + chr4_2:10460606-10460625 None:intergenic 30.0%
!! TGCTTTTTGTGATTTTTAGG+TGG - chr4_2:10460665-10460684 Msa0588260:three_prime_UTR 30.0%
TAATCCTTCTTATCAGACTT+TGG + chr4_2:10460713-10460732 None:intergenic 30.0%
!! TTTGAGCTTGGTTGTTTTAT+TGG - chr4_2:10460850-10460869 Msa0588260:intron 30.0%
!! TTGAGCTTGGTTGTTTTATT+GGG - chr4_2:10460851-10460870 Msa0588260:intron 30.0%
TATGAAAAATCAGCAAACAG+TGG + chr4_2:10461052-10461071 None:intergenic 30.0%
!! AAAGTATAAGGGGAGTATTT+GGG - chr4_2:10461249-10461268 Msa0588260:intron 30.0%
GGATATTAATGACAGACAAT+AGG - chr4_2:10461271-10461290 Msa0588260:intron 30.0%
GGTAAGAAGGAAATATACAT+AGG - chr4_2:10461323-10461342 Msa0588260:intron 30.0%
ACCATACCTAGAAATTAGAA+TGG - chr4_2:10461547-10461566 Msa0588260:intron 30.0%
CCATACCTAGAAATTAGAAT+GGG - chr4_2:10461548-10461567 Msa0588260:intron 30.0%
GTGGAATATTGTGTTAAGAA+TGG - chr4_2:10461604-10461623 Msa0588260:intron 30.0%
! AAGGCTAATCTGAAATATGT+TGG + chr4_2:10461650-10461669 None:intergenic 30.0%
!!! CATATTTCAGATTAGCCTTT+TGG - chr4_2:10461651-10461670 Msa0588260:intron 30.0%
TTGAGATTTCTGCTGTTAAT+TGG - chr4_2:10461801-10461820 Msa0588260:intron 30.0%
CAACAGAATCAGGTAAAAAT+AGG + chr4_2:10462003-10462022 None:intergenic 30.0%
GAAAAGTGGAAAGAAATAGA+AGG - chr4_2:10462099-10462118 Msa0588260:CDS 30.0%
AATACATCTGTTTAGTGTTG+TGG - chr4_2:10462303-10462322 Msa0588260:intron 30.0%
TCTATTATGTTCTCACCTTA+TGG - chr4_2:10462386-10462405 Msa0588260:five_prime_UTR 30.0%
TACCCGAAAATAATTTAGTG+AGG - chr4_2:10460368-10460387 Msa0588260:three_prime_UTR 30.0%
ACCCGAAAATAATTTAGTGA+GGG - chr4_2:10460369-10460388 Msa0588260:three_prime_UTR 30.0%
! ACCCTCACTAAATTATTTTC+GGG + chr4_2:10460373-10460392 None:intergenic 30.0%
ATAGAGTTATAGGAGATTGA+AGG + chr4_2:10460496-10460515 None:intergenic 30.0%
! CACGAACAGATCTATATTTT+AGG + chr4_2:10460606-10460625 None:intergenic 30.0%
!! TGCTTTTTGTGATTTTTAGG+TGG - chr4_2:10460665-10460684 Msa0588260:three_prime_UTR 30.0%
TAATCCTTCTTATCAGACTT+TGG + chr4_2:10460713-10460732 None:intergenic 30.0%
!! TTTGAGCTTGGTTGTTTTAT+TGG - chr4_2:10460850-10460869 Msa0588260:intron 30.0%
!! TTGAGCTTGGTTGTTTTATT+GGG - chr4_2:10460851-10460870 Msa0588260:intron 30.0%
TATGAAAAATCAGCAAACAG+TGG + chr4_2:10461052-10461071 None:intergenic 30.0%
!! AAAGTATAAGGGGAGTATTT+GGG - chr4_2:10461249-10461268 Msa0588260:intron 30.0%
GGATATTAATGACAGACAAT+AGG - chr4_2:10461271-10461290 Msa0588260:intron 30.0%
GGTAAGAAGGAAATATACAT+AGG - chr4_2:10461323-10461342 Msa0588260:intron 30.0%
ACCATACCTAGAAATTAGAA+TGG - chr4_2:10461547-10461566 Msa0588260:intron 30.0%
CCATACCTAGAAATTAGAAT+GGG - chr4_2:10461548-10461567 Msa0588260:intron 30.0%
GTGGAATATTGTGTTAAGAA+TGG - chr4_2:10461604-10461623 Msa0588260:intron 30.0%
! AAGGCTAATCTGAAATATGT+TGG + chr4_2:10461650-10461669 None:intergenic 30.0%
!!! CATATTTCAGATTAGCCTTT+TGG - chr4_2:10461651-10461670 Msa0588260:intron 30.0%
TTGAGATTTCTGCTGTTAAT+TGG - chr4_2:10461801-10461820 Msa0588260:intron 30.0%
CAACAGAATCAGGTAAAAAT+AGG + chr4_2:10462003-10462022 None:intergenic 30.0%
GAAAAGTGGAAAGAAATAGA+AGG - chr4_2:10462099-10462118 Msa0588260:CDS 30.0%
AATACATCTGTTTAGTGTTG+TGG - chr4_2:10462303-10462322 Msa0588260:intron 30.0%
TCTATTATGTTCTCACCTTA+TGG - chr4_2:10462386-10462405 Msa0588260:five_prime_UTR 30.0%
TGATAAGAAGGATTACGATG+AGG - chr4_2:10460718-10460737 Msa0588260:CDS 35.0%
AAAAATCAGCAAACAGTGGT+AGG + chr4_2:10461048-10461067 None:intergenic 35.0%
!! GAAAGTATAAGGGGAGTATT+TGG - chr4_2:10461248-10461267 Msa0588260:intron 35.0%
!! AAGTATAAGGGGAGTATTTG+GGG - chr4_2:10461250-10461269 Msa0588260:intron 35.0%
TGACAGACAATAGGATATTC+AGG - chr4_2:10461280-10461299 Msa0588260:intron 35.0%
CAGGTTTGCATAACAGAATT+AGG - chr4_2:10461299-10461318 Msa0588260:intron 35.0%
GTTTGCATAACAGAATTAGG+AGG - chr4_2:10461302-10461321 Msa0588260:intron 35.0%
AACAGAATTAGGAGGTAAGA+AGG - chr4_2:10461310-10461329 Msa0588260:intron 35.0%
TTTGAAAGTCATGTCTCATG+AGG - chr4_2:10461416-10461435 Msa0588260:intron 35.0%
TTGAAAGTCATGTCTCATGA+GGG - chr4_2:10461417-10461436 Msa0588260:intron 35.0%
CACTGAATTCGGTAATCAAA+AGG + chr4_2:10461482-10461501 None:intergenic 35.0%
! CCCATTCTAATTTCTAGGTA+TGG + chr4_2:10461551-10461570 None:intergenic 35.0%
! TAAGGTTTGAGACCCTTATT+GGG - chr4_2:10461709-10461728 Msa0588260:intron 35.0%
GAAATCTTCCTACCCAATAA+GGG + chr4_2:10461724-10461743 None:intergenic 35.0%
TGAAATCTTCCTACCCAATA+AGG + chr4_2:10461725-10461744 None:intergenic 35.0%
TTATTGGGTAGGAAGATTTC+AGG - chr4_2:10461724-10461743 Msa0588260:intron 35.0%
TATTGGGTAGGAAGATTTCA+GGG - chr4_2:10461725-10461744 Msa0588260:intron 35.0%
!! CTGTATTTTGTAGGTTGACA+TGG - chr4_2:10461890-10461909 Msa0588260:intron 35.0%
! TTTTACCTGATTCTGTTGCA+TGG - chr4_2:10462005-10462024 Msa0588260:intron 35.0%
CACAATAAGAGATGTTCTCA+TGG + chr4_2:10462180-10462199 None:intergenic 35.0%
TACATCATCACGATAAGCTT+TGG + chr4_2:10462234-10462253 None:intergenic 35.0%
ACAGATGTATTAAGCCCAAA+GGG + chr4_2:10462294-10462313 None:intergenic 35.0%
AACAGATGTATTAAGCCCAA+AGG + chr4_2:10462295-10462314 None:intergenic 35.0%
CAAGGTAAGTTGTTACCATA+AGG + chr4_2:10462404-10462423 None:intergenic 35.0%
!!! GATTCTTGAATGCCGTTTTT+TGG - chr4_2:10462434-10462453 Msa0588260:five_prime_UTR 35.0%
CCAAAGCTAATGCCAAAAAA+CGG + chr4_2:10462449-10462468 None:intergenic 35.0%
TGATAAGAAGGATTACGATG+AGG - chr4_2:10460718-10460737 Msa0588260:CDS 35.0%
AAAAATCAGCAAACAGTGGT+AGG + chr4_2:10461048-10461067 None:intergenic 35.0%
!! GAAAGTATAAGGGGAGTATT+TGG - chr4_2:10461248-10461267 Msa0588260:intron 35.0%
!! AAGTATAAGGGGAGTATTTG+GGG - chr4_2:10461250-10461269 Msa0588260:intron 35.0%
TGACAGACAATAGGATATTC+AGG - chr4_2:10461280-10461299 Msa0588260:intron 35.0%
CAGGTTTGCATAACAGAATT+AGG - chr4_2:10461299-10461318 Msa0588260:intron 35.0%
GTTTGCATAACAGAATTAGG+AGG - chr4_2:10461302-10461321 Msa0588260:intron 35.0%
AACAGAATTAGGAGGTAAGA+AGG - chr4_2:10461310-10461329 Msa0588260:intron 35.0%
TTTGAAAGTCATGTCTCATG+AGG - chr4_2:10461416-10461435 Msa0588260:intron 35.0%
TTGAAAGTCATGTCTCATGA+GGG - chr4_2:10461417-10461436 Msa0588260:intron 35.0%
CACTGAATTCGGTAATCAAA+AGG + chr4_2:10461482-10461501 None:intergenic 35.0%
! CCCATTCTAATTTCTAGGTA+TGG + chr4_2:10461551-10461570 None:intergenic 35.0%
! TAAGGTTTGAGACCCTTATT+GGG - chr4_2:10461709-10461728 Msa0588260:intron 35.0%
GAAATCTTCCTACCCAATAA+GGG + chr4_2:10461724-10461743 None:intergenic 35.0%
TGAAATCTTCCTACCCAATA+AGG + chr4_2:10461725-10461744 None:intergenic 35.0%
TTATTGGGTAGGAAGATTTC+AGG - chr4_2:10461724-10461743 Msa0588260:intron 35.0%
TATTGGGTAGGAAGATTTCA+GGG - chr4_2:10461725-10461744 Msa0588260:intron 35.0%
!! CTGTATTTTGTAGGTTGACA+TGG - chr4_2:10461890-10461909 Msa0588260:intron 35.0%
! TTTTACCTGATTCTGTTGCA+TGG - chr4_2:10462005-10462024 Msa0588260:intron 35.0%
CACAATAAGAGATGTTCTCA+TGG + chr4_2:10462180-10462199 None:intergenic 35.0%
TACATCATCACGATAAGCTT+TGG + chr4_2:10462234-10462253 None:intergenic 35.0%
ACAGATGTATTAAGCCCAAA+GGG + chr4_2:10462294-10462313 None:intergenic 35.0%
AACAGATGTATTAAGCCCAA+AGG + chr4_2:10462295-10462314 None:intergenic 35.0%
CAAGGTAAGTTGTTACCATA+AGG + chr4_2:10462404-10462423 None:intergenic 35.0%
!!! GATTCTTGAATGCCGTTTTT+TGG - chr4_2:10462434-10462453 Msa0588260:five_prime_UTR 35.0%
CCAAAGCTAATGCCAAAAAA+CGG + chr4_2:10462449-10462468 None:intergenic 35.0%
!!! TGGTTTTGGGTGAAGAGTTA+GGG + chr4_2:10460454-10460473 None:intergenic 40.0%
!!! ATGGTTTTGGGTGAAGAGTT+AGG + chr4_2:10460455-10460474 None:intergenic 40.0%
AGATTGAAGGTTACCTTGCT+TGG + chr4_2:10460483-10460502 None:intergenic 40.0%
! TCAGACTTTGGCTTCTTCAA+AGG + chr4_2:10460701-10460720 None:intergenic 40.0%
GAAGCCAAAGTCTGATAAGA+AGG - chr4_2:10460706-10460725 Msa0588260:CDS 40.0%
ATGTAGAGTAGAGAGTCTAG+AGG - chr4_2:10461382-10461401 Msa0588260:intron 40.0%
TGTAGAGTAGAGAGTCTAGA+GGG - chr4_2:10461383-10461402 Msa0588260:intron 40.0%
AGGTATGGTAGTTGCCTTAA+AGG + chr4_2:10461536-10461555 None:intergenic 40.0%
CCACTCCCATTCTAATTTCT+AGG + chr4_2:10461556-10461575 None:intergenic 40.0%
CCTAGAAATTAGAATGGGAG+TGG - chr4_2:10461553-10461572 Msa0588260:intron 40.0%
!!! TTCAGATTAGCCTTTTGGAG+TGG - chr4_2:10461656-10461675 Msa0588260:intron 40.0%
!!! TCAGATTAGCCTTTTGGAGT+GGG - chr4_2:10461657-10461676 Msa0588260:intron 40.0%
! GTAAGGTTTGAGACCCTTAT+TGG - chr4_2:10461708-10461727 Msa0588260:intron 40.0%
GGCTAACATCCAGAAGAAAA+AGG - chr4_2:10461911-10461930 Msa0588260:intron 40.0%
CATCCAGAAGAAAAAGGATG+AGG - chr4_2:10461917-10461936 Msa0588260:intron 40.0%
! TCTCCTCATCCTTTTTCTTC+TGG + chr4_2:10461923-10461942 None:intergenic 40.0%
GAAGAAAAAGGATGAGGAGA+AGG - chr4_2:10461923-10461942 Msa0588260:intron 40.0%
TCAATCCATGCAACAGAATC+AGG + chr4_2:10462013-10462032 None:intergenic 40.0%
! TTCTGTTGCATGGATTGAAC+AGG - chr4_2:10462015-10462034 Msa0588260:intron 40.0%
TCTGTTTAGTGTTGTGGCTT+TGG - chr4_2:10462309-10462328 Msa0588260:intron 40.0%
GCTTTGGCATATACTTCTCT+TGG - chr4_2:10462325-10462344 Msa0588260:exon 40.0%
CAAGAATCTCATCTCTCACA+AGG + chr4_2:10462422-10462441 None:intergenic 40.0%
!!! CCGTTTTTTGGCATTAGCTT+TGG - chr4_2:10462446-10462465 Msa0588260:five_prime_UTR 40.0%
!!! TGGTTTTGGGTGAAGAGTTA+GGG + chr4_2:10460454-10460473 None:intergenic 40.0%
!!! ATGGTTTTGGGTGAAGAGTT+AGG + chr4_2:10460455-10460474 None:intergenic 40.0%
AGATTGAAGGTTACCTTGCT+TGG + chr4_2:10460483-10460502 None:intergenic 40.0%
! TCAGACTTTGGCTTCTTCAA+AGG + chr4_2:10460701-10460720 None:intergenic 40.0%
GAAGCCAAAGTCTGATAAGA+AGG - chr4_2:10460706-10460725 Msa0588260:CDS 40.0%
ATGTAGAGTAGAGAGTCTAG+AGG - chr4_2:10461382-10461401 Msa0588260:intron 40.0%
TGTAGAGTAGAGAGTCTAGA+GGG - chr4_2:10461383-10461402 Msa0588260:intron 40.0%
AGGTATGGTAGTTGCCTTAA+AGG + chr4_2:10461536-10461555 None:intergenic 40.0%
CCACTCCCATTCTAATTTCT+AGG + chr4_2:10461556-10461575 None:intergenic 40.0%
CCTAGAAATTAGAATGGGAG+TGG - chr4_2:10461553-10461572 Msa0588260:intron 40.0%
!!! TTCAGATTAGCCTTTTGGAG+TGG - chr4_2:10461656-10461675 Msa0588260:intron 40.0%
!!! TCAGATTAGCCTTTTGGAGT+GGG - chr4_2:10461657-10461676 Msa0588260:intron 40.0%
! GTAAGGTTTGAGACCCTTAT+TGG - chr4_2:10461708-10461727 Msa0588260:intron 40.0%
GGCTAACATCCAGAAGAAAA+AGG - chr4_2:10461911-10461930 Msa0588260:intron 40.0%
CATCCAGAAGAAAAAGGATG+AGG - chr4_2:10461917-10461936 Msa0588260:intron 40.0%
! TCTCCTCATCCTTTTTCTTC+TGG + chr4_2:10461923-10461942 None:intergenic 40.0%
GAAGAAAAAGGATGAGGAGA+AGG - chr4_2:10461923-10461942 Msa0588260:intron 40.0%
TCAATCCATGCAACAGAATC+AGG + chr4_2:10462013-10462032 None:intergenic 40.0%
! TTCTGTTGCATGGATTGAAC+AGG - chr4_2:10462015-10462034 Msa0588260:intron 40.0%
TCTGTTTAGTGTTGTGGCTT+TGG - chr4_2:10462309-10462328 Msa0588260:intron 40.0%
GCTTTGGCATATACTTCTCT+TGG - chr4_2:10462325-10462344 Msa0588260:exon 40.0%
CAAGAATCTCATCTCTCACA+AGG + chr4_2:10462422-10462441 None:intergenic 40.0%
!!! CCGTTTTTTGGCATTAGCTT+TGG - chr4_2:10462446-10462465 Msa0588260:five_prime_UTR 40.0%
TGGGTGAAGAGTTAGGGTTT+GGG + chr4_2:10460448-10460467 None:intergenic 45.0%
TTGGGTGAAGAGTTAGGGTT+TGG + chr4_2:10460449-10460468 None:intergenic 45.0%
! TGCTTGGTCGACATGGTTTT+GGG + chr4_2:10460467-10460486 None:intergenic 45.0%
! TTGCTTGGTCGACATGGTTT+TGG + chr4_2:10460468-10460487 None:intergenic 45.0%
AAAACCATGTCGACCAAGCA+AGG - chr4_2:10460467-10460486 Msa0588260:three_prime_UTR 45.0%
!!! GGTGCAGTTTTGTTTGAGCT+TGG - chr4_2:10460838-10460857 Msa0588260:intron 45.0%
ATTGAGGACTTGAGAGGATG+TGG - chr4_2:10461585-10461604 Msa0588260:intron 45.0%
!!! CAGATTAGCCTTTTGGAGTG+GGG - chr4_2:10461658-10461677 Msa0588260:intron 45.0%
TAGACGGTCGGTCATTCATT+TGG - chr4_2:10461686-10461705 Msa0588260:intron 45.0%
GGTCGGTCATTCATTTGGTA+AGG - chr4_2:10461691-10461710 Msa0588260:intron 45.0%
! GTTTGAGACCCTTATTGGGT+AGG - chr4_2:10461713-10461732 Msa0588260:intron 45.0%
! ATGGATTGAACAGGCGCTAA+AGG - chr4_2:10462024-10462043 Msa0588260:intron 45.0%
TCCAAAAGATCCCTTCTGTG+AGG + chr4_2:10462065-10462084 None:intergenic 45.0%
! TCACAGAAGGGATCTTTTGG+AGG - chr4_2:10462064-10462083 Msa0588260:intron 45.0%
!! AAGGGATCTTTTGGAGGATC+TGG - chr4_2:10462070-10462089 Msa0588260:intron 45.0%
GGATCTGGACTCAAGAAAAG+TGG - chr4_2:10462085-10462104 Msa0588260:CDS 45.0%
AGCTTCTTTGTGTCTCCCTT+TGG - chr4_2:10462276-10462295 Msa0588260:intron 45.0%
GCTTCTTTGTGTCTCCCTTT+GGG - chr4_2:10462277-10462296 Msa0588260:intron 45.0%
TGGGTGAAGAGTTAGGGTTT+GGG + chr4_2:10460448-10460467 None:intergenic 45.0%
TTGGGTGAAGAGTTAGGGTT+TGG + chr4_2:10460449-10460468 None:intergenic 45.0%
! TGCTTGGTCGACATGGTTTT+GGG + chr4_2:10460467-10460486 None:intergenic 45.0%
! TTGCTTGGTCGACATGGTTT+TGG + chr4_2:10460468-10460487 None:intergenic 45.0%
AAAACCATGTCGACCAAGCA+AGG - chr4_2:10460467-10460486 Msa0588260:three_prime_UTR 45.0%
!!! GGTGCAGTTTTGTTTGAGCT+TGG - chr4_2:10460838-10460857 Msa0588260:intron 45.0%
ATTGAGGACTTGAGAGGATG+TGG - chr4_2:10461585-10461604 Msa0588260:intron 45.0%
!!! CAGATTAGCCTTTTGGAGTG+GGG - chr4_2:10461658-10461677 Msa0588260:intron 45.0%
TAGACGGTCGGTCATTCATT+TGG - chr4_2:10461686-10461705 Msa0588260:intron 45.0%
GGTCGGTCATTCATTTGGTA+AGG - chr4_2:10461691-10461710 Msa0588260:intron 45.0%
! GTTTGAGACCCTTATTGGGT+AGG - chr4_2:10461713-10461732 Msa0588260:intron 45.0%
! ATGGATTGAACAGGCGCTAA+AGG - chr4_2:10462024-10462043 Msa0588260:intron 45.0%
TCCAAAAGATCCCTTCTGTG+AGG + chr4_2:10462065-10462084 None:intergenic 45.0%
! TCACAGAAGGGATCTTTTGG+AGG - chr4_2:10462064-10462083 Msa0588260:intron 45.0%
!! AAGGGATCTTTTGGAGGATC+TGG - chr4_2:10462070-10462089 Msa0588260:intron 45.0%
GGATCTGGACTCAAGAAAAG+TGG - chr4_2:10462085-10462104 Msa0588260:CDS 45.0%
AGCTTCTTTGTGTCTCCCTT+TGG - chr4_2:10462276-10462295 Msa0588260:intron 45.0%
GCTTCTTTGTGTCTCCCTTT+GGG - chr4_2:10462277-10462296 Msa0588260:intron 45.0%
!!! TTAATCAATTTTTTTAATTT+TGG - chr4_2:10460908-10460927 Msa0588260:intron 5.0%
!!! TAATCAATTTTTTTAATTTT+GGG - chr4_2:10460909-10460928 Msa0588260:intron 5.0%
!!! TTAATCAATTTTTTTAATTT+TGG - chr4_2:10460908-10460927 Msa0588260:intron 5.0%
!!! TAATCAATTTTTTTAATTTT+GGG - chr4_2:10460909-10460928 Msa0588260:intron 5.0%
GTTACCTTGCTTGGTCGACA+TGG + chr4_2:10460474-10460493 None:intergenic 50.0%
ATTAGAATGGGAGTGGCTGC+AGG - chr4_2:10461560-10461579 Msa0588260:intron 50.0%
TTAGAATGGGAGTGGCTGCA+GGG - chr4_2:10461561-10461580 Msa0588260:intron 50.0%
!! CAGGGTATTGAGGACTTGAG+AGG - chr4_2:10461579-10461598 Msa0588260:intron 50.0%
GCTAAAGGAGCTGAAGGCTA+AGG - chr4_2:10462039-10462058 Msa0588260:intron 50.0%
AAGGCTAAGGCCTCACAGAA+GGG - chr4_2:10462052-10462071 Msa0588260:intron 50.0%
! GCCTCACAGAAGGGATCTTT+TGG - chr4_2:10462061-10462080 Msa0588260:intron 50.0%
GTTACCTTGCTTGGTCGACA+TGG + chr4_2:10460474-10460493 None:intergenic 50.0%
ATTAGAATGGGAGTGGCTGC+AGG - chr4_2:10461560-10461579 Msa0588260:intron 50.0%
TTAGAATGGGAGTGGCTGCA+GGG - chr4_2:10461561-10461580 Msa0588260:intron 50.0%
!! CAGGGTATTGAGGACTTGAG+AGG - chr4_2:10461579-10461598 Msa0588260:intron 50.0%
GCTAAAGGAGCTGAAGGCTA+AGG - chr4_2:10462039-10462058 Msa0588260:intron 50.0%
AAGGCTAAGGCCTCACAGAA+GGG - chr4_2:10462052-10462071 Msa0588260:intron 50.0%
! GCCTCACAGAAGGGATCTTT+TGG - chr4_2:10462061-10462080 Msa0588260:intron 50.0%
!!! TAGCCTTTTGGAGTGGGGAG+AGG - chr4_2:10461663-10461682 Msa0588260:intron 55.0%
CTACCTCTCCCCACTCCAAA+AGG + chr4_2:10461669-10461688 None:intergenic 55.0%
TTGGAGTGGGGAGAGGTAGA+CGG - chr4_2:10461670-10461689 Msa0588260:intron 55.0%
ACAGGCGCTAAAGGAGCTGA+AGG - chr4_2:10462033-10462052 Msa0588260:intron 55.0%
GAAGGCTAAGGCCTCACAGA+AGG - chr4_2:10462051-10462070 Msa0588260:intron 55.0%
!!! TAGCCTTTTGGAGTGGGGAG+AGG - chr4_2:10461663-10461682 Msa0588260:intron 55.0%
CTACCTCTCCCCACTCCAAA+AGG + chr4_2:10461669-10461688 None:intergenic 55.0%
TTGGAGTGGGGAGAGGTAGA+CGG - chr4_2:10461670-10461689 Msa0588260:intron 55.0%
ACAGGCGCTAAAGGAGCTGA+AGG - chr4_2:10462033-10462052 Msa0588260:intron 55.0%
GAAGGCTAAGGCCTCACAGA+AGG - chr4_2:10462051-10462070 Msa0588260:intron 55.0%
!! GGAGTGGCTGCAGGGTATTG+AGG - chr4_2:10461569-10461588 Msa0588260:intron 60.0%
AGTGGGGAGAGGTAGACGGT+CGG - chr4_2:10461674-10461693 Msa0588260:intron 60.0%
!! GGAGTGGCTGCAGGGTATTG+AGG - chr4_2:10461569-10461588 Msa0588260:intron 60.0%
AGTGGGGAGAGGTAGACGGT+CGG - chr4_2:10461674-10461693 Msa0588260:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 10460319 10462493 10460319 ID=Msa0588260;Name=Msa0588260
chr4_2 mRNA 10460319 10462493 10460319 ID=Msa0588260-mRNA-1;Parent=Msa0588260;Name=Msa0588260-mRNA-1;_AED=0.02;_eAED=0.02;_QI=154|1|1|1|0.66|1|4|376|64
chr4_2 exon 10460319 10460775 10460319 ID=Msa0588260-mRNA-1:exon:2954;Parent=Msa0588260-mRNA-1
chr4_2 exon 10460868 10460909 10460868 ID=Msa0588260-mRNA-1:exon:2953;Parent=Msa0588260-mRNA-1
chr4_2 exon 10462073 10462128 10462073 ID=Msa0588260-mRNA-1:exon:2952;Parent=Msa0588260-mRNA-1
chr4_2 exon 10462324 10462493 10462324 ID=Msa0588260-mRNA-1:exon:2951;Parent=Msa0588260-mRNA-1
chr4_2 five_prime_UTR 10462340 10462493 10462340 ID=Msa0588260-mRNA-1:five_prime_utr;Parent=Msa0588260-mRNA-1
chr4_2 CDS 10462324 10462339 10462324 ID=Msa0588260-mRNA-1:cds;Parent=Msa0588260-mRNA-1
chr4_2 CDS 10462073 10462128 10462073 ID=Msa0588260-mRNA-1:cds;Parent=Msa0588260-mRNA-1
chr4_2 CDS 10460868 10460909 10460868 ID=Msa0588260-mRNA-1:cds;Parent=Msa0588260-mRNA-1
chr4_2 CDS 10460695 10460775 10460695 ID=Msa0588260-mRNA-1:cds;Parent=Msa0588260-mRNA-1
chr4_2 three_prime_UTR 10460319 10460694 10460319 ID=Msa0588260-mRNA-1:three_prime_utr;Parent=Msa0588260-mRNA-1
Gene Sequence

>Msa0588260

ATGTCGACCAAGCAAGGTGGAAAAGCTAAGCCTTTGAAGAAGCCAAAGTCTGATAAGAAGGATTACGATGAGGTTGACATGGCTAACATCCAGAAGAAAAAGGATGAGGAGAAGGCGCTAAAGGAGCTGAAGGCTAAGGCCTCACAGAAGGGATCTTTTGGAGGATCTGGACTCAAGAAAAGTGGAAAGAAATAG

Protein sequence

>Msa0588260

MSTKQGGKAKPLKKPKSDKKDYDEVDMANIQKKKDEEKALKELKAKASQKGSFGGSGLKKSGKK*