Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1150640 | KAG6768521.1 | 63.834 | 506 | 163 | 8 | 25 | 523 | 28 | 520 | 0.0 | 634 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1150640 | A0A6N2MMQ6 | 64.876 | 484 | 150 | 7 | 25 | 502 | 150 | 619 | 0.0 | 632 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0729800 | Msa1150640 | 0.806923 | 6.496924e-50 | -8.615850e-47 |
| Msa0808010 | Msa1150640 | 0.808829 | 2.554787e-50 | -8.615850e-47 |
| Msa0808020 | Msa1150640 | 0.800218 | 1.597681e-48 | -8.615850e-47 |
| Msa0145750 | Msa1150640 | 0.801506 | 8.721443e-49 | -8.615850e-47 |
| Msa0227480 | Msa1150640 | 0.802146 | 6.443526e-49 | -8.615850e-47 |
| Msa0414410 | Msa1150640 | 0.822313 | 2.532927e-53 | -8.615850e-47 |
| Msa0414420 | Msa1150640 | 0.819240 | 1.288621e-52 | -8.615850e-47 |
| Msa0459160 | Msa1150640 | 0.833277 | 5.849458e-56 | -8.615850e-47 |
| Msa1025360 | Msa1150640 | 0.801662 | 8.099049e-49 | -8.615850e-47 |
| Msa1025370 | Msa1150640 | 0.814915 | 1.208057e-51 | -8.615850e-47 |
| Msa1044830 | Msa1150640 | 0.815283 | 1.000846e-51 | -8.615850e-47 |
| Msa1044840 | Msa1150640 | 0.805453 | 1.325475e-49 | -8.615850e-47 |
| Msa1100980 | Msa1150640 | 0.808518 | 2.978407e-50 | -8.615850e-47 |
| Msa0267000 | Msa1150640 | 0.807454 | 5.015901e-50 | -8.615850e-47 |
| Msa0360510 | Msa1150640 | 0.802781 | 4.767077e-49 | -8.615850e-47 |
| Msa1121200 | Msa1150640 | 0.800390 | 1.474252e-48 | -8.615850e-47 |
| Msa1150370 | Msa1150640 | 0.825035 | 5.837398e-54 | -8.615850e-47 |
| Msa1150640 | Msa1285930 | 0.806859 | 6.702770e-50 | -8.615850e-47 |
| Msa1150640 | Msa1287800 | 0.836757 | 7.760546e-57 | -8.615850e-47 |
| Msa1150640 | Msa1287810 | 0.818708 | 1.702175e-52 | -8.615850e-47 |
| Msa1150640 | Msa1320300 | 0.806680 | 7.311559e-50 | -8.615850e-47 |
| Msa0564890 | Msa1150640 | 0.800744 | 1.248398e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1150640 | MtrunA17_Chr4g0004391 | 34.014 | 294 | 178 | 2 | 50 | 343 | 31 | 308 | 7.63e-64 | 214 |
| Msa1150640 | MtrunA17_Chr7g0219261 | 36.076 | 316 | 165 | 7 | 43 | 353 | 18 | 301 | 6.38e-57 | 194 |
| Msa1150640 | MtrunA17_Chr2g0326501 | 36.076 | 316 | 165 | 7 | 43 | 353 | 18 | 301 | 6.38e-57 | 194 |
| Msa1150640 | MtrunA17_Chr7g0264751 | 26.316 | 418 | 267 | 10 | 64 | 465 | 52 | 444 | 1.09e-42 | 159 |
| Msa1150640 | MtrunA17_Chr3g0083121 | 23.775 | 408 | 262 | 10 | 40 | 411 | 8 | 402 | 4.44e-33 | 132 |
| Msa1150640 | MtrunA17_Chr6g0474221 | 27.891 | 294 | 177 | 8 | 56 | 334 | 26 | 299 | 2.93e-31 | 125 |
| Msa1150640 | MtrunA17_Chr1g0179951 | 28.723 | 282 | 165 | 9 | 62 | 334 | 42 | 296 | 2.90e-30 | 123 |
| Msa1150640 | MtrunA17_Chr2g0302521 | 26.502 | 283 | 175 | 7 | 56 | 331 | 39 | 295 | 3.08e-30 | 122 |
| Msa1150640 | MtrunA17_Chr1g0172701 | 27.857 | 280 | 171 | 9 | 62 | 335 | 58 | 312 | 1.09e-26 | 111 |
| Msa1150640 | MtrunA17_Chr3g0145811 | 29.534 | 193 | 129 | 3 | 64 | 250 | 36 | 227 | 3.38e-26 | 108 |
| Msa1150640 | MtrunA17_Chr1g0163881 | 25.969 | 258 | 167 | 6 | 83 | 334 | 8 | 247 | 1.34e-24 | 104 |
| Msa1150640 | MtrunA17_Chr8g0334511 | 23.944 | 355 | 214 | 12 | 179 | 495 | 1 | 337 | 1.72e-20 | 95.1 |
| Msa1150640 | MtrunA17_Chr6g0468811 | 26.923 | 234 | 160 | 7 | 47 | 278 | 410 | 634 | 1.22e-16 | 84.0 |
| Msa1150640 | MtrunA17_Chr3g0135421 | 24.887 | 221 | 138 | 6 | 110 | 327 | 4 | 199 | 1.95e-16 | 80.1 |
| Msa1150640 | MtrunA17_Chr1g0208701 | 21.394 | 416 | 293 | 13 | 57 | 464 | 6 | 395 | 2.55e-16 | 83.2 |
| Msa1150640 | MtrunA17_Chr1g0208691 | 21.394 | 416 | 293 | 13 | 57 | 464 | 6 | 395 | 2.59e-16 | 83.2 |
| Msa1150640 | MtrunA17_Chr3g0097451 | 30.049 | 203 | 122 | 5 | 311 | 495 | 38 | 238 | 3.60e-16 | 78.6 |
| Msa1150640 | MtrunA17_Chr4g0071691 | 28.409 | 176 | 118 | 6 | 106 | 274 | 4 | 178 | 1.09e-15 | 76.3 |
| Msa1150640 | MtrunA17_Chr3g0134961 | 26.316 | 171 | 116 | 4 | 87 | 251 | 3 | 169 | 2.75e-15 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1150640 | AT1G21280.1 | 26.804 | 194 | 132 | 4 | 65 | 250 | 38 | 229 | 4.41e-22 | 95.9 |
Find 158 sgRNAs with CRISPR-Local
Find 279 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCTTACCAAATACTTTAT+TGG | 0.151867 | 7_4:+34252186 | Msa1150640:CDS |
| TGGGTATTTGATTCTGGTTT+TGG | 0.200597 | 7_4:-34250971 | None:intergenic |
| TACAGATTTCATTGAATCTT+TGG | 0.218079 | 7_4:+34250911 | Msa1150640:CDS |
| TGGTTATGGGTATTTGATTC+TGG | 0.232740 | 7_4:-34250977 | None:intergenic |
| AGTTACCATACAGGTGTAAT+AGG | 0.243466 | 7_4:+34253700 | Msa1150640:CDS |
| GATTAACCAACCTTTGACTA+TGG | 0.244930 | 7_4:-34251177 | None:intergenic |
| TTAAACTCATTCCACCATTC+TGG | 0.264271 | 7_4:-34251836 | None:intergenic |
| ATAAAATTGCTAACAAGATT+TGG | 0.267618 | 7_4:-34251212 | None:intergenic |
| GGAATGTTCATTTGTGGTTA+TGG | 0.275150 | 7_4:-34250991 | None:intergenic |
| GATGGAACCAATAAAGTATT+TGG | 0.291788 | 7_4:-34252193 | None:intergenic |
| GCAGGACAATCCATTGGATT+TGG | 0.323531 | 7_4:-34251416 | None:intergenic |
| TTTATCATTTGAAGGTTGTT+TGG | 0.325335 | 7_4:-34251680 | None:intergenic |
| TCCAACAGCAAAACAGGTTT+GGG | 0.330841 | 7_4:+34251241 | Msa1150640:CDS |
| TTCCAACAGCAAAACAGGTT+TGG | 0.331258 | 7_4:+34251240 | Msa1150640:CDS |
| AAACAACCTTCAAATGATAA+AGG | 0.336404 | 7_4:+34251682 | Msa1150640:CDS |
| CTCCTCCCTTTATCATTTGA+AGG | 0.336989 | 7_4:-34251688 | None:intergenic |
| GCCGTTTATTTGTTTCTTCA+AGG | 0.337659 | 7_4:-34251315 | None:intergenic |
| ACAGTTCCAGCCCCACTAAC+AGG | 0.341723 | 7_4:-34252145 | None:intergenic |
| GGGATCTGCTGGTCCAGGTT+GGG | 0.351458 | 7_4:-34251126 | None:intergenic |
| GAACATTCCGCTGCACAAAT+TGG | 0.351533 | 7_4:+34251005 | Msa1150640:CDS |
| TTATGACAACCAAAGGAGTT+AGG | 0.357798 | 7_4:+34251645 | Msa1150640:CDS |
| GAATGTTCATTTGTGGTTAT+GGG | 0.360529 | 7_4:-34250990 | None:intergenic |
| ATTGCGGTAACCTACTTTGA+TGG | 0.362267 | 7_4:+34251269 | Msa1150640:CDS |
| ACAATAATCTCCAAGGTCTA+TGG | 0.364044 | 7_4:+34251372 | Msa1150640:CDS |
| TTGTAATCCCCTAACTCCTT+TGG | 0.370309 | 7_4:-34251654 | None:intergenic |
| GATGTTTACGACGTTAATAA+TGG | 0.372329 | 7_4:+34253540 | Msa1150640:CDS |
| TTATCACCAGCTAGTTTAGT+AGG | 0.396425 | 7_4:-34253648 | None:intergenic |
| GGATCTGCTGGTCCAGGTTG+GGG | 0.403900 | 7_4:-34251125 | None:intergenic |
| ACTAGCATTATCAATGCTAA+TGG | 0.405490 | 7_4:+34252112 | Msa1150640:CDS |
| TCCTTGATGGGCTAGATGAC+AGG | 0.409419 | 7_4:+34251489 | Msa1150640:CDS |
| ATGGTACCAACTATGCTTTA+TGG | 0.415620 | 7_4:+34251039 | Msa1150640:CDS |
| AATGGTTGGATAGTGGATTC+AGG | 0.416452 | 7_4:+34252028 | Msa1150640:CDS |
| GTTACCATACAGGTGTAATA+GGG | 0.418854 | 7_4:+34253701 | Msa1150640:CDS |
| ATCTCAGGAAAAGACAAGTT+GGG | 0.419385 | 7_4:+34251083 | Msa1150640:CDS |
| TCCTCACTTCATATGACAAC+AGG | 0.423985 | 7_4:+34252002 | Msa1150640:CDS |
| TTGCTGCGTGCGCACGAGAG+AGG | 0.425148 | 7_4:-34253594 | None:intergenic |
| AGTATTTGGTAAGGAAATTG+AGG | 0.425695 | 7_4:-34252179 | None:intergenic |
| CAGATCCCACTTTCCGAAGA+TGG | 0.426013 | 7_4:+34251141 | Msa1150640:CDS |
| GTTAATAATGGAGCTATTGA+TGG | 0.433123 | 7_4:+34253552 | Msa1150640:CDS |
| AAATACCCTGTTAGTGGGGC+TGG | 0.436264 | 7_4:+34252139 | Msa1150640:CDS |
| AGGTTGGTTAATCAATTCAA+TGG | 0.437840 | 7_4:+34251187 | Msa1150640:CDS |
| AACAACCTTCAAATGATAAA+GGG | 0.438576 | 7_4:+34251683 | Msa1150640:CDS |
| TCCTCACCAAGGAGATCATT+GGG | 0.438857 | 7_4:+34252308 | Msa1150640:CDS |
| TATGACAACCAAAGGAGTTA+GGG | 0.442838 | 7_4:+34251646 | Msa1150640:CDS |
| ATCCTCACCAAGGAGATCAT+TGG | 0.457286 | 7_4:+34252307 | Msa1150640:CDS |
| AAAGAAACCGCAGGTGGCTC+GGG | 0.461095 | 7_4:+34251872 | Msa1150640:CDS |
| ATCAAAGGTCAAGCAATTGA+TGG | 0.464923 | 7_4:+34251746 | Msa1150640:CDS |
| TTACCCCTATTACACCTGTA+TGG | 0.467462 | 7_4:-34253705 | None:intergenic |
| CATAAGCTTGTTCAACAGTT+GGG | 0.468851 | 7_4:-34251553 | None:intergenic |
| GAAAGAAACCGCAGGTGGCT+CGG | 0.472416 | 7_4:+34251871 | Msa1150640:CDS |
| TGTTCTCCATCTTCGGAAAG+TGG | 0.473795 | 7_4:-34251147 | None:intergenic |
| GACAAGTTGGGGTACATCAA+TGG | 0.474369 | 7_4:+34251095 | Msa1150640:CDS |
| ATGTCTGGTGAATACCGATC+AGG | 0.475240 | 7_4:-34253732 | None:intergenic |
| CGACCCTTCTCTCCAATGTC+TGG | 0.476386 | 7_4:-34253747 | None:intergenic |
| CAATTTCTCGCCATAGACCT+TGG | 0.477257 | 7_4:-34251382 | None:intergenic |
| TCGGGACGAGTGGCCTTCGC+TGG | 0.478480 | 7_4:+34251890 | Msa1150640:CDS |
| CTTCGGAAAGTGGGATCTGC+TGG | 0.479434 | 7_4:-34251137 | None:intergenic |
| GAAAGCTACATCGTTATCCT+TGG | 0.484880 | 7_4:-34253481 | None:intergenic |
| AGAGTGTATACTTTCCTTGA+TGG | 0.491576 | 7_4:+34251476 | Msa1150640:CDS |
| GAGTTAAATACCCTGTTAGT+GGG | 0.494506 | 7_4:+34252134 | Msa1150640:CDS |
| TATCTCAGGAAAAGACAAGT+TGG | 0.499169 | 7_4:+34251082 | Msa1150640:CDS |
| GCCTTGAAGAAACAAATAAA+CGG | 0.501330 | 7_4:+34251314 | Msa1150640:CDS |
| GCATAAGCTTGTTCAACAGT+TGG | 0.504050 | 7_4:-34251554 | None:intergenic |
| GACACATGCTTCAAGCTGCA+TGG | 0.507739 | 7_4:+34251809 | Msa1150640:CDS |
| TGCTGCGTGCGCACGAGAGA+GGG | 0.508443 | 7_4:-34253593 | None:intergenic |
| GAGTGTATACTTTCCTTGAT+GGG | 0.511012 | 7_4:+34251477 | Msa1150640:CDS |
| GGAGGAGATCCATCTTCAAA+TGG | 0.512025 | 7_4:+34251704 | Msa1150640:CDS |
| ATGGTTGGATAGTGGATTCA+GGG | 0.512961 | 7_4:+34252029 | Msa1150640:CDS |
| CGACAAACAGTGATGCTAGC+AGG | 0.513725 | 7_4:+34251599 | Msa1150640:CDS |
| TGTTAGTGGGGCTGGAACTG+TGG | 0.515600 | 7_4:+34252147 | Msa1150640:CDS |
| TGCAGCGGAATGTTCATTTG+TGG | 0.518352 | 7_4:-34250997 | None:intergenic |
| GGAGTTAAATACCCTGTTAG+TGG | 0.522252 | 7_4:+34252133 | Msa1150640:CDS |
| AAAGTGGGATCTGCTGGTCC+AGG | 0.523258 | 7_4:-34251131 | None:intergenic |
| CGCAGGTGGCTCGGGACGAG+TGG | 0.523596 | 7_4:+34251880 | Msa1150640:CDS |
| GCTTGTTCAACAGTTGGGAA+TGG | 0.525343 | 7_4:-34251548 | None:intergenic |
| GTGGTTGAGATGTATATCTC+AGG | 0.525455 | 7_4:+34251068 | Msa1150640:CDS |
| TGGGATCTGCTGGTCCAGGT+TGG | 0.525970 | 7_4:-34251127 | None:intergenic |
| TCGGTTTAGTCTTTGATGCA+AGG | 0.529467 | 7_4:-34252084 | None:intergenic |
| ATGACAACAGGTACAATGGT+TGG | 0.533655 | 7_4:+34252014 | Msa1150640:CDS |
| GTTCTCCATCTTCGGAAAGT+GGG | 0.533901 | 7_4:-34251146 | None:intergenic |
| AGCTGCATGGGTATCCAGAA+TGG | 0.540058 | 7_4:+34251822 | Msa1150640:CDS |
| TTGATAATGCTAGTCTGTCT+CGG | 0.540467 | 7_4:-34252103 | None:intergenic |
| TGATATGAGTTTAGTTGAGA+GGG | 0.542058 | 7_4:-34252215 | None:intergenic |
| ATGAGTTTAGTTGAGAGGGA+TGG | 0.542225 | 7_4:-34252211 | None:intergenic |
| AACCAATAAAGTATTTGGTA+AGG | 0.542806 | 7_4:-34252188 | None:intergenic |
| CTAGTTATCAGTTACCATAC+AGG | 0.545739 | 7_4:+34253691 | Msa1150640:CDS |
| GCCTGTCATCTAGCCCATCA+AGG | 0.545824 | 7_4:-34251490 | None:intergenic |
| ACATACCTCATGGACATCCT+CGG | 0.547584 | 7_4:-34253625 | None:intergenic |
| ATATCAGCAGGACAATCCAT+TGG | 0.549135 | 7_4:-34251422 | None:intergenic |
| TCAGCAAATACACAAAATGA+AGG | 0.550244 | 7_4:+34251962 | Msa1150640:CDS |
| CAGGTACAATGGTTGGATAG+TGG | 0.550947 | 7_4:+34252021 | Msa1150640:CDS |
| TTGTGACCATAAAGCATAGT+TGG | 0.551698 | 7_4:-34251045 | None:intergenic |
| CTGATATGAGTTTAGTTGAG+AGG | 0.552113 | 7_4:-34252216 | None:intergenic |
| TTCACCAGACATTGGAGAGA+AGG | 0.552171 | 7_4:+34253743 | Msa1150640:CDS |
| ACAGAAAATGCCATAGTCAA+AGG | 0.558717 | 7_4:+34251167 | Msa1150640:CDS |
| ACCACGCCCAATGATCTCCT+TGG | 0.558774 | 7_4:-34252314 | None:intergenic |
| GGTCAAGCAATTGATGGTGG+TGG | 0.559501 | 7_4:+34251752 | Msa1150640:CDS |
| TAATATTGAGCATGATGCCT+TGG | 0.561619 | 7_4:+34253449 | Msa1150640:CDS |
| TATTGAGCATGATGCCTTGG+TGG | 0.561828 | 7_4:+34253452 | Msa1150640:CDS |
| ACAACTTTCTCTAGTTTCGC+AGG | 0.564954 | 7_4:+34251922 | Msa1150640:CDS |
| CAGCTTGAAGCATGTGTCAC+GGG | 0.567271 | 7_4:-34251804 | None:intergenic |
| TGTCTGGTGAATACCGATCA+GGG | 0.568338 | 7_4:-34253731 | None:intergenic |
| CATACCTCATGGACATCCTC+GGG | 0.572811 | 7_4:-34253624 | None:intergenic |
| TTGTGGTTCTGCACCAGCGA+AGG | 0.573932 | 7_4:-34251903 | None:intergenic |
| AGTGTCAGATCCATCAAAGT+AGG | 0.574342 | 7_4:-34251279 | None:intergenic |
| GATCGGTATTCACCAGACAT+TGG | 0.575784 | 7_4:+34253735 | Msa1150640:CDS |
| ACACATGCTTCAAGCTGCAT+GGG | 0.577536 | 7_4:+34251810 | Msa1150640:CDS |
| AAAATGCCATAGTCAAAGGT+TGG | 0.578316 | 7_4:+34251171 | Msa1150640:CDS |
| GTATGTCCTACTAAACTAGC+TGG | 0.579602 | 7_4:+34253642 | Msa1150640:CDS |
| AATGATATAATTGATGTGGC+TGG | 0.582542 | 7_4:+34253513 | Msa1150640:CDS |
| ACTAATGAAGGTGGGAGTGA+TGG | 0.584747 | 7_4:+34253420 | Msa1150640:intron |
| GTTTAGTAGGACATACCTCA+TGG | 0.586374 | 7_4:-34253635 | None:intergenic |
| TCACCAGACATTGGAGAGAA+GGG | 0.591694 | 7_4:+34253744 | Msa1150640:CDS |
| AATGGAGATATTCCCCAACC+TGG | 0.592057 | 7_4:+34251113 | Msa1150640:CDS |
| AAAACAAGTACAAAGATCAA+AGG | 0.593562 | 7_4:+34251731 | Msa1150640:CDS |
| CTATGCTTTATGGTCACAAG+TGG | 0.597700 | 7_4:+34251049 | Msa1150640:CDS |
| TTGGGAATGGTTGAATCTGA+AGG | 0.601565 | 7_4:-34251535 | None:intergenic |
| ACAGGTTTGGGATTCAATTG+CGG | 0.603110 | 7_4:+34251253 | Msa1150640:CDS |
| TCAGCAGTTATGACAACCAA+AGG | 0.604282 | 7_4:+34251638 | Msa1150640:CDS |
| CAAATTGGTATCAAACTCGA+TGG | 0.606749 | 7_4:+34251020 | Msa1150640:CDS |
| TCAACTAAACTCATATCAGT+AGG | 0.607136 | 7_4:+34252220 | Msa1150640:CDS |
| AAGAAACAGAAAGAAACCGC+AGG | 0.609138 | 7_4:+34251863 | Msa1150640:CDS |
| ACCAAGGAGATCATTGGGCG+TGG | 0.613009 | 7_4:+34252313 | Msa1150640:CDS |
| ATAAACGGCATGAAACAAGC+TGG | 0.616830 | 7_4:+34251329 | Msa1150640:CDS |
| TCATATGACAACAGGTACAA+TGG | 0.623645 | 7_4:+34252010 | Msa1150640:CDS |
| GGTGGTGGGTGCTCCCACTG+TGG | 0.623695 | 7_4:+34251767 | Msa1150640:CDS |
| TTGGGCGTGGTACTAAGAGA+GGG | 0.625270 | 7_4:+34252326 | Msa1150640:CDS |
| CAGTTCCAGCCCCACTAACA+GGG | 0.627937 | 7_4:-34252144 | None:intergenic |
| TCTCAGGAAAAGACAAGTTG+GGG | 0.628091 | 7_4:+34251084 | Msa1150640:CDS |
| TTTGATACCAATTTGTGCAG+CGG | 0.629890 | 7_4:-34251012 | None:intergenic |
| GCAGCTTGAAGCATGTGTCA+CGG | 0.630772 | 7_4:-34251805 | None:intergenic |
| GTCAAGCAATTGATGGTGGT+GGG | 0.631025 | 7_4:+34251753 | Msa1150640:CDS |
| GCTGCGTGCGCACGAGAGAG+GGG | 0.632043 | 7_4:-34253592 | None:intergenic |
| GCCCAATGATCTCCTTGGTG+AGG | 0.633345 | 7_4:-34252309 | None:intergenic |
| AACCTTCAAATGATAAAGGG+AGG | 0.636167 | 7_4:+34251686 | Msa1150640:CDS |
| TTACCATACAGGTGTAATAG+GGG | 0.637651 | 7_4:+34253702 | Msa1150640:CDS |
| TCAAAATGATATAATTGATG+TGG | 0.641417 | 7_4:+34253509 | Msa1150640:CDS |
| TCTTACTACAATAATCTCCA+AGG | 0.643016 | 7_4:+34251365 | Msa1150640:CDS |
| ATTGGGCGTGGTACTAAGAG+AGG | 0.643572 | 7_4:+34252325 | Msa1150640:CDS |
| GGAGATCCATCTTCAAATGG+AGG | 0.650421 | 7_4:+34251707 | Msa1150640:CDS |
| ATGACAACCAAAGGAGTTAG+GGG | 0.657292 | 7_4:+34251647 | Msa1150640:CDS |
| TGCATGGGTATCCAGAATGG+TGG | 0.660072 | 7_4:+34251825 | Msa1150640:CDS |
| GTCTGGTGAATACCGATCAG+GGG | 0.660769 | 7_4:-34253730 | None:intergenic |
| AGTTAAATACCCTGTTAGTG+GGG | 0.663625 | 7_4:+34252135 | Msa1150640:CDS |
| TGGTTGGATAGTGGATTCAG+GGG | 0.666384 | 7_4:+34252030 | Msa1150640:CDS |
| ATCCTTGGTTACATCCACCA+AGG | 0.669486 | 7_4:-34253466 | None:intergenic |
| TCTGGTGAATACCGATCAGG+GGG | 0.675832 | 7_4:-34253729 | None:intergenic |
| TGCGAAACTAGAGAAAGTTG+TGG | 0.676996 | 7_4:-34251920 | None:intergenic |
| AAAGGTCAAGCAATTGATGG+TGG | 0.677087 | 7_4:+34251749 | Msa1150640:CDS |
| CACTCCCGAGGATGTCCATG+AGG | 0.679453 | 7_4:+34253620 | Msa1150640:CDS |
| GTTCACGACATCATCGTCGT+CGG | 0.679464 | 7_4:-34250862 | None:intergenic |
| TGCCTTGGTGGATGTAACCA+AGG | 0.684480 | 7_4:+34253464 | Msa1150640:CDS |
| AACGGCATGAAACAAGCTGG+AGG | 0.687652 | 7_4:+34251332 | Msa1150640:CDS |
| AAACAGAAAGAAACCGCAGG+TGG | 0.688670 | 7_4:+34251866 | Msa1150640:CDS |
| GGGCGTGGTACTAAGAGAGG+GGG | 0.693746 | 7_4:+34252328 | Msa1150640:CDS |
| TGGGCGTGGTACTAAGAGAG+GGG | 0.698342 | 7_4:+34252327 | Msa1150640:CDS |
| ACCTGTTGTCATATGAAGTG+AGG | 0.702871 | 7_4:-34252003 | None:intergenic |
| TTATGCGCATGTTCGCAGAG+AGG | 0.744370 | 7_4:+34251571 | Msa1150640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTGAGTTAATTGAAAA+AGG | - | chr7_4:34252565-34252584 | None:intergenic | 15.0% |
| !! | ATAAAATTGCTAACAAGATT+TGG | - | chr7_4:34251215-34251234 | None:intergenic | 20.0% |
| !!! | AAAGTATAATACTCTTTTAC+AGG | + | chr7_4:34251448-34251467 | Msa1150640:CDS | 20.0% |
| !! | AATCACAATTGAAAATTGAT+GGG | - | chr7_4:34252513-34252532 | None:intergenic | 20.0% |
| !! | TCAAAATGATATAATTGATG+TGG | + | chr7_4:34253509-34253528 | Msa1150640:CDS | 20.0% |
| ! | TACAGATTTCATTGAATCTT+TGG | + | chr7_4:34250911-34250930 | Msa1150640:CDS | 25.0% |
| !! | TTATACTTTTGTATATCAGC+AGG | - | chr7_4:34251437-34251456 | None:intergenic | 25.0% |
| ! | TTTATCATTTGAAGGTTGTT+TGG | - | chr7_4:34251683-34251702 | None:intergenic | 25.0% |
| ! | AAACAACCTTCAAATGATAA+AGG | + | chr7_4:34251682-34251701 | Msa1150640:CDS | 25.0% |
| ! | AACAACCTTCAAATGATAAA+GGG | + | chr7_4:34251683-34251702 | Msa1150640:CDS | 25.0% |
| ! | AAAACAAGTACAAAGATCAA+AGG | + | chr7_4:34251731-34251750 | Msa1150640:CDS | 25.0% |
| ! | TTCCTTACCAAATACTTTAT+TGG | + | chr7_4:34252186-34252205 | Msa1150640:CDS | 25.0% |
| !! | AACCAATAAAGTATTTGGTA+AGG | - | chr7_4:34252191-34252210 | None:intergenic | 25.0% |
| !! | TCCAAAATTTTGTCTTTTTC+AGG | + | chr7_4:34252282-34252301 | Msa1150640:CDS | 25.0% |
| !! | TCCTGAAAAAGACAAAATTT+TGG | - | chr7_4:34252286-34252305 | None:intergenic | 25.0% |
| !!! | TAACCATATTGATTTTTCCT+TGG | - | chr7_4:34252416-34252435 | None:intergenic | 25.0% |
| ! | AGGAAAAATCAATATGGTTA+TGG | + | chr7_4:34252416-34252435 | Msa1150640:intron | 25.0% |
| ! | GAATCACAATTGAAAATTGA+TGG | - | chr7_4:34252514-34252533 | None:intergenic | 25.0% |
| !! | AGTTAATTGAAAAAGGTACA+CGG | - | chr7_4:34252558-34252577 | None:intergenic | 25.0% |
| !!! | TTCTTTGGTGTTTATGTAAA+TGG | - | chr7_4:34253143-34253162 | None:intergenic | 25.0% |
| ! | AGTAGTAATATTCACATTCT+AGG | - | chr7_4:34253284-34253303 | None:intergenic | 25.0% |
| GAATGTTCATTTGTGGTTAT+GGG | - | chr7_4:34250993-34251012 | None:intergenic | 30.0% | |
| ! | AGGTTGGTTAATCAATTCAA+TGG | + | chr7_4:34251187-34251206 | Msa1150640:CDS | 30.0% |
| GCCTTGAAGAAACAAATAAA+CGG | + | chr7_4:34251314-34251333 | Msa1150640:CDS | 30.0% | |
| TCTTACTACAATAATCTCCA+AGG | + | chr7_4:34251365-34251384 | Msa1150640:CDS | 30.0% | |
| TCAGCAAATACACAAAATGA+AGG | + | chr7_4:34251962-34251981 | Msa1150640:CDS | 30.0% | |
| ! | CATTTTCGTAAAACGTCATA+TGG | - | chr7_4:34252063-34252082 | None:intergenic | 30.0% |
| ACTAGCATTATCAATGCTAA+TGG | + | chr7_4:34252112-34252131 | Msa1150640:CDS | 30.0% | |
| AGTATTTGGTAAGGAAATTG+AGG | - | chr7_4:34252182-34252201 | None:intergenic | 30.0% | |
| ! | GATGGAACCAATAAAGTATT+TGG | - | chr7_4:34252196-34252215 | None:intergenic | 30.0% |
| TGATATGAGTTTAGTTGAGA+GGG | - | chr7_4:34252218-34252237 | None:intergenic | 30.0% | |
| TCAACTAAACTCATATCAGT+AGG | + | chr7_4:34252220-34252239 | Msa1150640:CDS | 30.0% | |
| GAACCAAGGAAAAATCAATA+TGG | + | chr7_4:34252410-34252429 | Msa1150640:intron | 30.0% | |
| ! | TTGCTTCCAAAACTATTTTC+AGG | + | chr7_4:34252481-34252500 | Msa1150640:intron | 30.0% |
| ! | TCTAAGCCTGAAAATAGTTT+TGG | - | chr7_4:34252490-34252509 | None:intergenic | 30.0% |
| ! | TTTGGTTCATACAGATGTTT+GGG | + | chr7_4:34252603-34252622 | Msa1150640:intron | 30.0% |
| AGGATTCTTAGATCAGATAA+TGG | + | chr7_4:34252790-34252809 | Msa1150640:intron | 30.0% | |
| GGATTCTTAGATCAGATAAT+GGG | + | chr7_4:34252791-34252810 | Msa1150640:intron | 30.0% | |
| GATTCTTAGATCAGATAATG+GGG | + | chr7_4:34252792-34252811 | Msa1150640:intron | 30.0% | |
| ! | ATTCTTAGATCAGATAATGG+GGG | + | chr7_4:34252793-34252812 | Msa1150640:intron | 30.0% |
| !! | TGGTTTGCTAAAGATTGTAA+AGG | - | chr7_4:34253060-34253079 | None:intergenic | 30.0% |
| AATGATGCTAGTACTAATGA+AGG | + | chr7_4:34253408-34253427 | Msa1150640:intron | 30.0% | |
| AATGATATAATTGATGTGGC+TGG | + | chr7_4:34253513-34253532 | Msa1150640:CDS | 30.0% | |
| GATGTTTACGACGTTAATAA+TGG | + | chr7_4:34253540-34253559 | Msa1150640:CDS | 30.0% | |
| ! | GTTAATAATGGAGCTATTGA+TGG | + | chr7_4:34253552-34253571 | Msa1150640:CDS | 30.0% |
| !!! | TTTGATTCTGGTTTTGGGTT+TGG | - | chr7_4:34250968-34250987 | None:intergenic | 35.0% |
| !!! | GGGTATTTGATTCTGGTTTT+GGG | - | chr7_4:34250973-34250992 | None:intergenic | 35.0% |
| !!! | TGGGTATTTGATTCTGGTTT+TGG | - | chr7_4:34250974-34250993 | None:intergenic | 35.0% |
| TGGTTATGGGTATTTGATTC+TGG | - | chr7_4:34250980-34250999 | None:intergenic | 35.0% | |
| GGAATGTTCATTTGTGGTTA+TGG | - | chr7_4:34250994-34251013 | None:intergenic | 35.0% | |
| TTTGATACCAATTTGTGCAG+CGG | - | chr7_4:34251015-34251034 | None:intergenic | 35.0% | |
| CAAATTGGTATCAAACTCGA+TGG | + | chr7_4:34251020-34251039 | Msa1150640:CDS | 35.0% | |
| ATGGTACCAACTATGCTTTA+TGG | + | chr7_4:34251039-34251058 | Msa1150640:CDS | 35.0% | |
| TTGTGACCATAAAGCATAGT+TGG | - | chr7_4:34251048-34251067 | None:intergenic | 35.0% | |
| TATCTCAGGAAAAGACAAGT+TGG | + | chr7_4:34251082-34251101 | Msa1150640:CDS | 35.0% | |
| ATCTCAGGAAAAGACAAGTT+GGG | + | chr7_4:34251083-34251102 | Msa1150640:CDS | 35.0% | |
| ! | CATTTTCTGTTCTCCATCTT+CGG | - | chr7_4:34251157-34251176 | None:intergenic | 35.0% |
| ACAGAAAATGCCATAGTCAA+AGG | + | chr7_4:34251167-34251186 | Msa1150640:CDS | 35.0% | |
| AAAATGCCATAGTCAAAGGT+TGG | + | chr7_4:34251171-34251190 | Msa1150640:CDS | 35.0% | |
| GATTAACCAACCTTTGACTA+TGG | - | chr7_4:34251180-34251199 | None:intergenic | 35.0% | |
| ! | GCCGTTTATTTGTTTCTTCA+AGG | - | chr7_4:34251318-34251337 | None:intergenic | 35.0% |
| ACAATAATCTCCAAGGTCTA+TGG | + | chr7_4:34251372-34251391 | Msa1150640:CDS | 35.0% | |
| ! | TTTTAGACGTCCAAATCCAA+TGG | + | chr7_4:34251406-34251425 | Msa1150640:CDS | 35.0% |
| AGAGTGTATACTTTCCTTGA+TGG | + | chr7_4:34251476-34251495 | Msa1150640:CDS | 35.0% | |
| GAGTGTATACTTTCCTTGAT+GGG | + | chr7_4:34251477-34251496 | Msa1150640:CDS | 35.0% | |
| ! | CATAAGCTTGTTCAACAGTT+GGG | - | chr7_4:34251556-34251575 | None:intergenic | 35.0% |
| TTATGACAACCAAAGGAGTT+AGG | + | chr7_4:34251645-34251664 | Msa1150640:CDS | 35.0% | |
| TATGACAACCAAAGGAGTTA+GGG | + | chr7_4:34251646-34251665 | Msa1150640:CDS | 35.0% | |
| AACCTTCAAATGATAAAGGG+AGG | + | chr7_4:34251686-34251705 | Msa1150640:CDS | 35.0% | |
| ! | GTTTTACCTCCATTTGAAGA+TGG | - | chr7_4:34251716-34251735 | None:intergenic | 35.0% |
| ATCAAAGGTCAAGCAATTGA+TGG | + | chr7_4:34251746-34251765 | Msa1150640:CDS | 35.0% | |
| TTAAACTCATTCCACCATTC+TGG | - | chr7_4:34251839-34251858 | None:intergenic | 35.0% | |
| TCATATGACAACAGGTACAA+TGG | + | chr7_4:34252010-34252029 | Msa1150640:CDS | 35.0% | |
| !! | TTGATAATGCTAGTCTGTCT+CGG | - | chr7_4:34252106-34252125 | None:intergenic | 35.0% |
| GAGTTAAATACCCTGTTAGT+GGG | + | chr7_4:34252134-34252153 | Msa1150640:CDS | 35.0% | |
| AGTTAAATACCCTGTTAGTG+GGG | + | chr7_4:34252135-34252154 | Msa1150640:CDS | 35.0% | |
| CTGATATGAGTTTAGTTGAG+AGG | - | chr7_4:34252219-34252238 | None:intergenic | 35.0% | |
| ! | AAGTAGTACTCCTTTTGCTT+TGG | + | chr7_4:34252585-34252604 | Msa1150640:intron | 35.0% |
| TCTGTATGAACCAAAGCAAA+AGG | - | chr7_4:34252598-34252617 | None:intergenic | 35.0% | |
| ! | CTTTGGTTCATACAGATGTT+TGG | + | chr7_4:34252602-34252621 | Msa1150640:intron | 35.0% |
| TTGGTTCATACAGATGTTTG+GGG | + | chr7_4:34252604-34252623 | Msa1150640:intron | 35.0% | |
| TTCCCTGATGCATTGTTAAT+GGG | - | chr7_4:34252637-34252656 | None:intergenic | 35.0% | |
| ATTCCCTGATGCATTGTTAA+TGG | - | chr7_4:34252638-34252657 | None:intergenic | 35.0% | |
| !! | TGGCAGTCTCTAAAATATGT+CGG | - | chr7_4:34252927-34252946 | None:intergenic | 35.0% |
| ! | TACTTTGGTTTCAATCAGCA+AGG | - | chr7_4:34252953-34252972 | None:intergenic | 35.0% |
| ! | CAAAGTACCCAACAAACATT+GGG | + | chr7_4:34252966-34252985 | Msa1150640:intron | 35.0% |
| !!! | AGTTTTGAACTCCAATACCT+TGG | - | chr7_4:34253037-34253056 | None:intergenic | 35.0% |
| TCCCAAAAACACACATCTTA+CGG | - | chr7_4:34253184-34253203 | None:intergenic | 35.0% | |
| ! | TGTAATAGCATTTGGTGGTT+GGG | - | chr7_4:34253242-34253261 | None:intergenic | 35.0% |
| CATTGTGGTGTAATAGCATT+TGG | - | chr7_4:34253250-34253269 | None:intergenic | 35.0% | |
| CAAATGCTATTACACCACAA+TGG | + | chr7_4:34253248-34253267 | Msa1150640:intron | 35.0% | |
| TGTCAAGAAACTAAGGATGT+TGG | + | chr7_4:34253369-34253388 | Msa1150640:intron | 35.0% | |
| ATGCTAGTACTAATGAAGGT+GGG | + | chr7_4:34253412-34253431 | Msa1150640:intron | 35.0% | |
| TAATATTGAGCATGATGCCT+TGG | + | chr7_4:34253449-34253468 | Msa1150640:CDS | 35.0% | |
| ! | TTATCACCAGCTAGTTTAGT+AGG | - | chr7_4:34253651-34253670 | None:intergenic | 35.0% |
| CTAGTTATCAGTTACCATAC+AGG | + | chr7_4:34253691-34253710 | Msa1150640:CDS | 35.0% | |
| AGTTACCATACAGGTGTAAT+AGG | + | chr7_4:34253700-34253719 | Msa1150640:CDS | 35.0% | |
| GTTACCATACAGGTGTAATA+GGG | + | chr7_4:34253701-34253720 | Msa1150640:CDS | 35.0% | |
| TTACCATACAGGTGTAATAG+GGG | + | chr7_4:34253702-34253721 | Msa1150640:CDS | 35.0% | |
| !!! | TTGGTTTTGGGTCAGAACTT+GGG | - | chr7_4:34250949-34250968 | None:intergenic | 40.0% |
| !!! | TTTGGTTTTGGGTCAGAACT+TGG | - | chr7_4:34250950-34250969 | None:intergenic | 40.0% |
| !!! | CTGGTTTTGGGTTTGGTTTT+GGG | - | chr7_4:34250961-34250980 | None:intergenic | 40.0% |
| !!! | TCTGGTTTTGGGTTTGGTTT+TGG | - | chr7_4:34250962-34250981 | None:intergenic | 40.0% |
| CTATGCTTTATGGTCACAAG+TGG | + | chr7_4:34251049-34251068 | Msa1150640:CDS | 40.0% | |
| GTGGTTGAGATGTATATCTC+AGG | + | chr7_4:34251068-34251087 | Msa1150640:CDS | 40.0% | |
| TCTCAGGAAAAGACAAGTTG+GGG | + | chr7_4:34251084-34251103 | Msa1150640:CDS | 40.0% | |
| ! | TCGTTTTCCAACAGCAAAAC+AGG | + | chr7_4:34251235-34251254 | Msa1150640:CDS | 40.0% |
| TTCCAACAGCAAAACAGGTT+TGG | + | chr7_4:34251240-34251259 | Msa1150640:CDS | 40.0% | |
| TCCAACAGCAAAACAGGTTT+GGG | + | chr7_4:34251241-34251260 | Msa1150640:CDS | 40.0% | |
| ! | ACAGGTTTGGGATTCAATTG+CGG | + | chr7_4:34251253-34251272 | Msa1150640:CDS | 40.0% |
| ATTGCGGTAACCTACTTTGA+TGG | + | chr7_4:34251269-34251288 | Msa1150640:CDS | 40.0% | |
| AGTGTCAGATCCATCAAAGT+AGG | - | chr7_4:34251282-34251301 | None:intergenic | 40.0% | |
| ATAAACGGCATGAAACAAGC+TGG | + | chr7_4:34251329-34251348 | Msa1150640:CDS | 40.0% | |
| ATATCAGCAGGACAATCCAT+TGG | - | chr7_4:34251425-34251444 | None:intergenic | 40.0% | |
| TTGGGAATGGTTGAATCTGA+AGG | - | chr7_4:34251538-34251557 | None:intergenic | 40.0% | |
| ! | GCATAAGCTTGTTCAACAGT+TGG | - | chr7_4:34251557-34251576 | None:intergenic | 40.0% |
| TCAGCAGTTATGACAACCAA+AGG | + | chr7_4:34251638-34251657 | Msa1150640:CDS | 40.0% | |
| ATGACAACCAAAGGAGTTAG+GGG | + | chr7_4:34251647-34251666 | Msa1150640:CDS | 40.0% | |
| TTGTAATCCCCTAACTCCTT+TGG | - | chr7_4:34251657-34251676 | None:intergenic | 40.0% | |
| CTCCTCCCTTTATCATTTGA+AGG | - | chr7_4:34251691-34251710 | None:intergenic | 40.0% | |
| AAAGGTCAAGCAATTGATGG+TGG | + | chr7_4:34251749-34251768 | Msa1150640:CDS | 40.0% | |
| !! | GTGCTTTTTGTTTCCACAGT+GGG | - | chr7_4:34251783-34251802 | None:intergenic | 40.0% |
| !! | TGTGCTTTTTGTTTCCACAG+TGG | - | chr7_4:34251784-34251803 | None:intergenic | 40.0% |
| AAGAAACAGAAAGAAACCGC+AGG | + | chr7_4:34251863-34251882 | Msa1150640:CDS | 40.0% | |
| TGCGAAACTAGAGAAAGTTG+TGG | - | chr7_4:34251923-34251942 | None:intergenic | 40.0% | |
| ! | ACAACTTTCTCTAGTTTCGC+AGG | + | chr7_4:34251922-34251941 | Msa1150640:CDS | 40.0% |
| TCCTCACTTCATATGACAAC+AGG | + | chr7_4:34252002-34252021 | Msa1150640:CDS | 40.0% | |
| ACCTGTTGTCATATGAAGTG+AGG | - | chr7_4:34252006-34252025 | None:intergenic | 40.0% | |
| ATGACAACAGGTACAATGGT+TGG | + | chr7_4:34252014-34252033 | Msa1150640:CDS | 40.0% | |
| !! | AATGGTTGGATAGTGGATTC+AGG | + | chr7_4:34252028-34252047 | Msa1150640:CDS | 40.0% |
| !! | ATGGTTGGATAGTGGATTCA+GGG | + | chr7_4:34252029-34252048 | Msa1150640:CDS | 40.0% |
| ! | TCGGTTTAGTCTTTGATGCA+AGG | - | chr7_4:34252087-34252106 | None:intergenic | 40.0% |
| GGAGTTAAATACCCTGTTAG+TGG | + | chr7_4:34252133-34252152 | Msa1150640:CDS | 40.0% | |
| ATGAGTTTAGTTGAGAGGGA+TGG | - | chr7_4:34252214-34252233 | None:intergenic | 40.0% | |
| TGTTTCATGTAGCCAAACGA+AGG | - | chr7_4:34252460-34252479 | None:intergenic | 40.0% | |
| GATGCATTGTTAATGGGAGA+TGG | - | chr7_4:34252631-34252650 | None:intergenic | 40.0% | |
| TCTCCCATTAACAATGCATC+AGG | + | chr7_4:34252631-34252650 | Msa1150640:intron | 40.0% | |
| CTCCCATTAACAATGCATCA+GGG | + | chr7_4:34252632-34252651 | Msa1150640:intron | 40.0% | |
| ATGATTGTACTCGCATGACT+TGG | + | chr7_4:34252680-34252699 | Msa1150640:intron | 40.0% | |
| ACCAGTTCTCAGCAAATGTT+AGG | + | chr7_4:34252770-34252789 | Msa1150640:intron | 40.0% | |
| ! | TCCTAACATTTGCTGAGAAC+TGG | - | chr7_4:34252774-34252793 | None:intergenic | 40.0% |
| CAAACTTACTTCCAAACCCA+TGG | + | chr7_4:34252838-34252857 | Msa1150640:intron | 40.0% | |
| GGTTTCATGTATAAGGCCAT+GGG | - | chr7_4:34252857-34252876 | None:intergenic | 40.0% | |
| AGGTTTCATGTATAAGGCCA+TGG | - | chr7_4:34252858-34252877 | None:intergenic | 40.0% | |
| GGCATGAGGTTTCATGTATA+AGG | - | chr7_4:34252864-34252883 | None:intergenic | 40.0% | |
| ! | CATTTTGTTGCGGAGTATGA+GGG | - | chr7_4:34252885-34252904 | None:intergenic | 40.0% |
| CTCATACTCCGCAACAAAAT+GGG | + | chr7_4:34252884-34252903 | Msa1150640:intron | 40.0% | |
| TCATACTCCGCAACAAAATG+GGG | + | chr7_4:34252885-34252904 | Msa1150640:intron | 40.0% | |
| ! | CCAATGTTTGTTGGGTACTT+TGG | - | chr7_4:34252968-34252987 | None:intergenic | 40.0% |
| ! | CCAAAGTACCCAACAAACAT+TGG | + | chr7_4:34252965-34252984 | Msa1150640:intron | 40.0% |
| GCATCTTCCCAATGTTTGTT+GGG | - | chr7_4:34252976-34252995 | None:intergenic | 40.0% | |
| TGCATCTTCCCAATGTTTGT+TGG | - | chr7_4:34252977-34252996 | None:intergenic | 40.0% | |
| CCTTGGATGGCATTCTATTT+AGG | - | chr7_4:34253020-34253039 | None:intergenic | 40.0% | |
| CCTAAATAGAATGCCATCCA+AGG | + | chr7_4:34253017-34253036 | Msa1150640:intron | 40.0% | |
| TAGAATGCCATCCAAGGTAT+TGG | + | chr7_4:34253023-34253042 | Msa1150640:intron | 40.0% | |
| TTGAACTCCAATACCTTGGA+TGG | - | chr7_4:34253033-34253052 | None:intergenic | 40.0% | |
| AGCTAGAAGGCAATGTAAAG+TGG | - | chr7_4:34253080-34253099 | None:intergenic | 40.0% | |
| ! | TGCCGTAAGATGTGTGTTTT+TGG | + | chr7_4:34253179-34253198 | Msa1150640:intron | 40.0% |
| ! | GCCGTAAGATGTGTGTTTTT+GGG | + | chr7_4:34253180-34253199 | Msa1150640:intron | 40.0% |
| GGATATGCCACTAACACAAA+AGG | + | chr7_4:34253201-34253220 | Msa1150640:intron | 40.0% | |
| CCACTAACACAAAAGGCTAT+CGG | + | chr7_4:34253208-34253227 | Msa1150640:intron | 40.0% | |
| ! | GTGTAATAGCATTTGGTGGT+TGG | - | chr7_4:34253243-34253262 | None:intergenic | 40.0% |
| TGTGGTGTAATAGCATTTGG+TGG | - | chr7_4:34253247-34253266 | None:intergenic | 40.0% | |
| TAGGAAAGTTGCATCCATTG+TGG | - | chr7_4:34253265-34253284 | None:intergenic | 40.0% | |
| !! | AAGATGAGAAGTGATGGGTA+AGG | - | chr7_4:34253310-34253329 | None:intergenic | 40.0% |
| TCCTGAAGATGAGAAGTGAT+GGG | - | chr7_4:34253315-34253334 | None:intergenic | 40.0% | |
| GTGGGATTGTCAAGAAACTA+AGG | + | chr7_4:34253362-34253381 | Msa1150640:intron | 40.0% | |
| GATGCTAGTACTAATGAAGG+TGG | + | chr7_4:34253411-34253430 | Msa1150640:intron | 40.0% | |
| GAAAGCTACATCGTTATCCT+TGG | - | chr7_4:34253484-34253503 | None:intergenic | 40.0% | |
| GTTTAGTAGGACATACCTCA+TGG | - | chr7_4:34253638-34253657 | None:intergenic | 40.0% | |
| GTATGTCCTACTAAACTAGC+TGG | + | chr7_4:34253642-34253661 | Msa1150640:CDS | 40.0% | |
| TTACCCCTATTACACCTGTA+TGG | - | chr7_4:34253708-34253727 | None:intergenic | 40.0% | |
| TGCAGCGGAATGTTCATTTG+TGG | - | chr7_4:34251000-34251019 | None:intergenic | 45.0% | |
| GAACATTCCGCTGCACAAAT+TGG | + | chr7_4:34251005-34251024 | Msa1150640:CDS | 45.0% | |
| ! | GACAAGTTGGGGTACATCAA+TGG | + | chr7_4:34251095-34251114 | Msa1150640:CDS | 45.0% |
| AATGGAGATATTCCCCAACC+TGG | + | chr7_4:34251113-34251132 | Msa1150640:CDS | 45.0% | |
| GTTCTCCATCTTCGGAAAGT+GGG | - | chr7_4:34251149-34251168 | None:intergenic | 45.0% | |
| TGTTCTCCATCTTCGGAAAG+TGG | - | chr7_4:34251150-34251169 | None:intergenic | 45.0% | |
| !! | TCCCAAACCTGTTTTGCTGT+TGG | - | chr7_4:34251245-34251264 | None:intergenic | 45.0% |
| CAATTTCTCGCCATAGACCT+TGG | - | chr7_4:34251385-34251404 | None:intergenic | 45.0% | |
| GCAGGACAATCCATTGGATT+TGG | - | chr7_4:34251419-34251438 | None:intergenic | 45.0% | |
| GCTTGTTCAACAGTTGGGAA+TGG | - | chr7_4:34251551-34251570 | None:intergenic | 45.0% | |
| GGAGGAGATCCATCTTCAAA+TGG | + | chr7_4:34251704-34251723 | Msa1150640:CDS | 45.0% | |
| GGAGATCCATCTTCAAATGG+AGG | + | chr7_4:34251707-34251726 | Msa1150640:CDS | 45.0% | |
| !! | GTCAAGCAATTGATGGTGGT+GGG | + | chr7_4:34251753-34251772 | Msa1150640:CDS | 45.0% |
| ACACATGCTTCAAGCTGCAT+GGG | + | chr7_4:34251810-34251829 | Msa1150640:CDS | 45.0% | |
| AAACAGAAAGAAACCGCAGG+TGG | + | chr7_4:34251866-34251885 | Msa1150640:CDS | 45.0% | |
| CAGGTACAATGGTTGGATAG+TGG | + | chr7_4:34252021-34252040 | Msa1150640:CDS | 45.0% | |
| !! | TGGTTGGATAGTGGATTCAG+GGG | + | chr7_4:34252030-34252049 | Msa1150640:CDS | 45.0% |
| !! | TTTTCAGGACATCCTCACCA+AGG | + | chr7_4:34252297-34252316 | Msa1150640:CDS | 45.0% |
| ATCCTCACCAAGGAGATCAT+TGG | + | chr7_4:34252307-34252326 | Msa1150640:CDS | 45.0% | |
| TCCTCACCAAGGAGATCATT+GGG | + | chr7_4:34252308-34252327 | Msa1150640:CDS | 45.0% | |
| CAAACGAAGGATGTCCTAGA+CGG | - | chr7_4:34252447-34252466 | None:intergenic | 45.0% | |
| ACAATGCATCAGGGAATCGT+TGG | + | chr7_4:34252641-34252660 | Msa1150640:intron | 45.0% | |
| CATGTATAAGGCCATGGGTT+TGG | - | chr7_4:34252852-34252871 | None:intergenic | 45.0% | |
| ! | CCATTTTGTTGCGGAGTATG+AGG | - | chr7_4:34252886-34252905 | None:intergenic | 45.0% |
| CCTCATACTCCGCAACAAAA+TGG | + | chr7_4:34252883-34252902 | Msa1150640:intron | 45.0% | |
| ! | TCAGCTACCCCATTTTGTTG+CGG | - | chr7_4:34252895-34252914 | None:intergenic | 45.0% |
| ACAACACATCCAAACACTCG+AGG | - | chr7_4:34253114-34253133 | None:intergenic | 45.0% | |
| !! | ACGGGTCAAGTTTGGTTCTT+TGG | - | chr7_4:34253158-34253177 | None:intergenic | 45.0% |
| AACACACATCTTACGGCACA+CGG | - | chr7_4:34253177-34253196 | None:intergenic | 45.0% | |
| ! | CCGATAGCCTTTTGTGTTAG+TGG | - | chr7_4:34253211-34253230 | None:intergenic | 45.0% |
| ACCCATCACTTCTCATCTTC+AGG | + | chr7_4:34253311-34253330 | Msa1150640:intron | 45.0% | |
| CTCCTGAAGATGAGAAGTGA+TGG | - | chr7_4:34253316-34253335 | None:intergenic | 45.0% | |
| CATCACTTCTCATCTTCAGG+AGG | + | chr7_4:34253314-34253333 | Msa1150640:intron | 45.0% | |
| TCTCATCTTCAGGAGGAGAT+AGG | + | chr7_4:34253321-34253340 | Msa1150640:intron | 45.0% | |
| CTCATCTTCAGGAGGAGATA+GGG | + | chr7_4:34253322-34253341 | Msa1150640:intron | 45.0% | |
| TAGGGAGTGAAGATCTGAAG+TGG | + | chr7_4:34253340-34253359 | Msa1150640:intron | 45.0% | |
| ! | GAGTGAAGATCTGAAGTGGT+GGG | + | chr7_4:34253344-34253363 | Msa1150640:intron | 45.0% |
| ACTAATGAAGGTGGGAGTGA+TGG | + | chr7_4:34253420-34253439 | Msa1150640:intron | 45.0% | |
| TATTGAGCATGATGCCTTGG+TGG | + | chr7_4:34253452-34253471 | Msa1150640:CDS | 45.0% | |
| ATCCTTGGTTACATCCACCA+AGG | - | chr7_4:34253469-34253488 | None:intergenic | 45.0% | |
| ACATACCTCATGGACATCCT+CGG | - | chr7_4:34253628-34253647 | None:intergenic | 45.0% | |
| TGTCTGGTGAATACCGATCA+GGG | - | chr7_4:34253734-34253753 | None:intergenic | 45.0% | |
| ATGTCTGGTGAATACCGATC+AGG | - | chr7_4:34253735-34253754 | None:intergenic | 45.0% | |
| GATCGGTATTCACCAGACAT+TGG | + | chr7_4:34253735-34253754 | Msa1150640:CDS | 45.0% | |
| TTCACCAGACATTGGAGAGA+AGG | + | chr7_4:34253743-34253762 | Msa1150640:CDS | 45.0% | |
| TCACCAGACATTGGAGAGAA+GGG | + | chr7_4:34253744-34253763 | Msa1150640:CDS | 45.0% | |
| GTTCACGACATCATCGTCGT+CGG | - | chr7_4:34250865-34250884 | None:intergenic | 50.0% | |
| CAGATCCCACTTTCCGAAGA+TGG | + | chr7_4:34251141-34251160 | Msa1150640:CDS | 50.0% | |
| AACGGCATGAAACAAGCTGG+AGG | + | chr7_4:34251332-34251351 | Msa1150640:CDS | 50.0% | |
| !! | TCCTTGATGGGCTAGATGAC+AGG | + | chr7_4:34251489-34251508 | Msa1150640:CDS | 50.0% |
| TTATGCGCATGTTCGCAGAG+AGG | + | chr7_4:34251571-34251590 | Msa1150640:CDS | 50.0% | |
| CGACAAACAGTGATGCTAGC+AGG | + | chr7_4:34251599-34251618 | Msa1150640:CDS | 50.0% | |
| !! | GGTCAAGCAATTGATGGTGG+TGG | + | chr7_4:34251752-34251771 | Msa1150640:CDS | 50.0% |
| CAGCTTGAAGCATGTGTCAC+GGG | - | chr7_4:34251807-34251826 | None:intergenic | 50.0% | |
| GCAGCTTGAAGCATGTGTCA+CGG | - | chr7_4:34251808-34251827 | None:intergenic | 50.0% | |
| GACACATGCTTCAAGCTGCA+TGG | + | chr7_4:34251809-34251828 | Msa1150640:CDS | 50.0% | |
| AGCTGCATGGGTATCCAGAA+TGG | + | chr7_4:34251822-34251841 | Msa1150640:CDS | 50.0% | |
| TGCATGGGTATCCAGAATGG+TGG | + | chr7_4:34251825-34251844 | Msa1150640:CDS | 50.0% | |
| AAATACCCTGTTAGTGGGGC+TGG | + | chr7_4:34252139-34252158 | Msa1150640:CDS | 50.0% | |
| ATTGGGCGTGGTACTAAGAG+AGG | + | chr7_4:34252325-34252344 | Msa1150640:CDS | 50.0% | |
| TTGGGCGTGGTACTAAGAGA+GGG | + | chr7_4:34252326-34252345 | Msa1150640:CDS | 50.0% | |
| GTTCACCATGTGCAACACTC+AGG | + | chr7_4:34252385-34252404 | Msa1150640:intron | 50.0% | |
| ! | TTCCACCTGAGTGTTGCACA+TGG | - | chr7_4:34252393-34252412 | None:intergenic | 50.0% |
| ! | CGTCTAGGACATCCTTCGTT+TGG | + | chr7_4:34252445-34252464 | Msa1150640:intron | 50.0% |
| GGTTTCAATCAGCAAGGCTC+TGG | - | chr7_4:34252947-34252966 | None:intergenic | 50.0% | |
| GGAGGAATGAGAGAGCTAGA+AGG | - | chr7_4:34253093-34253112 | None:intergenic | 50.0% | |
| CTCATTCCTCCTCGAGTGTT+TGG | + | chr7_4:34253102-34253121 | Msa1150640:intron | 50.0% | |
| ACACATCCAAACACTCGAGG+AGG | - | chr7_4:34253111-34253130 | None:intergenic | 50.0% | |
| ACACACATCTTACGGCACAC+GGG | - | chr7_4:34253176-34253195 | None:intergenic | 50.0% | |
| ! | GGAGTGAAGATCTGAAGTGG+TGG | + | chr7_4:34253343-34253362 | Msa1150640:intron | 50.0% |
| ! | TGCCTTGGTGGATGTAACCA+AGG | + | chr7_4:34253464-34253483 | Msa1150640:CDS | 50.0% |
| CATACCTCATGGACATCCTC+GGG | - | chr7_4:34253627-34253646 | None:intergenic | 50.0% | |
| ATAGGGGTAAACCCCCTGAT+CGG | + | chr7_4:34253718-34253737 | Msa1150640:CDS | 50.0% | |
| TCTGGTGAATACCGATCAGG+GGG | - | chr7_4:34253732-34253751 | None:intergenic | 50.0% | |
| GTCTGGTGAATACCGATCAG+GGG | - | chr7_4:34253733-34253752 | None:intergenic | 50.0% | |
| AAAGTGGGATCTGCTGGTCC+AGG | - | chr7_4:34251134-34251153 | None:intergenic | 55.0% | |
| CTTCGGAAAGTGGGATCTGC+TGG | - | chr7_4:34251140-34251159 | None:intergenic | 55.0% | |
| GCCTGTCATCTAGCCCATCA+AGG | - | chr7_4:34251493-34251512 | None:intergenic | 55.0% | |
| GAAAGAAACCGCAGGTGGCT+CGG | + | chr7_4:34251871-34251890 | Msa1150640:CDS | 55.0% | |
| AAAGAAACCGCAGGTGGCTC+GGG | + | chr7_4:34251872-34251891 | Msa1150640:CDS | 55.0% | |
| ! | TTGTGGTTCTGCACCAGCGA+AGG | - | chr7_4:34251906-34251925 | None:intergenic | 55.0% |
| CAGTTCCAGCCCCACTAACA+GGG | - | chr7_4:34252147-34252166 | None:intergenic | 55.0% | |
| ACAGTTCCAGCCCCACTAAC+AGG | - | chr7_4:34252148-34252167 | None:intergenic | 55.0% | |
| TGTTAGTGGGGCTGGAACTG+TGG | + | chr7_4:34252147-34252166 | Msa1150640:CDS | 55.0% | |
| GCCCAATGATCTCCTTGGTG+AGG | - | chr7_4:34252312-34252331 | None:intergenic | 55.0% | |
| ACCAAGGAGATCATTGGGCG+TGG | + | chr7_4:34252313-34252332 | Msa1150640:CDS | 55.0% | |
| ACCACGCCCAATGATCTCCT+TGG | - | chr7_4:34252317-34252336 | None:intergenic | 55.0% | |
| TGGGCGTGGTACTAAGAGAG+GGG | + | chr7_4:34252327-34252346 | Msa1150640:CDS | 55.0% | |
| GAGAGGGGGTCTCTACTACA+TGG | + | chr7_4:34252342-34252361 | Msa1150640:intron | 55.0% | |
| CACCATGTGCAACACTCAGG+TGG | + | chr7_4:34252388-34252407 | Msa1150640:intron | 55.0% | |
| GCAACACTCAGGTGGAACCA+AGG | + | chr7_4:34252396-34252415 | Msa1150640:intron | 55.0% | |
| TGGTTATGGCACTGCCGTCT+AGG | + | chr7_4:34252430-34252449 | Msa1150640:intron | 55.0% | |
| ! | TTGCGGAGTATGAGGGCATG+AGG | - | chr7_4:34252878-34252897 | None:intergenic | 55.0% |
| TACGGCACACGGGTCAAGTT+TGG | - | chr7_4:34253166-34253185 | None:intergenic | 55.0% | |
| GGATCTGCTGGTCCAGGTTG+GGG | - | chr7_4:34251128-34251147 | None:intergenic | 60.0% | |
| GGGATCTGCTGGTCCAGGTT+GGG | - | chr7_4:34251129-34251148 | None:intergenic | 60.0% | |
| TGGGATCTGCTGGTCCAGGT+TGG | - | chr7_4:34251130-34251149 | None:intergenic | 60.0% | |
| GGGCGTGGTACTAAGAGAGG+GGG | + | chr7_4:34252328-34252347 | Msa1150640:CDS | 60.0% | |
| ACGCAGCAATGACACTCCCG+AGG | + | chr7_4:34253608-34253627 | Msa1150640:CDS | 60.0% | |
| CACTCCCGAGGATGTCCATG+AGG | + | chr7_4:34253620-34253639 | Msa1150640:CDS | 60.0% | |
| TGCTGCGTGCGCACGAGAGA+GGG | - | chr7_4:34253596-34253615 | None:intergenic | 65.0% | |
| TTGCTGCGTGCGCACGAGAG+AGG | - | chr7_4:34253597-34253616 | None:intergenic | 65.0% | |
| !! | GGTGGTGGGTGCTCCCACTG+TGG | + | chr7_4:34251767-34251786 | Msa1150640:CDS | 70.0% |
| CACTCGTCCCGAGCCACCTG+CGG | - | chr7_4:34251882-34251901 | None:intergenic | 70.0% | |
| TCGGGACGAGTGGCCTTCGC+TGG | + | chr7_4:34251890-34251909 | Msa1150640:CDS | 70.0% | |
| GCTGCGTGCGCACGAGAGAG+GGG | - | chr7_4:34253595-34253614 | None:intergenic | 70.0% | |
| ! | CGCAGGTGGCTCGGGACGAG+TGG | + | chr7_4:34251880-34251899 | Msa1150640:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 34250846 | 34253767 | 34250846 | ID=Msa1150640;Name=Msa1150640 |
| chr7_4 | mRNA | 34250846 | 34253767 | 34250846 | ID=Msa1150640-mRNA-1;Parent=Msa1150640;Name=Msa1150640-mRNA-1;_AED=0.22;_eAED=0.52;_QI=0|0|0|0.5|0|0|2|0|614 |
| chr7_4 | exon | 34250846 | 34252349 | 34250846 | ID=Msa1150640-mRNA-1:exon:8157;Parent=Msa1150640-mRNA-1 |
| chr7_4 | exon | 34253430 | 34253767 | 34253430 | ID=Msa1150640-mRNA-1:exon:8158;Parent=Msa1150640-mRNA-1 |
| chr7_4 | CDS | 34250846 | 34252349 | 34250846 | ID=Msa1150640-mRNA-1:cds;Parent=Msa1150640-mRNA-1 |
| chr7_4 | CDS | 34253430 | 34253767 | 34253430 | ID=Msa1150640-mRNA-1:cds;Parent=Msa1150640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
