Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0459160 | KEH34477.1 | 83.529 | 170 | 19 | 1 | 1 | 170 | 1 | 161 | 2.21e-97 | 288 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0459160 | sp|Q9FJK3|AGL80_ARATH | 46.061 | 165 | 77 | 3 | 1 | 164 | 1 | 154 | 3.28e-33 | 122 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0459160 | A0A072UY35 | 83.529 | 170 | 19 | 1 | 1 | 170 | 1 | 161 | 1.05e-97 | 288 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0459160 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013750 | Msa0459160 | 0.815953 | 7.098063e-52 | -8.615850e-47 |
| Msa0015750 | Msa0459160 | 0.826369 | 2.817643e-54 | -8.615850e-47 |
| Msa0016570 | Msa0459160 | 0.846917 | 1.606637e-59 | -8.615850e-47 |
| Msa0016580 | Msa0459160 | 0.806617 | 7.539953e-50 | -8.615850e-47 |
| Msa0102070 | Msa0459160 | 0.849616 | 2.884948e-60 | -8.615850e-47 |
| Msa0110270 | Msa0459160 | 0.807131 | 5.872166e-50 | -8.615850e-47 |
| Msa0142220 | Msa0459160 | 0.816223 | 6.178829e-52 | -8.615850e-47 |
| Msa0145750 | Msa0459160 | 0.831193 | 1.917444e-55 | -8.615850e-47 |
| Msa0153910 | Msa0459160 | 0.829174 | 5.965474e-55 | -8.615850e-47 |
| Msa0197010 | Msa0459160 | 0.801524 | 8.647909e-49 | -8.615850e-47 |
| Msa0200000 | Msa0459160 | 0.801196 | 1.009185e-48 | -8.615850e-47 |
| Msa0227480 | Msa0459160 | 0.864943 | 8.451788e-65 | -8.615850e-47 |
| Msa0232850 | Msa0459160 | 0.831511 | 1.601254e-55 | -8.615850e-47 |
| Msa0235140 | Msa0459160 | 0.829781 | 4.247000e-55 | -8.615850e-47 |
| Msa0365500 | Msa0459160 | 0.849836 | 2.504175e-60 | -8.615850e-47 |
| Msa0366420 | Msa0459160 | 0.909125 | 8.047202e-82 | -8.615850e-47 |
| Msa0384800 | Msa0459160 | 0.825254 | 5.183085e-54 | -8.615850e-47 |
| Msa0394970 | Msa0459160 | 0.813019 | 3.163948e-51 | -8.615850e-47 |
| Msa0406120 | Msa0459160 | 0.800877 | 1.172497e-48 | -8.615850e-47 |
| Msa0407750 | Msa0459160 | 0.800472 | 1.418383e-48 | -8.615850e-47 |
| Msa0414410 | Msa0459160 | 0.949098 | 2.526942e-107 | -8.615850e-47 |
| Msa0414420 | Msa0459160 | 0.909214 | 7.291674e-82 | -8.615850e-47 |
| Msa0436780 | Msa0459160 | 0.823518 | 1.326361e-53 | -8.615850e-47 |
| Msa0436800 | Msa0459160 | 0.813461 | 2.530558e-51 | -8.615850e-47 |
| Msa0438620 | Msa0459160 | 0.834451 | 2.974273e-56 | -8.615850e-47 |
| Msa0450000 | Msa0459160 | 0.825684 | 4.097691e-54 | -8.615850e-47 |
| Msa0450570 | Msa0459160 | 0.804209 | 2.411220e-49 | -8.615850e-47 |
| Msa0452900 | Msa0459160 | 0.884644 | 1.608640e-71 | -8.615850e-47 |
| Msa0453120 | Msa0459160 | 0.822877 | 1.872381e-53 | -8.615850e-47 |
| Msa0454910 | Msa0459160 | 0.825260 | 5.165703e-54 | -8.615850e-47 |
| Msa0459160 | Msa0459170 | 0.832546 | 8.887120e-56 | -8.615850e-47 |
| Msa0459160 | Msa0479340 | 0.805240 | 1.468355e-49 | -8.615850e-47 |
| Msa0459160 | Msa0491590 | 0.820886 | 5.412757e-53 | -8.615850e-47 |
| Msa0459160 | Msa0502760 | 0.800744 | 1.248208e-48 | -8.615850e-47 |
| Msa0459160 | Msa0506190 | 0.855789 | 4.982107e-62 | -8.615850e-47 |
| Msa0459160 | Msa0506270 | 0.835402 | 1.713272e-56 | -8.615850e-47 |
| Msa0459160 | Msa0564890 | 0.884088 | 2.584207e-71 | -8.615850e-47 |
| Msa0459160 | Msa0596150 | 0.824825 | 6.542235e-54 | -8.615850e-47 |
| Msa0459160 | Msa0598780 | 0.806985 | 6.303212e-50 | -8.615850e-47 |
| Msa0459160 | Msa0604350 | 0.804104 | 2.535890e-49 | -8.615850e-47 |
| Msa0459160 | Msa0636170 | 0.830518 | 2.807887e-55 | -8.615850e-47 |
| Msa0459160 | Msa0678930 | 0.823355 | 1.448057e-53 | -8.615850e-47 |
| Msa0459160 | Msa0694370 | 0.829675 | 4.507566e-55 | -8.615850e-47 |
| Msa0459160 | Msa0726140 | 0.849508 | 3.090821e-60 | -8.615850e-47 |
| Msa0459160 | Msa0729800 | 0.827437 | 1.565382e-54 | -8.615850e-47 |
| Msa0459160 | Msa0732310 | 0.807409 | 5.126052e-50 | -8.615850e-47 |
| Msa0459160 | Msa0733290 | 0.816276 | 6.012290e-52 | -8.615850e-47 |
| Msa0459160 | Msa0743810 | 0.873577 | 1.319753e-67 | -8.615850e-47 |
| Msa0459160 | Msa0745060 | 0.879009 | 1.766737e-69 | -8.615850e-47 |
| Msa0459160 | Msa0766630 | 0.811315 | 7.446635e-51 | -8.615850e-47 |
| Msa0459160 | Msa0767720 | 0.858610 | 7.317755e-63 | -8.615850e-47 |
| Msa0459160 | Msa0783160 | 0.853725 | 1.976861e-61 | -8.615850e-47 |
| Msa0459160 | Msa0784290 | 0.820971 | 5.173921e-53 | -8.615850e-47 |
| Msa0459160 | Msa0787600 | 0.856618 | 2.847683e-62 | -8.615850e-47 |
| Msa0459160 | Msa0808010 | 0.860661 | 1.767803e-63 | -8.615850e-47 |
| Msa0459160 | Msa0808020 | 0.851468 | 8.700337e-61 | -8.615850e-47 |
| Msa0459160 | Msa0825860 | 0.875368 | 3.255400e-68 | -8.615850e-47 |
| Msa0459160 | Msa0833290 | 0.838649 | 2.537181e-57 | -8.615850e-47 |
| Msa0459160 | Msa0846210 | 0.811126 | 8.181598e-51 | -8.615850e-47 |
| Msa0459160 | Msa0846330 | 0.827431 | 1.570825e-54 | -8.615850e-47 |
| Msa0459160 | Msa0846350 | 0.829842 | 4.106017e-55 | -8.615850e-47 |
| Msa0459160 | Msa0848960 | 0.811016 | 8.643839e-51 | -8.615850e-47 |
| Msa0459160 | Msa0858980 | 0.823752 | 1.169649e-53 | -8.615850e-47 |
| Msa0459160 | Msa0865320 | 0.855613 | 5.608742e-62 | -8.615850e-47 |
| Msa0459160 | Msa0872230 | 0.801586 | 8.396371e-49 | -8.615850e-47 |
| Msa0459160 | Msa0885290 | 0.844428 | 7.605154e-59 | -8.615850e-47 |
| Msa0459160 | Msa0888370 | 0.826627 | 2.444851e-54 | -8.615850e-47 |
| Msa0459160 | Msa0888420 | 0.803278 | 3.761981e-49 | -8.615850e-47 |
| Msa0459160 | Msa0896080 | 0.825727 | 4.004104e-54 | -8.615850e-47 |
| Msa0459160 | Msa0952720 | 0.805991 | 1.021455e-49 | -8.615850e-47 |
| Msa0459160 | Msa0981370 | 0.875391 | 3.198603e-68 | -8.615850e-47 |
| Msa0459160 | Msa0989060 | 0.829428 | 5.177525e-55 | -8.615850e-47 |
| Msa0459160 | Msa1016280 | 0.858249 | 9.377626e-63 | -8.615850e-47 |
| Msa0459160 | Msa1023050 | 0.800948 | 1.134166e-48 | -8.615850e-47 |
| Msa0459160 | Msa1024240 | 0.806307 | 8.765224e-50 | -8.615850e-47 |
| Msa0459160 | Msa1025360 | 0.896193 | 4.663691e-76 | -8.615850e-47 |
| Msa0459160 | Msa1025370 | 0.887632 | 1.203170e-72 | -8.615850e-47 |
| Msa0459160 | Msa1044830 | 0.891131 | 5.257139e-74 | -8.615850e-47 |
| Msa0459160 | Msa1044840 | 0.897744 | 1.044903e-76 | -8.615850e-47 |
| Msa0459160 | Msa1060840 | 0.834130 | 3.581446e-56 | -8.615850e-47 |
| Msa0459160 | Msa1087490 | 0.800725 | 1.259762e-48 | -8.615850e-47 |
| Msa0459160 | Msa1092990 | 0.852859 | 3.500506e-61 | -8.615850e-47 |
| Msa0459160 | Msa1099970 | 0.806375 | 8.479855e-50 | -8.615850e-47 |
| Msa0459160 | Msa1100980 | 0.891012 | 5.855486e-74 | -8.615850e-47 |
| Msa0459160 | Msa1109440 | 0.857555 | 1.507584e-62 | -8.615850e-47 |
| Msa0459160 | Msa1121200 | 0.877102 | 8.225829e-69 | -8.615850e-47 |
| Msa0459160 | Msa1135740 | 0.870757 | 1.146058e-66 | -8.615850e-47 |
| Msa0459160 | Msa1146110 | 0.863154 | 3.048689e-64 | -8.615850e-47 |
| Msa0459160 | Msa1149360 | 0.818708 | 1.701990e-52 | -8.615850e-47 |
| Msa0459160 | Msa1150370 | 0.840162 | 1.026425e-57 | -8.615850e-47 |
| Msa0459160 | Msa1150640 | 0.833277 | 5.849458e-56 | -8.615850e-47 |
| Msa0459160 | Msa1173920 | 0.808046 | 3.754427e-50 | -8.615850e-47 |
| Msa0459160 | Msa1187940 | 0.843411 | 1.424993e-58 | -8.615850e-47 |
| Msa0459160 | Msa1187950 | 0.844566 | 6.983871e-59 | -8.615850e-47 |
| Msa0459160 | Msa1192640 | 0.865010 | 8.051842e-65 | -8.615850e-47 |
| Msa0459160 | Msa1246880 | 0.827947 | 1.180856e-54 | -8.615850e-47 |
| Msa0459160 | Msa1260100 | 0.802062 | 6.705834e-49 | -8.615850e-47 |
| Msa0459160 | Msa1269670 | 0.879181 | 1.535957e-69 | -8.615850e-47 |
| Msa0459160 | Msa1270230 | 0.889840 | 1.689434e-73 | -8.615850e-47 |
| Msa0459160 | Msa1270240 | 0.859520 | 3.908060e-63 | -8.615850e-47 |
| Msa0459160 | Msa1270270 | 0.833926 | 4.027042e-56 | -8.615850e-47 |
| Msa0459160 | Msa1283330 | 0.882689 | 8.440495e-71 | -8.615850e-47 |
| Msa0459160 | Msa1285930 | 0.871583 | 6.120369e-67 | -8.615850e-47 |
| Msa0459160 | Msa1287800 | 0.883065 | 6.148621e-71 | -8.615850e-47 |
| Msa0459160 | Msa1287810 | 0.891951 | 2.483710e-74 | -8.615850e-47 |
| Msa0459160 | Msa1287820 | 0.814053 | 1.873767e-51 | -8.615850e-47 |
| Msa0459160 | Msa1287830 | 0.815709 | 8.045447e-52 | -8.615850e-47 |
| Msa0459160 | Msa1289430 | 0.831481 | 1.628758e-55 | -8.615850e-47 |
| Msa0459160 | Msa1305480 | 0.810943 | 8.964669e-51 | -8.615850e-47 |
| Msa0459160 | Msa1307890 | 0.856200 | 3.778479e-62 | -8.615850e-47 |
| Msa0459160 | Msa1320300 | 0.832283 | 1.032784e-55 | -8.615850e-47 |
| Msa0459160 | Msa1340590 | 0.814066 | 1.861504e-51 | -8.615850e-47 |
| Msa0459160 | Msa1344520 | 0.812862 | 3.424271e-51 | -8.615850e-47 |
| Msa0459160 | Msa1397580 | 0.827044 | 1.944269e-54 | -8.615850e-47 |
| Msa0459160 | Msa1404000 | 0.838770 | 2.360196e-57 | -8.615850e-47 |
| Msa0459160 | Msa1408780 | 0.803407 | 3.538226e-49 | -8.615850e-47 |
| Msa0459160 | Msa1415310 | 0.840938 | 6.430909e-58 | -8.615850e-47 |
| Msa0459160 | Msa1422180 | 0.834971 | 2.200936e-56 | -8.615850e-47 |
| Msa0459160 | Msa1433120 | 0.882781 | 7.808453e-71 | -8.615850e-47 |
| Msa0459160 | Msa1451570 | 0.806405 | 8.356881e-50 | -8.615850e-47 |
| Msa0267000 | Msa0459160 | 0.885151 | 1.040923e-71 | -8.615850e-47 |
| Msa0267010 | Msa0459160 | 0.885997 | 5.014270e-72 | -8.615850e-47 |
| Msa0270520 | Msa0459160 | 0.827452 | 1.552762e-54 | -8.615850e-47 |
| Msa0306460 | Msa0459160 | 0.808693 | 2.732174e-50 | -8.615850e-47 |
| Msa0313760 | Msa0459160 | 0.856846 | 2.441248e-62 | -8.615850e-47 |
| Msa0342240 | Msa0459160 | 0.863194 | 2.961484e-64 | -8.615850e-47 |
| Msa0360510 | Msa0459160 | 0.879753 | 9.631424e-70 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0459160 | MtrunA17_Chr3g0107461 | 83.529 | 170 | 19 | 1 | 1 | 170 | 1 | 161 | 2.03e-101 | 288 |
| Msa0459160 | MtrunA17_Chr4g0031421 | 71.831 | 142 | 31 | 1 | 29 | 170 | 1 | 133 | 3.31e-69 | 206 |
| Msa0459160 | MtrunA17_Chr3g0105791 | 71.127 | 142 | 32 | 1 | 29 | 170 | 1 | 133 | 1.19e-67 | 202 |
| Msa0459160 | MtrunA17_Chr3g0107381 | 49.693 | 163 | 72 | 2 | 1 | 163 | 1 | 153 | 2.96e-50 | 160 |
| Msa0459160 | MtrunA17_Chr3g0110131 | 46.951 | 164 | 77 | 3 | 1 | 164 | 1 | 154 | 3.97e-38 | 130 |
| Msa0459160 | MtrunA17_Chr2g0283941 | 40.000 | 165 | 90 | 2 | 5 | 169 | 5 | 160 | 3.55e-36 | 125 |
| Msa0459160 | MtrunA17_Chr2g0296861 | 43.293 | 164 | 83 | 2 | 1 | 164 | 1 | 154 | 1.59e-35 | 121 |
| Msa0459160 | MtrunA17_Chr5g0432691 | 36.196 | 163 | 94 | 2 | 1 | 163 | 1 | 153 | 6.50e-33 | 114 |
| Msa0459160 | MtrunA17_Chr8g0351751 | 38.095 | 168 | 93 | 2 | 1 | 166 | 1 | 159 | 1.54e-31 | 114 |
| Msa0459160 | MtrunA17_Chr4g0014321 | 34.356 | 163 | 98 | 1 | 1 | 163 | 1 | 154 | 1.15e-30 | 111 |
| Msa0459160 | MtrunA17_Chr3g0107331 | 38.125 | 160 | 89 | 2 | 3 | 162 | 2 | 151 | 6.87e-30 | 107 |
| Msa0459160 | MtrunA17_Chr3g0106421 | 41.844 | 141 | 73 | 2 | 29 | 169 | 1 | 132 | 9.19e-30 | 108 |
| Msa0459160 | MtrunA17_Chr2g0296831 | 45.802 | 131 | 62 | 2 | 1 | 131 | 1 | 122 | 1.20e-28 | 102 |
| Msa0459160 | MtrunA17_Chr4g0014031 | 38.788 | 165 | 92 | 1 | 1 | 165 | 1 | 156 | 6.67e-28 | 103 |
| Msa0459160 | MtrunA17_Chr4g0014131 | 38.824 | 170 | 95 | 1 | 1 | 170 | 1 | 161 | 1.01e-27 | 103 |
| Msa0459160 | MtrunA17_Chr5g0420351 | 34.940 | 166 | 97 | 3 | 1 | 166 | 1 | 155 | 4.62e-26 | 97.1 |
| Msa0459160 | MtrunA17_Chr3g0106501 | 40.580 | 138 | 73 | 2 | 29 | 166 | 1 | 129 | 8.50e-26 | 96.7 |
| Msa0459160 | MtrunA17_Chr3g0107351 | 34.756 | 164 | 97 | 3 | 3 | 166 | 2 | 155 | 1.19e-25 | 96.3 |
| Msa0459160 | MtrunA17_Chr4g0014121 | 35.152 | 165 | 98 | 1 | 1 | 165 | 29 | 184 | 6.90e-25 | 95.1 |
| Msa0459160 | MtrunA17_Chr4g0013041 | 32.515 | 163 | 99 | 2 | 1 | 163 | 1 | 152 | 1.06e-24 | 95.1 |
| Msa0459160 | MtrunA17_Chr1g0188681 | 36.095 | 169 | 91 | 6 | 1 | 166 | 1 | 155 | 5.69e-24 | 91.7 |
| Msa0459160 | MtrunA17_Chr1g0197461 | 31.707 | 164 | 101 | 3 | 3 | 166 | 2 | 154 | 8.53e-24 | 91.3 |
| Msa0459160 | MtrunA17_Chr3g0107341 | 33.537 | 164 | 99 | 2 | 3 | 166 | 2 | 155 | 1.23e-23 | 91.3 |
| Msa0459160 | MtrunA17_Chr3g0107361 | 34.756 | 164 | 97 | 3 | 3 | 166 | 2 | 155 | 1.31e-23 | 90.9 |
| Msa0459160 | MtrunA17_Chr4g0012761 | 34.940 | 166 | 97 | 3 | 1 | 166 | 1 | 155 | 1.41e-21 | 85.9 |
| Msa0459160 | MtrunA17_Chr1g0188661 | 34.132 | 167 | 97 | 4 | 1 | 166 | 1 | 155 | 3.38e-21 | 84.7 |
| Msa0459160 | MtrunA17_Chr1g0197261 | 29.940 | 167 | 104 | 4 | 1 | 166 | 1 | 155 | 2.67e-20 | 82.4 |
| Msa0459160 | MtrunA17_Chr1g0197321 | 30.952 | 168 | 102 | 4 | 1 | 166 | 1 | 156 | 1.07e-19 | 80.9 |
| Msa0459160 | MtrunA17_Chr7g0218151 | 32.530 | 166 | 101 | 3 | 1 | 166 | 1 | 155 | 1.76e-19 | 80.1 |
| Msa0459160 | MtrunA17_Chr1g0188651 | 33.529 | 170 | 100 | 3 | 1 | 170 | 1 | 157 | 2.44e-19 | 79.7 |
| Msa0459160 | MtrunA17_Chr1g0193311 | 32.934 | 167 | 99 | 4 | 1 | 166 | 1 | 155 | 2.71e-19 | 79.7 |
| Msa0459160 | MtrunA17_Chr4g0008701 | 25.949 | 158 | 101 | 4 | 3 | 157 | 6 | 150 | 4.20e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0459160 | AT5G48670.1 | 46.061 | 165 | 77 | 3 | 1 | 164 | 1 | 154 | 3.33e-34 | 122 |
| Msa0459160 | AT3G05860.2 | 43.077 | 130 | 61 | 2 | 1 | 126 | 1 | 121 | 2.45e-26 | 99.8 |
| Msa0459160 | AT3G05860.3 | 43.077 | 130 | 61 | 2 | 1 | 126 | 1 | 121 | 4.22e-26 | 100 |
| Msa0459160 | AT3G05860.1 | 43.077 | 130 | 61 | 2 | 1 | 126 | 1 | 121 | 8.10e-26 | 99.8 |
| Msa0459160 | AT1G65330.1 | 37.580 | 157 | 88 | 2 | 3 | 159 | 2 | 148 | 1.41e-25 | 99.4 |
| Msa0459160 | AT1G65300.1 | 36.747 | 166 | 94 | 3 | 5 | 170 | 4 | 158 | 3.53e-25 | 98.2 |
| Msa0459160 | AT5G27810.1 | 46.939 | 98 | 43 | 1 | 29 | 126 | 1 | 89 | 2.75e-24 | 92.0 |
| Msa0459160 | AT5G26650.1 | 34.568 | 162 | 96 | 2 | 5 | 166 | 3 | 154 | 3.79e-22 | 91.7 |
| Msa0459160 | AT5G27960.1 | 32.099 | 162 | 100 | 2 | 5 | 166 | 3 | 154 | 2.17e-20 | 86.3 |
| Msa0459160 | AT1G31630.1 | 34.320 | 169 | 84 | 6 | 3 | 163 | 2 | 151 | 2.82e-20 | 86.3 |
| Msa0459160 | AT1G31640.1 | 35.119 | 168 | 86 | 5 | 3 | 164 | 2 | 152 | 1.29e-18 | 82.4 |
| Msa0459160 | AT1G22590.2 | 30.769 | 169 | 91 | 3 | 1 | 166 | 1 | 146 | 6.75e-18 | 76.6 |
| Msa0459160 | AT2G28700.1 | 30.189 | 159 | 101 | 2 | 1 | 159 | 1 | 149 | 2.82e-17 | 77.8 |
| Msa0459160 | AT5G26630.1 | 31.707 | 164 | 102 | 2 | 1 | 164 | 1 | 154 | 9.02e-17 | 74.7 |
| Msa0459160 | AT5G06500.1 | 30.128 | 156 | 90 | 4 | 1 | 156 | 1 | 137 | 1.49e-14 | 69.3 |
| Msa0459160 | AT5G26580.1 | 35.455 | 110 | 48 | 2 | 1 | 110 | 1 | 87 | 5.84e-13 | 65.9 |
| Msa0459160 | AT2G40210.1 | 31.818 | 110 | 66 | 1 | 1 | 110 | 1 | 101 | 9.93e-11 | 59.7 |
Find 40 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGGTCATTTCCTGCTTTC+TGG | 0.066665 | 3_3:-55539057 | None:intergenic |
| ATTCATACCACAGAATTTAA+TGG | 0.196701 | 3_3:+55539095 | Msa0459160:CDS |
| CAGGTTTGGCCATCAGATTC+AGG | 0.232242 | 3_3:+55538509 | Msa0459160:CDS |
| CAGGGCCGTCCCTGAGAATT+CGG | 0.351697 | 3_3:-55538914 | None:intergenic |
| AAACTTCTGAACCTGGCAAC+AGG | 0.366867 | 3_3:-55538933 | None:intergenic |
| GTTCAGAAGTTTGCCTGGAC+TGG | 0.390262 | 3_3:+55538944 | Msa0459160:CDS |
| GATGAAATTAGCACTCTTTG+CGG | 0.413383 | 3_3:+55538440 | Msa0459160:CDS |
| AGCCGAGCCTCCGAATTCTC+AGG | 0.422786 | 3_3:+55538904 | Msa0459160:CDS |
| GCCAGGTTCAGAAGTTTGCC+TGG | 0.429357 | 3_3:+55538939 | Msa0459160:CDS |
| TCAGGGACGGCCCTGTTGCC+AGG | 0.429659 | 3_3:+55538922 | Msa0459160:CDS |
| AATGAAATGATGAATGATAT+TGG | 0.442815 | 3_3:-55539075 | None:intergenic |
| TATTCTTGAGGCAAAGCATT+GGG | 0.452810 | 3_3:+55538997 | Msa0459160:CDS |
| ACAATCCTCAAGTACAGGTT+TGG | 0.465441 | 3_3:+55538495 | Msa0459160:CDS |
| AGGTTTGGCCATCAGATTCA+GGG | 0.491311 | 3_3:+55538510 | Msa0459160:CDS |
| TCCCTGAGAATTCGGAGGCT+CGG | 0.507432 | 3_3:-55538906 | None:intergenic |
| CACTATCATGGCTAGAGGTA+AGG | 0.508320 | 3_3:+55538142 | None:intergenic |
| AAGGAAGGAAACCAGAAAGC+AGG | 0.520416 | 3_3:+55539046 | Msa0459160:CDS |
| CAAATTCTCAGCAATAAAAG+AGG | 0.520681 | 3_3:-55539153 | None:intergenic |
| GGAGGATGACATTCAGAAAG+AGG | 0.520726 | 3_3:+55538198 | Msa0459160:CDS |
| TTGCTCGTAGATTATTGCAC+CGG | 0.548623 | 3_3:-55538471 | None:intergenic |
| TCCAGGCAAACTTCTGAACC+TGG | 0.552760 | 3_3:-55538940 | None:intergenic |
| TAAATATCCATTAAATTCTG+TGG | 0.554522 | 3_3:-55539102 | None:intergenic |
| GTATTCTTGAGGCAAAGCAT+TGG | 0.555152 | 3_3:+55538996 | Msa0459160:CDS |
| GCAAAACAATCCTCAAGTAC+AGG | 0.563776 | 3_3:+55538490 | Msa0459160:CDS |
| AGCCTCCGAATTCTCAGGGA+CGG | 0.567688 | 3_3:+55538909 | Msa0459160:CDS |
| AACTTCTGAACCTGGCAACA+GGG | 0.601478 | 3_3:-55538932 | None:intergenic |
| GAGGTCGATCAAAAGATGAA+AGG | 0.605953 | 3_3:+55539179 | Msa0459160:CDS |
| CTTCTAACCCCTGAATCTGA+TGG | 0.608216 | 3_3:-55538518 | None:intergenic |
| GATGGCCAAACCTGTACTTG+AGG | 0.609083 | 3_3:-55538500 | None:intergenic |
| ATGAGCAGATGATGAAACAA+AGG | 0.611511 | 3_3:+55539027 | Msa0459160:CDS |
| ACTCTTTGCGGAATAGAAGC+CGG | 0.612299 | 3_3:+55538452 | Msa0459160:CDS |
| ACATAACATGTGACTCGAAG+AGG | 0.616371 | 3_3:+55538177 | Msa0459160:CDS |
| GGTTTGGCCATCAGATTCAG+GGG | 0.628974 | 3_3:+55538511 | Msa0459160:CDS |
| GCCGAGCCTCCGAATTCTCA+GGG | 0.636149 | 3_3:+55538905 | Msa0459160:CDS |
| TATTGCTGAGAATTTGAGGG+AGG | 0.639350 | 3_3:+55539160 | Msa0459160:CDS |
| GCAGATGATGAAACAAAGGA+AGG | 0.642572 | 3_3:+55539031 | Msa0459160:CDS |
| TAACATGTGACTCGAAGAGG+AGG | 0.651743 | 3_3:+55538180 | Msa0459160:CDS |
| ATCCTCACTATCATGGCTAG+AGG | 0.659018 | 3_3:+55538137 | None:intergenic |
| GGCCGTCCCTGAGAATTCGG+AGG | 0.660829 | 3_3:-55538911 | None:intergenic |
| TGGATCAAGAGGTATTCTTG+AGG | 0.709854 | 3_3:+55538985 | Msa0459160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GCATATATTTTTTTTTTAAT+AGG | + | chr3_3:55538401-55538420 | Msa0459160:intron | 10.0% |
| !!! | GCATATATTTTTTTTTTAAT+AGG | + | chr3_3:55538401-55538420 | Msa0459160:intron | 10.0% |
| !!! | ATAATTTGGAATTTTACTAT+AGG | + | chr3_3:55538363-55538382 | Msa0459160:intron | 15.0% |
| !!! | ATAATTTGGAATTTTACTAT+AGG | + | chr3_3:55538363-55538382 | Msa0459160:intron | 15.0% |
| !!! | GGGTATAATTATTTTTTTTG+AGG | - | chr3_3:55538618-55538637 | None:intergenic | 20.0% |
| !! | AATGAAATGATGAATGATAT+TGG | - | chr3_3:55539078-55539097 | None:intergenic | 20.0% |
| !! | TAAATATCCATTAAATTCTG+TGG | - | chr3_3:55539105-55539124 | None:intergenic | 20.0% |
| !!! | GGGTATAATTATTTTTTTTG+AGG | - | chr3_3:55538618-55538637 | None:intergenic | 20.0% |
| !! | AATGAAATGATGAATGATAT+TGG | - | chr3_3:55539078-55539097 | None:intergenic | 20.0% |
| !! | TAAATATCCATTAAATTCTG+TGG | - | chr3_3:55539105-55539124 | None:intergenic | 20.0% |
| ! | TATACTATCCTGCAATAAAA+GGG | + | chr3_3:55538658-55538677 | Msa0459160:intron | 25.0% |
| !!! | TTTAATTTTCCTCTTGCTTT+TGG | + | chr3_3:55538719-55538738 | Msa0459160:intron | 25.0% |
| !!! | ATACGTTTTGATTTTATCAC+TGG | + | chr3_3:55538864-55538883 | Msa0459160:intron | 25.0% |
| ! | ATTCATACCACAGAATTTAA+TGG | + | chr3_3:55539095-55539114 | Msa0459160:CDS | 25.0% |
| !! | TTTTATTGCTGAGAATTTGA+GGG | + | chr3_3:55539157-55539176 | Msa0459160:CDS | 25.0% |
| ! | TATACTATCCTGCAATAAAA+GGG | + | chr3_3:55538658-55538677 | Msa0459160:intron | 25.0% |
| !!! | TTTAATTTTCCTCTTGCTTT+TGG | + | chr3_3:55538719-55538738 | Msa0459160:intron | 25.0% |
| !!! | ATACGTTTTGATTTTATCAC+TGG | + | chr3_3:55538864-55538883 | Msa0459160:intron | 25.0% |
| ! | ATTCATACCACAGAATTTAA+TGG | + | chr3_3:55539095-55539114 | Msa0459160:CDS | 25.0% |
| !! | TTTTATTGCTGAGAATTTGA+GGG | + | chr3_3:55539157-55539176 | Msa0459160:CDS | 25.0% |
| ACATTCAGAAAGAGGAAAAA+TGG | + | chr3_3:55538206-55538225 | Msa0459160:CDS | 30.0% | |
| ! | CTACTTGATAGTATACTACT+GGG | - | chr3_3:55538638-55538657 | None:intergenic | 30.0% |
| ! | ACTACTTGATAGTATACTAC+TGG | - | chr3_3:55538639-55538658 | None:intergenic | 30.0% |
| GTATACTATCCTGCAATAAA+AGG | + | chr3_3:55538657-55538676 | Msa0459160:intron | 30.0% | |
| ATACTATCCTGCAATAAAAG+GGG | + | chr3_3:55538659-55538678 | Msa0459160:intron | 30.0% | |
| AAATAACTACCGTATACATG+AGG | - | chr3_3:55538760-55538779 | None:intergenic | 30.0% | |
| ACTGGAACAAAGTAAAAAGA+TGG | + | chr3_3:55538962-55538981 | Msa0459160:CDS | 30.0% | |
| CAAATTCTCAGCAATAAAAG+AGG | - | chr3_3:55539156-55539175 | None:intergenic | 30.0% | |
| ! | CTTTTATTGCTGAGAATTTG+AGG | + | chr3_3:55539156-55539175 | Msa0459160:CDS | 30.0% |
| ACATTCAGAAAGAGGAAAAA+TGG | + | chr3_3:55538206-55538225 | Msa0459160:CDS | 30.0% | |
| ! | CTACTTGATAGTATACTACT+GGG | - | chr3_3:55538638-55538657 | None:intergenic | 30.0% |
| ! | ACTACTTGATAGTATACTAC+TGG | - | chr3_3:55538639-55538658 | None:intergenic | 30.0% |
| GTATACTATCCTGCAATAAA+AGG | + | chr3_3:55538657-55538676 | Msa0459160:intron | 30.0% | |
| ATACTATCCTGCAATAAAAG+GGG | + | chr3_3:55538659-55538678 | Msa0459160:intron | 30.0% | |
| AAATAACTACCGTATACATG+AGG | - | chr3_3:55538760-55538779 | None:intergenic | 30.0% | |
| ACTGGAACAAAGTAAAAAGA+TGG | + | chr3_3:55538962-55538981 | Msa0459160:CDS | 30.0% | |
| CAAATTCTCAGCAATAAAAG+AGG | - | chr3_3:55539156-55539175 | None:intergenic | 30.0% | |
| ! | CTTTTATTGCTGAGAATTTG+AGG | + | chr3_3:55539156-55539175 | Msa0459160:CDS | 30.0% |
| GATGAAATTAGCACTCTTTG+CGG | + | chr3_3:55538440-55538459 | Msa0459160:CDS | 35.0% | |
| !! | GACTTTTGATTGTTTTGTGC+AGG | + | chr3_3:55538696-55538715 | Msa0459160:intron | 35.0% |
| !! | ACGGTAGTTATTTTCACCTA+TGG | + | chr3_3:55538767-55538786 | Msa0459160:intron | 35.0% |
| !! | CGGTAGTTATTTTCACCTAT+GGG | + | chr3_3:55538768-55538787 | Msa0459160:intron | 35.0% |
| TACAATGTGCCGTATATATG+CGG | - | chr3_3:55538798-55538817 | None:intergenic | 35.0% | |
| ! | TTTTTACTTTGTTCCAGTCC+AGG | - | chr3_3:55538960-55538979 | None:intergenic | 35.0% |
| GGAACAAAGTAAAAAGATGG+TGG | + | chr3_3:55538965-55538984 | Msa0459160:CDS | 35.0% | |
| !! | TAAAAAGATGGTGGATCAAG+AGG | + | chr3_3:55538974-55538993 | Msa0459160:CDS | 35.0% |
| ! | TATTCTTGAGGCAAAGCATT+GGG | + | chr3_3:55538997-55539016 | Msa0459160:CDS | 35.0% |
| ATGAGCAGATGATGAAACAA+AGG | + | chr3_3:55539027-55539046 | Msa0459160:CDS | 35.0% | |
| GATGAAATTAGCACTCTTTG+CGG | + | chr3_3:55538440-55538459 | Msa0459160:CDS | 35.0% | |
| !! | GACTTTTGATTGTTTTGTGC+AGG | + | chr3_3:55538696-55538715 | Msa0459160:intron | 35.0% |
| !! | ACGGTAGTTATTTTCACCTA+TGG | + | chr3_3:55538767-55538786 | Msa0459160:intron | 35.0% |
| !! | CGGTAGTTATTTTCACCTAT+GGG | + | chr3_3:55538768-55538787 | Msa0459160:intron | 35.0% |
| TACAATGTGCCGTATATATG+CGG | - | chr3_3:55538798-55538817 | None:intergenic | 35.0% | |
| ! | TTTTTACTTTGTTCCAGTCC+AGG | - | chr3_3:55538960-55538979 | None:intergenic | 35.0% |
| GGAACAAAGTAAAAAGATGG+TGG | + | chr3_3:55538965-55538984 | Msa0459160:CDS | 35.0% | |
| !! | TAAAAAGATGGTGGATCAAG+AGG | + | chr3_3:55538974-55538993 | Msa0459160:CDS | 35.0% |
| ! | TATTCTTGAGGCAAAGCATT+GGG | + | chr3_3:55538997-55539016 | Msa0459160:CDS | 35.0% |
| ATGAGCAGATGATGAAACAA+AGG | + | chr3_3:55539027-55539046 | Msa0459160:CDS | 35.0% | |
| ACATAACATGTGACTCGAAG+AGG | + | chr3_3:55538177-55538196 | Msa0459160:CDS | 40.0% | |
| TTGCTCGTAGATTATTGCAC+CGG | - | chr3_3:55538474-55538493 | None:intergenic | 40.0% | |
| GCAAAACAATCCTCAAGTAC+AGG | + | chr3_3:55538490-55538509 | Msa0459160:CDS | 40.0% | |
| ACAATCCTCAAGTACAGGTT+TGG | + | chr3_3:55538495-55538514 | Msa0459160:CDS | 40.0% | |
| !!! | TTTTTTTGAGGCCCATCCTT+GGG | - | chr3_3:55538606-55538625 | None:intergenic | 40.0% |
| !!! | TTTTTTTTGAGGCCCATCCT+TGG | - | chr3_3:55538607-55538626 | None:intergenic | 40.0% |
| !!! | TTCCTCTTGCTTTTGGTGTT+AGG | + | chr3_3:55538726-55538745 | Msa0459160:intron | 40.0% |
| !!! | TCTTGCTTTTGGTGTTAGGT+GGG | + | chr3_3:55538730-55538749 | Msa0459160:intron | 40.0% |
| TATATATGCGGTACACCCAT+AGG | - | chr3_3:55538786-55538805 | None:intergenic | 40.0% | |
| ATGGGTGTACCGCATATATA+CGG | + | chr3_3:55538786-55538805 | Msa0459160:intron | 40.0% | |
| !! | TGGATCAAGAGGTATTCTTG+AGG | + | chr3_3:55538985-55539004 | Msa0459160:CDS | 40.0% |
| GTATTCTTGAGGCAAAGCAT+TGG | + | chr3_3:55538996-55539015 | Msa0459160:CDS | 40.0% | |
| GCAGATGATGAAACAAAGGA+AGG | + | chr3_3:55539031-55539050 | Msa0459160:CDS | 40.0% | |
| ATTGGTCATTTCCTGCTTTC+TGG | - | chr3_3:55539060-55539079 | None:intergenic | 40.0% | |
| TATTGCTGAGAATTTGAGGG+AGG | + | chr3_3:55539160-55539179 | Msa0459160:CDS | 40.0% | |
| GAGGTCGATCAAAAGATGAA+AGG | + | chr3_3:55539179-55539198 | Msa0459160:CDS | 40.0% | |
| ACATAACATGTGACTCGAAG+AGG | + | chr3_3:55538177-55538196 | Msa0459160:CDS | 40.0% | |
| TTGCTCGTAGATTATTGCAC+CGG | - | chr3_3:55538474-55538493 | None:intergenic | 40.0% | |
| GCAAAACAATCCTCAAGTAC+AGG | + | chr3_3:55538490-55538509 | Msa0459160:CDS | 40.0% | |
| ACAATCCTCAAGTACAGGTT+TGG | + | chr3_3:55538495-55538514 | Msa0459160:CDS | 40.0% | |
| !!! | TTTTTTTGAGGCCCATCCTT+GGG | - | chr3_3:55538606-55538625 | None:intergenic | 40.0% |
| !!! | TTTTTTTTGAGGCCCATCCT+TGG | - | chr3_3:55538607-55538626 | None:intergenic | 40.0% |
| !!! | TTCCTCTTGCTTTTGGTGTT+AGG | + | chr3_3:55538726-55538745 | Msa0459160:intron | 40.0% |
| !!! | TCTTGCTTTTGGTGTTAGGT+GGG | + | chr3_3:55538730-55538749 | Msa0459160:intron | 40.0% |
| TATATATGCGGTACACCCAT+AGG | - | chr3_3:55538786-55538805 | None:intergenic | 40.0% | |
| ATGGGTGTACCGCATATATA+CGG | + | chr3_3:55538786-55538805 | Msa0459160:intron | 40.0% | |
| !! | TGGATCAAGAGGTATTCTTG+AGG | + | chr3_3:55538985-55539004 | Msa0459160:CDS | 40.0% |
| GTATTCTTGAGGCAAAGCAT+TGG | + | chr3_3:55538996-55539015 | Msa0459160:CDS | 40.0% | |
| GCAGATGATGAAACAAAGGA+AGG | + | chr3_3:55539031-55539050 | Msa0459160:CDS | 40.0% | |
| ATTGGTCATTTCCTGCTTTC+TGG | - | chr3_3:55539060-55539079 | None:intergenic | 40.0% | |
| TATTGCTGAGAATTTGAGGG+AGG | + | chr3_3:55539160-55539179 | Msa0459160:CDS | 40.0% | |
| GAGGTCGATCAAAAGATGAA+AGG | + | chr3_3:55539179-55539198 | Msa0459160:CDS | 40.0% | |
| TAACATGTGACTCGAAGAGG+AGG | + | chr3_3:55538180-55538199 | Msa0459160:CDS | 45.0% | |
| GGAGGATGACATTCAGAAAG+AGG | + | chr3_3:55538198-55538217 | Msa0459160:CDS | 45.0% | |
| ACTCTTTGCGGAATAGAAGC+CGG | + | chr3_3:55538452-55538471 | Msa0459160:CDS | 45.0% | |
| AGGTTTGGCCATCAGATTCA+GGG | + | chr3_3:55538510-55538529 | Msa0459160:CDS | 45.0% | |
| CTTCTAACCCCTGAATCTGA+TGG | - | chr3_3:55538521-55538540 | None:intergenic | 45.0% | |
| !!! | TTTTTTGAGGCCCATCCTTG+GGG | - | chr3_3:55538605-55538624 | None:intergenic | 45.0% |
| ! | GTTTGCACCCCTTTTATTGC+AGG | - | chr3_3:55538669-55538688 | None:intergenic | 45.0% |
| CACCTAACACCAAAAGCAAG+AGG | - | chr3_3:55538731-55538750 | None:intergenic | 45.0% | |
| !!! | CTCTTGCTTTTGGTGTTAGG+TGG | + | chr3_3:55538729-55538748 | Msa0459160:intron | 45.0% |
| !!! | CTTGCTTTTGGTGTTAGGTG+GGG | + | chr3_3:55538731-55538750 | Msa0459160:intron | 45.0% |
| GTGGGGATTCCTCATGTATA+CGG | + | chr3_3:55538748-55538767 | Msa0459160:intron | 45.0% | |
| AACTTCTGAACCTGGCAACA+GGG | - | chr3_3:55538935-55538954 | None:intergenic | 45.0% | |
| AAACTTCTGAACCTGGCAAC+AGG | - | chr3_3:55538936-55538955 | None:intergenic | 45.0% | |
| AAGGAAGGAAACCAGAAAGC+AGG | + | chr3_3:55539046-55539065 | Msa0459160:CDS | 45.0% | |
| TAACATGTGACTCGAAGAGG+AGG | + | chr3_3:55538180-55538199 | Msa0459160:CDS | 45.0% | |
| GGAGGATGACATTCAGAAAG+AGG | + | chr3_3:55538198-55538217 | Msa0459160:CDS | 45.0% | |
| ACTCTTTGCGGAATAGAAGC+CGG | + | chr3_3:55538452-55538471 | Msa0459160:CDS | 45.0% | |
| AGGTTTGGCCATCAGATTCA+GGG | + | chr3_3:55538510-55538529 | Msa0459160:CDS | 45.0% | |
| CTTCTAACCCCTGAATCTGA+TGG | - | chr3_3:55538521-55538540 | None:intergenic | 45.0% | |
| !!! | TTTTTTGAGGCCCATCCTTG+GGG | - | chr3_3:55538605-55538624 | None:intergenic | 45.0% |
| ! | GTTTGCACCCCTTTTATTGC+AGG | - | chr3_3:55538669-55538688 | None:intergenic | 45.0% |
| CACCTAACACCAAAAGCAAG+AGG | - | chr3_3:55538731-55538750 | None:intergenic | 45.0% | |
| !!! | CTCTTGCTTTTGGTGTTAGG+TGG | + | chr3_3:55538729-55538748 | Msa0459160:intron | 45.0% |
| !!! | CTTGCTTTTGGTGTTAGGTG+GGG | + | chr3_3:55538731-55538750 | Msa0459160:intron | 45.0% |
| GTGGGGATTCCTCATGTATA+CGG | + | chr3_3:55538748-55538767 | Msa0459160:intron | 45.0% | |
| AACTTCTGAACCTGGCAACA+GGG | - | chr3_3:55538935-55538954 | None:intergenic | 45.0% | |
| AAACTTCTGAACCTGGCAAC+AGG | - | chr3_3:55538936-55538955 | None:intergenic | 45.0% | |
| AAGGAAGGAAACCAGAAAGC+AGG | + | chr3_3:55539046-55539065 | Msa0459160:CDS | 45.0% | |
| !!! | TTAACTTTTATTTAATAATT+TGG | + | chr3_3:55538349-55538368 | Msa0459160:intron | 5.0% |
| !!! | TTAACTTTTATTTAATAATT+TGG | + | chr3_3:55538349-55538368 | Msa0459160:intron | 5.0% |
| GATGGCCAAACCTGTACTTG+AGG | - | chr3_3:55538503-55538522 | None:intergenic | 50.0% | |
| CAGGTTTGGCCATCAGATTC+AGG | + | chr3_3:55538509-55538528 | Msa0459160:CDS | 50.0% | |
| GGTTTGGCCATCAGATTCAG+GGG | + | chr3_3:55538511-55538530 | Msa0459160:CDS | 50.0% | |
| ! | GGGTTAGAAGTGTGATTGCC+AGG | + | chr3_3:55538531-55538550 | Msa0459160:intron | 50.0% |
| ! | TAGAAGTGTGATTGCCAGGC+AGG | + | chr3_3:55538535-55538554 | Msa0459160:intron | 50.0% |
| ! | AGAAGTGTGATTGCCAGGCA+GGG | + | chr3_3:55538536-55538555 | Msa0459160:intron | 50.0% |
| !!! | TTTTTGAGGCCCATCCTTGG+GGG | - | chr3_3:55538604-55538623 | None:intergenic | 50.0% |
| !! | TCGGCTCTGGGAATGAAAAG+AGG | - | chr3_3:55538890-55538909 | None:intergenic | 50.0% |
| TCCAGGCAAACTTCTGAACC+TGG | - | chr3_3:55538943-55538962 | None:intergenic | 50.0% | |
| GTTCAGAAGTTTGCCTGGAC+TGG | + | chr3_3:55538944-55538963 | Msa0459160:CDS | 50.0% | |
| GATGGCCAAACCTGTACTTG+AGG | - | chr3_3:55538503-55538522 | None:intergenic | 50.0% | |
| CAGGTTTGGCCATCAGATTC+AGG | + | chr3_3:55538509-55538528 | Msa0459160:CDS | 50.0% | |
| GGTTTGGCCATCAGATTCAG+GGG | + | chr3_3:55538511-55538530 | Msa0459160:CDS | 50.0% | |
| ! | GGGTTAGAAGTGTGATTGCC+AGG | + | chr3_3:55538531-55538550 | Msa0459160:intron | 50.0% |
| ! | TAGAAGTGTGATTGCCAGGC+AGG | + | chr3_3:55538535-55538554 | Msa0459160:intron | 50.0% |
| ! | AGAAGTGTGATTGCCAGGCA+GGG | + | chr3_3:55538536-55538555 | Msa0459160:intron | 50.0% |
| !!! | TTTTTGAGGCCCATCCTTGG+GGG | - | chr3_3:55538604-55538623 | None:intergenic | 50.0% |
| !! | TCGGCTCTGGGAATGAAAAG+AGG | - | chr3_3:55538890-55538909 | None:intergenic | 50.0% |
| TCCAGGCAAACTTCTGAACC+TGG | - | chr3_3:55538943-55538962 | None:intergenic | 50.0% | |
| GTTCAGAAGTTTGCCTGGAC+TGG | + | chr3_3:55538944-55538963 | Msa0459160:CDS | 50.0% | |
| TGCAAACAGCTCAACCGAGC+TGG | + | chr3_3:55538574-55538593 | Msa0459160:intron | 55.0% | |
| GCAAACAGCTCAACCGAGCT+GGG | + | chr3_3:55538575-55538594 | Msa0459160:intron | 55.0% | |
| TCCCTGAGAATTCGGAGGCT+CGG | - | chr3_3:55538909-55538928 | None:intergenic | 55.0% | |
| AGCCTCCGAATTCTCAGGGA+CGG | + | chr3_3:55538909-55538928 | Msa0459160:CDS | 55.0% | |
| GCCAGGTTCAGAAGTTTGCC+TGG | + | chr3_3:55538939-55538958 | Msa0459160:CDS | 55.0% | |
| TGCAAACAGCTCAACCGAGC+TGG | + | chr3_3:55538574-55538593 | Msa0459160:intron | 55.0% | |
| GCAAACAGCTCAACCGAGCT+GGG | + | chr3_3:55538575-55538594 | Msa0459160:intron | 55.0% | |
| TCCCTGAGAATTCGGAGGCT+CGG | - | chr3_3:55538909-55538928 | None:intergenic | 55.0% | |
| AGCCTCCGAATTCTCAGGGA+CGG | + | chr3_3:55538909-55538928 | Msa0459160:CDS | 55.0% | |
| GCCAGGTTCAGAAGTTTGCC+TGG | + | chr3_3:55538939-55538958 | Msa0459160:CDS | 55.0% | |
| TGTTTGCACCCCCTCAAGGC+CGG | - | chr3_3:55538562-55538581 | None:intergenic | 60.0% | |
| GAGCTGTTTGCACCCCCTCA+AGG | - | chr3_3:55538566-55538585 | None:intergenic | 60.0% | |
| GAATTCGGAGGCTCGGCTCT+GGG | - | chr3_3:55538902-55538921 | None:intergenic | 60.0% | |
| AGAATTCGGAGGCTCGGCTC+TGG | - | chr3_3:55538903-55538922 | None:intergenic | 60.0% | |
| AGCCGAGCCTCCGAATTCTC+AGG | + | chr3_3:55538904-55538923 | Msa0459160:CDS | 60.0% | |
| GCCGAGCCTCCGAATTCTCA+GGG | + | chr3_3:55538905-55538924 | Msa0459160:CDS | 60.0% | |
| CAGGGCCGTCCCTGAGAATT+CGG | - | chr3_3:55538917-55538936 | None:intergenic | 60.0% | |
| TGTTTGCACCCCCTCAAGGC+CGG | - | chr3_3:55538562-55538581 | None:intergenic | 60.0% | |
| GAGCTGTTTGCACCCCCTCA+AGG | - | chr3_3:55538566-55538585 | None:intergenic | 60.0% | |
| GAATTCGGAGGCTCGGCTCT+GGG | - | chr3_3:55538902-55538921 | None:intergenic | 60.0% | |
| AGAATTCGGAGGCTCGGCTC+TGG | - | chr3_3:55538903-55538922 | None:intergenic | 60.0% | |
| AGCCGAGCCTCCGAATTCTC+AGG | + | chr3_3:55538904-55538923 | Msa0459160:CDS | 60.0% | |
| GCCGAGCCTCCGAATTCTCA+GGG | + | chr3_3:55538905-55538924 | Msa0459160:CDS | 60.0% | |
| CAGGGCCGTCCCTGAGAATT+CGG | - | chr3_3:55538917-55538936 | None:intergenic | 60.0% | |
| GTGTGATTGCCAGGCAGGGC+CGG | + | chr3_3:55538540-55538559 | Msa0459160:intron | 65.0% | |
| TTGAGGCCCATCCTTGGGGG+AGG | - | chr3_3:55538601-55538620 | None:intergenic | 65.0% | |
| GGCCGTCCCTGAGAATTCGG+AGG | - | chr3_3:55538914-55538933 | None:intergenic | 65.0% | |
| GTGTGATTGCCAGGCAGGGC+CGG | + | chr3_3:55538540-55538559 | Msa0459160:intron | 65.0% | |
| TTGAGGCCCATCCTTGGGGG+AGG | - | chr3_3:55538601-55538620 | None:intergenic | 65.0% | |
| GGCCGTCCCTGAGAATTCGG+AGG | - | chr3_3:55538914-55538933 | None:intergenic | 65.0% | |
| TCCTTGGGGGAGGCCCAGCT+CGG | - | chr3_3:55538591-55538610 | None:intergenic | 70.0% | |
| AGCTGGGCCTCCCCCAAGGA+TGG | + | chr3_3:55538591-55538610 | Msa0459160:intron | 70.0% | |
| GCTGGGCCTCCCCCAAGGAT+GGG | + | chr3_3:55538592-55538611 | Msa0459160:intron | 70.0% | |
| TCAGGGACGGCCCTGTTGCC+AGG | + | chr3_3:55538922-55538941 | Msa0459160:CDS | 70.0% | |
| TCCTTGGGGGAGGCCCAGCT+CGG | - | chr3_3:55538591-55538610 | None:intergenic | 70.0% | |
| AGCTGGGCCTCCCCCAAGGA+TGG | + | chr3_3:55538591-55538610 | Msa0459160:intron | 70.0% | |
| GCTGGGCCTCCCCCAAGGAT+GGG | + | chr3_3:55538592-55538611 | Msa0459160:intron | 70.0% | |
| TCAGGGACGGCCCTGTTGCC+AGG | + | chr3_3:55538922-55538941 | Msa0459160:CDS | 70.0% | |
| CCAGGCAGGGCCGGCCTTGA+GGG | + | chr3_3:55538549-55538568 | Msa0459160:intron | 75.0% | |
| CAGGCAGGGCCGGCCTTGAG+GGG | + | chr3_3:55538550-55538569 | Msa0459160:intron | 75.0% | |
| AGGCAGGGCCGGCCTTGAGG+GGG | + | chr3_3:55538551-55538570 | Msa0459160:intron | 75.0% | |
| ACCGAGCTGGGCCTCCCCCA+AGG | + | chr3_3:55538587-55538606 | Msa0459160:intron | 75.0% | |
| CCAGGCAGGGCCGGCCTTGA+GGG | + | chr3_3:55538549-55538568 | Msa0459160:intron | 75.0% | |
| CAGGCAGGGCCGGCCTTGAG+GGG | + | chr3_3:55538550-55538569 | Msa0459160:intron | 75.0% | |
| AGGCAGGGCCGGCCTTGAGG+GGG | + | chr3_3:55538551-55538570 | Msa0459160:intron | 75.0% | |
| ACCGAGCTGGGCCTCCCCCA+AGG | + | chr3_3:55538587-55538606 | Msa0459160:intron | 75.0% | |
| ! | GCCAGGCAGGGCCGGCCTTG+AGG | + | chr3_3:55538548-55538567 | Msa0459160:intron | 80.0% |
| ! | CCCTCAAGGCCGGCCCTGCC+TGG | - | chr3_3:55538552-55538571 | None:intergenic | 80.0% |
| ! | GCCAGGCAGGGCCGGCCTTG+AGG | + | chr3_3:55538548-55538567 | Msa0459160:intron | 80.0% |
| ! | CCCTCAAGGCCGGCCCTGCC+TGG | - | chr3_3:55538552-55538571 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 55538149 | 55539220 | 55538149 | ID=Msa0459160;Name=Msa0459160 |
| chr3_3 | mRNA | 55538149 | 55539220 | 55538149 | ID=Msa0459160-mRNA-1;Parent=Msa0459160;Name=Msa0459160-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|3|0|170 |
| chr3_3 | exon | 55538149 | 55538227 | 55538149 | ID=Msa0459160-mRNA-1:exon:11002;Parent=Msa0459160-mRNA-1 |
| chr3_3 | exon | 55538423 | 55538539 | 55538423 | ID=Msa0459160-mRNA-1:exon:11003;Parent=Msa0459160-mRNA-1 |
| chr3_3 | exon | 55538904 | 55539220 | 55538904 | ID=Msa0459160-mRNA-1:exon:11004;Parent=Msa0459160-mRNA-1 |
| chr3_3 | CDS | 55538149 | 55538227 | 55538149 | ID=Msa0459160-mRNA-1:cds;Parent=Msa0459160-mRNA-1 |
| chr3_3 | CDS | 55538423 | 55538539 | 55538423 | ID=Msa0459160-mRNA-1:cds;Parent=Msa0459160-mRNA-1 |
| chr3_3 | CDS | 55538904 | 55539220 | 55538904 | ID=Msa0459160-mRNA-1:cds;Parent=Msa0459160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
