AlfalfaGEDB | Msa0459160

M. sativa cultivar zhongmu-4 / Msa0459160

KEGG: K09260
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0097159 GO:0120025 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0459160	KEH34477.1	83.529	170	19	1	1	170	1	161	2.21e-97	288

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0459160	sp\|Q9FJK3\|AGL80_ARATH	46.061	165	77	3	1	164	1	154	3.28e-33	122

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0459160	A0A072UY35	83.529	170	19	1	1	170	1	161	1.05e-97	288

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TFs/TRs:

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Gene ID	Type	Classification
Msa0459160	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0013750	Msa0459160	0.815953	7.098063e-52	-8.615850e-47
Msa0015750	Msa0459160	0.826369	2.817643e-54	-8.615850e-47
Msa0016570	Msa0459160	0.846917	1.606637e-59	-8.615850e-47
Msa0016580	Msa0459160	0.806617	7.539953e-50	-8.615850e-47
Msa0102070	Msa0459160	0.849616	2.884948e-60	-8.615850e-47
Msa0110270	Msa0459160	0.807131	5.872166e-50	-8.615850e-47
Msa0142220	Msa0459160	0.816223	6.178829e-52	-8.615850e-47
Msa0145750	Msa0459160	0.831193	1.917444e-55	-8.615850e-47
Msa0153910	Msa0459160	0.829174	5.965474e-55	-8.615850e-47
Msa0197010	Msa0459160	0.801524	8.647909e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0459160	MtrunA17_Chr3g0107461	83.529	170	19	1	1	170	1	161	2.03e-101	288
Msa0459160	MtrunA17_Chr4g0031421	71.831	142	31	1	29	170	1	133	3.31e-69	206
Msa0459160	MtrunA17_Chr3g0105791	71.127	142	32	1	29	170	1	133	1.19e-67	202
Msa0459160	MtrunA17_Chr3g0107381	49.693	163	72	2	1	163	1	153	2.96e-50	160
Msa0459160	MtrunA17_Chr3g0110131	46.951	164	77	3	1	164	1	154	3.97e-38	130
Msa0459160	MtrunA17_Chr2g0283941	40.000	165	90	2	5	169	5	160	3.55e-36	125
Msa0459160	MtrunA17_Chr2g0296861	43.293	164	83	2	1	164	1	154	1.59e-35	121
Msa0459160	MtrunA17_Chr5g0432691	36.196	163	94	2	1	163	1	153	6.50e-33	114
Msa0459160	MtrunA17_Chr8g0351751	38.095	168	93	2	1	166	1	159	1.54e-31	114
Msa0459160	MtrunA17_Chr4g0014321	34.356	163	98	1	1	163	1	154	1.15e-30	111

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0459160	AT5G48670.1	46.061	165	77	3	1	164	1	154	3.33e-34	122
Msa0459160	AT3G05860.2	43.077	130	61	2	1	126	1	121	2.45e-26	99.8
Msa0459160	AT3G05860.3	43.077	130	61	2	1	126	1	121	4.22e-26	100
Msa0459160	AT3G05860.1	43.077	130	61	2	1	126	1	121	8.10e-26	99.8
Msa0459160	AT1G65330.1	37.580	157	88	2	3	159	2	148	1.41e-25	99.4
Msa0459160	AT1G65300.1	36.747	166	94	3	5	170	4	158	3.53e-25	98.2
Msa0459160	AT5G27810.1	46.939	98	43	1	29	126	1	89	2.75e-24	92.0
Msa0459160	AT5G26650.1	34.568	162	96	2	5	166	3	154	3.79e-22	91.7
Msa0459160	AT5G27960.1	32.099	162	100	2	5	166	3	154	2.17e-20	86.3
Msa0459160	AT1G31630.1	34.320	169	84	6	3	163	2	151	2.82e-20	86.3

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Find 40 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTCTGAACCTGGCAAC+AGG	0.366867	3_3:-55538933	None:intergenic
AACTTCTGAACCTGGCAACA+GGG	0.601478	3_3:-55538932	None:intergenic
AAGGAAGGAAACCAGAAAGC+AGG	0.520416	3_3:+55539046	Msa0459160:CDS
AATGAAATGATGAATGATAT+TGG	0.442815	3_3:-55539075	None:intergenic
ACAATCCTCAAGTACAGGTT+TGG	0.465441	3_3:+55538495	Msa0459160:CDS
ACATAACATGTGACTCGAAG+AGG	0.616371	3_3:+55538177	Msa0459160:CDS
ACTCTTTGCGGAATAGAAGC+CGG	0.612299	3_3:+55538452	Msa0459160:CDS
AGCCGAGCCTCCGAATTCTC+AGG	0.422786	3_3:+55538904	Msa0459160:CDS
AGCCTCCGAATTCTCAGGGA+CGG	0.567688	3_3:+55538909	Msa0459160:CDS
AGGTTTGGCCATCAGATTCA+GGG	0.491311	3_3:+55538510	Msa0459160:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACATTCAGAAAGAGGAAAAA+TGG	+	chr3_3:55538206-55538225	Msa0459160:CDS	30.0%
GTATACTATCCTGCAATAAA+AGG	+	chr3_3:55538657-55538676	Msa0459160:intron	30.0%
ATACTATCCTGCAATAAAAG+GGG	+	chr3_3:55538659-55538678	Msa0459160:intron	30.0%
AAATAACTACCGTATACATG+AGG	-	chr3_3:55538760-55538779	None:intergenic	30.0%
ACTGGAACAAAGTAAAAAGA+TGG	+	chr3_3:55538962-55538981	Msa0459160:CDS	30.0%
CAAATTCTCAGCAATAAAAG+AGG	-	chr3_3:55539156-55539175	None:intergenic	30.0%
ACATTCAGAAAGAGGAAAAA+TGG	+	chr3_3:55538206-55538225	Msa0459160:CDS	30.0%
GTATACTATCCTGCAATAAA+AGG	+	chr3_3:55538657-55538676	Msa0459160:intron	30.0%
ATACTATCCTGCAATAAAAG+GGG	+	chr3_3:55538659-55538678	Msa0459160:intron	30.0%
AAATAACTACCGTATACATG+AGG	-	chr3_3:55538760-55538779	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	55538149	55539220	55538149	ID=Msa0459160;Name=Msa0459160
chr3_3	mRNA	55538149	55539220	55538149	ID=Msa0459160-mRNA-1;Parent=Msa0459160;Name=Msa0459160-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0\|0\|0\|1\|1\|1\|3\|0\|170
chr3_3	exon	55538149	55538227	55538149	ID=Msa0459160-mRNA-1:exon:11002;Parent=Msa0459160-mRNA-1
chr3_3	exon	55538423	55538539	55538423	ID=Msa0459160-mRNA-1:exon:11003;Parent=Msa0459160-mRNA-1
chr3_3	exon	55538904	55539220	55538904	ID=Msa0459160-mRNA-1:exon:11004;Parent=Msa0459160-mRNA-1
chr3_3	CDS	55538149	55538227	55538149	ID=Msa0459160-mRNA-1:cds;Parent=Msa0459160-mRNA-1
chr3_3	CDS	55538423	55538539	55538423	ID=Msa0459160-mRNA-1:cds;Parent=Msa0459160-mRNA-1
chr3_3	CDS	55538904	55539220	55538904	ID=Msa0459160-mRNA-1:cds;Parent=Msa0459160-mRNA-1

Gene Sequence

>Msa0459160

ATGGCTAGAGGTAAGGTGAAACTAGCATACATAACATGTGACTCGAAGAGGAGGATGACATTCAGAAAGAGGAAAAATGGAATTATGAAGAAGATTGATGAAATTAGCACTCTTTGCGGAATAGAAGCCGGTGCAATAATCTACGAGCAAAACAATCCTCAAGTACAGGTTTGGCCATCAGATTCAGGGGTTAGAAAGCCGAGCCTCCGAATTCTCAGGGACGGCCCTGTTGCCAGGTTCAGAAGTTTGCCTGGACTGGAACAAAGTAAAAAGATGGTGGATCAAGAGGTATTCTTGAGGCAAAGCATTGGGAAAGTCTATGAGCAGATGATGAAACAAAGGAAGGAAACCAGAAAGCAGGAAATGACCAATATCATTCATCATTTCATTCATACCACAGAATTTAATGGATATTTAATGAGCAAACATGATCTTAATGATTTGTCCTCTTTTATTGCTGAGAATTTGAGGGAGGTCGATCAAAAGATGAAAGGAATGCTAATCGAAGATTGA

Protein sequence

>Msa0459160

MARGKVKLAYITCDSKRRMTFRKRKNGIMKKIDEISTLCGIEAGAIIYEQNNPQVQVWPSDSGVRKPSLRILRDGPVARFRSLPGLEQSKKMVDQEVFLRQSIGKVYEQMMKQRKETRKQEMTNIIHHFIHTTEFNGYLMSKHDLNDLSSFIAENLREVDQKMKGMLIED*