AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1344930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1344930 MtrunA17_Chr1g0155221 99.625 267 1 0 1 267 223 489 0.0 528
Msa1344930 MtrunA17_Chr8g0373181 71.161 267 76 1 1 267 221 486 3.53e-134 387
Msa1344930 MtrunA17_Chr8g0373191 61.654 266 101 1 1 266 193 457 6.25e-115 337
Msa1344930 MtrunA17_Chr7g0273281 47.909 263 131 2 1 263 236 492 4.42e-77 242
Msa1344930 MtrunA17_Chr7g0259221 45.627 263 137 2 1 263 216 472 1.01e-75 238
Msa1344930 MtrunA17_Chr4g0066581 45.627 263 138 1 1 263 226 483 2.89e-71 226
Msa1344930 MtrunA17_Chr7g0259471 43.726 263 142 2 1 263 214 470 2.19e-70 224
Msa1344930 MtrunA17_Chr2g0286721 42.966 263 145 1 1 263 223 480 1.35e-66 214
Msa1344930 MtrunA17_Chr7g0273261 44.737 228 118 2 36 263 15 234 2.57e-63 199
Msa1344930 MtrunA17_Chr5g0404181 68.421 133 41 1 135 267 1 132 4.87e-56 176
Msa1344930 MtrunA17_Chr7g0250881 36.330 267 155 4 1 264 246 500 4.31e-37 137
Msa1344930 MtrunA17_Chr6g0457781 35.094 265 161 5 1 264 286 540 7.59e-37 137
Msa1344930 MtrunA17_Chr3g0121674 33.210 271 163 9 1 262 21 282 1.46e-34 126
Msa1344930 MtrunA17_Chr2g0282031 34.296 277 163 8 1 267 234 501 1.81e-34 130
Msa1344930 MtrunA17_Chr1g0213631 32.353 272 166 9 1 263 167 429 1.44e-33 126
Msa1344930 MtrunA17_Chr1g0213611 30.325 277 176 7 1 267 260 529 1.22e-32 125
Msa1344930 MtrunA17_Chr6g0486021 32.963 270 157 6 1 263 231 483 6.07e-32 122
Msa1344930 MtrunA17_Chr7g0214451 31.618 272 167 7 1 263 215 476 3.24e-31 120
Msa1344930 MtrunA17_Chr4g0004821 32.714 269 159 7 1 263 217 469 4.29e-31 120
Msa1344930 MtrunA17_Chr4g0021771 30.986 284 163 7 1 267 236 503 1.42e-30 119
Msa1344930 MtrunA17_Chr4g0039651 30.325 277 167 7 2 263 232 497 4.78e-28 112
Msa1344930 MtrunA17_Chr3g0144361 31.010 287 173 6 1 266 209 491 5.32e-27 109
Msa1344930 MtrunA17_Chr4g0034681 29.720 286 176 6 1 266 211 491 6.76e-26 106
Msa1344930 MtrunA17_Chr4g0036021 29.268 287 175 7 1 266 208 487 5.47e-25 103
Msa1344930 MtrunA17_Chr5g0432581 27.431 288 181 7 1 266 201 482 8.63e-25 102
Msa1344930 MtrunA17_Chr5g0404191 67.188 64 21 0 1 64 224 287 1.80e-24 99.4
Msa1344930 MtrunA17_Chr3g0146061 35.023 217 120 5 63 266 519 727 2.54e-24 102
Msa1344930 MtrunA17_Chr3g0119401 28.090 267 179 5 1 264 274 530 6.43e-24 100
Msa1344930 MtrunA17_Chr1g0205681 28.889 270 178 8 1 264 225 486 8.90e-24 100
Msa1344930 MtrunA17_Chr3g0144261 35.023 217 120 5 63 266 509 717 8.99e-24 100
Msa1344930 MtrunA17_Chr1g0205671 27.985 268 183 7 1 264 224 485 9.21e-24 99.8
Msa1344930 MtrunA17_Chr8g0373531 26.736 288 183 7 1 266 201 482 1.32e-23 99.4
Msa1344930 MtrunA17_Chr4g0065311 29.057 265 179 5 1 262 220 478 1.46e-23 99.4
Msa1344930 MtrunA17_Chr4g0032021 29.181 281 170 7 1 263 282 551 1.99e-23 99.4
Msa1344930 MtrunA17_Chr5g0394341 29.478 268 179 6 1 264 224 485 4.21e-23 98.2
Msa1344930 MtrunA17_Chr7g0221631 54.795 73 33 0 161 233 45 117 1.26e-22 89.7
Msa1344930 MtrunA17_Chr8g0370151 33.333 222 117 7 63 266 140 348 2.54e-22 94.7
Msa1344930 MtrunA17_Chr3g0078991 27.941 272 179 8 1 264 224 486 4.30e-22 95.1
Msa1344930 MtrunA17_Chr8g0390141 27.037 270 189 6 1 267 226 490 5.06e-22 95.1
Msa1344930 MtrunA17_Chr5g0419321 33.945 218 121 5 63 266 527 735 6.59e-22 95.1
Msa1344930 MtrunA17_Chr1g0205691 28.996 269 179 6 1 264 224 485 6.73e-22 94.7
Msa1344930 MtrunA17_Chr3g0115741 25.556 270 186 3 1 262 224 486 8.91e-22 94.4
Msa1344930 MtrunA17_Chr3g0128171 27.068 266 186 4 1 262 177 438 2.90e-21 92.4
Msa1344930 MtrunA17_Chr5g0403831 26.573 286 188 5 1 266 212 495 3.81e-21 92.4
Msa1344930 MtrunA17_Chr7g0257631 29.630 270 181 5 1 267 260 523 4.11e-21 92.4
Msa1344930 MtrunA17_Chr3g0115751 27.574 272 178 6 1 262 226 488 9.43e-21 91.3
Msa1344930 MtrunA17_Chr4g0065351 28.253 269 186 4 1 267 63 326 1.27e-20 89.7
Msa1344930 MtrunA17_Chr5g0417611 28.519 270 177 7 1 262 225 486 1.70e-20 90.5
Msa1344930 MtrunA17_Chr5g0445601 28.889 270 183 5 1 267 226 489 1.70e-20 90.5
Msa1344930 MtrunA17_Chr5g0407441 33.180 217 124 5 63 266 501 709 4.13e-20 89.7
Msa1344930 MtrunA17_Chr3g0128081 25.940 266 193 3 1 264 224 487 9.38e-20 88.6
Msa1344930 MtrunA17_Chr3g0115781 25.641 273 184 5 1 263 223 486 1.46e-19 87.8
Msa1344930 MtrunA17_Chr6g0485661 27.675 271 176 8 1 258 239 502 2.18e-19 87.4
Msa1344930 MtrunA17_Chr3g0115721 26.493 268 186 3 1 262 221 483 2.79e-19 87.0
Msa1344930 MtrunA17_Chr4g0065324 27.881 269 187 4 1 267 228 491 3.03e-19 87.0
Msa1344930 MtrunA17_Chr3g0078971 28.063 253 171 5 19 267 243 488 5.10e-19 86.3
Msa1344930 MtrunA17_Chr5g0420841 23.704 270 200 5 1 267 223 489 8.17e-19 85.5
Msa1344930 MtrunA17_Chr8g0390521 28.622 283 175 8 1 266 199 471 9.61e-19 85.5
Msa1344930 MtrunA17_Chr3g0115731 25.926 270 185 3 1 262 200 462 1.47e-18 84.7
Msa1344930 MtrunA17_Chr4g0048411 24.535 269 199 3 1 267 224 490 1.93e-18 84.7
Msa1344930 MtrunA17_Chr3g0078791 24.427 262 178 3 1 262 169 410 3.83e-18 83.6
Msa1344930 MtrunA17_Chr6g0486681 25.735 272 190 7 1 267 226 490 1.79e-17 81.6
Msa1344930 MtrunA17_Chr6g0486671 25.735 272 190 7 1 267 226 490 1.79e-17 81.6
Msa1344930 MtrunA17_Chr3g0085971 25.564 266 192 5 1 263 223 485 3.01e-17 80.9
Msa1344930 MtrunA17_Chr3g0115711 24.723 271 186 5 1 262 221 482 4.25e-17 80.5
Msa1344930 MtrunA17_Chr8g0390261 25.735 272 190 7 1 267 226 490 6.79e-17 80.1
Msa1344930 MtrunA17_Chr2g0303731 32.484 157 93 4 1 147 208 361 1.09e-16 79.3
Msa1344930 MtrunA17_Chr2g0303731 32.479 117 75 2 149 264 438 551 1.12e-12 67.8
Msa1344930 MtrunA17_Chr5g0437021 24.815 270 196 6 1 267 223 488 3.10e-16 78.2
Msa1344930 MtrunA17_Chr4g0048051 25.651 269 196 3 1 267 224 490 3.15e-16 78.2
Msa1344930 MtrunA17_Chr1g0164851 25.188 266 194 4 1 264 223 485 5.22e-16 77.4
Msa1344930 MtrunA17_Chr7g0259451 64.000 50 18 0 182 231 1 50 5.92e-16 70.1
Msa1344930 MtrunA17_Chr1g0164871 24.812 266 195 4 1 264 223 485 1.10e-15 76.6
Msa1344930 MtrunA17_Chr5g0434261 27.723 303 152 12 1 256 21 303 1.28e-14 72.4
Msa1344930 MtrunA17_Chr8g0376631 33.613 119 67 3 151 264 439 550 2.32e-14 72.8
Msa1344930 MtrunA17_Chr8g0376631 31.655 139 82 4 1 129 208 343 1.67e-12 67.0
Msa1344930 MtrunA17_Chr5g0434251 30.645 124 74 3 149 267 24 140 8.92e-14 67.4
Msa1344930 MtrunA17_Chr8g0376601 32.500 160 89 5 1 147 208 361 1.00e-13 70.9
Msa1344930 MtrunA17_Chr8g0376601 33.028 109 69 2 149 256 436 541 7.93e-11 62.0
Msa1344930 MtrunA17_Chr2g0303701 29.487 156 94 4 1 146 208 357 2.20e-13 69.7
Msa1344930 MtrunA17_Chr8g0376611 31.405 121 71 3 149 264 368 481 8.18e-13 67.8
Msa1344930 MtrunA17_Chr2g0290181 30.636 173 100 6 1 158 209 376 2.53e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1344930 AT1G75220.1 74.157 267 68 1 1 267 222 487 6.19e-138 397
Msa1344930 AT1G19450.1 71.536 267 75 1 1 267 223 488 3.31e-133 385
Msa1344930 AT2G48020.2 45.627 263 137 2 1 263 202 458 1.82e-76 239
Msa1344930 AT2G48020.1 45.627 263 137 2 1 263 202 458 1.82e-76 239
Msa1344930 AT1G54730.2 48.289 263 130 2 1 263 206 462 1.89e-74 234
Msa1344930 AT5G18840.1 45.318 267 141 1 1 267 218 479 8.52e-72 228
Msa1344930 AT1G08930.1 43.346 263 143 2 1 263 232 488 3.41e-71 227
Msa1344930 AT1G08930.2 43.346 263 143 2 1 263 232 488 3.41e-71 227
Msa1344930 AT3G05150.1 43.182 264 143 3 1 263 209 466 6.16e-64 207
Msa1344930 AT3G05150.3 43.182 264 143 3 1 263 209 466 6.16e-64 207
Msa1344930 AT3G05150.2 43.182 264 143 3 1 263 209 466 1.05e-63 207
Msa1344930 AT1G54730.5 43.346 263 122 3 1 263 206 441 2.45e-62 202
Msa1344930 AT3G05400.2 41.353 266 150 2 1 266 180 439 3.76e-61 199
Msa1344930 AT3G05400.1 41.353 266 150 2 1 266 200 459 8.38e-61 199
Msa1344930 AT1G54730.3 45.887 231 119 2 1 231 206 430 4.31e-59 194
Msa1344930 AT1G08920.1 40.684 263 150 2 1 263 206 462 2.17e-58 193
Msa1344930 AT3G05160.3 38.023 263 157 2 1 263 146 402 4.98e-57 188
Msa1344930 AT3G05160.2 38.023 263 157 2 1 263 146 402 4.98e-57 188
Msa1344930 AT3G05160.1 38.023 263 157 2 1 263 195 451 1.42e-56 188
Msa1344930 AT4G04750.1 42.910 268 145 4 1 266 210 471 1.63e-56 188
Msa1344930 AT4G04750.2 42.910 268 145 4 1 266 210 471 1.63e-56 188
Msa1344930 AT5G27350.1 40.304 263 151 2 1 263 205 461 2.06e-56 188
Msa1344930 AT3G05165.3 37.262 263 159 2 1 263 204 460 2.39e-56 187
Msa1344930 AT3G05165.2 37.262 263 159 2 1 263 204 460 2.39e-56 187
Msa1344930 AT3G05165.1 37.262 263 159 2 1 263 204 460 2.39e-56 187
Msa1344930 AT4G04750.3 42.910 268 145 4 1 266 254 515 3.14e-56 189
Msa1344930 AT1G08920.2 39.326 267 155 3 1 263 206 469 8.24e-56 186
Msa1344930 AT5G27360.2 39.163 263 154 2 1 263 105 361 1.72e-55 183
Msa1344930 AT5G27360.5 39.163 263 154 2 1 263 105 361 1.72e-55 183
Msa1344930 AT4G04760.3 40.520 269 151 3 1 266 146 408 2.89e-55 183
Msa1344930 AT4G04760.1 41.264 269 149 4 1 266 205 467 7.75e-55 184
Msa1344930 AT5G27360.1 39.163 263 154 2 1 263 209 465 9.18e-55 184
Msa1344930 AT5G27360.3 39.544 263 153 2 1 263 257 513 2.04e-54 184
Msa1344930 AT3G05155.1 40.530 264 149 3 1 264 201 456 6.39e-53 178
Msa1344930 AT1G08890.1 38.258 264 157 2 1 264 201 458 1.02e-52 178
Msa1344930 AT1G08900.5 38.023 263 157 2 1 263 157 413 1.44e-50 171
Msa1344930 AT1G08900.3 38.023 263 157 2 1 263 191 447 3.00e-50 171
Msa1344930 AT1G08900.1 38.023 263 157 2 1 263 199 455 3.33e-50 171
Msa1344930 AT1G08900.2 38.023 263 157 2 1 263 199 455 3.33e-50 171
Msa1344930 AT3G20460.1 40.304 263 151 2 1 263 227 483 1.74e-48 167
Msa1344930 AT1G54730.4 40.260 231 111 3 1 231 206 409 5.76e-47 162
Msa1344930 AT3G05165.6 35.593 236 146 2 1 236 204 433 3.06e-46 162
Msa1344930 AT1G08920.3 39.316 234 136 2 1 234 206 433 1.42e-45 159
Msa1344930 AT4G04760.2 39.033 269 152 4 1 266 205 464 3.72e-45 158
Msa1344930 AT1G54730.9 44.670 197 103 2 1 197 206 396 8.62e-44 153
Msa1344930 AT1G54730.7 44.670 197 103 2 1 197 206 396 8.62e-44 153
Msa1344930 AT3G05165.4 37.209 215 129 2 1 215 204 412 3.53e-41 147
Msa1344930 AT3G05165.5 37.209 215 129 2 1 215 204 412 3.53e-41 147
Msa1344930 AT1G08900.4 34.855 241 151 2 1 241 199 433 4.61e-39 141
Msa1344930 AT2G43330.1 33.574 277 165 9 1 267 213 480 1.54e-35 133
Msa1344930 AT2G48020.4 38.150 173 101 2 1 173 202 368 1.19e-34 129
Msa1344930 AT1G67300.1 34.586 266 160 5 1 263 232 486 2.13e-32 124
Msa1344930 AT1G67300.3 34.586 266 160 5 1 263 232 486 2.13e-32 124
Msa1344930 AT1G67300.2 33.712 264 166 4 1 263 232 487 2.60e-32 124
Msa1344930 AT1G54730.8 38.071 197 95 3 1 197 206 375 5.14e-32 122
Msa1344930 AT5G16150.2 33.712 264 164 3 1 263 286 539 5.54e-31 120
Msa1344930 AT5G16150.1 33.712 264 164 3 1 263 286 539 5.54e-31 120
Msa1344930 AT5G16150.3 33.712 264 164 3 1 263 286 539 5.54e-31 120
Msa1344930 AT1G54730.11 48.120 133 68 1 1 133 206 337 1.14e-30 117
Msa1344930 AT1G79820.2 33.333 264 164 5 1 263 235 487 1.57e-30 119
Msa1344930 AT1G79820.1 33.333 264 164 5 1 263 235 487 1.57e-30 119
Msa1344930 AT5G17010.1 32.130 277 162 7 2 263 234 499 8.70e-30 117
Msa1344930 AT5G17010.3 32.130 277 162 7 2 263 234 499 8.70e-30 117
Msa1344930 AT5G17010.4 32.130 277 162 7 2 263 234 499 8.70e-30 117
Msa1344930 AT2G20780.2 30.935 278 169 7 1 267 178 443 1.84e-29 115
Msa1344930 AT2G20780.1 30.935 278 169 7 1 267 236 501 2.73e-29 116
Msa1344930 AT5G27360.4 35.294 187 115 2 1 187 209 389 6.60e-29 114
Msa1344930 AT3G03090.1 31.408 277 164 7 2 263 234 499 1.94e-28 113
Msa1344930 AT3G51490.3 33.197 244 140 5 37 266 436 670 6.29e-28 112
Msa1344930 AT3G51490.2 33.197 244 140 5 37 266 486 720 6.50e-28 112
Msa1344930 AT1G05030.2 29.167 264 177 4 1 263 208 462 1.53e-27 110
Msa1344930 AT1G05030.1 30.451 266 171 5 1 263 260 514 1.89e-27 110
Msa1344930 AT2G48020.3 40.741 135 79 1 1 135 202 335 2.16e-27 108
Msa1344930 AT1G67300.6 35.211 213 125 4 1 211 232 433 9.70e-27 108
Msa1344930 AT1G67300.7 35.211 213 125 4 1 211 232 433 9.70e-27 108
Msa1344930 AT3G51490.1 33.755 237 140 5 37 266 486 712 2.10e-26 108
Msa1344930 AT1G67300.4 35.577 208 121 4 1 206 232 428 9.62e-26 105
Msa1344930 AT1G67300.5 35.577 208 121 4 1 206 232 428 9.62e-26 105
Msa1344930 AT4G35300.5 34.842 221 115 5 63 266 321 529 1.04e-25 105
Msa1344930 AT1G77210.3 30.370 270 180 5 1 267 77 341 1.48e-25 103
Msa1344930 AT4G35300.4 35.586 222 112 6 63 266 518 726 2.26e-25 105
Msa1344930 AT4G35300.8 35.586 222 112 6 63 266 518 726 2.26e-25 105
Msa1344930 AT4G35300.6 35.586 222 112 6 63 266 518 726 2.26e-25 105
Msa1344930 AT4G35300.11 35.586 222 112 6 63 266 518 726 2.26e-25 105
Msa1344930 AT4G35300.1 35.586 222 112 6 63 266 518 726 2.26e-25 105
Msa1344930 AT4G35300.10 35.586 222 112 6 63 266 518 726 2.26e-25 105
Msa1344930 AT4G35300.7 35.586 222 112 6 63 266 518 726 2.26e-25 105
Msa1344930 AT4G35300.9 35.586 222 112 6 63 266 508 716 2.27e-25 105
Msa1344930 AT4G35300.2 35.586 222 112 6 63 266 508 716 2.27e-25 105
Msa1344930 AT4G35300.3 35.586 222 112 6 63 266 508 716 2.27e-25 105
Msa1344930 AT1G79820.4 33.649 211 129 4 1 211 235 434 5.70e-25 103
Msa1344930 AT1G77210.2 30.370 270 180 5 1 267 226 490 5.79e-25 103
Msa1344930 AT1G77210.1 30.370 270 180 5 1 267 226 490 5.79e-25 103
Msa1344930 AT2G18480.1 28.223 287 179 8 1 266 203 483 6.90e-25 103
Msa1344930 AT2G16130.1 30.070 286 177 6 1 266 207 489 2.06e-24 102
Msa1344930 AT1G54730.10 43.220 118 61 1 1 118 206 317 4.66e-24 99.4
Msa1344930 AT1G54730.6 43.220 118 61 1 1 118 206 317 4.66e-24 99.4
Msa1344930 AT4G36670.1 27.083 288 184 7 1 267 198 480 1.23e-23 99.8
Msa1344930 AT3G18830.1 26.923 286 185 7 1 266 217 498 2.05e-23 99.4
Msa1344930 AT2G16120.1 29.021 286 180 6 1 266 207 489 4.01e-23 98.6
Msa1344930 AT5G26250.1 29.323 266 181 5 1 264 221 481 5.88e-23 98.2
Msa1344930 AT4G02050.2 29.545 264 179 4 1 262 226 484 6.00e-23 98.2
Msa1344930 AT4G02050.1 29.545 264 179 4 1 262 226 484 6.00e-23 98.2
Msa1344930 AT5G59250.1 29.286 280 169 7 2 263 285 553 2.00e-22 96.7
Msa1344930 AT5G26340.1 27.715 267 185 5 1 264 225 486 2.00e-22 96.7
Msa1344930 AT1G11260.1 26.838 272 189 6 1 267 224 490 2.47e-22 96.3
Msa1344930 AT3G05960.1 28.676 272 175 6 1 264 220 480 3.36e-22 95.9
Msa1344930 AT4G21480.1 27.509 269 191 3 1 267 222 488 1.06e-21 94.4
Msa1344930 AT1G50310.2 24.164 269 200 3 1 267 82 348 1.22e-20 90.5
Msa1344930 AT1G07340.1 29.348 276 170 10 1 264 221 483 2.94e-20 90.1
Msa1344930 AT3G19940.1 25.379 264 192 4 1 262 225 485 3.21e-20 90.1
Msa1344930 AT1G50310.1 24.621 264 195 3 1 262 225 486 4.21e-20 89.7
Msa1344930 AT3G05155.2 43.846 130 69 2 1 130 201 326 1.94e-19 86.7
Msa1344930 AT1G20840.2 33.784 222 116 7 63 266 511 719 3.13e-19 87.4
Msa1344930 AT1G20840.1 33.784 222 116 7 63 266 511 719 3.13e-19 87.4
Msa1344930 AT3G19930.1 25.843 267 191 6 1 264 223 485 1.45e-18 85.5
Msa1344930 AT3G19930.2 25.843 267 191 6 1 264 223 485 1.45e-18 85.5
Msa1344930 AT5G23270.1 25.279 269 196 4 1 267 226 491 3.17e-18 84.3
Msa1344930 AT1G34580.2 25.912 274 187 7 1 264 172 439 1.41e-17 82.4
Msa1344930 AT1G34580.1 25.912 274 187 7 1 264 222 489 2.39e-17 81.6
Msa1344930 AT5G61520.2 25.283 265 190 5 1 262 180 439 3.36e-16 78.2
Msa1344930 AT5G61520.1 25.283 265 190 5 1 262 228 487 4.43e-16 78.2
Msa1344930 AT1G30220.1 31.953 169 102 4 1 159 210 375 1.10e-15 77.0
Msa1344930 AT1G30220.1 36.134 119 64 3 151 264 443 554 3.46e-14 72.4
Msa1344930 AT2G35740.1 30.833 120 79 2 149 267 444 560 3.15e-12 66.6
Msa1344930 AT1G79820.3 31.818 154 96 3 111 263 294 439 1.04e-11 65.1
Msa1344930 AT1G79820.5 32.026 153 95 3 112 263 233 377 2.15e-11 63.9
Msa1344930 AT4G16480.2 30.252 119 75 4 149 264 445 558 5.75e-11 62.8
Msa1344930 AT4G16480.3 30.252 119 75 4 149 264 445 558 5.75e-11 62.8
Msa1344930 AT4G16480.1 30.252 119 75 4 149 264 445 558 5.75e-11 62.8

Find 60 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGATATTGGCTTCCTTTAA+TGG 0.160223 tig0007008:-8651 Msa1344930:intron
CAGTAGGATTTGTTGCTATT+TGG 0.211911 tig0007008:-6895 Msa1344930:CDS
ATGTAATAACTATACTTATT+TGG 0.220119 tig0007008:+6705 Msa1344930:intergenic
TTGCTCTTGGATTGGAGTTC+TGG 0.226307 tig0007008:-7039 Msa1344930:CDS
CAACAGCTTTCTGGGATAAA+TGG 0.228166 tig0007008:-8486 Msa1344930:CDS
TAAAAGTAATATACCATTAA+AGG 0.230881 tig0007008:+8638 Msa1344930:intergenic
AGTAGGATTTGTTGCTATTT+GGG 0.245570 tig0007008:-6894 Msa1344930:CDS
TCAGCAGATTCTTCTTTATA+CGG 0.249477 tig0007008:-7568 Msa1344930:CDS
AGCCATGACTTTAAGTCTTT+TGG 0.256959 tig0007008:-7718 Msa1344930:CDS
CATGGTTATTGCATTCTCTT+TGG 0.261913 tig0007008:-7416 Msa1344930:CDS
CGTTGAAGTTAATGAAATTA+AGG 0.265411 tig0007008:-8862 Msa1344930:intron
TAGTTGAAGTGCTGCTAAAA+AGG 0.313849 tig0007008:+6813 Msa1344930:intergenic
TTGCCACCACTTTAACTTTG+TGG 0.315581 tig0007008:-7869 Msa1344930:CDS
ATGGTTATTGCATTCTCTTT+GGG 0.334752 tig0007008:-7415 Msa1344930:CDS
GGCAAGTGTTGCAAAACTTC+CGG 0.357454 tig0007008:+7101 Msa1344930:intergenic
ATTTGGAGTTGGTGCTGTTC+AGG 0.365404 tig0007008:-7895 Msa1344930:CDS
ATTGCATTCTCTTTGGGAAT+GGG 0.387140 tig0007008:-7409 Msa1344930:CDS
GTCAATCTCGTTCTACTTGA+AGG 0.387687 tig0007008:-7691 Msa1344930:intron
GCAAGGCCTTTGATGTTAAT+CGG 0.388439 tig0007008:+7123 Msa1344930:intergenic
CGGGATATTGAGCCTCTTAT+CGG 0.398563 tig0007008:-7548 Msa1344930:CDS
TCGAGTGACGTAGCTACATT+TGG 0.398676 tig0007008:-7912 Msa1344930:CDS
CAGCAAATTTGCTCTTGGAT+TGG 0.399353 tig0007008:-7047 Msa1344930:CDS
TATACTCGGTAGATCGGAAT+TGG 0.404371 tig0007008:-8522 Msa1344930:intron
AACTCAAGCAAAGAAGATAT+TGG 0.404763 tig0007008:-8664 Msa1344930:CDS
TATTGCATTCTCTTTGGGAA+TGG 0.407792 tig0007008:-7410 Msa1344930:CDS
ATTAACATCAAAGGCCTTGC+CGG 0.413262 tig0007008:-7120 Msa1344930:CDS
ATTGACAGCAAATTTGCTCT+TGG 0.418489 tig0007008:-7052 Msa1344930:CDS
ACAAAGCTTACTAGCCATCT+TGG 0.455523 tig0007008:+9030 Msa1344930:intergenic
AGTACCATCTTTCAAAATGC+TGG 0.456152 tig0007008:-8447 Msa1344930:intron
TTGTGGTTGGCAGACAAATC+CGG 0.461343 tig0007008:-7852 Msa1344930:CDS
CAGCAGATTCTTCTTTATAC+GGG 0.467396 tig0007008:-7567 Msa1344930:CDS
AATAAGTAGGAGTCGGCGAC+CGG 0.472494 tig0007008:+7833 Msa1344930:intergenic
CTTAATTTCATTAACTTCAA+CGG 0.472736 tig0007008:+8863 Msa1344930:intergenic
CAACTCCGGCCACCGATAAG+AGG 0.473025 tig0007008:+7536 Msa1344930:intergenic
TATTTGGGTCCCTGAAACAA+AGG 0.474222 tig0007008:-6879 Msa1344930:CDS
CACCACTTTAACTTTGTGGT+TGG 0.478772 tig0007008:-7865 Msa1344930:CDS
GTTGTATGTGCTTTCACAGT+AGG 0.486742 tig0007008:-6911 Msa1344930:CDS
CAACCACGAAAAGAACCAAT+TGG 0.505750 tig0007008:+7080 Msa1344930:intergenic
CTCTTGGATTGGAGTTCTGG+AGG 0.509560 tig0007008:-7036 Msa1344930:intron
GACGTAGCTACATTTGGAGT+TGG 0.522398 tig0007008:-7906 Msa1344930:CDS
CTTATCGGTGGCCGGAGTTG+TGG 0.527718 tig0007008:-7533 Msa1344930:intron
AAAGCTGTTGCAAAACAAGC+AGG 0.541601 tig0007008:+8499 Msa1344930:intergenic
ACCTCAGACATTATAATCCA+TGG 0.541836 tig0007008:+7379 Msa1344930:intergenic
TTGAGCCTCTTATCGGTGGC+CGG 0.548932 tig0007008:-7541 Msa1344930:CDS
AGTTAAGACTCACAATAAGT+AGG 0.554072 tig0007008:+7820 Msa1344930:intergenic
GAAACCTCTGAGCACTTGCA+AGG 0.554147 tig0007008:+8899 Msa1344930:intergenic
ATTTGGGTCCCTGAAACAAA+GGG 0.559564 tig0007008:-6878 Msa1344930:CDS
TGCCAACCACAAAGTTAAAG+TGG 0.569491 tig0007008:+7863 Msa1344930:intergenic
GACTCACAATAAGTAGGAGT+CGG 0.578225 tig0007008:+7826 Msa1344930:intergenic
ATTCTTCCGATTAACATCAA+AGG 0.589346 tig0007008:-7129 Msa1344930:CDS
TGGGAATGGGAGCTATGCCA+TGG 0.590773 tig0007008:-7396 Msa1344930:CDS
CTTGAGTTCTGAAAATCGAA+CGG 0.592122 tig0007008:+8679 Msa1344930:intergenic
GCCATGGATTATAATGTCTG+AGG 0.630227 tig0007008:-7380 Msa1344930:intron
TACAACTGTATATATAGTGA+AGG 0.630572 tig0007008:+6928 Msa1344930:intergenic
GACCAAAAGACTTAAAGTCA+TGG 0.637744 tig0007008:+7716 Msa1344930:intergenic
GTGTTGCAAAACTTCCGGCA+AGG 0.646676 tig0007008:+7106 Msa1344930:intergenic
ATATGTACATACCACAACTC+CGG 0.655357 tig0007008:+7522 Msa1344930:intergenic
AATTCCTTGCAAGTGCTCAG+AGG 0.662499 tig0007008:-8903 Msa1344930:CDS
GATATTGAGCCTCTTATCGG+TGG 0.663285 tig0007008:-7545 Msa1344930:CDS
CAACCACAAAGTTAAAGTGG+TGG 0.674202 tig0007008:+7866 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATTTATAAGCTTATA+AGG + tig0007008:7445-7464 Msa1344930:intergenic 10.0%
!! TTATAAGAATAAATCATAAT+TGG + tig0007008:7756-7775 Msa1344930:intergenic 10.0%
!! AAAAAATTTATAAGCTTATA+AGG + tig0007008:7445-7464 Msa1344930:intergenic 10.0%
!! TTATAAGAATAAATCATAAT+TGG + tig0007008:7756-7775 Msa1344930:intergenic 10.0%
!! TAAAAGTAATATACCATTAA+AGG + tig0007008:7081-7100 Msa1344930:intergenic 15.0%
!! CAAATCAATGAATATTTATA+AGG + tig0007008:7360-7379 Msa1344930:intergenic 15.0%
!!! CATTATACAAATGATATTTT+TGG - tig0007008:8230-8249 Msa1344930:intron 15.0%
!!! TTTAGATTTGTTTATAATGT+CGG - tig0007008:8469-8488 Msa1344930:CDS 15.0%
!!! AATTCTTTTTTATGTTCTTT+TGG - tig0007008:8971-8990 Msa1344930:intron 15.0%
!! ATGTAATAACTATACTTATT+TGG + tig0007008:9014-9033 Msa1344930:intergenic 15.0%
!!! ATATCTTACTTTTTTTGTTA+TGG - tig0007008:9032-9051 Msa1344930:intron 15.0%
!! TAAAAGTAATATACCATTAA+AGG + tig0007008:7081-7100 Msa1344930:intergenic 15.0%
!! CAAATCAATGAATATTTATA+AGG + tig0007008:7360-7379 Msa1344930:intergenic 15.0%
!!! CATTATACAAATGATATTTT+TGG - tig0007008:8230-8249 Msa1344930:intron 15.0%
!!! TTTAGATTTGTTTATAATGT+CGG - tig0007008:8469-8488 Msa1344930:CDS 15.0%
!!! AATTCTTTTTTATGTTCTTT+TGG - tig0007008:8971-8990 Msa1344930:intron 15.0%
!! ATGTAATAACTATACTTATT+TGG + tig0007008:9014-9033 Msa1344930:intergenic 15.0%
!!! ATATCTTACTTTTTTTGTTA+TGG - tig0007008:9032-9051 Msa1344930:intron 15.0%
!!! TAACTTCATTTTATGAATAC+AGG - tig0007008:6761-6780 Msa1344930:three_prime_UTR 20.0%
!! CTTAATTTCATTAACTTCAA+CGG + tig0007008:6856-6875 Msa1344930:intergenic 20.0%
!! TATGAAATATGACTATATCA+GGG + tig0007008:6913-6932 Msa1344930:intergenic 20.0%
!! TTATGAAATATGACTATATC+AGG + tig0007008:6914-6933 Msa1344930:intergenic 20.0%
!! TGAATGAAATACACATTAAA+TGG + tig0007008:6985-7004 Msa1344930:intergenic 20.0%
!!! TCTCAATTAAAATCACTTTT+AGG - tig0007008:7401-7420 Msa1344930:CDS 20.0%
!! TAATGTTTCTTATTCCAAAA+GGG - tig0007008:7570-7589 Msa1344930:CDS 20.0%
!!! TATTTTCTAATTCTAACACA+TGG + tig0007008:7648-7667 Msa1344930:intergenic 20.0%
!!! ACTTTAACTATCTGAAATAT+AGG - tig0007008:7729-7748 Msa1344930:CDS 20.0%
!! AAATTCATTACTTATGAAAC+AGG - tig0007008:7774-7793 Msa1344930:intron 20.0%
!! ATTTCACATTACTATTTGTT+CGG - tig0007008:7935-7954 Msa1344930:intron 20.0%
!!! ATACAAATGATATTTTTGGT+AGG - tig0007008:8234-8253 Msa1344930:intron 20.0%
!! TAATATTATCGAAGCATATA+CGG + tig0007008:8364-8383 Msa1344930:intergenic 20.0%
!! AAAAAAGAATTGAATCAATG+AGG + tig0007008:8962-8981 Msa1344930:intergenic 20.0%
!!! TAACTTCATTTTATGAATAC+AGG - tig0007008:6761-6780 Msa1344930:three_prime_UTR 20.0%
!! CTTAATTTCATTAACTTCAA+CGG + tig0007008:6856-6875 Msa1344930:intergenic 20.0%
!! TATGAAATATGACTATATCA+GGG + tig0007008:6913-6932 Msa1344930:intergenic 20.0%
!! TTATGAAATATGACTATATC+AGG + tig0007008:6914-6933 Msa1344930:intergenic 20.0%
!! TGAATGAAATACACATTAAA+TGG + tig0007008:6985-7004 Msa1344930:intergenic 20.0%
!!! TCTCAATTAAAATCACTTTT+AGG - tig0007008:7401-7420 Msa1344930:CDS 20.0%
!! TAATGTTTCTTATTCCAAAA+GGG - tig0007008:7570-7589 Msa1344930:CDS 20.0%
!!! TATTTTCTAATTCTAACACA+TGG + tig0007008:7648-7667 Msa1344930:intergenic 20.0%
!!! ACTTTAACTATCTGAAATAT+AGG - tig0007008:7729-7748 Msa1344930:CDS 20.0%
!! AAATTCATTACTTATGAAAC+AGG - tig0007008:7774-7793 Msa1344930:intron 20.0%
!! ATTTCACATTACTATTTGTT+CGG - tig0007008:7935-7954 Msa1344930:intron 20.0%
!!! ATACAAATGATATTTTTGGT+AGG - tig0007008:8234-8253 Msa1344930:intron 20.0%
!! TAATATTATCGAAGCATATA+CGG + tig0007008:8364-8383 Msa1344930:intergenic 20.0%
!! AAAAAAGAATTGAATCAATG+AGG + tig0007008:8962-8981 Msa1344930:intergenic 20.0%
! TTTATGAATACAGGCAAAAA+TGG - tig0007008:6770-6789 Msa1344930:three_prime_UTR 25.0%
! TTATGAATACAGGCAAAAAT+GGG - tig0007008:6771-6790 Msa1344930:three_prime_UTR 25.0%
! CGTTGAAGTTAATGAAATTA+AGG - tig0007008:6854-6873 Msa1344930:CDS 25.0%
! ATGAAATATGACTATATCAG+GGG + tig0007008:6912-6931 Msa1344930:intergenic 25.0%
! ATCCATATGCAATATAAAGT+AGG - tig0007008:7118-7137 Msa1344930:CDS 25.0%
! ATCCTACTTTATATTGCATA+TGG + tig0007008:7123-7142 Msa1344930:intergenic 25.0%
! CTAATGTTTCTTATTCCAAA+AGG - tig0007008:7569-7588 Msa1344930:CDS 25.0%
! ATAATACCTTGCAATATTGT+TGG + tig0007008:7708-7727 Msa1344930:intergenic 25.0%
! TAATCAAAATCTTCTATTGC+AGG - tig0007008:7965-7984 Msa1344930:intron 25.0%
! ATATCAGCAAATTCTTCTTT+AGG - tig0007008:8062-8081 Msa1344930:intron 25.0%
!!! CAAATTCTTCTTTAGGTTTT+TGG - tig0007008:8069-8088 Msa1344930:intron 25.0%
! ATAAACTTCCAATTTCTTTC+AGG - tig0007008:8276-8295 Msa1344930:intron 25.0%
! CACATTATAATATACAAGAG+GGG + tig0007008:8412-8431 Msa1344930:intergenic 25.0%
! GCACATTATAATATACAAGA+GGG + tig0007008:8413-8432 Msa1344930:intergenic 25.0%
!!! AAGCTTTTGAGTTTAATAAC+CGG + tig0007008:8498-8517 Msa1344930:intergenic 25.0%
! TACAACTGTATATATAGTGA+AGG + tig0007008:8791-8810 Msa1344930:intergenic 25.0%
! AACTTCATCTGAAAAATTGT+TGG + tig0007008:8882-8901 Msa1344930:intergenic 25.0%
!! TCAATGAGGAAAATTTTTCA+AGG + tig0007008:8948-8967 Msa1344930:intergenic 25.0%
! TTTATGAATACAGGCAAAAA+TGG - tig0007008:6770-6789 Msa1344930:three_prime_UTR 25.0%
! TTATGAATACAGGCAAAAAT+GGG - tig0007008:6771-6790 Msa1344930:three_prime_UTR 25.0%
! CGTTGAAGTTAATGAAATTA+AGG - tig0007008:6854-6873 Msa1344930:CDS 25.0%
! ATGAAATATGACTATATCAG+GGG + tig0007008:6912-6931 Msa1344930:intergenic 25.0%
! ATCCATATGCAATATAAAGT+AGG - tig0007008:7118-7137 Msa1344930:CDS 25.0%
! ATCCTACTTTATATTGCATA+TGG + tig0007008:7123-7142 Msa1344930:intergenic 25.0%
! CTAATGTTTCTTATTCCAAA+AGG - tig0007008:7569-7588 Msa1344930:CDS 25.0%
! ATAATACCTTGCAATATTGT+TGG + tig0007008:7708-7727 Msa1344930:intergenic 25.0%
! TAATCAAAATCTTCTATTGC+AGG - tig0007008:7965-7984 Msa1344930:intron 25.0%
! ATATCAGCAAATTCTTCTTT+AGG - tig0007008:8062-8081 Msa1344930:intron 25.0%
!!! CAAATTCTTCTTTAGGTTTT+TGG - tig0007008:8069-8088 Msa1344930:intron 25.0%
! ATAAACTTCCAATTTCTTTC+AGG - tig0007008:8276-8295 Msa1344930:intron 25.0%
! CACATTATAATATACAAGAG+GGG + tig0007008:8412-8431 Msa1344930:intergenic 25.0%
! GCACATTATAATATACAAGA+GGG + tig0007008:8413-8432 Msa1344930:intergenic 25.0%
!!! AAGCTTTTGAGTTTAATAAC+CGG + tig0007008:8498-8517 Msa1344930:intergenic 25.0%
! TACAACTGTATATATAGTGA+AGG + tig0007008:8791-8810 Msa1344930:intergenic 25.0%
! AACTTCATCTGAAAAATTGT+TGG + tig0007008:8882-8901 Msa1344930:intergenic 25.0%
!! TCAATGAGGAAAATTTTTCA+AGG + tig0007008:8948-8967 Msa1344930:intergenic 25.0%
AACTCAAGCAAAGAAGATAT+TGG - tig0007008:7052-7071 Msa1344930:CDS 30.0%
!! AAGATATTGGCTTCCTTTAA+TGG - tig0007008:7065-7084 Msa1344930:CDS 30.0%
CAAGTTAGTATAAGCTAGTT+AGG + tig0007008:7168-7187 Msa1344930:intergenic 30.0%
! CTAACTAGCTTATACTAACT+TGG - tig0007008:7166-7185 Msa1344930:intron 30.0%
CTAACTTGGACTTATATACT+CGG - tig0007008:7180-7199 Msa1344930:intron 30.0%
CTATTCTCAAGTTATGTGAT+AGG - tig0007008:7315-7334 Msa1344930:intron 30.0%
ATGAAACCAACAATATTGCA+AGG - tig0007008:7699-7718 Msa1344930:CDS 30.0%
AGTTAAGACTCACAATAAGT+AGG + tig0007008:7899-7918 Msa1344930:intergenic 30.0%
! ATTGTGTTGAATTTGTTCTC+AGG - tig0007008:8114-8133 Msa1344930:intron 30.0%
TCAGCAGATTCTTCTTTATA+CGG - tig0007008:8148-8167 Msa1344930:intron 30.0%
ATGGTTATTGCATTCTCTTT+GGG - tig0007008:8301-8320 Msa1344930:intron 30.0%
GGCACATTATAATATACAAG+AGG + tig0007008:8414-8433 Msa1344930:intergenic 30.0%
CCAAGATATTGAAGTGTAAT+CGG - tig0007008:8432-8451 Msa1344930:intron 30.0%
AAACTCAAAAGCTTCTCAAT+TGG - tig0007008:8504-8523 Msa1344930:CDS 30.0%
ATTCTTCCGATTAACATCAA+AGG - tig0007008:8587-8606 Msa1344930:intron 30.0%
!! AGTAGGATTTGTTGCTATTT+GGG - tig0007008:8822-8841 Msa1344930:intron 30.0%
AACTCAAGCAAAGAAGATAT+TGG - tig0007008:7052-7071 Msa1344930:CDS 30.0%
!! AAGATATTGGCTTCCTTTAA+TGG - tig0007008:7065-7084 Msa1344930:CDS 30.0%
CAAGTTAGTATAAGCTAGTT+AGG + tig0007008:7168-7187 Msa1344930:intergenic 30.0%
! CTAACTAGCTTATACTAACT+TGG - tig0007008:7166-7185 Msa1344930:intron 30.0%
CTAACTTGGACTTATATACT+CGG - tig0007008:7180-7199 Msa1344930:intron 30.0%
CTATTCTCAAGTTATGTGAT+AGG - tig0007008:7315-7334 Msa1344930:intron 30.0%
ATGAAACCAACAATATTGCA+AGG - tig0007008:7699-7718 Msa1344930:CDS 30.0%
AGTTAAGACTCACAATAAGT+AGG + tig0007008:7899-7918 Msa1344930:intergenic 30.0%
! ATTGTGTTGAATTTGTTCTC+AGG - tig0007008:8114-8133 Msa1344930:intron 30.0%
TCAGCAGATTCTTCTTTATA+CGG - tig0007008:8148-8167 Msa1344930:intron 30.0%
ATGGTTATTGCATTCTCTTT+GGG - tig0007008:8301-8320 Msa1344930:intron 30.0%
GGCACATTATAATATACAAG+AGG + tig0007008:8414-8433 Msa1344930:intergenic 30.0%
CCAAGATATTGAAGTGTAAT+CGG - tig0007008:8432-8451 Msa1344930:intron 30.0%
AAACTCAAAAGCTTCTCAAT+TGG - tig0007008:8504-8523 Msa1344930:CDS 30.0%
ATTCTTCCGATTAACATCAA+AGG - tig0007008:8587-8606 Msa1344930:intron 30.0%
!! AGTAGGATTTGTTGCTATTT+GGG - tig0007008:8822-8841 Msa1344930:intron 30.0%
!! CTTGAGTTCTGAAAATCGAA+CGG + tig0007008:7040-7059 Msa1344930:intergenic 35.0%
ATAAGCTAGTTAGGCTCTTA+TGG + tig0007008:7159-7178 Msa1344930:intergenic 35.0%
GACTTATATACTCGGTAGAT+CGG - tig0007008:7188-7207 Msa1344930:intron 35.0%
!! TTGTTTTGCAACAGCTTTCT+GGG - tig0007008:7222-7241 Msa1344930:intron 35.0%
!! AGCATTTTGAAAGATGGTAC+TGG + tig0007008:7270-7289 Msa1344930:intergenic 35.0%
AGTACCATCTTTCAAAATGC+TGG - tig0007008:7269-7288 Msa1344930:intron 35.0%
!! CATACCAGCATTTTGAAAGA+TGG + tig0007008:7276-7295 Msa1344930:intergenic 35.0%
! AGCCATGACTTTAAGTCTTT+TGG - tig0007008:7998-8017 Msa1344930:intron 35.0%
GACCAAAAGACTTAAAGTCA+TGG + tig0007008:8003-8022 Msa1344930:intergenic 35.0%
CAGCAGATTCTTCTTTATAC+GGG - tig0007008:8149-8168 Msa1344930:intron 35.0%
ATATGTACATACCACAACTC+CGG + tig0007008:8197-8216 Msa1344930:intergenic 35.0%
! TTCCAATTTCTTTCAGGTCA+TGG - tig0007008:8282-8301 Msa1344930:intron 35.0%
AACCATGACCTGAAAGAAAT+TGG + tig0007008:8287-8306 Msa1344930:intergenic 35.0%
CATGGTTATTGCATTCTCTT+TGG - tig0007008:8300-8319 Msa1344930:intron 35.0%
! TATTGCATTCTCTTTGGGAA+TGG - tig0007008:8306-8325 Msa1344930:intron 35.0%
! ATTGCATTCTCTTTGGGAAT+GGG - tig0007008:8307-8326 Msa1344930:intron 35.0%
ACCTCAGACATTATAATCCA+TGG + tig0007008:8340-8359 Msa1344930:intergenic 35.0%
CCGATTACACTTCAATATCT+TGG + tig0007008:8435-8454 Msa1344930:intergenic 35.0%
! TTGTTTATAATGTCGGTGTC+CGG - tig0007008:8476-8495 Msa1344930:CDS 35.0%
! ATTGACAGCAAATTTGCTCT+TGG - tig0007008:8664-8683 Msa1344930:CDS 35.0%
ATAAGAACAAAGGAAGCTTC+TGG + tig0007008:8762-8781 Msa1344930:intergenic 35.0%
AAGCTTCCTTTGTTCTTATC+AGG - tig0007008:8763-8782 Msa1344930:intron 35.0%
AAGGTTCCTGATAAGAACAA+AGG + tig0007008:8772-8791 Msa1344930:intergenic 35.0%
!! CAGTAGGATTTGTTGCTATT+TGG - tig0007008:8821-8840 Msa1344930:intron 35.0%
!! GAGTTTTTCCCTTTGTTTCA+GGG + tig0007008:8849-8868 Msa1344930:intergenic 35.0%
!! AGAGTTTTTCCCTTTGTTTC+AGG + tig0007008:8850-8869 Msa1344930:intergenic 35.0%
!! TAGTTGAAGTGCTGCTAAAA+AGG + tig0007008:8906-8925 Msa1344930:intergenic 35.0%
!! CTTGAGTTCTGAAAATCGAA+CGG + tig0007008:7040-7059 Msa1344930:intergenic 35.0%
ATAAGCTAGTTAGGCTCTTA+TGG + tig0007008:7159-7178 Msa1344930:intergenic 35.0%
GACTTATATACTCGGTAGAT+CGG - tig0007008:7188-7207 Msa1344930:intron 35.0%
!! TTGTTTTGCAACAGCTTTCT+GGG - tig0007008:7222-7241 Msa1344930:intron 35.0%
!! AGCATTTTGAAAGATGGTAC+TGG + tig0007008:7270-7289 Msa1344930:intergenic 35.0%
AGTACCATCTTTCAAAATGC+TGG - tig0007008:7269-7288 Msa1344930:intron 35.0%
!! CATACCAGCATTTTGAAAGA+TGG + tig0007008:7276-7295 Msa1344930:intergenic 35.0%
! AGCCATGACTTTAAGTCTTT+TGG - tig0007008:7998-8017 Msa1344930:intron 35.0%
GACCAAAAGACTTAAAGTCA+TGG + tig0007008:8003-8022 Msa1344930:intergenic 35.0%
CAGCAGATTCTTCTTTATAC+GGG - tig0007008:8149-8168 Msa1344930:intron 35.0%
ATATGTACATACCACAACTC+CGG + tig0007008:8197-8216 Msa1344930:intergenic 35.0%
! TTCCAATTTCTTTCAGGTCA+TGG - tig0007008:8282-8301 Msa1344930:intron 35.0%
AACCATGACCTGAAAGAAAT+TGG + tig0007008:8287-8306 Msa1344930:intergenic 35.0%
CATGGTTATTGCATTCTCTT+TGG - tig0007008:8300-8319 Msa1344930:intron 35.0%
! TATTGCATTCTCTTTGGGAA+TGG - tig0007008:8306-8325 Msa1344930:intron 35.0%
! ATTGCATTCTCTTTGGGAAT+GGG - tig0007008:8307-8326 Msa1344930:intron 35.0%
ACCTCAGACATTATAATCCA+TGG + tig0007008:8340-8359 Msa1344930:intergenic 35.0%
CCGATTACACTTCAATATCT+TGG + tig0007008:8435-8454 Msa1344930:intergenic 35.0%
! TTGTTTATAATGTCGGTGTC+CGG - tig0007008:8476-8495 Msa1344930:CDS 35.0%
! ATTGACAGCAAATTTGCTCT+TGG - tig0007008:8664-8683 Msa1344930:CDS 35.0%
ATAAGAACAAAGGAAGCTTC+TGG + tig0007008:8762-8781 Msa1344930:intergenic 35.0%
AAGCTTCCTTTGTTCTTATC+AGG - tig0007008:8763-8782 Msa1344930:intron 35.0%
AAGGTTCCTGATAAGAACAA+AGG + tig0007008:8772-8791 Msa1344930:intergenic 35.0%
!! CAGTAGGATTTGTTGCTATT+TGG - tig0007008:8821-8840 Msa1344930:intron 35.0%
!! GAGTTTTTCCCTTTGTTTCA+GGG + tig0007008:8849-8868 Msa1344930:intergenic 35.0%
!! AGAGTTTTTCCCTTTGTTTC+AGG + tig0007008:8850-8869 Msa1344930:intergenic 35.0%
!! TAGTTGAAGTGCTGCTAAAA+AGG + tig0007008:8906-8925 Msa1344930:intergenic 35.0%
ACAAAGCTTACTAGCCATCT+TGG + tig0007008:6689-6708 Msa1436500:intergenic 40.0%
TATACTCGGTAGATCGGAAT+TGG - tig0007008:7194-7213 Msa1344930:intron 40.0%
AAAGCTGTTGCAAAACAAGC+AGG + tig0007008:7220-7239 Msa1344930:intergenic 40.0%
!!! CTTGTTTTGCAACAGCTTTC+TGG - tig0007008:7221-7240 Msa1344930:intron 40.0%
!! CAACAGCTTTCTGGGATAAA+TGG - tig0007008:7230-7249 Msa1344930:intron 40.0%
! AACTTCTTAGCAAGCCCTTT+TGG + tig0007008:7587-7606 Msa1344930:intergenic 40.0%
!! GGGCTTGCTAAGAAGTTTAT+AGG - tig0007008:7590-7609 Msa1344930:intron 40.0%
! TTGCCACCACTTTAACTTTG+TGG - tig0007008:7847-7866 Msa1344930:CDS 40.0%
CAACCACAAAGTTAAAGTGG+TGG + tig0007008:7853-7872 Msa1344930:intergenic 40.0%
! CACCACTTTAACTTTGTGGT+TGG - tig0007008:7851-7870 Msa1344930:CDS 40.0%
TGCCAACCACAAAGTTAAAG+TGG + tig0007008:7856-7875 Msa1344930:intergenic 40.0%
GACTCACAATAAGTAGGAGT+CGG + tig0007008:7893-7912 Msa1344930:intergenic 40.0%
GTCAATCTCGTTCTACTTGA+AGG - tig0007008:8025-8044 Msa1344930:intron 40.0%
!! CGTTCTACTTGAAGGTATCA+CGG - tig0007008:8033-8052 Msa1344930:intron 40.0%
!! GTTCTACTTGAAGGTATCAC+GGG - tig0007008:8034-8053 Msa1344930:intron 40.0%
! GCCATGGATTATAATGTCTG+AGG - tig0007008:8336-8355 Msa1344930:intron 40.0%
GCAAGGCCTTTGATGTTAAT+CGG + tig0007008:8596-8615 Msa1344930:intergenic 40.0%
ATTAACATCAAAGGCCTTGC+CGG - tig0007008:8596-8615 Msa1344930:intron 40.0%
! GTTTTGCAACACTTGCCAAT+TGG - tig0007008:8621-8640 Msa1344930:intron 40.0%
!! TTGCCAATTGGTTCTTTTCG+TGG - tig0007008:8633-8652 Msa1344930:intron 40.0%
CAACCACGAAAAGAACCAAT+TGG + tig0007008:8639-8658 Msa1344930:intergenic 40.0%
! CAGCAAATTTGCTCTTGGAT+TGG - tig0007008:8669-8688 Msa1344930:CDS 40.0%
GTTGTATGTGCTTTCACAGT+AGG - tig0007008:8805-8824 Msa1344930:intron 40.0%
TATTTGGGTCCCTGAAACAA+AGG - tig0007008:8837-8856 Msa1344930:intron 40.0%
ATTTGGGTCCCTGAAACAAA+GGG - tig0007008:8838-8857 Msa1344930:intron 40.0%
ACAAAGCTTACTAGCCATCT+TGG + tig0007008:6689-6708 Msa1344930:intergenic 40.0%
TATACTCGGTAGATCGGAAT+TGG - tig0007008:7194-7213 Msa1344930:intron 40.0%
AAAGCTGTTGCAAAACAAGC+AGG + tig0007008:7220-7239 Msa1344930:intergenic 40.0%
!!! CTTGTTTTGCAACAGCTTTC+TGG - tig0007008:7221-7240 Msa1344930:intron 40.0%
!! CAACAGCTTTCTGGGATAAA+TGG - tig0007008:7230-7249 Msa1344930:intron 40.0%
! AACTTCTTAGCAAGCCCTTT+TGG + tig0007008:7587-7606 Msa1344930:intergenic 40.0%
!! GGGCTTGCTAAGAAGTTTAT+AGG - tig0007008:7590-7609 Msa1344930:intron 40.0%
! TTGCCACCACTTTAACTTTG+TGG - tig0007008:7847-7866 Msa1344930:CDS 40.0%
CAACCACAAAGTTAAAGTGG+TGG + tig0007008:7853-7872 Msa1344930:intergenic 40.0%
! CACCACTTTAACTTTGTGGT+TGG - tig0007008:7851-7870 Msa1344930:CDS 40.0%
TGCCAACCACAAAGTTAAAG+TGG + tig0007008:7856-7875 Msa1344930:intergenic 40.0%
GACTCACAATAAGTAGGAGT+CGG + tig0007008:7893-7912 Msa1344930:intergenic 40.0%
GTCAATCTCGTTCTACTTGA+AGG - tig0007008:8025-8044 Msa1344930:intron 40.0%
!! CGTTCTACTTGAAGGTATCA+CGG - tig0007008:8033-8052 Msa1344930:intron 40.0%
!! GTTCTACTTGAAGGTATCAC+GGG - tig0007008:8034-8053 Msa1344930:intron 40.0%
! GCCATGGATTATAATGTCTG+AGG - tig0007008:8336-8355 Msa1344930:intron 40.0%
GCAAGGCCTTTGATGTTAAT+CGG + tig0007008:8596-8615 Msa1344930:intergenic 40.0%
ATTAACATCAAAGGCCTTGC+CGG - tig0007008:8596-8615 Msa1344930:intron 40.0%
! GTTTTGCAACACTTGCCAAT+TGG - tig0007008:8621-8640 Msa1344930:intron 40.0%
!! TTGCCAATTGGTTCTTTTCG+TGG - tig0007008:8633-8652 Msa1344930:intron 40.0%
CAACCACGAAAAGAACCAAT+TGG + tig0007008:8639-8658 Msa1344930:intergenic 40.0%
! CAGCAAATTTGCTCTTGGAT+TGG - tig0007008:8669-8688 Msa1344930:CDS 40.0%
GTTGTATGTGCTTTCACAGT+AGG - tig0007008:8805-8824 Msa1344930:intron 40.0%
TATTTGGGTCCCTGAAACAA+AGG - tig0007008:8837-8856 Msa1344930:intron 40.0%
ATTTGGGTCCCTGAAACAAA+GGG - tig0007008:8838-8857 Msa1344930:intron 40.0%
AATTCCTTGCAAGTGCTCAG+AGG - tig0007008:6813-6832 Msa1344930:three_prime_UTR 45.0%
TCGAGTGACGTAGCTACATT+TGG - tig0007008:7804-7823 Msa1344930:intron 45.0%
! GACGTAGCTACATTTGGAGT+TGG - tig0007008:7810-7829 Msa1344930:intron 45.0%
!! ATTTGGAGTTGGTGCTGTTC+AGG - tig0007008:7821-7840 Msa1344930:intron 45.0%
TTGTGGTTGGCAGACAAATC+CGG - tig0007008:7864-7883 Msa1344930:CDS 45.0%
CGGGATATTGAGCCTCTTAT+CGG - tig0007008:8168-8187 Msa1344930:intron 45.0%
GATATTGAGCCTCTTATCGG+TGG - tig0007008:8171-8190 Msa1344930:intron 45.0%
! GGCAAGTGTTGCAAAACTTC+CGG + tig0007008:8618-8637 Msa1344930:intergenic 45.0%
! TTGCTCTTGGATTGGAGTTC+TGG - tig0007008:8677-8696 Msa1344930:CDS 45.0%
AATTCCTTGCAAGTGCTCAG+AGG - tig0007008:6813-6832 Msa1344930:three_prime_UTR 45.0%
TCGAGTGACGTAGCTACATT+TGG - tig0007008:7804-7823 Msa1344930:intron 45.0%
! GACGTAGCTACATTTGGAGT+TGG - tig0007008:7810-7829 Msa1344930:intron 45.0%
!! ATTTGGAGTTGGTGCTGTTC+AGG - tig0007008:7821-7840 Msa1344930:intron 45.0%
TTGTGGTTGGCAGACAAATC+CGG - tig0007008:7864-7883 Msa1344930:CDS 45.0%
CGGGATATTGAGCCTCTTAT+CGG - tig0007008:8168-8187 Msa1344930:intron 45.0%
GATATTGAGCCTCTTATCGG+TGG - tig0007008:8171-8190 Msa1344930:intron 45.0%
! GGCAAGTGTTGCAAAACTTC+CGG + tig0007008:8618-8637 Msa1344930:intergenic 45.0%
! TTGCTCTTGGATTGGAGTTC+TGG - tig0007008:8677-8696 Msa1344930:CDS 45.0%
GAAACCTCTGAGCACTTGCA+AGG + tig0007008:6820-6839 Msa1344930:intergenic 50.0%
AATAAGTAGGAGTCGGCGAC+CGG + tig0007008:7886-7905 Msa1344930:intergenic 50.0%
GTGTTGCAAAACTTCCGGCA+AGG + tig0007008:8613-8632 Msa1344930:intergenic 50.0%
! CTCTTGGATTGGAGTTCTGG+AGG - tig0007008:8680-8699 Msa1344930:CDS 50.0%
GAAACCTCTGAGCACTTGCA+AGG + tig0007008:6820-6839 Msa1344930:intergenic 50.0%
AATAAGTAGGAGTCGGCGAC+CGG + tig0007008:7886-7905 Msa1344930:intergenic 50.0%
GTGTTGCAAAACTTCCGGCA+AGG + tig0007008:8613-8632 Msa1344930:intergenic 50.0%
! CTCTTGGATTGGAGTTCTGG+AGG - tig0007008:8680-8699 Msa1344930:CDS 50.0%
TTGAGCCTCTTATCGGTGGC+CGG - tig0007008:8175-8194 Msa1344930:intron 55.0%
TGGGAATGGGAGCTATGCCA+TGG - tig0007008:8320-8339 Msa1344930:intron 55.0%
TTGAGCCTCTTATCGGTGGC+CGG - tig0007008:8175-8194 Msa1344930:intron 55.0%
TGGGAATGGGAGCTATGCCA+TGG - tig0007008:8320-8339 Msa1344930:intron 55.0%
CAACTCCGGCCACCGATAAG+AGG + tig0007008:8183-8202 Msa1344930:intergenic 60.0%
CTTATCGGTGGCCGGAGTTG+TGG - tig0007008:8183-8202 Msa1344930:intron 60.0%
CAACTCCGGCCACCGATAAG+AGG + tig0007008:8183-8202 Msa1344930:intergenic 60.0%
CTTATCGGTGGCCGGAGTTG+TGG - tig0007008:8183-8202 Msa1344930:intron 60.0%
Chromosome Type Strat End Strand Name
tig0007008 gene 6680 9058 6680 ID=Msa1344930;Name=Msa1344930
tig0007008 mRNA 6680 9058 6680 ID=Msa1344930-mRNA-1;Parent=Msa1344930;Name=Msa1344930-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|1|0.9|1|0.88|0.9|10|161|267
tig0007008 exon 6680 6953 6680 ID=Msa1344930-mRNA-1:exon:4766;Parent=Msa1344930-mRNA-1
tig0007008 exon 7037 7151 7037 ID=Msa1344930-mRNA-1:exon:4765;Parent=Msa1344930-mRNA-1
tig0007008 exon 7381 7440 7381 ID=Msa1344930-mRNA-1:exon:4764;Parent=Msa1344930-mRNA-1
tig0007008 exon 7534 7602 7534 ID=Msa1344930-mRNA-1:exon:4763;Parent=Msa1344930-mRNA-1
tig0007008 exon 7692 7751 7692 ID=Msa1344930-mRNA-1:exon:4762;Parent=Msa1344930-mRNA-1
tig0007008 exon 7833 7942 7833 ID=Msa1344930-mRNA-1:exon:4761;Parent=Msa1344930-mRNA-1
tig0007008 exon 8448 8532 8448 ID=Msa1344930-mRNA-1:exon:4760;Parent=Msa1344930-mRNA-1
tig0007008 exon 8652 8732 8652 ID=Msa1344930-mRNA-1:exon:4759;Parent=Msa1344930-mRNA-1
tig0007008 exon 8863 8955 8863 ID=Msa1344930-mRNA-1:exon:4758;Parent=Msa1344930-mRNA-1
tig0007008 exon 9041 9058 9041 ID=Msa1344930-mRNA-1:exon:4757;Parent=Msa1344930-mRNA-1
tig0007008 CDS 9041 9058 9041 ID=Msa1344930-mRNA-1:cds;Parent=Msa1344930-mRNA-1
tig0007008 CDS 8863 8955 8863 ID=Msa1344930-mRNA-1:cds;Parent=Msa1344930-mRNA-1
tig0007008 CDS 8652 8732 8652 ID=Msa1344930-mRNA-1:cds;Parent=Msa1344930-mRNA-1
tig0007008 CDS 8448 8532 8448 ID=Msa1344930-mRNA-1:cds;Parent=Msa1344930-mRNA-1
tig0007008 CDS 7833 7942 7833 ID=Msa1344930-mRNA-1:cds;Parent=Msa1344930-mRNA-1
tig0007008 CDS 7692 7751 7692 ID=Msa1344930-mRNA-1:cds;Parent=Msa1344930-mRNA-1
tig0007008 CDS 7534 7602 7534 ID=Msa1344930-mRNA-1:cds;Parent=Msa1344930-mRNA-1
tig0007008 CDS 7381 7440 7381 ID=Msa1344930-mRNA-1:cds;Parent=Msa1344930-mRNA-1
tig0007008 CDS 7037 7151 7037 ID=Msa1344930-mRNA-1:cds;Parent=Msa1344930-mRNA-1
tig0007008 CDS 6841 6953 6841 ID=Msa1344930-mRNA-1:cds;Parent=Msa1344930-mRNA-1
tig0007008 three_prime_UTR 6680 6840 6680 ID=Msa1344930-mRNA-1:three_prime_utr;Parent=Msa1344930-mRNA-1
Gene Sequence

>Msa1344930

GAGTCTCCAAGATGGCTAGCAAAAATGGGCATGACAGAAGAATTTGAAAATTCCTTGCAAGTGCTCAGAGGTTTCGAAACTGATATATCCGTTGAAGTTAATGAAATTAAGACTGCTGTTGCATCGTCAAATAGAAGAACTACCGTTCGATTTTCAGAACTCAAGCAAAGAAGATATTGGCTTCCTTTAATGATCGGAATTGGCCTGCTTGTTTTGCAACAGCTTTCTGGGATAAATGGTGTTCTTTTTTATTCCAGTACCATCTTTCAAAATGCTGGAATTAGTTCGAGTGACGTAGCTACATTTGGAGTTGGTGCTGTTCAGGTTCTTGCCACCACTTTAACTTTGTGGTTGGCAGACAAATCCGGTCGCCGACTCCTACTTATTGTTTCTTCATCAGCCATGACTTTAAGTCTTTTGGTCGTGTCAATCTCGTTCTACTTGAAGGATTATTATATATCAGCAGATTCTTCTTTATACGGGATATTGAGCCTCTTATCGGTGGCCGGAGTTGTGGTCATGGTTATTGCATTCTCTTTGGGAATGGGAGCTATGCCATGGATTATAATGTCTGAGATTCTTCCGATTAACATCAAAGGCCTTGCCGGAAGTTTTGCAACACTTGCCAATTGGTTCTTTTCGTGGTTGATTACATTGACAGCAAATTTGCTCTTGGATTGGAGTTCTGGAGGAACCTTCACTATATATACAGTTGTATGTGCTTTCACAGTAGGATTTGTTGCTATTTGGGTCCCTGAAACAAAGGGAAAAACTCTTGAAGAAATCCAACAATTTTTCAGATGA

Protein sequence

>Msa1344930

ESPRWLAKMGMTEEFENSLQVLRGFETDISVEVNEIKTAVASSNRRTTVRFSELKQRRYWLPLMIGIGLLVLQQLSGINGVLFYSSTIFQNAGISSSDVATFGVGAVQVLATTLTLWLADKSGRRLLLIVSSSAMTLSLLVVSISFYLKDYYISADSSLYGILSLLSVAGVVVMVIAFSLGMGAMPWIIMSEILPINIKGLAGSFATLANWFFSWLITLTANLLLDWSSGGTFTIYTVVCAFTVGFVAIWVPETKGKTLEEIQQFFR*