AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0683150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0683150 MtrunA17_Chr4g0030011 64.135 237 13 4 1 183 1 219 1.81e-91 266
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0683150 AT5G59770.1 56.757 111 30 2 60 170 112 204 2.26e-37 129

Find 64 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGAGAAATACCTTATATTT+AGG 0.112101 4_4:+45573347 Msa0683150:three_prime_UTR
TGGAATTAGCTTTGAGAATT+AGG 0.162526 4_4:+45573327 Msa0683150:three_prime_UTR
AGGAAATCATAATAACTAAA+TGG 0.223354 4_4:-45572554 None:intergenic
GAGAGACATTGTTGTTATTA+TGG 0.224465 4_4:-45570414 None:intergenic
CTGCACAGATTTCTACCTTA+TGG 0.243764 4_4:-45573023 None:intergenic
ATATTCTTCTCCTTTATAAT+TGG 0.246163 4_4:-45572506 None:intergenic
TCTACTAACTTTGATTCATT+GGG 0.249834 4_4:-45570322 None:intergenic
GGAGAAATACCTTATATTTA+GGG 0.264068 4_4:+45573348 Msa0683150:three_prime_UTR
TTCTACTAACTTTGATTCAT+TGG 0.266010 4_4:-45570323 None:intergenic
AACAATCAAATGGTGCAAAT+TGG 0.273132 4_4:+45570289 None:intergenic
CGAAGTCATACATACTAAAA+TGG 0.275021 4_4:-45573224 None:intergenic
TATCCTGTGGGAGTGTTTCC+TGG 0.286736 4_4:+45572310 Msa0683150:CDS
TCTAAAATATTTCCTTTGAT+TGG 0.298079 4_4:-45573138 None:intergenic
AACTCTTCAAATACAGGCTT+GGG 0.300741 4_4:-45573197 None:intergenic
GGAATGGATAAACTATAATT+AGG 0.324528 4_4:-45572835 None:intergenic
TACTGAGTACTGACTAATTA+AGG 0.334013 4_4:-45570570 None:intergenic
CTTTCTGTACCATTGTTACT+AGG 0.336549 4_4:+45572980 Msa0683150:three_prime_UTR
ATAACAATTGTACGAAATAA+TGG 0.346907 4_4:-45573115 None:intergenic
GCTTGGGAAACTGTCCTTCA+TGG 0.349823 4_4:+45572127 Msa0683150:CDS
CCACTGCTACCCTAAATATA+AGG 0.350505 4_4:-45573357 None:intergenic
GCATTATGCTTTCAGTTGCT+TGG 0.401661 4_4:+45572110 Msa0683150:CDS
CATTATGCTTTCAGTTGCTT+GGG 0.402222 4_4:+45572111 Msa0683150:CDS
CTTCATGGATCACCTATATC+AGG 0.406322 4_4:+45572142 Msa0683150:CDS
CCAGGCGCTTCCAATTATAA+AGG 0.426455 4_4:+45572496 Msa0683150:CDS
CTCTCCACTTCCTCCATCAC+TGG 0.426494 4_4:+45570527 Msa0683150:CDS
TAGTTATTATGATTTCCTTA+AGG 0.432805 4_4:+45572559 Msa0683150:CDS
GGAAATCATAATAACTAAAT+GGG 0.435335 4_4:-45572553 None:intergenic
GGAATAAACTCTTCAAATAC+AGG 0.446971 4_4:-45573203 None:intergenic
AAACTCTTCAAATACAGGCT+TGG 0.455897 4_4:-45573198 None:intergenic
TTATAGTTTATCCATTCCTC+TGG 0.461684 4_4:+45572840 Msa0683150:CDS
TACAATTGTTATCCAATCAA+AGG 0.497645 4_4:+45573126 Msa0683150:three_prime_UTR
CCTTTATAATTGGAAGCGCC+TGG 0.502979 4_4:-45572496 None:intergenic
AGTTCCAGTGATGGAGGAAG+TGG 0.507585 4_4:-45570531 None:intergenic
GTTTATTGTGATTTATCCTG+TGG 0.508886 4_4:+45572297 Msa0683150:CDS
AATCAAAGTTAGTAGAAGAG+AGG 0.511792 4_4:+45570329 Msa0683150:five_prime_UTR
CCTTATATTTAGGGTAGCAG+TGG 0.512899 4_4:+45573357 Msa0683150:three_prime_UTR
CGTGACAAGAAAAGAGCATA+AGG 0.514361 4_4:+45572917 Msa0683150:CDS
TTCTATATTCTCCATAGTGA+TGG 0.516810 4_4:+45572183 Msa0683150:CDS
ACTAAATGGGAGGCTTGAAA+AGG 0.523268 4_4:-45572540 None:intergenic
TGCAGTATGGTTGATGTACC+AGG 0.524168 4_4:+45572478 Msa0683150:intron
GCCGCTGCTTGAACAAATGC+AGG 0.533526 4_4:-45572874 None:intergenic
GTGTCCTATTAAAATCCATA+AGG 0.535651 4_4:+45573008 Msa0683150:three_prime_UTR
CATATGAACTCACTTTCTCC+AGG 0.542825 4_4:-45572328 None:intergenic
CTGATATAGGTGATCCATGA+AGG 0.545436 4_4:-45572141 None:intergenic
CTACTAACTTTGATTCATTG+GGG 0.563044 4_4:-45570321 None:intergenic
AAATCTGTGCAGAATAATGC+AGG 0.564159 4_4:+45573034 Msa0683150:three_prime_UTR
AGCATAAGTTCCAGTGATGG+AGG 0.564797 4_4:-45570537 None:intergenic
ACTGGAACTTATGCTTCTGC+CGG 0.569567 4_4:+45570545 Msa0683150:CDS
TTTATTGTGATTTATCCTGT+GGG 0.570256 4_4:+45572298 Msa0683150:CDS
ACTAACTTTGATTCATTGGG+GGG 0.572060 4_4:-45570319 None:intergenic
ACCTGCATTTGTTCAAGCAG+CGG 0.572458 4_4:+45572873 Msa0683150:CDS
GTACTGACTAATTAAGGTGC+CGG 0.579270 4_4:-45570564 None:intergenic
GAAGAGAGGAGAGAATCCAT+TGG 0.582790 4_4:+45570343 Msa0683150:five_prime_UTR
TATAGTTTGAACCAGAGGAA+TGG 0.586252 4_4:-45572851 None:intergenic
CTTGAAAAGAGTTGTAAGCA+AGG 0.590281 4_4:-45570460 None:intergenic
TACTAACTTTGATTCATTGG+GGG 0.591664 4_4:-45570320 None:intergenic
ATACAGGCTTGGGGTGACAC+AGG 0.606804 4_4:-45573187 None:intergenic
TCTCCAGGAAACACTCCCAC+AGG 0.614332 4_4:-45572313 None:intergenic
GCAGGTATAGTTTGAACCAG+AGG 0.617176 4_4:-45572856 None:intergenic
AATCATAATAACTAAATGGG+AGG 0.632223 4_4:-45572550 None:intergenic
ACACTTTGGCCTAGTAACAA+TGG 0.643283 4_4:-45572989 None:intergenic
AGAAGCATAAGTTCCAGTGA+TGG 0.646845 4_4:-45570540 None:intergenic
ACTCTTCAAATACAGGCTTG+GGG 0.648938 4_4:-45573196 None:intergenic
AGGATAAATCACAATAAACG+CGG 0.753232 4_4:-45572293 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAATATTGAATTAATGATT+AGG - chr4_4:45570645-45570664 None:intergenic 15.0%
!! AATTCAATAATCTAAACTAA+CGG - chr4_4:45570919-45570938 None:intergenic 15.0%
!! GGTAATTTATTCAATTGAAT+TGG + chr4_4:45571204-45571223 Msa0683150:intron 20.0%
!! TATGACTTATATTCAGAAAT+TGG + chr4_4:45571248-45571267 Msa0683150:intron 20.0%
!! AAGCAAAAAAGAAAAAGAAA+AGG - chr4_4:45571813-45571832 None:intergenic 20.0%
!! CTAATAATCAAAAGATAAAG+AGG - chr4_4:45572268-45572287 None:intergenic 20.0%
!!! CTCTTTATCTTTTGATTATT+AGG + chr4_4:45572266-45572285 Msa0683150:intron 20.0%
!! ATATTCTTCTCCTTTATAAT+TGG - chr4_4:45572509-45572528 None:intergenic 20.0%
!! GGAAATCATAATAACTAAAT+GGG - chr4_4:45572556-45572575 None:intergenic 20.0%
!! AGGAAATCATAATAACTAAA+TGG - chr4_4:45572557-45572576 None:intergenic 20.0%
!! TAGTTATTATGATTTCCTTA+AGG + chr4_4:45572559-45572578 Msa0683150:CDS 20.0%
!!! AAACAACATTTTATATCACA+GGG - chr4_4:45572687-45572706 None:intergenic 20.0%
!!! AAAACAACATTTTATATCAC+AGG - chr4_4:45572688-45572707 None:intergenic 20.0%
!! TCTAATAATCTACAATTCAT+AGG - chr4_4:45572787-45572806 None:intergenic 20.0%
!!! TCAGTAATGATTAAGATTTT+AGG - chr4_4:45573084-45573103 None:intergenic 20.0%
!! ATAACAATTGTACGAAATAA+TGG - chr4_4:45573118-45573137 None:intergenic 20.0%
!!! TCTAAAATATTTCCTTTGAT+TGG - chr4_4:45573141-45573160 None:intergenic 20.0%
! TCTACTAACTTTGATTCATT+GGG - chr4_4:45570325-45570344 None:intergenic 25.0%
! TTCTACTAACTTTGATTCAT+TGG - chr4_4:45570326-45570345 None:intergenic 25.0%
! ATTCAATATTTCATCGTTGA+AGG + chr4_4:45570653-45570672 Msa0683150:intron 25.0%
! AAATTTCAACTACAGTTAGA+AGG - chr4_4:45570754-45570773 None:intergenic 25.0%
! GCAATATCCATATAATAGAA+TGG - chr4_4:45570897-45570916 None:intergenic 25.0%
!!! ATCAGAAGTATTTATACGAT+AGG + chr4_4:45571035-45571054 Msa0683150:intron 25.0%
! ACTTATATTCAGAAATTGGT+TGG + chr4_4:45571252-45571271 Msa0683150:intron 25.0%
!!! GTAGTTTTTCAATTATCCAA+TGG - chr4_4:45571339-45571358 None:intergenic 25.0%
!!! TGTATCTGTTATTTTAGAGT+TGG + chr4_4:45571441-45571460 Msa0683150:intron 25.0%
! TATTCATCAAGGAGAAAAAA+AGG + chr4_4:45571576-45571595 Msa0683150:intron 25.0%
!! TTTTCTCGAATTATTAACAG+TGG - chr4_4:45571880-45571899 None:intergenic 25.0%
! TTATACCTAACTCATGTTTA+TGG + chr4_4:45571977-45571996 Msa0683150:intron 25.0%
! TTTATTGTGATTTATCCTGT+GGG + chr4_4:45572298-45572317 Msa0683150:CDS 25.0%
! AACAAAACTTAACGATAAGA+GGG - chr4_4:45572363-45572382 None:intergenic 25.0%
! AAACAAAACTTAACGATAAG+AGG - chr4_4:45572364-45572383 None:intergenic 25.0%
! AATCATAATAACTAAATGGG+AGG - chr4_4:45572553-45572572 None:intergenic 25.0%
! GCATATAAAATGTTACCTTA+AGG - chr4_4:45572577-45572596 None:intergenic 25.0%
! TCAAACATAATTGAGTAGAA+AGG - chr4_4:45572714-45572733 None:intergenic 25.0%
! GGAATGGATAAACTATAATT+AGG - chr4_4:45572838-45572857 None:intergenic 25.0%
!!! TCTACCTTATGGATTTTAAT+AGG - chr4_4:45573015-45573034 None:intergenic 25.0%
! TACAATTGTTATCCAATCAA+AGG + chr4_4:45573126-45573145 Msa0683150:three_prime_UTR 25.0%
!!! CATTTTAGTATGTATGACTT+CGG + chr4_4:45573225-45573244 Msa0683150:three_prime_UTR 25.0%
! AGGAGAAATACCTTATATTT+AGG + chr4_4:45573347-45573366 Msa0683150:three_prime_UTR 25.0%
! GGAGAAATACCTTATATTTA+GGG + chr4_4:45573348-45573367 Msa0683150:three_prime_UTR 25.0%
TACTAACTTTGATTCATTGG+GGG - chr4_4:45570323-45570342 None:intergenic 30.0%
CTACTAACTTTGATTCATTG+GGG - chr4_4:45570324-45570343 None:intergenic 30.0%
AATCAAAGTTAGTAGAAGAG+AGG + chr4_4:45570329-45570348 Msa0683150:five_prime_UTR 30.0%
! GAGAGACATTGTTGTTATTA+TGG - chr4_4:45570417-45570436 None:intergenic 30.0%
!! TACAACTCTTTTCAAGCAAT+TGG + chr4_4:45570467-45570486 Msa0683150:CDS 30.0%
!! TACTGAGTACTGACTAATTA+AGG - chr4_4:45570573-45570592 None:intergenic 30.0%
GCATTCTTAGAAGTTATACA+CGG + chr4_4:45570692-45570711 Msa0683150:intron 30.0%
CAAGTCTTGAAATGAATTTC+AGG + chr4_4:45570780-45570799 Msa0683150:intron 30.0%
CTCATGAATTCCATTAACAA+TGG - chr4_4:45570871-45570890 None:intergenic 30.0%
CATTGTTAATGGAATTCATG+AGG + chr4_4:45570869-45570888 Msa0683150:intron 30.0%
TGAGGTTCCATTCTATTATA+TGG + chr4_4:45570887-45570906 Msa0683150:intron 30.0%
AACTGTTAATGTAACTCTTC+TGG + chr4_4:45571076-45571095 Msa0683150:intron 30.0%
GCAAGAAAAGTGATAAAAAC+GGG - chr4_4:45571169-45571188 None:intergenic 30.0%
CGCAAGAAAAGTGATAAAAA+CGG - chr4_4:45571170-45571189 None:intergenic 30.0%
!! TTTTTATCACTTTTCTTGCG+TGG + chr4_4:45571170-45571189 Msa0683150:intron 30.0%
TACTCTATATCTCTAACCAT+TGG + chr4_4:45571320-45571339 Msa0683150:intron 30.0%
AACAGTTTAAACAGAAAGCA+AGG - chr4_4:45571497-45571516 None:intergenic 30.0%
CAATTTATGATAAGCAGTGT+TGG + chr4_4:45571540-45571559 Msa0683150:intron 30.0%
TTAGGTACTCATATTCATCA+AGG + chr4_4:45571565-45571584 Msa0683150:intron 30.0%
! ATTCTCTAAAAACAAGGGAA+GGG - chr4_4:45571758-45571777 None:intergenic 30.0%
! CTGACATTCTCTAAAAACAA+GGG - chr4_4:45571763-45571782 None:intergenic 30.0%
AGTTAGGTATAAATGAAGCA+CGG - chr4_4:45571969-45571988 None:intergenic 30.0%
GTATACCATAAACATGAGTT+AGG - chr4_4:45571985-45572004 None:intergenic 30.0%
TGACACAGTATTTATGGATT+TGG - chr4_4:45572020-45572039 None:intergenic 30.0%
! GATGATTTTGCTTCAATCTT+TGG + chr4_4:45572065-45572084 Msa0683150:intron 30.0%
GATAGAAAAATGCCTGATAT+AGG - chr4_4:45572157-45572176 None:intergenic 30.0%
TTCTATATTCTCCATAGTGA+TGG + chr4_4:45572183-45572202 Msa0683150:CDS 30.0%
AGGATAAATCACAATAAACG+CGG - chr4_4:45572296-45572315 None:intergenic 30.0%
GTTTATTGTGATTTATCCTG+TGG + chr4_4:45572297-45572316 Msa0683150:CDS 30.0%
! TATATGCAACTGATTAGTCA+TGG + chr4_4:45572590-45572609 Msa0683150:intron 30.0%
TTATAGTTTATCCATTCCTC+TGG + chr4_4:45572840-45572859 Msa0683150:CDS 30.0%
!! TGGATTTTAATAGGACACTT+TGG - chr4_4:45573006-45573025 None:intergenic 30.0%
GTGTCCTATTAAAATCCATA+AGG + chr4_4:45573008-45573027 Msa0683150:three_prime_UTR 30.0%
GGAATAAACTCTTCAAATAC+AGG - chr4_4:45573206-45573225 None:intergenic 30.0%
CGAAGTCATACATACTAAAA+TGG - chr4_4:45573227-45573246 None:intergenic 30.0%
! TTTTAATCTTGCAAGTCGAA+AGG + chr4_4:45573248-45573267 Msa0683150:three_prime_UTR 30.0%
TTCTTCAAAGCAAAAACAAG+AGG - chr4_4:45573288-45573307 None:intergenic 30.0%
!! ACTACTCACTGTATTTTTGT+TGG + chr4_4:45573307-45573326 Msa0683150:three_prime_UTR 30.0%
!! TGGAATTAGCTTTGAGAATT+AGG + chr4_4:45573327-45573346 Msa0683150:three_prime_UTR 30.0%
ACTAACTTTGATTCATTGGG+GGG - chr4_4:45570322-45570341 None:intergenic 35.0%
!! CCTTTTTCACAAAACACCAA+TGG - chr4_4:45570362-45570381 None:intergenic 35.0%
!! CCATTGGTGTTTTGTGAAAA+AGG + chr4_4:45570359-45570378 Msa0683150:five_prime_UTR 35.0%
CTTGAAAAGAGTTGTAAGCA+AGG - chr4_4:45570463-45570482 None:intergenic 35.0%
!! ACTCTTTTCAAGCAATTGGA+TGG + chr4_4:45570471-45570490 Msa0683150:CDS 35.0%
! TTAATGATTAGGAGTGTGTG+AGG - chr4_4:45570634-45570653 None:intergenic 35.0%
ATGACAGTAAAACCTACCAA+TGG - chr4_4:45570720-45570739 None:intergenic 35.0%
CTTGAAATGAATTTCAGGAC+TGG + chr4_4:45570785-45570804 Msa0683150:intron 35.0%
TTTGTCCTTGCCATTGTTAA+TGG + chr4_4:45570858-45570877 Msa0683150:intron 35.0%
GAATTCCATTAACAATGGCA+AGG - chr4_4:45570866-45570885 None:intergenic 35.0%
! TTGATGCATCTTGATGACAT+AGG + chr4_4:45570953-45570972 Msa0683150:intron 35.0%
AATTCTCTAACTCGTGTCTT+TGG + chr4_4:45571111-45571130 Msa0683150:intron 35.0%
AGAAAAGTGATAAAAACGGG+AGG - chr4_4:45571166-45571185 None:intergenic 35.0%
TACATCAGACACTATACTGT+CGG + chr4_4:45571356-45571375 Msa0683150:intron 35.0%
GGAATACATACGATTGATCA+TGG - chr4_4:45571407-45571426 None:intergenic 35.0%
AGATACAAAAAAACGCAGAC+AGG - chr4_4:45571428-45571447 None:intergenic 35.0%
TTAAACAGAAAGCAAGGTCA+AGG - chr4_4:45571491-45571510 None:intergenic 35.0%
! TTCTCTAAAAACAAGGGAAG+GGG - chr4_4:45571757-45571776 None:intergenic 35.0%
! CATTCTCTAAAAACAAGGGA+AGG - chr4_4:45571759-45571778 None:intergenic 35.0%
! CCTGACATTCTCTAAAAACA+AGG - chr4_4:45571764-45571783 None:intergenic 35.0%
!!! CCTTGTTTTTAGAGAATGTC+AGG + chr4_4:45571761-45571780 Msa0683150:intron 35.0%
TCTCGAATTATTAACAGTGG+CGG - chr4_4:45571877-45571896 None:intergenic 35.0%
CCTCTATGACACAGTATTTA+TGG - chr4_4:45572026-45572045 None:intergenic 35.0%
CCATAAATACTGTGTCATAG+AGG + chr4_4:45572023-45572042 Msa0683150:intron 35.0%
CATTATGCTTTCAGTTGCTT+GGG + chr4_4:45572111-45572130 Msa0683150:CDS 35.0%
! TCCATAGTGATGGAAAAATG+AGG + chr4_4:45572193-45572212 Msa0683150:CDS 35.0%
!! ACCTCATTTTTCCATCACTA+TGG - chr4_4:45572197-45572216 None:intergenic 35.0%
TTAGTCGATACAATGCAGTA+TGG + chr4_4:45572465-45572484 Msa0683150:intron 35.0%
TTCTTCTATAACCTCACTCT+TGG + chr4_4:45572623-45572642 Msa0683150:intron 35.0%
ATTGCACGTAGAATTTCGTT+CGG + chr4_4:45572658-45572677 Msa0683150:intron 35.0%
TATAGTTTGAACCAGAGGAA+TGG - chr4_4:45572854-45572873 None:intergenic 35.0%
! CTTATGCTCTTTTCTTGTCA+CGG - chr4_4:45572919-45572938 None:intergenic 35.0%
CTTTCTGTACCATTGTTACT+AGG + chr4_4:45572980-45572999 Msa0683150:three_prime_UTR 35.0%
AAATCTGTGCAGAATAATGC+AGG + chr4_4:45573034-45573053 Msa0683150:three_prime_UTR 35.0%
AACTCTTCAAATACAGGCTT+GGG - chr4_4:45573200-45573219 None:intergenic 35.0%
AAACTCTTCAAATACAGGCT+TGG - chr4_4:45573201-45573220 None:intergenic 35.0%
! AGAAGCATAAGTTCCAGTGA+TGG - chr4_4:45570543-45570562 None:intergenic 40.0%
!! GTACTGACTAATTAAGGTGC+CGG - chr4_4:45570567-45570586 None:intergenic 40.0%
GTTGCTTCCTTTGATGCAAT+GGG + chr4_4:45570821-45570840 Msa0683150:intron 40.0%
TTGCTTCCTTTGATGCAATG+GGG + chr4_4:45570822-45570841 Msa0683150:intron 40.0%
! ACTTTTCTTGCGTGGAGTAT+AGG + chr4_4:45571178-45571197 Msa0683150:intron 40.0%
! TGATAAGCAGTGTTGGAGTT+AGG + chr4_4:45571547-45571566 Msa0683150:intron 40.0%
GCATTATGCTTTCAGTTGCT+TGG + chr4_4:45572110-45572129 Msa0683150:CDS 40.0%
CTGATATAGGTGATCCATGA+AGG - chr4_4:45572144-45572163 None:intergenic 40.0%
CTTCATGGATCACCTATATC+AGG + chr4_4:45572142-45572161 Msa0683150:CDS 40.0%
CATATGAACTCACTTTCTCC+AGG - chr4_4:45572331-45572350 None:intergenic 40.0%
ACTAAATGGGAGGCTTGAAA+AGG - chr4_4:45572543-45572562 None:intergenic 40.0%
TGAGTCAATTTCCAAGAGTG+AGG - chr4_4:45572637-45572656 None:intergenic 40.0%
ATGCTTCATTTCTCTCGATC+AGG + chr4_4:45572811-45572830 Msa0683150:intron 40.0%
! CGTGACAAGAAAAGAGCATA+AGG + chr4_4:45572917-45572936 Msa0683150:CDS 40.0%
ACACTTTGGCCTAGTAACAA+TGG - chr4_4:45572992-45573011 None:intergenic 40.0%
CTGCACAGATTTCTACCTTA+TGG - chr4_4:45573026-45573045 None:intergenic 40.0%
ACTCTTCAAATACAGGCTTG+GGG - chr4_4:45573199-45573218 None:intergenic 40.0%
CCACTGCTACCCTAAATATA+AGG - chr4_4:45573360-45573379 None:intergenic 40.0%
! CCTTATATTTAGGGTAGCAG+TGG + chr4_4:45573357-45573376 Msa0683150:three_prime_UTR 40.0%
AACTTTGATTCATTGGGGGG+AGG - chr4_4:45570319-45570338 None:intergenic 45.0%
GAAGAGAGGAGAGAATCCAT+TGG + chr4_4:45570343-45570362 Msa0683150:five_prime_UTR 45.0%
AGCATAAGTTCCAGTGATGG+AGG - chr4_4:45570540-45570559 None:intergenic 45.0%
ACTGGAACTTATGCTTCTGC+CGG + chr4_4:45570545-45570564 Msa0683150:CDS 45.0%
!! GAAGTTATACACGGTGCCAT+TGG + chr4_4:45570701-45570720 Msa0683150:intron 45.0%
!! TTATACACGGTGCCATTGGT+AGG + chr4_4:45570705-45570724 Msa0683150:intron 45.0%
CGTTGCTTCCTTTGATGCAA+TGG + chr4_4:45570820-45570839 Msa0683150:intron 45.0%
TTTGGTTGAGTGCTTTCTCC+AGG + chr4_4:45571129-45571148 Msa0683150:intron 45.0%
TAAAAACGGGAGGTAACTCC+TGG - chr4_4:45571156-45571175 None:intergenic 45.0%
CAAGGGAAGGGGTTTGTAAA+GGG - chr4_4:45571746-45571765 None:intergenic 45.0%
ACAAGGGAAGGGGTTTGTAA+AGG - chr4_4:45571747-45571766 None:intergenic 45.0%
TGCTTATACCCTACGAAGCA+CGG + chr4_4:45571828-45571847 Msa0683150:intron 45.0%
AATGAAGCACGGATACTCCT+CGG - chr4_4:45571958-45571977 None:intergenic 45.0%
! TGCAGTATGGTTGATGTACC+AGG + chr4_4:45572478-45572497 Msa0683150:intron 45.0%
!! CCTTTATAATTGGAAGCGCC+TGG - chr4_4:45572499-45572518 None:intergenic 45.0%
CCAGGCGCTTCCAATTATAA+AGG + chr4_4:45572496-45572515 Msa0683150:CDS 45.0%
GCAGGTATAGTTTGAACCAG+AGG - chr4_4:45572859-45572878 None:intergenic 45.0%
ACCTGCATTTGTTCAAGCAG+CGG + chr4_4:45572873-45572892 Msa0683150:CDS 45.0%
TTTGATTCATTGGGGGGAGG+TGG - chr4_4:45570316-45570335 None:intergenic 50.0%
! AGTTCCAGTGATGGAGGAAG+TGG - chr4_4:45570534-45570553 None:intergenic 50.0%
CTTCCTTTGATGCAATGGGG+AGG + chr4_4:45570825-45570844 Msa0683150:intron 50.0%
CTTCCTCCCCATTGCATCAA+AGG - chr4_4:45570831-45570850 None:intergenic 50.0%
CTTTGATGCAATGGGGAGGA+AGG + chr4_4:45570829-45570848 Msa0683150:intron 50.0%
CACTATACTGTCGGAGACGT+AGG + chr4_4:45571365-45571384 Msa0683150:intron 50.0%
TACCCTACGAAGCACGGATA+CGG + chr4_4:45571834-45571853 Msa0683150:intron 50.0%
TATGTGACATGTCCGACACC+AGG + chr4_4:45571921-45571940 Msa0683150:intron 50.0%
GCTTGGGAAACTGTCCTTCA+TGG + chr4_4:45572127-45572146 Msa0683150:CDS 50.0%
!! TATCCTGTGGGAGTGTTTCC+TGG + chr4_4:45572310-45572329 Msa0683150:CDS 50.0%
CTCTCCACTTCCTCCATCAC+TGG + chr4_4:45570527-45570546 Msa0683150:CDS 55.0%
! ATTTCAGGACTGGTGCCGAG+CGG + chr4_4:45570795-45570814 Msa0683150:intron 55.0%
AAAGGAAGCAACGCTCCGCT+CGG - chr4_4:45570813-45570832 None:intergenic 55.0%
TGAGTGCTTTCTCCAGGTCC+AGG + chr4_4:45571135-45571154 Msa0683150:intron 55.0%
TCTTGCGTGGAGTATAGGCG+AGG + chr4_4:45571183-45571202 Msa0683150:intron 55.0%
GTCGGAGACGTAGGCACAAT+TGG + chr4_4:45571374-45571393 Msa0683150:intron 55.0%
GTCCGTATCCGTGCTTCGTA+GGG - chr4_4:45571839-45571858 None:intergenic 55.0%
TGTCCGTATCCGTGCTTCGT+AGG - chr4_4:45571840-45571859 None:intergenic 55.0%
ACGAAGCACGGATACGGACA+TGG + chr4_4:45571840-45571859 Msa0683150:intron 55.0%
GATTAGGCGTGTCCTGGTGT+CGG - chr4_4:45571936-45571955 None:intergenic 55.0%
GCACGGATACTCCTCGGATT+AGG - chr4_4:45571952-45571971 None:intergenic 55.0%
TCTCCAGGAAACACTCCCAC+AGG - chr4_4:45572316-45572335 None:intergenic 55.0%
GCCGCTGCTTGAACAAATGC+AGG - chr4_4:45572877-45572896 None:intergenic 55.0%
ATACAGGCTTGGGGTGACAC+AGG - chr4_4:45573190-45573209 None:intergenic 55.0%
ACCAGGACACGCCTAATCCG+AGG + chr4_4:45571938-45571957 Msa0683150:intron 60.0%
! TCCTCGGATTAGGCGTGTCC+TGG - chr4_4:45571942-45571961 None:intergenic 60.0%
CGGGAGGTAACTCCTGGACC+TGG - chr4_4:45571150-45571169 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 45570300 45573380 45570300 ID=Msa0683150;Name=Msa0683150
chr4_4 mRNA 45570300 45573380 45570300 ID=Msa0683150-mRNA-1;Parent=Msa0683150;Name=Msa0683150-mRNA-1;_AED=0.18;_eAED=0.18;_QI=128|0.6|0.66|1|0.2|0.33|6|443|183
chr4_4 exon 45570300 45570578 45570300 ID=Msa0683150-mRNA-1:exon:11052;Parent=Msa0683150-mRNA-1
chr4_4 exon 45570675 45570703 45570675 ID=Msa0683150-mRNA-1:exon:11053;Parent=Msa0683150-mRNA-1
chr4_4 exon 45572096 45572214 45572096 ID=Msa0683150-mRNA-1:exon:11054;Parent=Msa0683150-mRNA-1
chr4_4 exon 45572288 45572337 45572288 ID=Msa0683150-mRNA-1:exon:11055;Parent=Msa0683150-mRNA-1
chr4_4 exon 45572483 45572580 45572483 ID=Msa0683150-mRNA-1:exon:11056;Parent=Msa0683150-mRNA-1
chr4_4 exon 45572833 45573380 45572833 ID=Msa0683150-mRNA-1:exon:11057;Parent=Msa0683150-mRNA-1
chr4_4 five_prime_UTR 45570300 45570427 45570300 ID=Msa0683150-mRNA-1:five_prime_utr;Parent=Msa0683150-mRNA-1
chr4_4 CDS 45570428 45570578 45570428 ID=Msa0683150-mRNA-1:cds;Parent=Msa0683150-mRNA-1
chr4_4 CDS 45570675 45570703 45570675 ID=Msa0683150-mRNA-1:cds;Parent=Msa0683150-mRNA-1
chr4_4 CDS 45572096 45572214 45572096 ID=Msa0683150-mRNA-1:cds;Parent=Msa0683150-mRNA-1
chr4_4 CDS 45572288 45572337 45572288 ID=Msa0683150-mRNA-1:cds;Parent=Msa0683150-mRNA-1
chr4_4 CDS 45572483 45572580 45572483 ID=Msa0683150-mRNA-1:cds;Parent=Msa0683150-mRNA-1
chr4_4 CDS 45572833 45572937 45572833 ID=Msa0683150-mRNA-1:cds;Parent=Msa0683150-mRNA-1
chr4_4 three_prime_UTR 45572938 45573380 45572938 ID=Msa0683150-mRNA-1:three_prime_utr;Parent=Msa0683150-mRNA-1
Gene Sequence

>Msa0683150

ATGTCTCTCAAACTATCAACAACACTTTATCTCCTTGCTTACAACTCTTTTCAAGCAATTGGATGGTTCGTATCATTAATCATCATTTTGTACAATCTTCTCTCCACTTCCTCCATCACTGGAACTTATGCTTCTGCCGGCACCTTAATTAGCTTTCTGCAATGTGCTGCATTCTTAGAAATCATTAGATATTCGCATTATGCTTTCAGTTGCTTGGGAAACTGTCCTTCATGGATCACCTATATCAGGCATTTTTCTATCTTACTATTCTATATTCTCCATAGTGATGGAAAAATGAGGTACACCGCGTTTATTGTGATTTATCCTGTGGGAGTGTTTCCTGGAGAAATATGGTTGATGTACCAGGCGCTTCCAATTATAAAGGAGAAGAATATCTATGCAGATTCCTTTTCAAGCCTCCCATTTAGTTATTATGATTTCCTTAAGGTCCTAATTATAGTTTATCCATTCCTCTGGTTCAAACTATACCTGCATTTGTTCAAGCAGCGGCGTTCAAAACTTTATAAACGCCGTGACAAGAAAAGAGCATAA

Protein sequence

>Msa0683150

MSLKLSTTLYLLAYNSFQAIGWFVSLIIILYNLLSTSSITGTYASAGTLISFLQCAAFLEIIRYSHYAFSCLGNCPSWITYIRHFSILLFYILHSDGKMRYTAFIVIYPVGVFPGEIWLMYQALPIIKEKNIYADSFSSLPFSYYDFLKVLIIVYPFLWFKLYLHLFKQRRSKLYKRRDKKRA*