AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0489330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0489330 MtrunA17_Chr3g0079421 97.727 264 6 0 1 264 1 264 0.0 521
Msa0489330 MtrunA17_Chr5g0435051 75.000 244 59 1 5 248 19 260 6.36e-137 386
Msa0489330 MtrunA17_Chr4g0044201 61.039 231 74 2 16 243 25 242 2.28e-98 288
Msa0489330 MtrunA17_Chr8g0379911 53.279 244 111 2 16 258 28 269 3.56e-86 258
Msa0489330 MtrunA17_Chr2g0284581 53.975 239 107 2 8 243 18 256 6.31e-85 254
Msa0489330 MtrunA17_Chr2g0284591 52.301 239 111 2 8 243 16 254 4.01e-83 250
Msa0489330 MtrunA17_Chr8g0379901 54.709 223 100 1 22 243 35 257 1.62e-81 246
Msa0489330 MtrunA17_Chr2g0284631 48.031 254 126 3 8 258 71 321 2.31e-80 245
Msa0489330 MtrunA17_Chr2g0284611 50.628 239 115 2 8 243 18 256 2.00e-79 240
Msa0489330 MtrunA17_Chr2g0284601 56.158 203 88 1 42 243 6 208 2.00e-74 226
Msa0489330 MtrunA17_Chr7g0217331 48.558 208 103 3 26 231 37 242 1.78e-61 195
Msa0489330 MtrunA17_Chr5g0426131 46.087 230 101 4 25 242 36 254 3.53e-61 194
Msa0489330 MtrunA17_Chr4g0001221 49.351 231 112 4 8 235 56 284 7.81e-60 191
Msa0489330 MtrunA17_Chr2g0333771 48.131 214 107 3 24 235 78 289 8.10e-57 184
Msa0489330 MtrunA17_Chr1g0201331 41.841 239 133 4 1 235 47 283 1.15e-50 168
Msa0489330 MtrunA17_Chr1g0184541 38.117 223 136 2 14 235 50 271 8.13e-44 150
Msa0489330 MtrunA17_Chr4g0001111 47.273 165 82 4 8 169 56 218 4.86e-31 115
Msa0489330 MtrunA17_Chr1g0188771 35.169 236 139 6 25 249 20 252 2.22e-30 114
Msa0489330 MtrunA17_Chr2g0331261 38.333 240 116 10 22 240 16 244 1.12e-28 109
Msa0489330 MtrunA17_Chr6g0478191 34.703 219 133 5 25 234 20 237 2.17e-27 106
Msa0489330 MtrunA17_Chr5g0399341 36.402 239 133 7 25 253 18 247 5.37e-27 105
Msa0489330 MtrunA17_Chr8g0340161 36.709 237 124 9 25 243 18 246 9.16e-27 104
Msa0489330 MtrunA17_Chr1g0146161 37.327 217 127 7 25 234 18 232 2.05e-26 103
Msa0489330 MtrunA17_Chr1g0212671 36.986 219 124 6 25 232 20 235 3.61e-24 97.4
Msa0489330 MtrunA17_Chr4g0001161 47.368 133 66 3 39 169 1 131 4.44e-24 94.4
Msa0489330 MtrunA17_Chr1g0146171 35.484 217 131 7 25 234 18 232 2.18e-23 95.5
Msa0489330 MtrunA17_Chr7g0264961 35.398 226 123 8 30 239 25 243 2.24e-23 95.5
Msa0489330 MtrunA17_Chr4g0030861 37.383 214 118 8 31 232 26 235 1.58e-22 93.2
Msa0489330 MtrunA17_Chr3g0145671 29.200 250 158 7 20 251 31 279 2.99e-22 93.2
Msa0489330 MtrunA17_Chr2g0326621 33.862 189 111 5 59 234 84 271 3.31e-21 90.5
Msa0489330 MtrunA17_Chr1g0199731 31.628 215 126 6 53 250 76 286 3.85e-20 87.4
Msa0489330 MtrunA17_Chr4g0001121 54.412 68 31 0 168 235 10 77 4.96e-20 82.4
Msa0489330 MtrunA17_Chr7g0222791 31.963 219 135 3 25 232 20 235 8.15e-20 85.9
Msa0489330 MtrunA17_Chr5g0397391 31.771 192 118 4 54 232 84 275 2.47e-19 85.1
Msa0489330 MtrunA17_Chr7g0264111 32.308 195 112 5 59 237 82 272 2.52e-19 85.1
Msa0489330 MtrunA17_Chr5g0436701 28.700 223 140 4 25 231 58 277 3.06e-18 82.4
Msa0489330 MtrunA17_Chr4g0029071 30.208 192 114 5 59 234 82 269 1.07e-17 80.5
Msa0489330 MtrunA17_Chr4g0001151 44.361 133 55 4 39 169 1 116 1.49e-17 80.9
Msa0489330 MtrunA17_Chr8g0386961 30.729 192 120 4 54 232 84 275 1.66e-17 80.1
Msa0489330 MtrunA17_Chr3g0113211 29.101 189 115 4 59 231 92 277 9.93e-17 78.2
Msa0489330 MtrunA17_Chr4g0020781 33.333 162 105 3 73 232 32 192 2.62e-16 75.5
Msa0489330 MtrunA17_Chr4g0006001 27.803 223 137 7 30 232 60 278 8.64e-16 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0489330 AT5G37820.1 62.083 240 81 2 16 254 33 263 2.14e-104 305
Msa0489330 AT5G37820.2 62.083 240 81 2 16 254 69 299 3.76e-104 305
Msa0489330 AT5G37810.1 60.246 244 94 2 16 258 33 274 1.65e-101 297
Msa0489330 AT4G18910.1 55.217 230 95 2 22 243 48 277 2.76e-84 254
Msa0489330 AT1G31885.1 47.581 248 120 3 22 261 39 284 3.00e-76 234
Msa0489330 AT4G19030.1 49.130 230 109 2 22 243 51 280 3.14e-74 228
Msa0489330 AT1G31885.2 48.707 232 109 3 38 261 1 230 4.01e-71 219
Msa0489330 AT2G34390.1 42.969 256 135 4 13 258 33 287 3.55e-67 210
Msa0489330 AT2G34390.2 43.333 240 127 3 27 258 7 245 5.28e-65 203
Msa0489330 AT4G18910.2 52.571 175 75 2 22 188 48 222 4.18e-56 179
Msa0489330 AT1G80760.1 44.651 215 117 2 22 235 76 289 1.28e-51 171
Msa0489330 AT4G10380.1 41.304 230 126 4 22 249 74 296 2.11e-48 162
Msa0489330 AT4G19030.3 45.402 174 87 2 22 187 51 224 5.74e-48 159
Msa0489330 AT2G34390.3 41.398 186 98 4 13 188 33 217 1.65e-43 147
Msa0489330 AT4G19030.2 46.452 155 75 2 22 168 51 205 5.98e-43 146
Msa0489330 AT2G34390.4 42.604 169 86 4 13 171 33 200 6.80e-40 138
Msa0489330 AT3G06100.1 35.321 218 138 3 25 240 45 261 3.78e-38 135
Msa0489330 AT3G06100.2 35.681 213 134 3 30 240 2 213 1.05e-37 132
Msa0489330 AT3G16240.1 36.530 219 125 7 25 232 18 233 2.32e-27 106
Msa0489330 AT3G26520.1 38.288 222 121 8 25 234 21 238 1.04e-26 104
Msa0489330 AT1G17810.1 34.348 230 124 6 25 234 23 245 1.21e-26 104
Msa0489330 AT1G73190.1 34.310 239 130 8 25 243 23 254 2.05e-26 104
Msa0489330 AT2G29870.1 50.526 95 47 0 142 236 22 116 4.11e-26 100
Msa0489330 AT4G17340.1 33.188 229 144 4 25 244 18 246 1.91e-25 101
Msa0489330 AT2G25810.1 32.510 243 148 5 25 262 18 249 4.13e-25 100
Msa0489330 AT5G47450.1 34.199 231 144 4 22 244 15 245 4.87e-25 100
Msa0489330 AT4G01470.1 33.333 231 116 6 25 232 20 235 3.62e-24 97.8
Msa0489330 AT2G16850.1 30.800 250 154 7 20 251 30 278 1.06e-23 97.4
Msa0489330 AT1G31885.3 45.122 82 44 1 22 102 39 120 1.42e-22 90.9
Msa0489330 AT2G36830.1 35.160 219 128 6 25 232 20 235 1.30e-21 91.3
Msa0489330 AT3G06100.3 34.507 142 91 2 101 241 41 181 7.08e-21 87.8
Msa0489330 AT1G01620.2 32.474 194 117 5 54 234 12 204 1.06e-19 85.1
Msa0489330 AT4G35100.1 32.812 192 115 5 59 237 75 265 1.27e-19 86.3
Msa0489330 AT4G35100.2 32.812 192 115 5 59 237 75 265 1.27e-19 86.3
Msa0489330 AT5G60660.1 32.178 202 116 5 53 237 76 273 2.09e-19 85.9
Msa0489330 AT1G01620.1 32.474 194 117 5 54 234 84 276 2.34e-19 85.5
Msa0489330 AT3G54820.1 31.731 208 121 6 59 249 81 284 2.69e-19 85.5
Msa0489330 AT3G53420.1 31.343 201 118 5 53 237 76 272 4.00e-19 85.1
Msa0489330 AT3G53420.2 31.343 201 118 5 53 237 76 272 4.00e-19 85.1
Msa0489330 AT4G00430.1 32.292 192 116 5 54 232 85 275 4.43e-19 84.7
Msa0489330 AT2G37170.1 31.343 201 118 5 53 237 74 270 1.29e-18 83.6
Msa0489330 AT2G37170.2 29.461 241 140 6 23 237 77 313 1.37e-18 84.0
Msa0489330 AT3G47440.1 30.137 219 128 7 30 232 27 236 5.09e-18 81.6
Msa0489330 AT2G37180.1 29.046 241 141 6 23 237 34 270 5.41e-18 82.0
Msa0489330 AT3G61430.2 31.606 193 114 5 54 231 84 273 7.26e-18 81.6
Msa0489330 AT3G61430.1 31.606 193 114 5 54 231 84 273 7.26e-18 81.6
Msa0489330 AT4G23400.1 31.034 203 128 4 54 244 85 287 8.89e-18 81.3
Msa0489330 AT2G39010.1 29.665 209 129 4 41 237 69 271 2.07e-17 80.5
Msa0489330 AT2G45960.1 30.570 193 116 5 54 231 84 273 7.95e-17 78.6
Msa0489330 AT2G45960.2 29.940 167 102 4 54 208 84 247 9.09e-13 67.0
Msa0489330 AT2G45960.3 29.940 167 102 4 54 208 84 247 1.02e-12 67.0

Find 55 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATATTGTTGGTCCAATTAT+TGG 0.162167 3_4:-9602480 Msa0489330:CDS
TTCATTGCTGGGCCTGTATC+AGG 0.233946 3_4:-9602573 Msa0489330:CDS
CCAGCTATGGCTCCAATAAT+TGG 0.252991 3_4:+9602468 None:intergenic
TAAATATGTATTACAATTGC+AGG 0.326908 3_4:+9602519 None:intergenic
TGCTGATCTAAGAAAGTTAT+AGG 0.335340 3_4:+9602437 None:intergenic
TACATTGTTGCTCAATTACT+TGG 0.343466 3_4:-9602813 Msa0489330:CDS
ATCACACCCGAATCTTATTT+CGG 0.354797 3_4:-9602750 Msa0489330:CDS
TTCCAGGGATTTGTATCACT+TGG 0.358323 3_4:-9602956 Msa0489330:CDS
GCAGGACCAATACTTCTTGC+TGG 0.368004 3_4:+9602537 None:intergenic
TTCATAGATGCTCCTGATAC+AGG 0.392349 3_4:+9602561 None:intergenic
TCCAGGGATTTGTATCACTT+GGG 0.395736 3_4:-9602955 Msa0489330:CDS
TCTGCTATTGTCTCTGAAGC+TGG 0.412277 3_4:+9602408 None:intergenic
CCAATTATTGGAGCCATAGC+TGG 0.416211 3_4:-9602468 Msa0489330:CDS
TTTCTAGTGTTTGCTGGTTG+TGG 0.424447 3_4:-9603017 Msa0489330:CDS
ATCTTATTTCGGAACAGTAC+CGG 0.428414 3_4:-9602739 Msa0489330:CDS
TACTGTTCCGAAATAAGATT+CGG 0.431345 3_4:+9602743 None:intergenic
ACAGTACCGGTCGGATCAAA+TGG 0.438105 3_4:-9602726 Msa0489330:CDS
TACTCCGTTGGTCATATCTC+TGG 0.449191 3_4:-9602909 Msa0489330:CDS
TGAAACATTGTTGTTCATCA+AGG 0.453880 3_4:-9603091 Msa0489330:CDS
CCAGGGATTTGTATCACTTG+GGG 0.463243 3_4:-9602954 Msa0489330:CDS
TCTGCTGTTAATTCTGAAGT+TGG 0.471889 3_4:+9602381 None:intergenic
ATGAACAACAATGTTTCAAG+AGG 0.474822 3_4:+9603096 None:intergenic
TGTAATAACCTTGATACAAA+AGG 0.475051 3_4:-9603066 Msa0489330:CDS
AAATGGTCAATCTTTAGTGT+TGG 0.484202 3_4:-9602709 Msa0489330:CDS
AAGGTGACTGCAGAAGTTAT+TGG 0.491369 3_4:-9603047 Msa0489330:CDS
ACTGTTCCGAAATAAGATTC+GGG 0.493250 3_4:+9602744 None:intergenic
ACCCTGCTGTTACAATCACC+TGG 0.496483 3_4:-9602875 Msa0489330:CDS
TGATAGAGCGGTCGATGACT+CGG 0.499012 3_4:-9602634 Msa0489330:CDS
GCCCAGGTGATTGTAACAGC+AGG 0.500454 3_4:+9602873 None:intergenic
ATGAATCCAGCAAGAAGTAT+TGG 0.512100 3_4:-9602543 Msa0489330:CDS
GGATTGTGGATATATATTGT+TGG 0.522254 3_4:-9602492 Msa0489330:CDS
TACATATTTACAAAGGATTG+TGG 0.529405 3_4:-9602506 Msa0489330:CDS
ACATTGTTGCTCAATTACTT+GGG 0.530403 3_4:-9602812 Msa0489330:CDS
GACTCGGCAAGTATTGCAGT+TGG 0.544686 3_4:-9602618 Msa0489330:CDS
CAGGGATTTGTATCACTTGG+GGG 0.545559 3_4:-9602953 Msa0489330:CDS
ATAGGCAAGTGCTCCAGCTA+TGG 0.547527 3_4:+9602455 None:intergenic
CCCCAAGTGATACAAATCCC+TGG 0.552028 3_4:+9602954 None:intergenic
GATTGACCATTTGATCCGAC+CGG 0.564200 3_4:+9602720 None:intergenic
TCAATGGCAATAAAACATCA+AGG 0.580804 3_4:-9603128 Msa0489330:CDS
TCCGTTGGTCATATCTCTGG+AGG 0.584856 3_4:-9602906 Msa0489330:CDS
ATTGTAATACATATTTACAA+AGG 0.588504 3_4:-9602513 Msa0489330:CDS
TTGTAACAGCAGGGTTGAAG+AGG 0.589344 3_4:+9602883 None:intergenic
ACAGTCATGTGTTACTCCGT+TGG 0.600056 3_4:-9602921 Msa0489330:CDS
CCCTGCTGTTACAATCACCT+GGG 0.604644 3_4:-9602874 Msa0489330:CDS
ACCTACACAATGTTCTCTGA+AGG 0.609197 3_4:+9602351 None:intergenic
CCCAGGTGATTGTAACAGCA+GGG 0.612416 3_4:+9602874 None:intergenic
TACACAATGTTCTCTGAAGG+TGG 0.619523 3_4:+9602354 None:intergenic
GTAGCAATAAATAAGATACA+TGG 0.620958 3_4:-9602990 Msa0489330:CDS
TGAACAACAATGTTTCAAGA+GGG 0.621482 3_4:+9603097 None:intergenic
GCCTCCAGAGATATGACCAA+CGG 0.643828 3_4:+9602905 None:intergenic
GATGCGACGAAAGATAGCCC+AGG 0.654187 3_4:+9602857 None:intergenic
AATTGAGCAACAATGTACAA+AGG 0.662807 3_4:+9602819 None:intergenic
ACCTTCAGAGAACATTGTGT+AGG 0.675859 3_4:-9602352 None:intergenic
TATTTCGGAACAGTACCGGT+CGG 0.685297 3_4:-9602735 Msa0489330:CDS
TGTTACTACAGATGATAGAG+CGG 0.715844 3_4:-9602646 Msa0489330:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTGTAATACATATTTACAA+AGG - chr3_4:9602965-9602984 Msa0489330:CDS 15.0%
!! ATTGTAATACATATTTACAA+AGG - chr3_4:9602965-9602984 Msa0489330:CDS 15.0%
!! TAAATATGTATTACAATTGC+AGG + chr3_4:9602962-9602981 None:intergenic 20.0%
!! TAAATATGTATTACAATTGC+AGG + chr3_4:9602962-9602981 None:intergenic 20.0%
! TGTAATAACCTTGATACAAA+AGG - chr3_4:9602412-9602431 Msa0489330:CDS 25.0%
! GTAGCAATAAATAAGATACA+TGG - chr3_4:9602488-9602507 Msa0489330:CDS 25.0%
! TACATATTTACAAAGGATTG+TGG - chr3_4:9602972-9602991 Msa0489330:CDS 25.0%
! TATATTGTTGGTCCAATTAT+TGG - chr3_4:9602998-9603017 Msa0489330:CDS 25.0%
! TGTAATAACCTTGATACAAA+AGG - chr3_4:9602412-9602431 Msa0489330:CDS 25.0%
! GTAGCAATAAATAAGATACA+TGG - chr3_4:9602488-9602507 Msa0489330:CDS 25.0%
! TACATATTTACAAAGGATTG+TGG - chr3_4:9602972-9602991 Msa0489330:CDS 25.0%
! TATATTGTTGGTCCAATTAT+TGG - chr3_4:9602998-9603017 Msa0489330:CDS 25.0%
TGAACAACAATGTTTCAAGA+GGG + chr3_4:9602384-9602403 None:intergenic 30.0%
ATGAACAACAATGTTTCAAG+AGG + chr3_4:9602385-9602404 None:intergenic 30.0%
! TGAAACATTGTTGTTCATCA+AGG - chr3_4:9602387-9602406 Msa0489330:CDS 30.0%
!! ACATATTTTCTAGTGTTTGC+TGG - chr3_4:9602455-9602474 Msa0489330:CDS 30.0%
AATTGAGCAACAATGTACAA+AGG + chr3_4:9602662-9602681 None:intergenic 30.0%
TACATTGTTGCTCAATTACT+TGG - chr3_4:9602665-9602684 Msa0489330:CDS 30.0%
ACATTGTTGCTCAATTACTT+GGG - chr3_4:9602666-9602685 Msa0489330:CDS 30.0%
TACTGTTCCGAAATAAGATT+CGG + chr3_4:9602738-9602757 None:intergenic 30.0%
AAATGGTCAATCTTTAGTGT+TGG - chr3_4:9602769-9602788 Msa0489330:CDS 30.0%
! ACATTGAATCTTTTCATTGC+TGG - chr3_4:9602893-9602912 Msa0489330:CDS 30.0%
! CATTGAATCTTTTCATTGCT+GGG - chr3_4:9602894-9602913 Msa0489330:CDS 30.0%
GGATTGTGGATATATATTGT+TGG - chr3_4:9602986-9603005 Msa0489330:CDS 30.0%
TGCTGATCTAAGAAAGTTAT+AGG + chr3_4:9603044-9603063 None:intergenic 30.0%
TGAACAACAATGTTTCAAGA+GGG + chr3_4:9602384-9602403 None:intergenic 30.0%
ATGAACAACAATGTTTCAAG+AGG + chr3_4:9602385-9602404 None:intergenic 30.0%
! TGAAACATTGTTGTTCATCA+AGG - chr3_4:9602387-9602406 Msa0489330:CDS 30.0%
!! ACATATTTTCTAGTGTTTGC+TGG - chr3_4:9602455-9602474 Msa0489330:CDS 30.0%
AATTGAGCAACAATGTACAA+AGG + chr3_4:9602662-9602681 None:intergenic 30.0%
TACATTGTTGCTCAATTACT+TGG - chr3_4:9602665-9602684 Msa0489330:CDS 30.0%
ACATTGTTGCTCAATTACTT+GGG - chr3_4:9602666-9602685 Msa0489330:CDS 30.0%
TACTGTTCCGAAATAAGATT+CGG + chr3_4:9602738-9602757 None:intergenic 30.0%
AAATGGTCAATCTTTAGTGT+TGG - chr3_4:9602769-9602788 Msa0489330:CDS 30.0%
! ACATTGAATCTTTTCATTGC+TGG - chr3_4:9602893-9602912 Msa0489330:CDS 30.0%
! CATTGAATCTTTTCATTGCT+GGG - chr3_4:9602894-9602913 Msa0489330:CDS 30.0%
GGATTGTGGATATATATTGT+TGG - chr3_4:9602986-9603005 Msa0489330:CDS 30.0%
TGCTGATCTAAGAAAGTTAT+AGG + chr3_4:9603044-9603063 None:intergenic 30.0%
! ATCACACCCGAATCTTATTT+CGG - chr3_4:9602728-9602747 Msa0489330:CDS 35.0%
ACTGTTCCGAAATAAGATTC+GGG + chr3_4:9602737-9602756 None:intergenic 35.0%
! ATCTTATTTCGGAACAGTAC+CGG - chr3_4:9602739-9602758 Msa0489330:CDS 35.0%
TGTTACTACAGATGATAGAG+CGG - chr3_4:9602832-9602851 Msa0489330:CDS 35.0%
! ATGAATCCAGCAAGAAGTAT+TGG - chr3_4:9602935-9602954 Msa0489330:CDS 35.0%
!! TCTGCTGTTAATTCTGAAGT+TGG + chr3_4:9603100-9603119 None:intergenic 35.0%
! ATCACACCCGAATCTTATTT+CGG - chr3_4:9602728-9602747 Msa0489330:CDS 35.0%
ACTGTTCCGAAATAAGATTC+GGG + chr3_4:9602737-9602756 None:intergenic 35.0%
! ATCTTATTTCGGAACAGTAC+CGG - chr3_4:9602739-9602758 Msa0489330:CDS 35.0%
TGTTACTACAGATGATAGAG+CGG - chr3_4:9602832-9602851 Msa0489330:CDS 35.0%
! ATGAATCCAGCAAGAAGTAT+TGG - chr3_4:9602935-9602954 Msa0489330:CDS 35.0%
!! TCTGCTGTTAATTCTGAAGT+TGG + chr3_4:9603100-9603119 None:intergenic 35.0%
! TGCAGTCACCTTTTGTATCA+AGG + chr3_4:9602423-9602442 None:intergenic 40.0%
AAGGTGACTGCAGAAGTTAT+TGG - chr3_4:9602431-9602450 Msa0489330:CDS 40.0%
! TTTCTAGTGTTTGCTGGTTG+TGG - chr3_4:9602461-9602480 Msa0489330:CDS 40.0%
!! ATGGCTCTATCACTTTTCCA+GGG - chr3_4:9602507-9602526 Msa0489330:CDS 40.0%
TTCCAGGGATTTGTATCACT+TGG - chr3_4:9602522-9602541 Msa0489330:CDS 40.0%
TCCAGGGATTTGTATCACTT+GGG - chr3_4:9602523-9602542 Msa0489330:CDS 40.0%
TTCATAGATGCTCCTGATAC+AGG + chr3_4:9602920-9602939 None:intergenic 40.0%
! TACACAATGTTCTCTGAAGG+TGG + chr3_4:9603127-9603146 None:intergenic 40.0%
! TGCAGTCACCTTTTGTATCA+AGG + chr3_4:9602423-9602442 None:intergenic 40.0%
AAGGTGACTGCAGAAGTTAT+TGG - chr3_4:9602431-9602450 Msa0489330:CDS 40.0%
! TTTCTAGTGTTTGCTGGTTG+TGG - chr3_4:9602461-9602480 Msa0489330:CDS 40.0%
!! ATGGCTCTATCACTTTTCCA+GGG - chr3_4:9602507-9602526 Msa0489330:CDS 40.0%
TTCCAGGGATTTGTATCACT+TGG - chr3_4:9602522-9602541 Msa0489330:CDS 40.0%
TCCAGGGATTTGTATCACTT+GGG - chr3_4:9602523-9602542 Msa0489330:CDS 40.0%
TTCATAGATGCTCCTGATAC+AGG + chr3_4:9602920-9602939 None:intergenic 40.0%
! TACACAATGTTCTCTGAAGG+TGG + chr3_4:9603127-9603146 None:intergenic 40.0%
!! CATGGCTCTATCACTTTTCC+AGG - chr3_4:9602506-9602525 Msa0489330:CDS 45.0%
CCAGGGATTTGTATCACTTG+GGG - chr3_4:9602524-9602543 Msa0489330:CDS 45.0%
CAGGGATTTGTATCACTTGG+GGG - chr3_4:9602525-9602544 Msa0489330:CDS 45.0%
! ACAGTCATGTGTTACTCCGT+TGG - chr3_4:9602557-9602576 Msa0489330:CDS 45.0%
TACTCCGTTGGTCATATCTC+TGG - chr3_4:9602569-9602588 Msa0489330:CDS 45.0%
TTGTAACAGCAGGGTTGAAG+AGG + chr3_4:9602598-9602617 None:intergenic 45.0%
!! TATTTCGGAACAGTACCGGT+CGG - chr3_4:9602743-9602762 Msa0489330:CDS 45.0%
GATTGACCATTTGATCCGAC+CGG + chr3_4:9602761-9602780 None:intergenic 45.0%
CCAGCTATGGCTCCAATAAT+TGG + chr3_4:9603013-9603032 None:intergenic 45.0%
CCAATTATTGGAGCCATAGC+TGG - chr3_4:9603010-9603029 Msa0489330:CDS 45.0%
!! TCTGCTATTGTCTCTGAAGC+TGG + chr3_4:9603073-9603092 None:intergenic 45.0%
!! CATGGCTCTATCACTTTTCC+AGG - chr3_4:9602506-9602525 Msa0489330:CDS 45.0%
CCAGGGATTTGTATCACTTG+GGG - chr3_4:9602524-9602543 Msa0489330:CDS 45.0%
CAGGGATTTGTATCACTTGG+GGG - chr3_4:9602525-9602544 Msa0489330:CDS 45.0%
! ACAGTCATGTGTTACTCCGT+TGG - chr3_4:9602557-9602576 Msa0489330:CDS 45.0%
TACTCCGTTGGTCATATCTC+TGG - chr3_4:9602569-9602588 Msa0489330:CDS 45.0%
TTGTAACAGCAGGGTTGAAG+AGG + chr3_4:9602598-9602617 None:intergenic 45.0%
!! TATTTCGGAACAGTACCGGT+CGG - chr3_4:9602743-9602762 Msa0489330:CDS 45.0%
GATTGACCATTTGATCCGAC+CGG + chr3_4:9602761-9602780 None:intergenic 45.0%
CCAGCTATGGCTCCAATAAT+TGG + chr3_4:9603013-9603032 None:intergenic 45.0%
CCAATTATTGGAGCCATAGC+TGG - chr3_4:9603010-9603029 Msa0489330:CDS 45.0%
!! TCTGCTATTGTCTCTGAAGC+TGG + chr3_4:9603073-9603092 None:intergenic 45.0%
CCCCAAGTGATACAAATCCC+TGG + chr3_4:9602527-9602546 None:intergenic 50.0%
TCCGTTGGTCATATCTCTGG+AGG - chr3_4:9602572-9602591 Msa0489330:CDS 50.0%
GCCTCCAGAGATATGACCAA+CGG + chr3_4:9602576-9602595 None:intergenic 50.0%
ACCCTGCTGTTACAATCACC+TGG - chr3_4:9602603-9602622 Msa0489330:CDS 50.0%
CCCAGGTGATTGTAACAGCA+GGG + chr3_4:9602607-9602626 None:intergenic 50.0%
CCCTGCTGTTACAATCACCT+GGG - chr3_4:9602604-9602623 Msa0489330:CDS 50.0%
!! ACAGTACCGGTCGGATCAAA+TGG - chr3_4:9602752-9602771 Msa0489330:CDS 50.0%
TGATAGAGCGGTCGATGACT+CGG - chr3_4:9602844-9602863 Msa0489330:CDS 50.0%
! GACTCGGCAAGTATTGCAGT+TGG - chr3_4:9602860-9602879 Msa0489330:CDS 50.0%
TTCATTGCTGGGCCTGTATC+AGG - chr3_4:9602905-9602924 Msa0489330:CDS 50.0%
GCAGGACCAATACTTCTTGC+TGG + chr3_4:9602944-9602963 None:intergenic 50.0%
ATAGGCAAGTGCTCCAGCTA+TGG + chr3_4:9603026-9603045 None:intergenic 50.0%
CCCCAAGTGATACAAATCCC+TGG + chr3_4:9602527-9602546 None:intergenic 50.0%
TCCGTTGGTCATATCTCTGG+AGG - chr3_4:9602572-9602591 Msa0489330:CDS 50.0%
GCCTCCAGAGATATGACCAA+CGG + chr3_4:9602576-9602595 None:intergenic 50.0%
ACCCTGCTGTTACAATCACC+TGG - chr3_4:9602603-9602622 Msa0489330:CDS 50.0%
CCCAGGTGATTGTAACAGCA+GGG + chr3_4:9602607-9602626 None:intergenic 50.0%
CCCTGCTGTTACAATCACCT+GGG - chr3_4:9602604-9602623 Msa0489330:CDS 50.0%
!! ACAGTACCGGTCGGATCAAA+TGG - chr3_4:9602752-9602771 Msa0489330:CDS 50.0%
TGATAGAGCGGTCGATGACT+CGG - chr3_4:9602844-9602863 Msa0489330:CDS 50.0%
! GACTCGGCAAGTATTGCAGT+TGG - chr3_4:9602860-9602879 Msa0489330:CDS 50.0%
TTCATTGCTGGGCCTGTATC+AGG - chr3_4:9602905-9602924 Msa0489330:CDS 50.0%
GCAGGACCAATACTTCTTGC+TGG + chr3_4:9602944-9602963 None:intergenic 50.0%
ATAGGCAAGTGCTCCAGCTA+TGG + chr3_4:9603026-9603045 None:intergenic 50.0%
GCCCAGGTGATTGTAACAGC+AGG + chr3_4:9602608-9602627 None:intergenic 55.0%
GATGCGACGAAAGATAGCCC+AGG + chr3_4:9602624-9602643 None:intergenic 55.0%
GCCCAGGTGATTGTAACAGC+AGG + chr3_4:9602608-9602627 None:intergenic 55.0%
GATGCGACGAAAGATAGCCC+AGG + chr3_4:9602624-9602643 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 9602353 9603147 9602353 ID=Msa0489330;Name=Msa0489330
chr3_4 mRNA 9602353 9603147 9602353 ID=Msa0489330-mRNA-1;Parent=Msa0489330;Name=Msa0489330-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|264
chr3_4 exon 9602353 9603147 9602353 ID=Msa0489330-mRNA-1:exon:3132;Parent=Msa0489330-mRNA-1
chr3_4 CDS 9602353 9603147 9602353 ID=Msa0489330-mRNA-1:cds;Parent=Msa0489330-mRNA-1
Gene Sequence

>Msa0489330

ATGGCAATAAAACATCAAGGAAACAATTCCCTCTTGAAACATTGTTGTTCATCAAGGCGTGTAATAACCTTGATACAAAAGGTGACTGCAGAAGTTATTGGCACATATTTTCTAGTGTTTGCTGGTTGTGGTGCTGTAGCAATAAATAAGATACATGGCTCTATCACTTTTCCAGGGATTTGTATCACTTGGGGGTTGATTGTAACAGTCATGTGTTACTCCGTTGGTCATATCTCTGGAGGCCTCTTCAACCCTGCTGTTACAATCACCTGGGCTATCTTTCGTCGCATCACGATTAAAGAAGCTCCTTTGTACATTGTTGCTCAATTACTTGGGTCTACACTTGCAAGTGTAACATTATCTCTAATGTTTGATATCACACCCGAATCTTATTTCGGAACAGTACCGGTCGGATCAAATGGTCAATCTTTAGTGTTGGAAATCATTATCAGTTTTCTCTTAATGTTTGTCATTTCAGCTGTTACTACAGATGATAGAGCGGTCGATGACTCGGCAAGTATTGCAGTTGGAATGACTTTAACATTGAATCTTTTCATTGCTGGGCCTGTATCAGGAGCATCTATGAATCCAGCAAGAAGTATTGGTCCTGCAATTGTAATACATATTTACAAAGGATTGTGGATATATATTGTTGGTCCAATTATTGGAGCCATAGCTGGAGCACTTGCCTATAACTTTCTTAGATCAGCATACAAGCCAGCTTCAGAGACAATAGCAGACAAACCAACTTCAGAATTAACAGCAGACAAGCCACCTTCAGAGAACATTGTGTAG

Protein sequence

>Msa0489330

MAIKHQGNNSLLKHCCSSRRVITLIQKVTAEVIGTYFLVFAGCGAVAINKIHGSITFPGICITWGLIVTVMCYSVGHISGGLFNPAVTITWAIFRRITIKEAPLYIVAQLLGSTLASVTLSLMFDITPESYFGTVPVGSNGQSLVLEIIISFLLMFVISAVTTDDRAVDDSASIAVGMTLTLNLFIAGPVSGASMNPARSIGPAIVIHIYKGLWIYIVGPIIGAIAGALAYNFLRSAYKPASETIADKPTSELTADKPPSENIV*