AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0755550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0755550 MtrunA17_Chr5g0400431 99.398 166 1 0 1 166 1 166 1.08e-120 337
Msa0755550 MtrunA17_Chr4g0043711 59.880 167 54 3 1 166 1 155 2.23e-69 207
Msa0755550 MtrunA17_Chr7g0260591 66.038 53 16 1 64 114 3 55 9.13e-17 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0755550 AT1G32470.1 83.133 166 28 0 1 166 1 166 4.86e-94 270
Msa0755550 AT2G35370.1 83.133 166 27 1 1 166 1 165 2.33e-89 258
Msa0755550 AT2G35120.1 58.929 168 55 3 1 166 1 156 1.58e-64 195

Find 56 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAAATTAATTTCAATATA+TGG 0.157093 5_2:-9386567 Msa0755550:exon
ATACATCCAAGATAATATTT+TGG 0.203698 5_2:-9388047 Msa0755550:five_prime_UTR
GTAACTGAACCGCCAGGTTC+TGG 0.305688 5_2:+9387167 None:intergenic
TGAAATTAATTTCAATATAT+GGG 0.339204 5_2:-9386566 Msa0755550:three_prime_UTR
ATCATCCATCCATCTTCATA+TGG 0.339685 5_2:+9386680 None:intergenic
GTTACAAAGGGTAACGGTTT+CGG 0.348504 5_2:-9387149 Msa0755550:CDS
AAACATCTGGAGATGGAAAA+AGG 0.352185 5_2:+9387810 None:intergenic
TCAACAATCTCACCAGATAT+TGG 0.373303 5_2:+9387086 None:intergenic
ATCTCCAGATGTTTCTCAAC+TGG 0.379569 5_2:-9387801 Msa0755550:intron
TCTTGGAGAGGTTGTGTTTG+TGG 0.407524 5_2:-9387195 Msa0755550:CDS
CGGAGCTGTTGAAAGTGTTA+AGG 0.409242 5_2:-9387129 Msa0755550:CDS
GATGTAAACTCTCCAATATC+TGG 0.410884 5_2:-9387098 Msa0755550:CDS
ATCTGAATTAGAAGCCTTGT+TGG 0.425384 5_2:-9386636 Msa0755550:CDS
AAAATATTATCTTGGATGTA+TGG 0.426151 5_2:+9388049 None:intergenic
AGTATGCATCTTCACATGAA+TGG 0.426720 5_2:-9387677 Msa0755550:CDS
TAACAATGGCACTGAGGATG+TGG 0.446358 5_2:-9387896 Msa0755550:exon
AGAAGAGAGTTTGAGAGCAT+TGG 0.453540 5_2:+9387860 None:intergenic
GATAAGCTCACCGGAAAACC+TGG 0.464278 5_2:-9387056 Msa0755550:CDS
TGTTGGTTGCAGGACCATCT+TGG 0.467787 5_2:-9387212 Msa0755550:intron
GAAGGCTCAGTAGCCACTAT+TGG 0.468590 5_2:-9387645 Msa0755550:CDS
TGAAATTATGAGATAGATAG+AGG 0.482873 5_2:+9387988 None:intergenic
TCTGAATTAGAAGCCTTGTT+GGG 0.485713 5_2:-9386635 Msa0755550:CDS
TCATCCATCCATCTTCATAT+GGG 0.487407 5_2:+9386681 None:intergenic
GTATGCATCTTCACATGAAT+GGG 0.495142 5_2:-9387676 Msa0755550:CDS
GATACCAGTTGAGAAACATC+TGG 0.497324 5_2:+9387797 None:intergenic
AGAAGCCTTGTTGGGTGCAA+AGG 0.506140 5_2:-9386627 Msa0755550:CDS
AATGAATGAATTACCAGGCC+AGG 0.510526 5_2:+9387038 None:intergenic
TTTGTGGAGCTTCCAGAACC+TGG 0.512073 5_2:-9387179 Msa0755550:CDS
TCTAATTCAGATGGATCACT+TGG 0.513292 5_2:+9386647 None:intergenic
TGGTATCACTGACCATGCTC+AGG 0.528384 5_2:-9387625 Msa0755550:intron
GCTCACCGGAAAACCTGGCC+TGG 0.529026 5_2:-9387051 Msa0755550:intron
AACTCAAGCCCATATGAAGA+TGG 0.530377 5_2:-9386689 Msa0755550:CDS
AGGGGAGAGATGTAATCTTG+AGG 0.555174 5_2:+9387833 None:intergenic
CATGAATGGGTGAAGCATGA+AGG 0.562003 5_2:-9387663 Msa0755550:CDS
CCCTTTGTAACTGAACCGCC+AGG 0.564034 5_2:+9387161 None:intergenic
CAAGCCCATATGAAGATGGA+TGG 0.567565 5_2:-9386685 Msa0755550:CDS
AACAAGGCTTCTAATTCAGA+TGG 0.567704 5_2:+9386638 None:intergenic
ACCTGGCGGTTCAGTTACAA+AGG 0.580268 5_2:-9387162 Msa0755550:CDS
AGTTGAGAAACATCTGGAGA+TGG 0.581853 5_2:+9387803 None:intergenic
GTTGCAGGACCATCTTGGAG+AGG 0.582318 5_2:-9387207 Msa0755550:intron
GGTTCAGTTACAAAGGGTAA+CGG 0.588941 5_2:-9387155 Msa0755550:CDS
CAAACACAACCTCTCCAAGA+TGG 0.593260 5_2:+9387198 None:intergenic
GAGGTTAATGATAAGCTCAC+CGG 0.595144 5_2:-9387065 Msa0755550:CDS
AATATCTGGTGAGATTGTTG+AGG 0.595757 5_2:-9387084 Msa0755550:CDS
AACAATGGCACTGAGGATGT+GGG 0.614850 5_2:-9387895 Msa0755550:exon
CCTGGCGGTTCAGTTACAAA+GGG 0.619186 5_2:-9387161 Msa0755550:CDS
TGTCGGTAACAATAATAGCA+AGG 0.624071 5_2:+9386456 None:intergenic
ATGGTCAGTGATACCAATAG+TGG 0.628719 5_2:+9387632 None:intergenic
GTACTCCTTTGCACCCAACA+AGG 0.634212 5_2:+9386622 None:intergenic
GTGTTGGTGTAAAGTAAAAG+AGG 0.635428 5_2:-9388112 None:intergenic
GAGTGCACAAATAAAAGATG+AGG 0.636975 5_2:-9388085 Msa0755550:five_prime_UTR
AGCAAAAGTAGTCTTAACAA+TGG 0.640990 5_2:-9387910 Msa0755550:exon
GCAGTTAACTAACCTGAGCA+TGG 0.648601 5_2:+9387613 None:intergenic
AGACTGACACACTAAAGTGT+CGG 0.671974 5_2:+9386439 None:intergenic
GTGGAGCTTCCAGAACCTGG+CGG 0.691995 5_2:-9387176 Msa0755550:CDS
TAGTCTTAACAATGGCACTG+AGG 0.723094 5_2:-9387902 Msa0755550:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGAAATTAATTTCAATATA+TGG - chr5_2:9387931-9387950 Msa0755550:intron 10.0%
!! TGAAATTAATTTCAATATAT+GGG - chr5_2:9387932-9387951 Msa0755550:intron 10.0%
!! TTGAAATTAATTTCAATATA+TGG - chr5_2:9387931-9387950 Msa0755550:intron 10.0%
!! TGAAATTAATTTCAATATAT+GGG - chr5_2:9387932-9387951 Msa0755550:intron 10.0%
!! AAAATATTATCTTGGATGTA+TGG + chr5_2:9386452-9386471 None:intergenic 20.0%
!!! ATACATCCAAGATAATATTT+TGG - chr5_2:9386451-9386470 Msa0755550:three_prime_UTR 20.0%
!!! TACATCCAAGATAATATTTT+GGG - chr5_2:9386452-9386471 Msa0755550:three_prime_UTR 20.0%
!!! TAAATAAATTTTTGCAGTGT+TGG - chr5_2:9386789-9386808 Msa0755550:intron 20.0%
!! TGAATTAGACTTTAATTACT+AGG - chr5_2:9387097-9387116 Msa0755550:CDS 20.0%
!! GTACATTTATGAAAAATAAG+CGG - chr5_2:9387627-9387646 Msa0755550:CDS 20.0%
!! AAAATATTATCTTGGATGTA+TGG + chr5_2:9386452-9386471 None:intergenic 20.0%
!!! ATACATCCAAGATAATATTT+TGG - chr5_2:9386451-9386470 Msa0755550:three_prime_UTR 20.0%
!!! TACATCCAAGATAATATTTT+GGG - chr5_2:9386452-9386471 Msa0755550:three_prime_UTR 20.0%
!!! TAAATAAATTTTTGCAGTGT+TGG - chr5_2:9386789-9386808 Msa0755550:intron 20.0%
!! TGAATTAGACTTTAATTACT+AGG - chr5_2:9387097-9387116 Msa0755550:CDS 20.0%
!! GTACATTTATGAAAAATAAG+CGG - chr5_2:9387627-9387646 Msa0755550:CDS 20.0%
!! CTTTTCCCAAAATATTATCT+TGG + chr5_2:9386460-9386479 None:intergenic 25.0%
!!! CAAGATAATATTTTGGGAAA+AGG - chr5_2:9386458-9386477 Msa0755550:three_prime_UTR 25.0%
! TGAAATTATGAGATAGATAG+AGG + chr5_2:9386513-9386532 None:intergenic 25.0%
!!! TATACGAATTAGTCTGTTTT+TGG - chr5_2:9386996-9387015 Msa0755550:intron 25.0%
!!! ATACGAATTAGTCTGTTTTT+GGG - chr5_2:9386997-9387016 Msa0755550:intron 25.0%
!! GCTAGTATTTTATCTTTTGT+CGG + chr5_2:9387197-9387216 None:intergenic 25.0%
! AATCATTACAACTTAAGTGA+AGG - chr5_2:9387238-9387257 Msa0755550:intron 25.0%
! GTTTAATTAATTGCACTTGT+TGG - chr5_2:9387269-9387288 Msa0755550:intron 25.0%
!!! ATTAACTCACTCTCATTTTT+AGG - chr5_2:9387480-9387499 Msa0755550:intron 25.0%
!! CTTTTCCCAAAATATTATCT+TGG + chr5_2:9386460-9386479 None:intergenic 25.0%
!!! CAAGATAATATTTTGGGAAA+AGG - chr5_2:9386458-9386477 Msa0755550:three_prime_UTR 25.0%
! TGAAATTATGAGATAGATAG+AGG + chr5_2:9386513-9386532 None:intergenic 25.0%
!!! TATACGAATTAGTCTGTTTT+TGG - chr5_2:9386996-9387015 Msa0755550:intron 25.0%
!!! ATACGAATTAGTCTGTTTTT+GGG - chr5_2:9386997-9387016 Msa0755550:intron 25.0%
!! GCTAGTATTTTATCTTTTGT+CGG + chr5_2:9387197-9387216 None:intergenic 25.0%
! AATCATTACAACTTAAGTGA+AGG - chr5_2:9387238-9387257 Msa0755550:intron 25.0%
! GTTTAATTAATTGCACTTGT+TGG - chr5_2:9387269-9387288 Msa0755550:intron 25.0%
!!! ATTAACTCACTCTCATTTTT+AGG - chr5_2:9387480-9387499 Msa0755550:intron 25.0%
! AGCAAAAGTAGTCTTAACAA+TGG - chr5_2:9386588-9386607 Msa0755550:CDS 30.0%
! AAAAGGAGGGTATATATGAA+AGG + chr5_2:9386726-9386745 None:intergenic 30.0%
CATTCAACTTGATAGGAAAA+AGG + chr5_2:9386743-9386762 None:intergenic 30.0%
!! TAAATTTTTGCAGTGTTGGA+TGG - chr5_2:9386793-9386812 Msa0755550:intron 30.0%
ACATATTGTGGAGAATGTTA+AGG + chr5_2:9386920-9386939 None:intergenic 30.0%
ATTGAGCTAAGAGTTAAATG+AGG - chr5_2:9387150-9387169 Msa0755550:CDS 30.0%
GAGTTAATGAATGAATTACC+AGG + chr5_2:9387468-9387487 None:intergenic 30.0%
! AGCAAAAGTAGTCTTAACAA+TGG - chr5_2:9386588-9386607 Msa0755550:CDS 30.0%
! AAAAGGAGGGTATATATGAA+AGG + chr5_2:9386726-9386745 None:intergenic 30.0%
CATTCAACTTGATAGGAAAA+AGG + chr5_2:9386743-9386762 None:intergenic 30.0%
!! TAAATTTTTGCAGTGTTGGA+TGG - chr5_2:9386793-9386812 Msa0755550:intron 30.0%
ACATATTGTGGAGAATGTTA+AGG + chr5_2:9386920-9386939 None:intergenic 30.0%
ATTGAGCTAAGAGTTAAATG+AGG - chr5_2:9387150-9387169 Msa0755550:CDS 30.0%
GAGTTAATGAATGAATTACC+AGG + chr5_2:9387468-9387487 None:intergenic 30.0%
GAGTGCACAAATAAAAGATG+AGG - chr5_2:9386413-9386432 Msa0755550:three_prime_UTR 35.0%
AAACATCTGGAGATGGAAAA+AGG + chr5_2:9386691-9386710 None:intergenic 35.0%
CAACTTGATAGGAAAAAGGA+GGG + chr5_2:9386739-9386758 None:intergenic 35.0%
TCAACTTGATAGGAAAAAGG+AGG + chr5_2:9386740-9386759 None:intergenic 35.0%
CCACATTCATTCAACTTGAT+AGG + chr5_2:9386750-9386769 None:intergenic 35.0%
!! CCTATCAAGTTGAATGAATG+TGG - chr5_2:9386747-9386766 Msa0755550:intron 35.0%
AGTATGCATCTTCACATGAA+TGG - chr5_2:9386821-9386840 Msa0755550:intron 35.0%
GTATGCATCTTCACATGAAT+GGG - chr5_2:9386822-9386841 Msa0755550:intron 35.0%
!!! GAATTAGTCTGTTTTTGGGT+CGG - chr5_2:9387001-9387020 Msa0755550:intron 35.0%
GATGTAAACTCTCCAATATC+TGG - chr5_2:9387400-9387419 Msa0755550:intron 35.0%
TCAACAATCTCACCAGATAT+TGG + chr5_2:9387415-9387434 None:intergenic 35.0%
AATATCTGGTGAGATTGTTG+AGG - chr5_2:9387414-9387433 Msa0755550:intron 35.0%
TGAAGACATAAGTGAACTAG+AGG - chr5_2:9387603-9387622 Msa0755550:intron 35.0%
GAAGACATAAGTGAACTAGA+GGG - chr5_2:9387604-9387623 Msa0755550:intron 35.0%
AAGACATAAGTGAACTAGAG+GGG - chr5_2:9387605-9387624 Msa0755550:intron 35.0%
TCATCCATCCATCTTCATAT+GGG + chr5_2:9387820-9387839 None:intergenic 35.0%
ATCATCCATCCATCTTCATA+TGG + chr5_2:9387821-9387840 None:intergenic 35.0%
TCTAATTCAGATGGATCACT+TGG + chr5_2:9387854-9387873 None:intergenic 35.0%
AACAAGGCTTCTAATTCAGA+TGG + chr5_2:9387863-9387882 None:intergenic 35.0%
! ATCTGAATTAGAAGCCTTGT+TGG - chr5_2:9387862-9387881 Msa0755550:CDS 35.0%
!! TCTGAATTAGAAGCCTTGTT+GGG - chr5_2:9387863-9387882 Msa0755550:CDS 35.0%
! GGAGTACACAAAATTTTGTG+AGG - chr5_2:9387892-9387911 Msa0755550:CDS 35.0%
TGTCGGTAACAATAATAGCA+AGG + chr5_2:9388045-9388064 None:intergenic 35.0%
GAGTGCACAAATAAAAGATG+AGG - chr5_2:9386413-9386432 Msa0755550:three_prime_UTR 35.0%
AAACATCTGGAGATGGAAAA+AGG + chr5_2:9386691-9386710 None:intergenic 35.0%
CAACTTGATAGGAAAAAGGA+GGG + chr5_2:9386739-9386758 None:intergenic 35.0%
TCAACTTGATAGGAAAAAGG+AGG + chr5_2:9386740-9386759 None:intergenic 35.0%
CCACATTCATTCAACTTGAT+AGG + chr5_2:9386750-9386769 None:intergenic 35.0%
!! CCTATCAAGTTGAATGAATG+TGG - chr5_2:9386747-9386766 Msa0755550:intron 35.0%
AGTATGCATCTTCACATGAA+TGG - chr5_2:9386821-9386840 Msa0755550:intron 35.0%
GTATGCATCTTCACATGAAT+GGG - chr5_2:9386822-9386841 Msa0755550:intron 35.0%
!!! GAATTAGTCTGTTTTTGGGT+CGG - chr5_2:9387001-9387020 Msa0755550:intron 35.0%
GATGTAAACTCTCCAATATC+TGG - chr5_2:9387400-9387419 Msa0755550:intron 35.0%
TCAACAATCTCACCAGATAT+TGG + chr5_2:9387415-9387434 None:intergenic 35.0%
AATATCTGGTGAGATTGTTG+AGG - chr5_2:9387414-9387433 Msa0755550:intron 35.0%
TGAAGACATAAGTGAACTAG+AGG - chr5_2:9387603-9387622 Msa0755550:intron 35.0%
GAAGACATAAGTGAACTAGA+GGG - chr5_2:9387604-9387623 Msa0755550:intron 35.0%
AAGACATAAGTGAACTAGAG+GGG - chr5_2:9387605-9387624 Msa0755550:intron 35.0%
TCATCCATCCATCTTCATAT+GGG + chr5_2:9387820-9387839 None:intergenic 35.0%
ATCATCCATCCATCTTCATA+TGG + chr5_2:9387821-9387840 None:intergenic 35.0%
TCTAATTCAGATGGATCACT+TGG + chr5_2:9387854-9387873 None:intergenic 35.0%
AACAAGGCTTCTAATTCAGA+TGG + chr5_2:9387863-9387882 None:intergenic 35.0%
! ATCTGAATTAGAAGCCTTGT+TGG - chr5_2:9387862-9387881 Msa0755550:CDS 35.0%
!! TCTGAATTAGAAGCCTTGTT+GGG - chr5_2:9387863-9387882 Msa0755550:CDS 35.0%
! GGAGTACACAAAATTTTGTG+AGG - chr5_2:9387892-9387911 Msa0755550:CDS 35.0%
TGTCGGTAACAATAATAGCA+AGG + chr5_2:9388045-9388064 None:intergenic 35.0%
! TAGTCTTAACAATGGCACTG+AGG - chr5_2:9386596-9386615 Msa0755550:CDS 40.0%
! AGAAGAGAGTTTGAGAGCAT+TGG + chr5_2:9386641-9386660 None:intergenic 40.0%
ATCTGGAGATGGAAAAAGGA+GGG + chr5_2:9386687-9386706 None:intergenic 40.0%
AGTTGAGAAACATCTGGAGA+TGG + chr5_2:9386698-9386717 None:intergenic 40.0%
ATCTCCAGATGTTTCTCAAC+TGG - chr5_2:9386697-9386716 Msa0755550:intron 40.0%
GATACCAGTTGAGAAACATC+TGG + chr5_2:9386704-9386723 None:intergenic 40.0%
ATGGTCAGTGATACCAATAG+TGG + chr5_2:9386869-9386888 None:intergenic 40.0%
TGGAGAATGTTAAGGAGTAG+AGG + chr5_2:9386912-9386931 None:intergenic 40.0%
AATCTCACAGTTCACTTGTG+GGG + chr5_2:9386972-9386991 None:intergenic 40.0%
CAATCTCACAGTTCACTTGT+GGG + chr5_2:9386973-9386992 None:intergenic 40.0%
TCAATCTCACAGTTCACTTG+TGG + chr5_2:9386974-9386993 None:intergenic 40.0%
! TAATTGCACTTGTTGGTTGC+AGG - chr5_2:9387276-9387295 Msa0755550:intron 40.0%
GGTTCAGTTACAAAGGGTAA+CGG - chr5_2:9387343-9387362 Msa0755550:intron 40.0%
! GTTACAAAGGGTAACGGTTT+CGG - chr5_2:9387349-9387368 Msa0755550:intron 40.0%
GAGGTTAATGATAAGCTCAC+CGG - chr5_2:9387433-9387452 Msa0755550:intron 40.0%
AATGAATGAATTACCAGGCC+AGG + chr5_2:9387463-9387482 None:intergenic 40.0%
AACTCAAGCCCATATGAAGA+TGG - chr5_2:9387809-9387828 Msa0755550:CDS 40.0%
AGACTGACACACTAAAGTGT+CGG + chr5_2:9388062-9388081 None:intergenic 40.0%
! TAGTCTTAACAATGGCACTG+AGG - chr5_2:9386596-9386615 Msa0755550:CDS 40.0%
! AGAAGAGAGTTTGAGAGCAT+TGG + chr5_2:9386641-9386660 None:intergenic 40.0%
ATCTGGAGATGGAAAAAGGA+GGG + chr5_2:9386687-9386706 None:intergenic 40.0%
AGTTGAGAAACATCTGGAGA+TGG + chr5_2:9386698-9386717 None:intergenic 40.0%
ATCTCCAGATGTTTCTCAAC+TGG - chr5_2:9386697-9386716 Msa0755550:intron 40.0%
GATACCAGTTGAGAAACATC+TGG + chr5_2:9386704-9386723 None:intergenic 40.0%
ATGGTCAGTGATACCAATAG+TGG + chr5_2:9386869-9386888 None:intergenic 40.0%
TGGAGAATGTTAAGGAGTAG+AGG + chr5_2:9386912-9386931 None:intergenic 40.0%
AATCTCACAGTTCACTTGTG+GGG + chr5_2:9386972-9386991 None:intergenic 40.0%
CAATCTCACAGTTCACTTGT+GGG + chr5_2:9386973-9386992 None:intergenic 40.0%
TCAATCTCACAGTTCACTTG+TGG + chr5_2:9386974-9386993 None:intergenic 40.0%
! TAATTGCACTTGTTGGTTGC+AGG - chr5_2:9387276-9387295 Msa0755550:intron 40.0%
GGTTCAGTTACAAAGGGTAA+CGG - chr5_2:9387343-9387362 Msa0755550:intron 40.0%
! GTTACAAAGGGTAACGGTTT+CGG - chr5_2:9387349-9387368 Msa0755550:intron 40.0%
GAGGTTAATGATAAGCTCAC+CGG - chr5_2:9387433-9387452 Msa0755550:intron 40.0%
AATGAATGAATTACCAGGCC+AGG + chr5_2:9387463-9387482 None:intergenic 40.0%
AACTCAAGCCCATATGAAGA+TGG - chr5_2:9387809-9387828 Msa0755550:CDS 40.0%
AGACTGACACACTAAAGTGT+CGG + chr5_2:9388062-9388081 None:intergenic 40.0%
! TAACAATGGCACTGAGGATG+TGG - chr5_2:9386602-9386621 Msa0755550:CDS 45.0%
! AACAATGGCACTGAGGATGT+GGG - chr5_2:9386603-9386622 Msa0755550:CDS 45.0%
AGGGGAGAGATGTAATCTTG+AGG + chr5_2:9386668-9386687 None:intergenic 45.0%
TCTGGAGATGGAAAAAGGAG+GGG + chr5_2:9386686-9386705 None:intergenic 45.0%
CATCTGGAGATGGAAAAAGG+AGG + chr5_2:9386688-9386707 None:intergenic 45.0%
CATGAATGGGTGAAGCATGA+AGG - chr5_2:9386835-9386854 Msa0755550:intron 45.0%
GCAGTTAACTAACCTGAGCA+TGG + chr5_2:9386888-9386907 None:intergenic 45.0%
CGCTTTGCATGGACATATTG+TGG + chr5_2:9386932-9386951 None:intergenic 45.0%
!! CAAAGCGCTCTGGCTTTAAA+TGG - chr5_2:9386945-9386964 Msa0755550:intron 45.0%
ATCTCACAGTTCACTTGTGG+GGG + chr5_2:9386971-9386990 None:intergenic 45.0%
CAAACACAACCTCTCCAAGA+TGG + chr5_2:9387303-9387322 None:intergenic 45.0%
TCTTGGAGAGGTTGTGTTTG+TGG - chr5_2:9387303-9387322 Msa0755550:intron 45.0%
!! CGGAGCTGTTGAAAGTGTTA+AGG - chr5_2:9387369-9387388 Msa0755550:intron 45.0%
! AATTACCAGGCCAGGTTTTC+CGG + chr5_2:9387455-9387474 None:intergenic 45.0%
CAAGCCCATATGAAGATGGA+TGG - chr5_2:9387813-9387832 Msa0755550:CDS 45.0%
! TAACAATGGCACTGAGGATG+TGG - chr5_2:9386602-9386621 Msa0755550:CDS 45.0%
! AACAATGGCACTGAGGATGT+GGG - chr5_2:9386603-9386622 Msa0755550:CDS 45.0%
AGGGGAGAGATGTAATCTTG+AGG + chr5_2:9386668-9386687 None:intergenic 45.0%
TCTGGAGATGGAAAAAGGAG+GGG + chr5_2:9386686-9386705 None:intergenic 45.0%
CATCTGGAGATGGAAAAAGG+AGG + chr5_2:9386688-9386707 None:intergenic 45.0%
CATGAATGGGTGAAGCATGA+AGG - chr5_2:9386835-9386854 Msa0755550:intron 45.0%
GCAGTTAACTAACCTGAGCA+TGG + chr5_2:9386888-9386907 None:intergenic 45.0%
CGCTTTGCATGGACATATTG+TGG + chr5_2:9386932-9386951 None:intergenic 45.0%
!! CAAAGCGCTCTGGCTTTAAA+TGG - chr5_2:9386945-9386964 Msa0755550:intron 45.0%
ATCTCACAGTTCACTTGTGG+GGG + chr5_2:9386971-9386990 None:intergenic 45.0%
CAAACACAACCTCTCCAAGA+TGG + chr5_2:9387303-9387322 None:intergenic 45.0%
TCTTGGAGAGGTTGTGTTTG+TGG - chr5_2:9387303-9387322 Msa0755550:intron 45.0%
!! CGGAGCTGTTGAAAGTGTTA+AGG - chr5_2:9387369-9387388 Msa0755550:intron 45.0%
! AATTACCAGGCCAGGTTTTC+CGG + chr5_2:9387455-9387474 None:intergenic 45.0%
CAAGCCCATATGAAGATGGA+TGG - chr5_2:9387813-9387832 Msa0755550:CDS 45.0%
GAAGGCTCAGTAGCCACTAT+TGG - chr5_2:9386853-9386872 Msa0755550:intron 50.0%
TGGTATCACTGACCATGCTC+AGG - chr5_2:9386873-9386892 Msa0755550:intron 50.0%
! TATGTCCATGCAAAGCGCTC+TGG - chr5_2:9386935-9386954 Msa0755550:intron 50.0%
! TAAAGCCAGAGCGCTTTGCA+TGG + chr5_2:9386943-9386962 None:intergenic 50.0%
! TGTTGGTTGCAGGACCATCT+TGG - chr5_2:9387286-9387305 Msa0755550:intron 50.0%
TTTGTGGAGCTTCCAGAACC+TGG - chr5_2:9387319-9387338 Msa0755550:intron 50.0%
ACCTGGCGGTTCAGTTACAA+AGG - chr5_2:9387336-9387355 Msa0755550:intron 50.0%
CCTGGCGGTTCAGTTACAAA+GGG - chr5_2:9387337-9387356 Msa0755550:intron 50.0%
GATAAGCTCACCGGAAAACC+TGG - chr5_2:9387442-9387461 Msa0755550:intron 50.0%
!! AGAAGCCTTGTTGGGTGCAA+AGG - chr5_2:9387871-9387890 Msa0755550:CDS 50.0%
GTACTCCTTTGCACCCAACA+AGG + chr5_2:9387879-9387898 None:intergenic 50.0%
GAAGGCTCAGTAGCCACTAT+TGG - chr5_2:9386853-9386872 Msa0755550:intron 50.0%
TGGTATCACTGACCATGCTC+AGG - chr5_2:9386873-9386892 Msa0755550:intron 50.0%
! TATGTCCATGCAAAGCGCTC+TGG - chr5_2:9386935-9386954 Msa0755550:intron 50.0%
! TAAAGCCAGAGCGCTTTGCA+TGG + chr5_2:9386943-9386962 None:intergenic 50.0%
! TGTTGGTTGCAGGACCATCT+TGG - chr5_2:9387286-9387305 Msa0755550:intron 50.0%
TTTGTGGAGCTTCCAGAACC+TGG - chr5_2:9387319-9387338 Msa0755550:intron 50.0%
ACCTGGCGGTTCAGTTACAA+AGG - chr5_2:9387336-9387355 Msa0755550:intron 50.0%
CCTGGCGGTTCAGTTACAAA+GGG - chr5_2:9387337-9387356 Msa0755550:intron 50.0%
GATAAGCTCACCGGAAAACC+TGG - chr5_2:9387442-9387461 Msa0755550:intron 50.0%
!! AGAAGCCTTGTTGGGTGCAA+AGG - chr5_2:9387871-9387890 Msa0755550:CDS 50.0%
GTACTCCTTTGCACCCAACA+AGG + chr5_2:9387879-9387898 None:intergenic 50.0%
GTTGCAGGACCATCTTGGAG+AGG - chr5_2:9387291-9387310 Msa0755550:intron 55.0%
GTAACTGAACCGCCAGGTTC+TGG + chr5_2:9387334-9387353 None:intergenic 55.0%
CCCTTTGTAACTGAACCGCC+AGG + chr5_2:9387340-9387359 None:intergenic 55.0%
GTTGCAGGACCATCTTGGAG+AGG - chr5_2:9387291-9387310 Msa0755550:intron 55.0%
GTAACTGAACCGCCAGGTTC+TGG + chr5_2:9387334-9387353 None:intergenic 55.0%
CCCTTTGTAACTGAACCGCC+AGG + chr5_2:9387340-9387359 None:intergenic 55.0%
GTGGAGCTTCCAGAACCTGG+CGG - chr5_2:9387322-9387341 Msa0755550:intron 60.0%
GTGGAGCTTCCAGAACCTGG+CGG - chr5_2:9387322-9387341 Msa0755550:intron 60.0%
GCTCACCGGAAAACCTGGCC+TGG - chr5_2:9387447-9387466 Msa0755550:intron 65.0%
GCTCACCGGAAAACCTGGCC+TGG - chr5_2:9387447-9387466 Msa0755550:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 9386399 9388121 9386399 ID=Msa0755550;Name=Msa0755550
chr5_2 mRNA 9386399 9388121 9386399 ID=Msa0755550-mRNA-1;Parent=Msa0755550;Name=Msa0755550-mRNA-1;_AED=0.10;_eAED=0.10;_QI=187|1|1|1|0.75|0.6|5|187|166
chr5_2 exon 9386399 9386714 9386399 ID=Msa0755550-mRNA-1:exon:4364;Parent=Msa0755550-mRNA-1
chr5_2 exon 9387052 9387222 9387052 ID=Msa0755550-mRNA-1:exon:4363;Parent=Msa0755550-mRNA-1
chr5_2 exon 9387626 9387714 9387626 ID=Msa0755550-mRNA-1:exon:4362;Parent=Msa0755550-mRNA-1
chr5_2 exon 9387802 9387943 9387802 ID=Msa0755550-mRNA-1:exon:4361;Parent=Msa0755550-mRNA-1
chr5_2 exon 9387965 9388121 9387965 ID=Msa0755550-mRNA-1:exon:4360;Parent=Msa0755550-mRNA-1
chr5_2 five_prime_UTR 9387965 9388121 9387965 ID=Msa0755550-mRNA-1:five_prime_utr;Parent=Msa0755550-mRNA-1
chr5_2 five_prime_UTR 9387914 9387943 9387914 ID=Msa0755550-mRNA-1:five_prime_utr;Parent=Msa0755550-mRNA-1
chr5_2 CDS 9387802 9387913 9387802 ID=Msa0755550-mRNA-1:cds;Parent=Msa0755550-mRNA-1
chr5_2 CDS 9387626 9387714 9387626 ID=Msa0755550-mRNA-1:cds;Parent=Msa0755550-mRNA-1
chr5_2 CDS 9387052 9387222 9387052 ID=Msa0755550-mRNA-1:cds;Parent=Msa0755550-mRNA-1
chr5_2 CDS 9386586 9386714 9386586 ID=Msa0755550-mRNA-1:cds;Parent=Msa0755550-mRNA-1
chr5_2 three_prime_UTR 9386399 9386585 9386399 ID=Msa0755550-mRNA-1:three_prime_utr;Parent=Msa0755550-mRNA-1
Gene Sequence

>Msa0755550

ATGGCACTGAGGATGTGGGCTTCTTCAACTGCCAATGCTCTCAAACTCTCTTCTTCTTCCTCAAGATTACATCTCTCCCCTCCTTTTTCCATCTCCAGATGTTTCTCAACTGTGTTGGATGGACTCAAGTATGCATCTTCACATGAATGGGTGAAGCATGAAGGCTCAGTAGCCACTATTGGTATCACTGACCATGCTCAGGACCATCTTGGAGAGGTTGTGTTTGTGGAGCTTCCAGAACCTGGCGGTTCAGTTACAAAGGGTAACGGTTTCGGAGCTGTTGAAAGTGTTAAGGCAACAAGTGATGTAAACTCTCCAATATCTGGTGAGATTGTTGAGGTTAATGATAAGCTCACCGGAAAACCTGGCCTGATCAACTCAAGCCCATATGAAGATGGATGGATGATCAAAATAAAGCCAAGTGATCCATCTGAATTAGAAGCCTTGTTGGGTGCAAAGGAGTACACAAAATTTTGTGAGGAAGAAGATGCTGCACATTGA

Protein sequence

>Msa0755550

MALRMWASSTANALKLSSSSSRLHLSPPFSISRCFSTVLDGLKYASSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEPGGSVTKGNGFGAVESVKATSDVNSPISGEIVEVNDKLTGKPGLINSSPYEDGWMIKIKPSDPSELEALLGAKEYTKFCEEEDAAH*