AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1250500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1250500 MtrunA17_Chr4g0054701 98.052 154 1 1 1 152 1 154 4.14e-104 294
Msa1250500 MtrunA17_Chr8g0381011 73.451 113 30 0 29 141 2 114 4.27e-56 173
Msa1250500 MtrunA17_Chr8g0381011 49.333 75 37 1 23 97 35 108 4.65e-14 65.9
Msa1250500 MtrunA17_Chr2g0303181 58.621 116 45 1 29 141 2 117 3.40e-46 148
Msa1250500 MtrunA17_Chr4g0047341 56.000 75 33 0 68 142 40 114 3.96e-23 89.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1250500 AT1G32540.3 87.013 154 16 2 1 151 1 153 2.08e-82 239
Msa1250500 AT1G32540.2 87.013 154 16 2 1 151 1 153 2.08e-82 239
Msa1250500 AT1G32540.1 94.215 121 7 0 28 148 64 184 8.21e-80 234
Msa1250500 AT1G32540.5 89.928 139 11 1 1 136 1 139 6.35e-77 226
Msa1250500 AT1G32540.4 91.954 87 4 1 20 103 20 106 2.02e-50 157
Msa1250500 AT1G32540.6 91.954 87 4 1 20 103 20 106 2.02e-50 157
Msa1250500 AT1G32540.7 97.368 76 2 0 28 103 64 139 2.49e-48 153
Msa1250500 AT4G20380.2 60.484 124 38 3 29 141 7 130 2.57e-41 137
Msa1250500 AT4G20380.7 60.484 124 38 3 29 141 7 130 2.57e-41 137
Msa1250500 AT4G20380.6 60.484 124 38 3 29 141 2 125 3.05e-41 136
Msa1250500 AT4G20380.3 60.484 124 38 3 29 141 2 125 3.05e-41 136
Msa1250500 AT4G20380.4 60.484 124 38 3 29 141 2 125 3.05e-41 136
Msa1250500 AT4G20380.1 60.484 124 38 3 29 141 2 125 3.05e-41 136
Msa1250500 AT4G20380.5 60.484 124 38 3 29 141 2 125 3.05e-41 136
Msa1250500 AT4G20380.9 60.656 122 37 3 29 139 2 123 7.16e-41 134
Msa1250500 AT4G20380.8 50.667 150 37 3 29 141 2 151 9.68e-38 128
Msa1250500 AT4G20380.8 46.154 78 39 1 70 144 4 81 3.75e-15 69.7
Msa1250500 AT4G21610.1 55.294 85 35 1 67 148 57 141 2.31e-27 100
Msa1250500 AT4G21610.2 60.274 73 29 0 67 139 57 129 3.32e-26 97.1

Find 66 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAAATTCTTCTTCACTTC+TGG 0.143177 8_2:-46222339 Msa1250500:five_prime_UTR
CCTTTGACTCTCACTTTATC+TGG 0.202596 8_2:-46222263 Msa1250500:five_prime_UTR
AAAGGTCCAAGTACAGTAAA+AGG 0.221457 8_2:-46220188 Msa1250500:three_prime_UTR
TTATTTCTTTCACATACTTT+TGG 0.252427 8_2:-46220226 Msa1250500:three_prime_UTR
TTTGTTCTGTTTGTAGAATT+TGG 0.262955 8_2:-46222097 Msa1250500:five_prime_UTR
TATTGAGTTATGTGTGATAA+AGG 0.287226 8_2:+46222392 None:intergenic
GTACTTAAATATCAATCTTA+AGG 0.309191 8_2:-46220515 Msa1250500:three_prime_UTR
AACGTTTACTCTCATAATAT+TGG 0.313642 8_2:-46222652 None:intergenic
CAGAGTCAACTTGTGTGTTC+TGG 0.355331 8_2:-46221425 Msa1250500:CDS
ATGCTACTTATGTATCAATA+TGG 0.369271 8_2:-46220845 Msa1250500:CDS
TATATCAGTAAGATAACAAC+TGG 0.377081 8_2:-46220146 None:intergenic
AAGTATGTGAAAGAAATAAA+TGG 0.382512 8_2:+46220230 None:intergenic
TTTGTTGGAGGTGTTGTATA+TGG 0.389709 8_2:+46221983 None:intergenic
GTGTATTGTGACAGCAAATC+AGG 0.393093 8_2:-46220897 Msa1250500:intron
GAGAAAAGAAATGGTGGAAA+AGG 0.412620 8_2:+46222518 None:intergenic
ATTGCAAACTGCACATTTCA+CGG 0.413666 8_2:+46220814 None:intergenic
ATTGAGTTATGTGTGATAAA+GGG 0.422105 8_2:+46222393 None:intergenic
GGATAAGGAGCAAGTGGAAC+TGG 0.439901 8_2:+46222034 None:intergenic
AAGGAAACCTTTGAAGCAAA+AGG 0.443679 8_2:+46222217 None:intergenic
CATTACAGACTCTACAACCT+TGG 0.445898 8_2:-46220544 Msa1250500:three_prime_UTR
GCTGGAGGTGGAGTTGGATA+AGG 0.453949 8_2:+46222019 None:intergenic
GCTGGAGCAGGAGCTGGAGG+TGG 0.460297 8_2:+46222007 None:intergenic
CATACAGAAGTGGCTCCAAC+TGG 0.466065 8_2:+46221380 None:intergenic
AAAGTGAAGATACCATTTGT+TGG 0.467296 8_2:+46221968 None:intergenic
GGATGTACATGAGTAAAGTA+TGG 0.469461 8_2:+46221122 None:intergenic
GCAGGAGCTGGAGGTGGAGT+TGG 0.472992 8_2:+46222013 None:intergenic
GTCACAGCAGTGCCACCTCC+TGG 0.473850 8_2:-46221338 Msa1250500:intron
GAAATGGCTCAGTTAGTTTG+TGG 0.475051 8_2:-46221151 Msa1250500:CDS
AAAAGGGTAAAGCAGTCAAA+TGG 0.480658 8_2:-46220171 Msa1250500:three_prime_UTR
TGTATTCACAGGCACAGAAA+TGG 0.480688 8_2:-46221167 Msa1250500:intron
TATGGAGCTGGAGCAGGAGC+TGG 0.484907 8_2:+46222001 None:intergenic
CCAGATAAAGTGAGAGTCAA+AGG 0.509284 8_2:+46222263 None:intergenic
GAGAGAGAGAAAAGAAATGG+TGG 0.510108 8_2:+46222512 None:intergenic
TATACAACACCTCCAACAAA+TGG 0.513032 8_2:-46221980 Msa1250500:intron
GTTGTATATGGAGCTGGAGC+AGG 0.513741 8_2:+46221995 None:intergenic
TCACACAGTCAATCTAGCTC+TGG 0.518089 8_2:-46221068 Msa1250500:CDS
AACCTTCTTATGTATCCAGT+TGG 0.523909 8_2:-46221395 Msa1250500:CDS
GGAGGTGTTGTATATGGAGC+TGG 0.527136 8_2:+46221989 None:intergenic
AAGGTCCAAGTACAGTAAAA+GGG 0.533894 8_2:-46220187 Msa1250500:three_prime_UTR
ATAATAGTATATGATTTATG+AGG 0.535470 8_2:+46220575 None:intergenic
TCTTCCTCCAGCTTCATGCA+TGG 0.537787 8_2:-46222312 Msa1250500:five_prime_UTR
AATACAATCACCGTCACGCA+AGG 0.559660 8_2:+46220433 None:intergenic
TTTGCTAGAAAAGAAAATGA+AGG 0.559817 8_2:-46222622 Msa1250500:five_prime_UTR
ATTTACCTTACCAAAAGATG+TGG 0.560547 8_2:+46220328 None:intergenic
GTGAAGATACCATTTGTTGG+AGG 0.564232 8_2:+46221971 None:intergenic
CTCCAACTGGATACATAAGA+AGG 0.572621 8_2:+46221393 None:intergenic
AAACCTTTGAAGCAAAAGGT+TGG 0.575078 8_2:+46222221 None:intergenic
TGAAAGAAATAAATGGTGCT+TGG 0.582348 8_2:+46220237 None:intergenic
CTGCTCCGTCGTGCTTGCTG+AGG 0.583212 8_2:+46220611 None:intergenic
GGAGTTGGATAAGGAGCAAG+TGG 0.592607 8_2:+46222028 None:intergenic
TATTTCATCATACCAGGAGG+TGG 0.599736 8_2:+46221326 None:intergenic
AACAGCACAGCATACAGAAG+TGG 0.604154 8_2:+46221370 None:intergenic
GGAGCTGGAGCAGGAGCTGG+AGG 0.618511 8_2:+46222004 None:intergenic
ATGGCTCAGTTAGTTTGTGG+AGG 0.620989 8_2:-46221148 Msa1250500:CDS
ATACAATCACCGTCACGCAA+GGG 0.630625 8_2:+46220434 None:intergenic
ACAGTCAATCTAGCTCTGGA+AGG 0.636792 8_2:-46221064 Msa1250500:intron
ATGTCAACTGTGGTAACTGC+AGG 0.637282 8_2:-46220868 Msa1250500:CDS
AAAATAACTCTATACATGTG+AGG 0.644150 8_2:+46220458 None:intergenic
AATCATATACTATTATAGCA+AGG 0.645071 8_2:-46220568 Msa1250500:three_prime_UTR
AAAACCATGCATGAAGCTGG+AGG 0.646121 8_2:+46222308 None:intergenic
AACTATACTGACCCCAACTG+AGG 0.675495 8_2:+46220784 None:intergenic
GCAGGCCTCAGCAAGCACGA+CGG 0.676096 8_2:-46220616 Msa1250500:intron
ATTGAACACTCGTCGCTCCG+CGG 0.692743 8_2:+46221101 None:intergenic
CAGGTAGCACATGTCAACTG+TGG 0.705529 8_2:-46220878 Msa1250500:CDS
ACTTTACTCATGTACATCCG+CGG 0.709515 8_2:-46221118 Msa1250500:CDS
ATGGTGGAAAAGGATATGAG+TGG 0.731997 8_2:+46222528 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATACAAAATTTACTAAA+TGG - chr8_2:46221046-46221065 Msa1250500:intron 10.0%
!!! ATATAATTTTACTTGTACAA+TGG + chr8_2:46220355-46220374 None:intergenic 15.0%
!! ATAATAGTATATGATTTATG+AGG + chr8_2:46222225-46222244 None:intergenic 15.0%
!!! TCTTATTTCTTATCCATATT+TGG - chr8_2:46220948-46220967 Msa1250500:intron 20.0%
!!! ATGTCTAATTTTAGTATTGA+TGG - chr8_2:46220994-46221013 Msa1250500:intron 20.0%
!! ATTCTTAAAACTACAAAGTA+CGG + chr8_2:46221875-46221894 None:intergenic 20.0%
!! AATCATATACTATTATAGCA+AGG - chr8_2:46222229-46222248 Msa1250500:five_prime_UTR 20.0%
!! GTACTTAAATATCAATCTTA+AGG - chr8_2:46222282-46222301 Msa1250500:five_prime_UTR 20.0%
!! AAGTATGTGAAAGAAATAAA+TGG + chr8_2:46222570-46222589 None:intergenic 20.0%
!!! TTATTTCTTTCACATACTTT+TGG - chr8_2:46222571-46222590 Msa1250500:five_prime_UTR 20.0%
!!! TCATTTTCTTTTCTAGCAAA+TGG + chr8_2:46220175-46220194 None:intergenic 25.0%
! TTTGCTAGAAAAGAAAATGA+AGG - chr8_2:46220175-46220194 Msa1250500:three_prime_UTR 25.0%
!!! AGTTTGCTAGAATGAAAAAA+GGG + chr8_2:46220312-46220331 None:intergenic 25.0%
!!! TAGTTTGCTAGAATGAAAAA+AGG + chr8_2:46220313-46220332 None:intergenic 25.0%
! ATTGAGTTATGTGTGATAAA+GGG + chr8_2:46220407-46220426 None:intergenic 25.0%
! TATTGAGTTATGTGTGATAA+AGG + chr8_2:46220408-46220427 None:intergenic 25.0%
!!! ATGCATGGTTTTTTATTTCA+AGG - chr8_2:46220500-46220519 Msa1250500:three_prime_UTR 25.0%
!! AAAAAAGTGATTAACTTGGT+AGG + chr8_2:46220611-46220630 None:intergenic 25.0%
! GGAAAAAAAAGTGATTAACT+TGG + chr8_2:46220615-46220634 None:intergenic 25.0%
! AGTAAAAGATTCATTCAAGA+GGG + chr8_2:46220636-46220655 None:intergenic 25.0%
! TAGTAAAAGATTCATTCAAG+AGG + chr8_2:46220637-46220656 None:intergenic 25.0%
!! ACTATATTTCTTCATTTTCC+AGG - chr8_2:46220653-46220672 Msa1250500:intron 25.0%
! TTTGTTCTGTTTGTAGAATT+TGG - chr8_2:46220700-46220719 Msa1250500:intron 25.0%
!!! TTGATGCATGTTCTTTATTT+TGG - chr8_2:46220879-46220898 Msa1250500:CDS 25.0%
! ACAAAATTTACTAAATGGAG+AGG - chr8_2:46221051-46221070 Msa1250500:intron 25.0%
! TCCAATTTCTTATCAGATAA+AGG - chr8_2:46221085-46221104 Msa1250500:CDS 25.0%
! CCAATTTCTTATCAGATAAA+GGG - chr8_2:46221086-46221105 Msa1250500:CDS 25.0%
!! GCTTTTTGTTAAAATCACAT+AGG + chr8_2:46221228-46221247 None:intergenic 25.0%
!! AAAAATGTTGTTTGAATGCT+AGG - chr8_2:46221345-46221364 Msa1250500:CDS 25.0%
! GTTCAATTGACTAATAAATG+TGG + chr8_2:46221583-46221602 None:intergenic 25.0%
!! ATGCTACTTATGTATCAATA+TGG - chr8_2:46221952-46221971 Msa1250500:intron 25.0%
! TTCTCTTCAAAATAGAAAAG+CGG + chr8_2:46222060-46222079 None:intergenic 25.0%
! TATTTAAGTACCAAAAACCA+AGG + chr8_2:46222273-46222292 None:intergenic 25.0%
! AAAATAACTCTATACATGTG+AGG + chr8_2:46222342-46222361 None:intergenic 25.0%
!!! TTAAGCGTTTTTGTTTGAAT+TGG - chr8_2:46222385-46222404 Msa1250500:five_prime_UTR 25.0%
!!! TTCTACTTTTGTTCAATAAG+TGG - chr8_2:46222498-46222517 Msa1250500:five_prime_UTR 25.0%
GGATGTACACTAAAAAGAAA+TGG + chr8_2:46220251-46220270 None:intergenic 30.0%
CTTAAATTCTTCTTCACTTC+TGG - chr8_2:46220458-46220477 Msa1250500:three_prime_UTR 30.0%
!!! CATGGTTTTTTATTTCAAGG+AGG - chr8_2:46220503-46220522 Msa1250500:three_prime_UTR 30.0%
! ATTAACTTGGTAGGTTGAAA+AGG + chr8_2:46220602-46220621 None:intergenic 30.0%
! TTTTCCAGGAGTTGAAAAAA+TGG - chr8_2:46220667-46220686 Msa1250500:intron 30.0%
TTTCCAGGAGTTGAAAAAAT+GGG - chr8_2:46220668-46220687 Msa1250500:intron 30.0%
AAAGTGAAGATACCATTTGT+TGG + chr8_2:46220832-46220851 None:intergenic 30.0%
ATAAAGAACATGCATCAATG+AGG + chr8_2:46220877-46220896 None:intergenic 30.0%
TACTTTATGCTGATGAATTG+TGG - chr8_2:46220911-46220930 Msa1250500:intron 30.0%
TCTTATCCATATTTGGAAGA+AGG - chr8_2:46220955-46220974 Msa1250500:intron 30.0%
TTTAGTCCTTCTTCCAAATA+TGG + chr8_2:46220964-46220983 None:intergenic 30.0%
CCCTTTATCTGATAAGAAAT+TGG + chr8_2:46221089-46221108 None:intergenic 30.0%
TCTAAACATGCACTAAAGAT+AGG + chr8_2:46221174-46221193 None:intergenic 30.0%
CCATACCATAAAACATTAAG+TGG + chr8_2:46221282-46221301 None:intergenic 30.0%
! CCACTTAATGTTTTATGGTA+TGG - chr8_2:46221279-46221298 Msa1250500:intron 30.0%
! TGTTTTATGGTATGGAAATG+TGG - chr8_2:46221287-46221306 Msa1250500:intron 30.0%
GAAGAATATTTCATCATACC+AGG + chr8_2:46221480-46221499 None:intergenic 30.0%
AGAGACCTAATAACTGATAA+GGG + chr8_2:46221503-46221522 None:intergenic 30.0%
TAGAGACCTAATAACTGATA+AGG + chr8_2:46221504-46221523 None:intergenic 30.0%
ATATCAGAAACTGAAGATTC+AGG + chr8_2:46221557-46221576 None:intergenic 30.0%
!! ATAAGCATTGATGTATTCAC+AGG - chr8_2:46221619-46221638 Msa1250500:intron 30.0%
TCAAAATAGAAAAGCGGAAA+AGG + chr8_2:46222054-46222073 None:intergenic 30.0%
!!! AAACTATGTCTTGTTTTGCA+AGG + chr8_2:46222104-46222123 None:intergenic 30.0%
! TATGCAAAAACCACATCTTT+TGG - chr8_2:46222459-46222478 Msa1250500:five_prime_UTR 30.0%
! AAAAACCACATCTTTTGGTA+AGG - chr8_2:46222464-46222483 Msa1250500:five_prime_UTR 30.0%
ATTTACCTTACCAAAAGATG+TGG + chr8_2:46222472-46222491 None:intergenic 30.0%
TGAAAGAAATAAATGGTGCT+TGG + chr8_2:46222563-46222582 None:intergenic 30.0%
! GAGAAAAGAAATGGTGGAAA+AGG + chr8_2:46220282-46220301 None:intergenic 35.0%
TAAAAAACCATGCATGAAGC+TGG + chr8_2:46220495-46220514 None:intergenic 35.0%
!! AAACCTTTGAAGCAAAAGGT+TGG + chr8_2:46220579-46220598 None:intergenic 35.0%
!! AAGGAAACCTTTGAAGCAAA+AGG + chr8_2:46220583-46220602 None:intergenic 35.0%
!! TTTGTTGGAGGTGTTGTATA+TGG + chr8_2:46220817-46220836 None:intergenic 35.0%
TATACAACACCTCCAACAAA+TGG - chr8_2:46220817-46220836 Msa1250500:CDS 35.0%
TTATGCTGATGAATTGTGGT+TGG - chr8_2:46220915-46220934 Msa1250500:intron 35.0%
TCAGATAAAGGGAGATATGT+TGG - chr8_2:46221097-46221116 Msa1250500:CDS 35.0%
!!! CAGTGCCACTTAATGTTTTA+TGG - chr8_2:46221274-46221293 Msa1250500:intron 35.0%
AACCTTCTTATGTATCCAGT+TGG - chr8_2:46221402-46221421 Msa1250500:CDS 35.0%
GAATATTTCATCATACCAGG+AGG + chr8_2:46221477-46221496 None:intergenic 35.0%
TCTTCCCCTTATCAGTTATT+AGG - chr8_2:46221495-46221514 Msa1250500:intron 35.0%
GAGACCTAATAACTGATAAG+GGG + chr8_2:46221502-46221521 None:intergenic 35.0%
GGATGTACATGAGTAAAGTA+TGG + chr8_2:46221678-46221697 None:intergenic 35.0%
CGAGTTAAATTGCTGTGATT+CGG - chr8_2:46221846-46221865 Msa1250500:intron 35.0%
ATTGCAAACTGCACATTTCA+CGG + chr8_2:46221986-46222005 None:intergenic 35.0%
! TGCAATTTTGTTACCTCAGT+TGG - chr8_2:46222000-46222019 Msa1250500:CDS 35.0%
! GCAATTTTGTTACCTCAGTT+GGG - chr8_2:46222001-46222020 Msa1250500:CDS 35.0%
! CAATTTTGTTACCTCAGTTG+GGG - chr8_2:46222002-46222021 Msa1250500:CDS 35.0%
! ATGTTACTGAATGATGATGC+AGG - chr8_2:46222163-46222182 Msa1250500:intron 35.0%
!! CTGCTATATTTTTGTGTGTG+TGG - chr8_2:46222533-46222552 Msa1250500:five_prime_UTR 35.0%
!! TTCACATACTTTTGGCCTTT+TGG - chr8_2:46222579-46222598 Msa1250500:five_prime_UTR 35.0%
!! TGGCCTTTTGGAAATAGAAA+AGG - chr8_2:46222591-46222610 Msa1250500:five_prime_UTR 35.0%
! GGACCTTTTCTATTTCCAAA+AGG + chr8_2:46222597-46222616 None:intergenic 35.0%
AAAGGTCCAAGTACAGTAAA+AGG - chr8_2:46222609-46222628 Msa1250500:five_prime_UTR 35.0%
AAGGTCCAAGTACAGTAAAA+GGG - chr8_2:46222610-46222629 Msa1250500:five_prime_UTR 35.0%
! CTTTACCCTTTTACTGTACT+TGG + chr8_2:46222618-46222637 None:intergenic 35.0%
AAAAGGGTAAAGCAGTCAAA+TGG - chr8_2:46222626-46222645 Msa1250500:five_prime_UTR 35.0%
! ATGGTGGAAAAGGATATGAG+TGG + chr8_2:46220272-46220291 None:intergenic 40.0%
GAGAGAGAGAAAAGAAATGG+TGG + chr8_2:46220288-46220307 None:intergenic 40.0%
GGAGAGAGAGAGAAAAGAAA+TGG + chr8_2:46220291-46220310 None:intergenic 40.0%
CCAGATAAAGTGAGAGTCAA+AGG + chr8_2:46220537-46220556 None:intergenic 40.0%
CCTTTGACTCTCACTTTATC+TGG - chr8_2:46220534-46220553 Msa1250500:three_prime_UTR 40.0%
! CTACCAACCTTTTGCTTCAA+AGG - chr8_2:46220573-46220592 Msa1250500:exon 40.0%
! GTGAAGATACCATTTGTTGG+AGG + chr8_2:46220829-46220848 None:intergenic 40.0%
GGTTCAAATCTGAGTCTTAG+AGG + chr8_2:46221153-46221172 None:intergenic 40.0%
! ACAGTGAGTTTTGCGAAATC+AGG - chr8_2:46221197-46221216 Msa1250500:intron 40.0%
! CAGTGAGTTTTGCGAAATCA+GGG - chr8_2:46221198-46221217 Msa1250500:intron 40.0%
CTCCAACTGGATACATAAGA+AGG + chr8_2:46221407-46221426 None:intergenic 40.0%
TATTTCATCATACCAGGAGG+TGG + chr8_2:46221474-46221493 None:intergenic 40.0%
TGTATTCACAGGCACAGAAA+TGG - chr8_2:46221630-46221649 Msa1250500:intron 40.0%
! GAAATGGCTCAGTTAGTTTG+TGG - chr8_2:46221646-46221665 Msa1250500:intron 40.0%
ACTTTACTCATGTACATCCG+CGG - chr8_2:46221679-46221698 Msa1250500:intron 40.0%
GTGTATTGTGACAGCAAATC+AGG - chr8_2:46221900-46221919 Msa1250500:intron 40.0%
GAAAAGCGGAAAAGGTAGTA+TGG + chr8_2:46222046-46222065 None:intergenic 40.0%
CATTACAGACTCTACAACCT+TGG - chr8_2:46222253-46222272 Msa1250500:five_prime_UTR 40.0%
!! GACTCTACAACCTTGGTTTT+TGG - chr8_2:46222260-46222279 Msa1250500:five_prime_UTR 40.0%
!!! GTTATTTTTCCCTTGCGTGA+CGG - chr8_2:46222354-46222373 Msa1250500:five_prime_UTR 40.0%
AAAACCATGCATGAAGCTGG+AGG + chr8_2:46220492-46220511 None:intergenic 45.0%
!!! CCACCCATTTTTTCAACTCC+TGG + chr8_2:46220674-46220693 None:intergenic 45.0%
CCAGGAGTTGAAAAAATGGG+TGG - chr8_2:46220671-46220690 Msa1250500:intron 45.0%
CAGAGTCAACTTGTGTGTTC+TGG - chr8_2:46221372-46221391 Msa1250500:CDS 45.0%
AACAGCACAGCATACAGAAG+TGG + chr8_2:46221430-46221449 None:intergenic 45.0%
!! ATGGCTCAGTTAGTTTGTGG+AGG - chr8_2:46221649-46221668 Msa1250500:intron 45.0%
! TCACACAGTCAATCTAGCTC+TGG - chr8_2:46221729-46221748 Msa1250500:intron 45.0%
!! ACAGTCAATCTAGCTCTGGA+AGG - chr8_2:46221733-46221752 Msa1250500:intron 45.0%
ATGTCAACTGTGGTAACTGC+AGG - chr8_2:46221929-46221948 Msa1250500:intron 45.0%
AACTATACTGACCCCAACTG+AGG + chr8_2:46222016-46222035 None:intergenic 45.0%
ATACAATCACCGTCACGCAA+GGG + chr8_2:46222366-46222385 None:intergenic 45.0%
AATACAATCACCGTCACGCA+AGG + chr8_2:46222367-46222386 None:intergenic 45.0%
TCTTCCTCCAGCTTCATGCA+TGG - chr8_2:46220485-46220504 Msa1250500:three_prime_UTR 50.0%
GGATAAGGAGCAAGTGGAAC+TGG + chr8_2:46220766-46220785 None:intergenic 50.0%
GGAGTTGGATAAGGAGCAAG+TGG + chr8_2:46220772-46220791 None:intergenic 50.0%
GTTGTATATGGAGCTGGAGC+AGG + chr8_2:46220805-46220824 None:intergenic 50.0%
!! GGAGGTGTTGTATATGGAGC+TGG + chr8_2:46220811-46220830 None:intergenic 50.0%
CATACAGAAGTGGCTCCAAC+TGG + chr8_2:46221420-46221439 None:intergenic 50.0%
CAGGTAGCACATGTCAACTG+TGG - chr8_2:46221919-46221938 Msa1250500:intron 50.0%
GCTGGAGGTGGAGTTGGATA+AGG + chr8_2:46220781-46220800 None:intergenic 55.0%
ATTGAACACTCGTCGCTCCG+CGG + chr8_2:46221699-46221718 None:intergenic 55.0%
TATGGAGCTGGAGCAGGAGC+TGG + chr8_2:46220799-46220818 None:intergenic 60.0%
GCAGGAGCTGGAGGTGGAGT+TGG + chr8_2:46220787-46220806 None:intergenic 65.0%
GTCACAGCAGTGCCACCTCC+TGG - chr8_2:46221459-46221478 Msa1250500:intron 65.0%
GCAGGCCTCAGCAAGCACGA+CGG - chr8_2:46222181-46222200 Msa1250500:intron 65.0%
! CTGCTCCGTCGTGCTTGCTG+AGG + chr8_2:46222189-46222208 None:intergenic 65.0%
GCTGGAGCAGGAGCTGGAGG+TGG + chr8_2:46220793-46220812 None:intergenic 70.0%
GGAGCTGGAGCAGGAGCTGG+AGG + chr8_2:46220796-46220815 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 46220149 46222670 46220149 ID=Msa1250500;Name=Msa1250500
chr8_2 mRNA 46220149 46222670 46220149 ID=Msa1250500-mRNA-1;Parent=Msa1250500;Name=Msa1250500-mRNA-1;_AED=0.08;_eAED=0.08;_QI=531|1|1|1|0.8|0.66|6|441|153
chr8_2 exon 46220149 46220634 46220149 ID=Msa1250500-mRNA-1:exon:13931;Parent=Msa1250500-mRNA-1
chr8_2 exon 46220796 46220905 46220796 ID=Msa1250500-mRNA-1:exon:13930;Parent=Msa1250500-mRNA-1
chr8_2 exon 46221065 46221178 46221065 ID=Msa1250500-mRNA-1:exon:13929;Parent=Msa1250500-mRNA-1
chr8_2 exon 46221339 46221452 46221339 ID=Msa1250500-mRNA-1:exon:13928;Parent=Msa1250500-mRNA-1
chr8_2 exon 46221981 46222144 46221981 ID=Msa1250500-mRNA-1:exon:13927;Parent=Msa1250500-mRNA-1
chr8_2 exon 46222225 46222670 46222225 ID=Msa1250500-mRNA-1:exon:13926;Parent=Msa1250500-mRNA-1
chr8_2 five_prime_UTR 46222225 46222670 46222225 ID=Msa1250500-mRNA-1:five_prime_utr;Parent=Msa1250500-mRNA-1
chr8_2 five_prime_UTR 46222060 46222144 46222060 ID=Msa1250500-mRNA-1:five_prime_utr;Parent=Msa1250500-mRNA-1
chr8_2 CDS 46221981 46222059 46221981 ID=Msa1250500-mRNA-1:cds;Parent=Msa1250500-mRNA-1
chr8_2 CDS 46221339 46221452 46221339 ID=Msa1250500-mRNA-1:cds;Parent=Msa1250500-mRNA-1
chr8_2 CDS 46221065 46221178 46221065 ID=Msa1250500-mRNA-1:cds;Parent=Msa1250500-mRNA-1
chr8_2 CDS 46220796 46220905 46220796 ID=Msa1250500-mRNA-1:cds;Parent=Msa1250500-mRNA-1
chr8_2 CDS 46220590 46220634 46220590 ID=Msa1250500-mRNA-1:cds;Parent=Msa1250500-mRNA-1
chr8_2 three_prime_UTR 46220149 46220589 46220149 ID=Msa1250500-mRNA-1:three_prime_utr;Parent=Msa1250500-mRNA-1
Gene Sequence

>Msa1250500

ATGCCAGTTCCACTTGCTCCTTATCCAACTCCACCTCCAGCTCCTGCTCCAGCTCCATATACAACACCTCCAACAAATGGTGCACAGAGTCAACTTGTGTGTTCTGGTTGTAGAAACCTTCTTATGTATCCAGTTGGAGCCACTTCTGTATGCTGTGCTGTTTGCAATGCTGTCACAGCAGTGCCACCTCCTGGCACAGAAATGGCTCAGTTAGTTTGTGGAGGATGCCATACTTTACTCATGTACATCCGCGGAGCGACGAGTGTTCAATGCTCTTGTTGTCACACAGTCAATCTAGCTCTGGAAGCAAATCAGGTAGCACATGTCAACTGTGGTAACTGCAGGATGCTACTTATGTATCAATATGGAGCAAGATCCGTGAAATGTGCAGTTTGCAATTTTGTTACCTCAGTTGGGGCCTCAGCAAGCACGACGGAGCAGCAGAAGTTCAGCACCTCATAA

Protein sequence

>Msa1250500

MPVPLAPYPTPPPAPAPAPYTTPPTNGAQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASASTTEQQKFSTS*