AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1426880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1426880 MtrunA17_Chr4g0054701 98.052 154 1 1 1 152 1 154 4.14e-104 294
Msa1426880 MtrunA17_Chr8g0381011 73.451 113 30 0 29 141 2 114 4.27e-56 173
Msa1426880 MtrunA17_Chr8g0381011 49.333 75 37 1 23 97 35 108 4.65e-14 65.9
Msa1426880 MtrunA17_Chr2g0303181 58.621 116 45 1 29 141 2 117 3.40e-46 148
Msa1426880 MtrunA17_Chr4g0047341 56.000 75 33 0 68 142 40 114 3.96e-23 89.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1426880 AT1G32540.3 87.013 154 16 2 1 151 1 153 2.08e-82 239
Msa1426880 AT1G32540.2 87.013 154 16 2 1 151 1 153 2.08e-82 239
Msa1426880 AT1G32540.1 94.215 121 7 0 28 148 64 184 8.21e-80 234
Msa1426880 AT1G32540.5 89.928 139 11 1 1 136 1 139 6.35e-77 226
Msa1426880 AT1G32540.4 91.954 87 4 1 20 103 20 106 2.02e-50 157
Msa1426880 AT1G32540.6 91.954 87 4 1 20 103 20 106 2.02e-50 157
Msa1426880 AT1G32540.7 97.368 76 2 0 28 103 64 139 2.49e-48 153
Msa1426880 AT4G20380.2 60.484 124 38 3 29 141 7 130 2.57e-41 137
Msa1426880 AT4G20380.7 60.484 124 38 3 29 141 7 130 2.57e-41 137
Msa1426880 AT4G20380.6 60.484 124 38 3 29 141 2 125 3.05e-41 136
Msa1426880 AT4G20380.3 60.484 124 38 3 29 141 2 125 3.05e-41 136
Msa1426880 AT4G20380.4 60.484 124 38 3 29 141 2 125 3.05e-41 136
Msa1426880 AT4G20380.1 60.484 124 38 3 29 141 2 125 3.05e-41 136
Msa1426880 AT4G20380.5 60.484 124 38 3 29 141 2 125 3.05e-41 136
Msa1426880 AT4G20380.9 60.656 122 37 3 29 139 2 123 7.16e-41 134
Msa1426880 AT4G20380.8 50.667 150 37 3 29 141 2 151 9.68e-38 128
Msa1426880 AT4G20380.8 46.154 78 39 1 70 144 4 81 3.75e-15 69.7
Msa1426880 AT4G21610.1 55.294 85 35 1 67 148 57 141 2.31e-27 100
Msa1426880 AT4G21610.2 60.274 73 29 0 67 139 57 129 3.32e-26 97.1

Find 66 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAAATTCTTCTTCACTTC+TGG 0.143177 tig0026083:-9938 Msa1426880:five_prime_UTR
CCTTTGACTCTCACTTTATC+TGG 0.202596 tig0026083:-9862 Msa1426880:five_prime_UTR
AAAGGTCCAAGTACAGTAAA+AGG 0.221457 tig0026083:-7787 Msa1426880:three_prime_UTR
TTATTTCTTTCACATACTTT+TGG 0.252427 tig0026083:-7825 Msa1426880:three_prime_UTR
TTTGTTCTGTTTGTAGAATT+TGG 0.262955 tig0026083:-9696 Msa1426880:five_prime_UTR
TATTGAGTTATGTGTGATAA+AGG 0.287226 tig0026083:+9991 None:intergenic
GTACTTAAATATCAATCTTA+AGG 0.309191 tig0026083:-8114 Msa1426880:three_prime_UTR
AACGTTTACTCTCATAATAT+TGG 0.313642 tig0026083:-10251 None:intergenic
CAGAGTCAACTTGTGTGTTC+TGG 0.355331 tig0026083:-9024 Msa1426880:CDS
ATGCTACTTATGTATCAATA+TGG 0.369271 tig0026083:-8444 Msa1426880:CDS
TATATCAGTAAGATAACAAC+TGG 0.377081 tig0026083:-7745 None:intergenic
AAGTATGTGAAAGAAATAAA+TGG 0.382512 tig0026083:+7829 None:intergenic
TTTGTTGGAGGTGTTGTATA+TGG 0.389709 tig0026083:+9582 None:intergenic
GTGTATTGTGACAGCAAATC+AGG 0.393093 tig0026083:-8496 Msa1426880:intron
GAGAAAAGAAATGGTGGAAA+AGG 0.412620 tig0026083:+10117 None:intergenic
ATTGCAAACTGCACATTTCA+CGG 0.413666 tig0026083:+8413 None:intergenic
ATTGAGTTATGTGTGATAAA+GGG 0.422105 tig0026083:+9992 None:intergenic
GGATAAGGAGCAAGTGGAAC+TGG 0.439901 tig0026083:+9633 None:intergenic
AAGGAAACCTTTGAAGCAAA+AGG 0.443679 tig0026083:+9816 None:intergenic
CATTACAGACTCTACAACCT+TGG 0.445898 tig0026083:-8143 Msa1426880:three_prime_UTR
GCTGGAGGTGGAGTTGGATA+AGG 0.453949 tig0026083:+9618 None:intergenic
GCTGGAGCAGGAGCTGGAGG+TGG 0.460297 tig0026083:+9606 None:intergenic
CATACAGAAGTGGCTCCAAC+TGG 0.466065 tig0026083:+8979 None:intergenic
AAAGTGAAGATACCATTTGT+TGG 0.467296 tig0026083:+9567 None:intergenic
GGATGTACATGAGTAAAGTA+TGG 0.469461 tig0026083:+8721 None:intergenic
GCAGGAGCTGGAGGTGGAGT+TGG 0.472992 tig0026083:+9612 None:intergenic
GTCACAGCAGTGCCACCTCC+TGG 0.473850 tig0026083:-8937 Msa1426880:intron
GAAATGGCTCAGTTAGTTTG+TGG 0.475051 tig0026083:-8750 Msa1426880:CDS
AAAAGGGTAAAGCAGTCAAA+TGG 0.480658 tig0026083:-7770 Msa1426880:three_prime_UTR
TGTATTCACAGGCACAGAAA+TGG 0.480688 tig0026083:-8766 Msa1426880:intron
TATGGAGCTGGAGCAGGAGC+TGG 0.484907 tig0026083:+9600 None:intergenic
CCAGATAAAGTGAGAGTCAA+AGG 0.509284 tig0026083:+9862 None:intergenic
GAGAGAGAGAAAAGAAATGG+TGG 0.510108 tig0026083:+10111 None:intergenic
TATACAACACCTCCAACAAA+TGG 0.513032 tig0026083:-9579 Msa1426880:intron
GTTGTATATGGAGCTGGAGC+AGG 0.513741 tig0026083:+9594 None:intergenic
TCACACAGTCAATCTAGCTC+TGG 0.518089 tig0026083:-8667 Msa1426880:CDS
AACCTTCTTATGTATCCAGT+TGG 0.523909 tig0026083:-8994 Msa1426880:CDS
GGAGGTGTTGTATATGGAGC+TGG 0.527136 tig0026083:+9588 None:intergenic
AAGGTCCAAGTACAGTAAAA+GGG 0.533894 tig0026083:-7786 Msa1426880:three_prime_UTR
ATAATAGTATATGATTTATG+AGG 0.535470 tig0026083:+8174 None:intergenic
TCTTCCTCCAGCTTCATGCA+TGG 0.537787 tig0026083:-9911 Msa1426880:five_prime_UTR
AATACAATCACCGTCACGCA+AGG 0.559660 tig0026083:+8032 None:intergenic
TTTGCTAGAAAAGAAAATGA+AGG 0.559817 tig0026083:-10221 Msa1426880:five_prime_UTR
ATTTACCTTACCAAAAGATG+TGG 0.560547 tig0026083:+7927 None:intergenic
GTGAAGATACCATTTGTTGG+AGG 0.564232 tig0026083:+9570 None:intergenic
CTCCAACTGGATACATAAGA+AGG 0.572621 tig0026083:+8992 None:intergenic
AAACCTTTGAAGCAAAAGGT+TGG 0.575078 tig0026083:+9820 None:intergenic
TGAAAGAAATAAATGGTGCT+TGG 0.582348 tig0026083:+7836 None:intergenic
CTGCTCCGTCGTGCTTGCTG+AGG 0.583212 tig0026083:+8210 None:intergenic
GGAGTTGGATAAGGAGCAAG+TGG 0.592607 tig0026083:+9627 None:intergenic
TATTTCATCATACCAGGAGG+TGG 0.599736 tig0026083:+8925 None:intergenic
AACAGCACAGCATACAGAAG+TGG 0.604154 tig0026083:+8969 None:intergenic
GGAGCTGGAGCAGGAGCTGG+AGG 0.618511 tig0026083:+9603 None:intergenic
ATGGCTCAGTTAGTTTGTGG+AGG 0.620989 tig0026083:-8747 Msa1426880:CDS
ATACAATCACCGTCACGCAA+GGG 0.630625 tig0026083:+8033 None:intergenic
ACAGTCAATCTAGCTCTGGA+AGG 0.636792 tig0026083:-8663 Msa1426880:intron
ATGTCAACTGTGGTAACTGC+AGG 0.637282 tig0026083:-8467 Msa1426880:CDS
AAAATAACTCTATACATGTG+AGG 0.644150 tig0026083:+8057 None:intergenic
AATCATATACTATTATAGCA+AGG 0.645071 tig0026083:-8167 Msa1426880:three_prime_UTR
AAAACCATGCATGAAGCTGG+AGG 0.646121 tig0026083:+9907 None:intergenic
AACTATACTGACCCCAACTG+AGG 0.675495 tig0026083:+8383 None:intergenic
GCAGGCCTCAGCAAGCACGA+CGG 0.676096 tig0026083:-8215 Msa1426880:intron
ATTGAACACTCGTCGCTCCG+CGG 0.692743 tig0026083:+8700 None:intergenic
CAGGTAGCACATGTCAACTG+TGG 0.705529 tig0026083:-8477 Msa1426880:CDS
ACTTTACTCATGTACATCCG+CGG 0.709515 tig0026083:-8717 Msa1426880:CDS
ATGGTGGAAAAGGATATGAG+TGG 0.731997 tig0026083:+10127 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATACAAAATTTACTAAA+TGG - tig0026083:8645-8664 Msa1426880:intron 10.0%
!!! ATATAATTTTACTTGTACAA+TGG + tig0026083:7954-7973 None:intergenic 15.0%
!! ATAATAGTATATGATTTATG+AGG + tig0026083:9824-9843 None:intergenic 15.0%
!!! TCTTATTTCTTATCCATATT+TGG - tig0026083:8547-8566 Msa1426880:intron 20.0%
!!! ATGTCTAATTTTAGTATTGA+TGG - tig0026083:8593-8612 Msa1426880:intron 20.0%
!! ATTCTTAAAACTACAAAGTA+CGG + tig0026083:9474-9493 None:intergenic 20.0%
!! AATCATATACTATTATAGCA+AGG - tig0026083:9828-9847 Msa1426880:five_prime_UTR 20.0%
!! GTACTTAAATATCAATCTTA+AGG - tig0026083:9881-9900 Msa1426880:five_prime_UTR 20.0%
!! AAGTATGTGAAAGAAATAAA+TGG + tig0026083:10169-10188 None:intergenic 20.0%
!!! TTATTTCTTTCACATACTTT+TGG - tig0026083:10170-10189 Msa1426880:five_prime_UTR 20.0%
!!! TCATTTTCTTTTCTAGCAAA+TGG + tig0026083:7774-7793 None:intergenic 25.0%
! TTTGCTAGAAAAGAAAATGA+AGG - tig0026083:7774-7793 Msa1426880:three_prime_UTR 25.0%
!!! AGTTTGCTAGAATGAAAAAA+GGG + tig0026083:7911-7930 None:intergenic 25.0%
!!! TAGTTTGCTAGAATGAAAAA+AGG + tig0026083:7912-7931 None:intergenic 25.0%
! ATTGAGTTATGTGTGATAAA+GGG + tig0026083:8006-8025 None:intergenic 25.0%
! TATTGAGTTATGTGTGATAA+AGG + tig0026083:8007-8026 None:intergenic 25.0%
!!! ATGCATGGTTTTTTATTTCA+AGG - tig0026083:8099-8118 Msa1426880:three_prime_UTR 25.0%
!! AAAAAAGTGATTAACTTGGT+AGG + tig0026083:8210-8229 None:intergenic 25.0%
! GGAAAAAAAAGTGATTAACT+TGG + tig0026083:8214-8233 None:intergenic 25.0%
! AGTAAAAGATTCATTCAAGA+GGG + tig0026083:8235-8254 None:intergenic 25.0%
! TAGTAAAAGATTCATTCAAG+AGG + tig0026083:8236-8255 None:intergenic 25.0%
!! ACTATATTTCTTCATTTTCC+AGG - tig0026083:8252-8271 Msa1426880:intron 25.0%
! TTTGTTCTGTTTGTAGAATT+TGG - tig0026083:8299-8318 Msa1426880:intron 25.0%
!!! TTGATGCATGTTCTTTATTT+TGG - tig0026083:8478-8497 Msa1426880:CDS 25.0%
! ACAAAATTTACTAAATGGAG+AGG - tig0026083:8650-8669 Msa1426880:intron 25.0%
! TCCAATTTCTTATCAGATAA+AGG - tig0026083:8684-8703 Msa1426880:CDS 25.0%
! CCAATTTCTTATCAGATAAA+GGG - tig0026083:8685-8704 Msa1426880:CDS 25.0%
!! GCTTTTTGTTAAAATCACAT+AGG + tig0026083:8827-8846 None:intergenic 25.0%
!! AAAAATGTTGTTTGAATGCT+AGG - tig0026083:8944-8963 Msa1426880:CDS 25.0%
! GTTCAATTGACTAATAAATG+TGG + tig0026083:9182-9201 None:intergenic 25.0%
!! ATGCTACTTATGTATCAATA+TGG - tig0026083:9551-9570 Msa1426880:intron 25.0%
! TTCTCTTCAAAATAGAAAAG+CGG + tig0026083:9659-9678 None:intergenic 25.0%
! TATTTAAGTACCAAAAACCA+AGG + tig0026083:9872-9891 None:intergenic 25.0%
! AAAATAACTCTATACATGTG+AGG + tig0026083:9941-9960 None:intergenic 25.0%
!!! TTAAGCGTTTTTGTTTGAAT+TGG - tig0026083:9984-10003 Msa1426880:five_prime_UTR 25.0%
!!! TTCTACTTTTGTTCAATAAG+TGG - tig0026083:10097-10116 Msa1426880:five_prime_UTR 25.0%
GGATGTACACTAAAAAGAAA+TGG + tig0026083:7850-7869 None:intergenic 30.0%
CTTAAATTCTTCTTCACTTC+TGG - tig0026083:8057-8076 Msa1426880:three_prime_UTR 30.0%
!!! CATGGTTTTTTATTTCAAGG+AGG - tig0026083:8102-8121 Msa1426880:three_prime_UTR 30.0%
! ATTAACTTGGTAGGTTGAAA+AGG + tig0026083:8201-8220 None:intergenic 30.0%
! TTTTCCAGGAGTTGAAAAAA+TGG - tig0026083:8266-8285 Msa1426880:intron 30.0%
TTTCCAGGAGTTGAAAAAAT+GGG - tig0026083:8267-8286 Msa1426880:intron 30.0%
AAAGTGAAGATACCATTTGT+TGG + tig0026083:8431-8450 None:intergenic 30.0%
ATAAAGAACATGCATCAATG+AGG + tig0026083:8476-8495 None:intergenic 30.0%
TACTTTATGCTGATGAATTG+TGG - tig0026083:8510-8529 Msa1426880:intron 30.0%
TCTTATCCATATTTGGAAGA+AGG - tig0026083:8554-8573 Msa1426880:intron 30.0%
TTTAGTCCTTCTTCCAAATA+TGG + tig0026083:8563-8582 None:intergenic 30.0%
CCCTTTATCTGATAAGAAAT+TGG + tig0026083:8688-8707 None:intergenic 30.0%
TCTAAACATGCACTAAAGAT+AGG + tig0026083:8773-8792 None:intergenic 30.0%
CCATACCATAAAACATTAAG+TGG + tig0026083:8881-8900 None:intergenic 30.0%
! CCACTTAATGTTTTATGGTA+TGG - tig0026083:8878-8897 Msa1426880:intron 30.0%
! TGTTTTATGGTATGGAAATG+TGG - tig0026083:8886-8905 Msa1426880:intron 30.0%
GAAGAATATTTCATCATACC+AGG + tig0026083:9079-9098 None:intergenic 30.0%
AGAGACCTAATAACTGATAA+GGG + tig0026083:9102-9121 None:intergenic 30.0%
TAGAGACCTAATAACTGATA+AGG + tig0026083:9103-9122 None:intergenic 30.0%
ATATCAGAAACTGAAGATTC+AGG + tig0026083:9156-9175 None:intergenic 30.0%
!! ATAAGCATTGATGTATTCAC+AGG - tig0026083:9218-9237 Msa1426880:intron 30.0%
TCAAAATAGAAAAGCGGAAA+AGG + tig0026083:9653-9672 None:intergenic 30.0%
!!! AAACTATGTCTTGTTTTGCA+AGG + tig0026083:9703-9722 None:intergenic 30.0%
! TATGCAAAAACCACATCTTT+TGG - tig0026083:10058-10077 Msa1426880:five_prime_UTR 30.0%
! AAAAACCACATCTTTTGGTA+AGG - tig0026083:10063-10082 Msa1426880:five_prime_UTR 30.0%
ATTTACCTTACCAAAAGATG+TGG + tig0026083:10071-10090 None:intergenic 30.0%
TGAAAGAAATAAATGGTGCT+TGG + tig0026083:10162-10181 None:intergenic 30.0%
! GAGAAAAGAAATGGTGGAAA+AGG + tig0026083:7881-7900 None:intergenic 35.0%
TAAAAAACCATGCATGAAGC+TGG + tig0026083:8094-8113 None:intergenic 35.0%
!! AAACCTTTGAAGCAAAAGGT+TGG + tig0026083:8178-8197 None:intergenic 35.0%
!! AAGGAAACCTTTGAAGCAAA+AGG + tig0026083:8182-8201 None:intergenic 35.0%
!! TTTGTTGGAGGTGTTGTATA+TGG + tig0026083:8416-8435 None:intergenic 35.0%
TATACAACACCTCCAACAAA+TGG - tig0026083:8416-8435 Msa1426880:CDS 35.0%
TTATGCTGATGAATTGTGGT+TGG - tig0026083:8514-8533 Msa1426880:intron 35.0%
TCAGATAAAGGGAGATATGT+TGG - tig0026083:8696-8715 Msa1426880:CDS 35.0%
!!! CAGTGCCACTTAATGTTTTA+TGG - tig0026083:8873-8892 Msa1426880:intron 35.0%
AACCTTCTTATGTATCCAGT+TGG - tig0026083:9001-9020 Msa1426880:CDS 35.0%
GAATATTTCATCATACCAGG+AGG + tig0026083:9076-9095 None:intergenic 35.0%
TCTTCCCCTTATCAGTTATT+AGG - tig0026083:9094-9113 Msa1426880:intron 35.0%
GAGACCTAATAACTGATAAG+GGG + tig0026083:9101-9120 None:intergenic 35.0%
GGATGTACATGAGTAAAGTA+TGG + tig0026083:9277-9296 None:intergenic 35.0%
CGAGTTAAATTGCTGTGATT+CGG - tig0026083:9445-9464 Msa1426880:intron 35.0%
ATTGCAAACTGCACATTTCA+CGG + tig0026083:9585-9604 None:intergenic 35.0%
! TGCAATTTTGTTACCTCAGT+TGG - tig0026083:9599-9618 Msa1426880:CDS 35.0%
! GCAATTTTGTTACCTCAGTT+GGG - tig0026083:9600-9619 Msa1426880:CDS 35.0%
! CAATTTTGTTACCTCAGTTG+GGG - tig0026083:9601-9620 Msa1426880:CDS 35.0%
! ATGTTACTGAATGATGATGC+AGG - tig0026083:9762-9781 Msa1426880:intron 35.0%
!! CTGCTATATTTTTGTGTGTG+TGG - tig0026083:10132-10151 Msa1426880:five_prime_UTR 35.0%
!! TTCACATACTTTTGGCCTTT+TGG - tig0026083:10178-10197 Msa1426880:five_prime_UTR 35.0%
!! TGGCCTTTTGGAAATAGAAA+AGG - tig0026083:10190-10209 Msa1426880:five_prime_UTR 35.0%
! GGACCTTTTCTATTTCCAAA+AGG + tig0026083:10196-10215 None:intergenic 35.0%
AAAGGTCCAAGTACAGTAAA+AGG - tig0026083:10208-10227 Msa1426880:five_prime_UTR 35.0%
AAGGTCCAAGTACAGTAAAA+GGG - tig0026083:10209-10228 Msa1426880:five_prime_UTR 35.0%
! CTTTACCCTTTTACTGTACT+TGG + tig0026083:10217-10236 None:intergenic 35.0%
AAAAGGGTAAAGCAGTCAAA+TGG - tig0026083:10225-10244 Msa1426880:five_prime_UTR 35.0%
! ATGGTGGAAAAGGATATGAG+TGG + tig0026083:7871-7890 None:intergenic 40.0%
GAGAGAGAGAAAAGAAATGG+TGG + tig0026083:7887-7906 None:intergenic 40.0%
GGAGAGAGAGAGAAAAGAAA+TGG + tig0026083:7890-7909 None:intergenic 40.0%
CCAGATAAAGTGAGAGTCAA+AGG + tig0026083:8136-8155 None:intergenic 40.0%
CCTTTGACTCTCACTTTATC+TGG - tig0026083:8133-8152 Msa1426880:three_prime_UTR 40.0%
! CTACCAACCTTTTGCTTCAA+AGG - tig0026083:8172-8191 Msa1426880:exon 40.0%
! GTGAAGATACCATTTGTTGG+AGG + tig0026083:8428-8447 None:intergenic 40.0%
GGTTCAAATCTGAGTCTTAG+AGG + tig0026083:8752-8771 None:intergenic 40.0%
! ACAGTGAGTTTTGCGAAATC+AGG - tig0026083:8796-8815 Msa1426880:intron 40.0%
! CAGTGAGTTTTGCGAAATCA+GGG - tig0026083:8797-8816 Msa1426880:intron 40.0%
CTCCAACTGGATACATAAGA+AGG + tig0026083:9006-9025 None:intergenic 40.0%
TATTTCATCATACCAGGAGG+TGG + tig0026083:9073-9092 None:intergenic 40.0%
TGTATTCACAGGCACAGAAA+TGG - tig0026083:9229-9248 Msa1426880:intron 40.0%
! GAAATGGCTCAGTTAGTTTG+TGG - tig0026083:9245-9264 Msa1426880:intron 40.0%
ACTTTACTCATGTACATCCG+CGG - tig0026083:9278-9297 Msa1426880:intron 40.0%
GTGTATTGTGACAGCAAATC+AGG - tig0026083:9499-9518 Msa1426880:intron 40.0%
GAAAAGCGGAAAAGGTAGTA+TGG + tig0026083:9645-9664 None:intergenic 40.0%
CATTACAGACTCTACAACCT+TGG - tig0026083:9852-9871 Msa1426880:five_prime_UTR 40.0%
!! GACTCTACAACCTTGGTTTT+TGG - tig0026083:9859-9878 Msa1426880:five_prime_UTR 40.0%
!!! GTTATTTTTCCCTTGCGTGA+CGG - tig0026083:9953-9972 Msa1426880:five_prime_UTR 40.0%
AAAACCATGCATGAAGCTGG+AGG + tig0026083:8091-8110 None:intergenic 45.0%
!!! CCACCCATTTTTTCAACTCC+TGG + tig0026083:8273-8292 None:intergenic 45.0%
CCAGGAGTTGAAAAAATGGG+TGG - tig0026083:8270-8289 Msa1426880:intron 45.0%
CAGAGTCAACTTGTGTGTTC+TGG - tig0026083:8971-8990 Msa1426880:CDS 45.0%
AACAGCACAGCATACAGAAG+TGG + tig0026083:9029-9048 None:intergenic 45.0%
!! ATGGCTCAGTTAGTTTGTGG+AGG - tig0026083:9248-9267 Msa1426880:intron 45.0%
! TCACACAGTCAATCTAGCTC+TGG - tig0026083:9328-9347 Msa1426880:intron 45.0%
!! ACAGTCAATCTAGCTCTGGA+AGG - tig0026083:9332-9351 Msa1426880:intron 45.0%
ATGTCAACTGTGGTAACTGC+AGG - tig0026083:9528-9547 Msa1426880:intron 45.0%
AACTATACTGACCCCAACTG+AGG + tig0026083:9615-9634 None:intergenic 45.0%
ATACAATCACCGTCACGCAA+GGG + tig0026083:9965-9984 None:intergenic 45.0%
AATACAATCACCGTCACGCA+AGG + tig0026083:9966-9985 None:intergenic 45.0%
TCTTCCTCCAGCTTCATGCA+TGG - tig0026083:8084-8103 Msa1426880:three_prime_UTR 50.0%
GGATAAGGAGCAAGTGGAAC+TGG + tig0026083:8365-8384 None:intergenic 50.0%
GGAGTTGGATAAGGAGCAAG+TGG + tig0026083:8371-8390 None:intergenic 50.0%
GTTGTATATGGAGCTGGAGC+AGG + tig0026083:8404-8423 None:intergenic 50.0%
!! GGAGGTGTTGTATATGGAGC+TGG + tig0026083:8410-8429 None:intergenic 50.0%
CATACAGAAGTGGCTCCAAC+TGG + tig0026083:9019-9038 None:intergenic 50.0%
CAGGTAGCACATGTCAACTG+TGG - tig0026083:9518-9537 Msa1426880:intron 50.0%
GCTGGAGGTGGAGTTGGATA+AGG + tig0026083:8380-8399 None:intergenic 55.0%
ATTGAACACTCGTCGCTCCG+CGG + tig0026083:9298-9317 None:intergenic 55.0%
TATGGAGCTGGAGCAGGAGC+TGG + tig0026083:8398-8417 None:intergenic 60.0%
GCAGGAGCTGGAGGTGGAGT+TGG + tig0026083:8386-8405 None:intergenic 65.0%
GTCACAGCAGTGCCACCTCC+TGG - tig0026083:9058-9077 Msa1426880:intron 65.0%
GCAGGCCTCAGCAAGCACGA+CGG - tig0026083:9780-9799 Msa1426880:intron 65.0%
! CTGCTCCGTCGTGCTTGCTG+AGG + tig0026083:9788-9807 None:intergenic 65.0%
GCTGGAGCAGGAGCTGGAGG+TGG + tig0026083:8392-8411 None:intergenic 70.0%
GGAGCTGGAGCAGGAGCTGG+AGG + tig0026083:8395-8414 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0026083 gene 7748 10269 7748 ID=Msa1426880;Name=Msa1426880
tig0026083 mRNA 7748 10269 7748 ID=Msa1426880-mRNA-1;Parent=Msa1426880;Name=Msa1426880-mRNA-1;_AED=0.08;_eAED=0.08;_QI=531|1|1|1|0.8|0.66|6|441|153
tig0026083 exon 7748 8233 7748 ID=Msa1426880-mRNA-1:exon:5179;Parent=Msa1426880-mRNA-1
tig0026083 exon 8395 8504 8395 ID=Msa1426880-mRNA-1:exon:5178;Parent=Msa1426880-mRNA-1
tig0026083 exon 8664 8777 8664 ID=Msa1426880-mRNA-1:exon:5177;Parent=Msa1426880-mRNA-1
tig0026083 exon 8938 9051 8938 ID=Msa1426880-mRNA-1:exon:5176;Parent=Msa1426880-mRNA-1
tig0026083 exon 9580 9743 9580 ID=Msa1426880-mRNA-1:exon:5175;Parent=Msa1426880-mRNA-1
tig0026083 exon 9824 10269 9824 ID=Msa1426880-mRNA-1:exon:5174;Parent=Msa1426880-mRNA-1
tig0026083 five_prime_UTR 9824 10269 9824 ID=Msa1426880-mRNA-1:five_prime_utr;Parent=Msa1426880-mRNA-1
tig0026083 five_prime_UTR 9659 9743 9659 ID=Msa1426880-mRNA-1:five_prime_utr;Parent=Msa1426880-mRNA-1
tig0026083 CDS 9580 9658 9580 ID=Msa1426880-mRNA-1:cds;Parent=Msa1426880-mRNA-1
tig0026083 CDS 8938 9051 8938 ID=Msa1426880-mRNA-1:cds;Parent=Msa1426880-mRNA-1
tig0026083 CDS 8664 8777 8664 ID=Msa1426880-mRNA-1:cds;Parent=Msa1426880-mRNA-1
tig0026083 CDS 8395 8504 8395 ID=Msa1426880-mRNA-1:cds;Parent=Msa1426880-mRNA-1
tig0026083 CDS 8189 8233 8189 ID=Msa1426880-mRNA-1:cds;Parent=Msa1426880-mRNA-1
tig0026083 three_prime_UTR 7748 8188 7748 ID=Msa1426880-mRNA-1:three_prime_utr;Parent=Msa1426880-mRNA-1
Gene Sequence

>Msa1426880

ATGCCAGTTCCACTTGCTCCTTATCCAACTCCACCTCCAGCTCCTGCTCCAGCTCCATATACAACACCTCCAACAAATGGTGCACAGAGTCAACTTGTGTGTTCTGGTTGTAGAAACCTTCTTATGTATCCAGTTGGAGCCACTTCTGTATGCTGTGCTGTTTGCAATGCTGTCACAGCAGTGCCACCTCCTGGCACAGAAATGGCTCAGTTAGTTTGTGGAGGATGCCATACTTTACTCATGTACATCCGCGGAGCGACGAGTGTTCAATGCTCTTGTTGTCACACAGTCAATCTAGCTCTGGAAGCAAATCAGGTAGCACATGTCAACTGTGGTAACTGCAGGATGCTACTTATGTATCAATATGGAGCAAGATCCGTGAAATGTGCAGTTTGCAATTTTGTTACCTCAGTTGGGGCCTCAGCAAGCACGACGGAGCAGCAGAAGTTCAGCACCTCATAA

Protein sequence

>Msa1426880

MPVPLAPYPTPPPAPAPAPYTTPPTNGAQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASASTTEQQKFSTS*