AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1314020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1314020 MtrunA17_Chr8g0342951 96.313 868 32 0 1 868 1 868 0.0 1713
Msa1314020 MtrunA17_Chr8g0342971 86.782 870 113 2 1 868 1 870 0.0 1586
Msa1314020 MtrunA17_Chr8g0344211 84.793 868 132 0 1 868 1 868 0.0 1533
Msa1314020 MtrunA17_Chr8g0343011 82.529 870 145 2 1 868 1 865 0.0 1498
Msa1314020 MtrunA17_Chr8g0342891 80.233 860 166 1 9 868 6 861 0.0 1467
Msa1314020 MtrunA17_Chr8g0342921 77.931 870 189 3 1 868 1 869 0.0 1428
Msa1314020 MtrunA17_Chr8g0342931 83.333 750 125 0 119 868 1 750 0.0 1326
Msa1314020 MtrunA17_Chr8g0342901 73.812 863 183 7 9 868 6 828 0.0 1309
Msa1314020 MtrunA17_Chr2g0329911 71.001 869 243 3 1 868 1 861 0.0 1290
Msa1314020 MtrunA17_Chr8g0342881 71.062 857 241 2 12 868 7 856 0.0 1275
Msa1314020 MtrunA17_Chr2g0329901 66.667 864 283 3 5 868 5 863 0.0 1203
Msa1314020 MtrunA17_Chr5g0406871 65.323 868 292 7 7 868 3 867 0.0 1190
Msa1314020 MtrunA17_Chr8g0343021 65.323 868 289 7 7 868 3 864 0.0 1187
Msa1314020 MtrunA17_Chr8g0343031 64.327 869 294 6 8 868 5 865 0.0 1167
Msa1314020 MtrunA17_Chr3g0120071 64.079 863 300 5 8 868 4 858 0.0 1159
Msa1314020 MtrunA17_Chr8g0343001 64.685 858 241 8 14 868 9 807 0.0 1124
Msa1314020 MtrunA17_Chr8g0342991 64.959 859 237 10 14 868 9 807 0.0 1117
Msa1314020 MtrunA17_Chr8g0342981 64.477 822 247 10 62 868 32 823 0.0 1060
Msa1314020 MtrunA17_Chr1g0191921 57.688 865 332 7 14 868 18 858 0.0 1008
Msa1314020 MtrunA17_Chr7g0272791 56.401 867 342 9 15 868 24 867 0.0 1000
Msa1314020 MtrunA17_Chr1g0205611 55.798 871 345 9 15 868 9 856 0.0 999
Msa1314020 MtrunA17_Chr8g0344241 87.089 395 51 0 474 868 67 461 0.0 731
Msa1314020 MtrunA17_Chr8g0344241 81.667 60 11 0 294 353 9 68 2.02e-23 104
Msa1314020 MtrunA17_Chr8g0344201 46.041 821 426 11 57 867 113 926 0.0 723
Msa1314020 MtrunA17_Chr3g0118651 43.130 837 433 15 53 868 89 903 0.0 657
Msa1314020 MtrunA17_Chr8g0338451 42.770 823 426 12 56 851 46 850 0.0 652
Msa1314020 MtrunA17_Chr8g0377101 42.399 842 445 17 50 868 92 916 0.0 640
Msa1314020 MtrunA17_Chr3g0118641 42.410 830 449 16 53 868 88 902 0.0 637
Msa1314020 MtrunA17_Chr4g0033171 46.121 709 368 10 168 868 23 725 0.0 618
Msa1314020 MtrunA17_Chr4g0047281 40.667 809 440 11 67 865 114 892 0.0 600
Msa1314020 MtrunA17_Chr3g0118621 44.198 767 410 12 113 868 106 865 0.0 595
Msa1314020 MtrunA17_Chr6g0471951 41.061 509 254 6 322 826 11 477 3.87e-130 399
Msa1314020 MtrunA17_Chr7g0218231 61.538 117 44 1 522 637 16 132 5.07e-43 152
Msa1314020 MtrunA17_Chr6g0468081 56.180 89 38 1 550 637 1 89 1.09e-26 104
Msa1314020 MtrunA17_Chr4g0047271 39.560 91 55 0 777 867 1 91 2.15e-16 75.1
Msa1314020 MtrunA17_Chr3g0137991 35.200 125 65 3 744 868 1 109 8.28e-15 71.2
Msa1314020 MtrunA17_Chr7g0272781 42.857 63 35 1 760 822 8 69 8.31e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1314020 AT1G55020.1 55.811 869 343 10 13 868 19 859 0.0 993
Msa1314020 AT3G22400.1 54.566 876 354 10 14 868 34 886 0.0 987
Msa1314020 AT1G72520.1 44.336 821 440 10 57 868 114 926 0.0 706
Msa1314020 AT1G17420.1 44.458 821 438 11 57 868 108 919 0.0 694
Msa1314020 AT3G45140.1 42.771 830 429 19 57 868 95 896 0.0 636
Msa1314020 AT3G45140.2 44.473 769 391 17 118 868 4 754 0.0 624
Msa1314020 AT1G67560.1 41.312 823 449 15 64 868 111 917 0.0 605

Find 237 sgRNAs with CRISPR-Local

Find 387 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTATCAAATGCAGCCTTAA+TGG 0.190018 8_4:-12387221 Msa1314020:three_prime_UTR
CTTCTGATGGACTAGAAATA+TGG 0.237016 8_4:-12388089 Msa1314020:CDS
TTCACCAACCCATGACTTAA+TGG 0.254314 8_4:+12388062 None:intergenic
AACCTCTTGAAGGCTTCTTT+TGG 0.268560 8_4:+12387586 None:intergenic
AAGCTTCCACCATCCTTATA+TGG 0.290240 8_4:-12387891 Msa1314020:CDS
CAATTGGCTCGTCAAATTCT+TGG 0.291064 8_4:-12390205 Msa1314020:CDS
GTATGTACAATCTATTGTTT+TGG 0.298876 8_4:+12389103 None:intergenic
ATTCTGAACTCCAAGCATTC+TGG 0.306722 8_4:-12387996 Msa1314020:CDS
TTCCTGAAATAAAACCATTA+AGG 0.307697 8_4:+12387207 None:intergenic
TATATACCTTGAATCACTTT+TGG 0.314352 8_4:+12389678 None:intergenic
TGGCTATCTAGCTTGCTCTT+TGG 0.332936 8_4:+12389346 None:intergenic
AATTGGCTCGTCAAATTCTT+GGG 0.333617 8_4:-12390204 Msa1314020:CDS
GTCAATCCTTCCTCGCTAGA+AGG 0.335173 8_4:+12387457 None:intergenic
AACAGTATCTCCATCTAAAA+TGG 0.337794 8_4:-12387418 Msa1314020:exon
CTTCCAAGAGATGAATCATT+TGG 0.339142 8_4:-12389948 Msa1314020:CDS
TCAGTAAGAGTATCATTCTT+TGG 0.350791 8_4:+12387703 None:intergenic
GCTTAAATGTATAATATCTT+AGG 0.354698 8_4:+12392316 None:intergenic
TATCTCATATGGTTCAAATA+TGG 0.357066 8_4:-12387179 Msa1314020:intron
GCTTCAACACCTTCACTTGC+GGG 0.358408 8_4:+12388898 None:intergenic
CTTCTTTCCAAACCTCTTGA+AGG 0.358888 8_4:+12387576 None:intergenic
GAAGAGTTGAAGACTTTAAG+AGG 0.362440 8_4:-12390313 Msa1314020:CDS
GACAGTGACATGGGAATTCC+TGG 0.363962 8_4:-12390763 Msa1314020:CDS
AAAGAAGCCTTCAAGAGGTT+TGG 0.368065 8_4:-12387583 Msa1314020:CDS
CACCCTCAAGGTGATAGTTT+TGG 0.371667 8_4:-12388943 Msa1314020:CDS
GCCAATTGAGGTTTCGAGTC+AGG 0.371804 8_4:+12390220 None:intergenic
TTGTCCTCAAATAGGTCTTC+TGG 0.375950 8_4:+12387731 None:intergenic
ACCCGCTCTTTCCATATTTG+AGG 0.383986 8_4:-12389068 Msa1314020:CDS
ACAGTGACCCCACCCATGTT+TGG 0.384996 8_4:+12389277 None:intergenic
CTATCTAGCTTGCTCTTTGG+TGG 0.385775 8_4:+12389349 None:intergenic
TTATGATGTCTACAATGATT+TGG 0.388585 8_4:-12390248 Msa1314020:CDS
GTTCTTCCCCTTCGAGGGTA+AGG 0.388654 8_4:+12390166 None:intergenic
TCCACTTTGTTTGCAACTCA+TGG 0.389443 8_4:-12390657 Msa1314020:CDS
TGGTGTGATTGTCCTCAAAT+AGG 0.391613 8_4:+12387723 None:intergenic
GTGCTGAAGCAATCCATATA+AGG 0.392721 8_4:+12387878 None:intergenic
CATTCGTCATAGCAACAAAT+AGG 0.394550 8_4:-12388692 Msa1314020:CDS
GACACTGCCACTTCCTTCTT+AGG 0.397476 8_4:-12392115 Msa1314020:CDS
CAAGTTCTTTCCAGAATGCT+TGG 0.398414 8_4:+12387986 None:intergenic
CTGCTGTTGTTTACAAGGAT+TGG 0.398565 8_4:-12388518 Msa1314020:CDS
AGTTCCTTGAACAATGGTAT+TGG 0.400202 8_4:+12389741 None:intergenic
CACCATAACTAAAGAAAACT+TGG 0.414273 8_4:-12389302 Msa1314020:CDS
TATGATGTCTACAATGATTT+GGG 0.419822 8_4:-12390247 Msa1314020:CDS
CTTCATGCAGCTGTTAACTT+TGG 0.424839 8_4:-12387856 Msa1314020:CDS
CTTGTGGGGAAATTATGCTT+TGG 0.426043 8_4:-12388547 Msa1314020:CDS
TTATAGTAGTTGATGAGATT+AGG 0.428042 8_4:+12392388 None:intergenic
CTGCCGGTTCTTCCCCTTCG+AGG 0.429096 8_4:+12390160 None:intergenic
CAAGAGGTTTGGAAAGAAGT+TGG 0.434558 8_4:-12387572 Msa1314020:CDS
TATTGAATCAACTTTCTTGT+GGG 0.435079 8_4:-12388562 Msa1314020:CDS
TTTGCAAGGGAGATGATTGC+TGG 0.437702 8_4:-12389528 Msa1314020:CDS
TCTTGTCTATAGTACACTAA+TGG 0.438231 8_4:+12390334 None:intergenic
GGAAGCAAGAGTTTATGAAT+AGG 0.438914 8_4:+12388651 None:intergenic
CCTTGACAAGACCTCTATAA+TGG 0.440236 8_4:+12387675 None:intergenic
AGCACTAAAGATGACTTCAT+TGG 0.444412 8_4:-12392296 Msa1314020:exon
ATAGAATTGAAGGTGACAAT+TGG 0.444518 8_4:-12387624 Msa1314020:CDS
GGTGCTATTGGTGATGTTGC+TGG 0.444661 8_4:-12392148 Msa1314020:CDS
TACCCTCGAAGGGGAAGAAC+CGG 0.444987 8_4:-12390163 Msa1314020:CDS
GGCAAGTAAACATTGCTAAC+AGG 0.445982 8_4:+12388919 None:intergenic
AAGGCTGCATTTGATACAAC+AGG 0.447930 8_4:+12387226 None:intergenic
TGTCCAAATGATTCATCTCT+TGG 0.449045 8_4:+12389945 None:intergenic
CCACCACCAAAAGTGATTCA+AGG 0.452144 8_4:-12389684 Msa1314020:intron
ACAATGGTATTGGACTAATC+TGG 0.453552 8_4:+12389751 None:intergenic
CGGAGACCAGTAGGAGAGGC+TGG 0.454121 8_4:+12388138 None:intergenic
ATTATCTTGCAAGAAAAGAA+TGG 0.455567 8_4:+12389005 None:intergenic
GGACTTCGAGTCTCACTGTT+AGG 0.459026 8_4:+12389981 None:intergenic
GAGGATCCAGCCTCTCCTAC+TGG 0.459624 8_4:-12388144 Msa1314020:CDS
GAAGCAAGAGTTTATGAATA+GGG 0.463724 8_4:+12388652 None:intergenic
GCCTGACTCGAAACCTCAAT+TGG 0.465501 8_4:-12390221 Msa1314020:CDS
TAGTCCAATACCATTGTTCA+AGG 0.470489 8_4:-12389745 Msa1314020:CDS
GGAACTGGAAAAGGAAAAGT+TGG 0.470758 8_4:-12390871 Msa1314020:CDS
GGGTGGGGTCACTGTAGAAC+AGG 0.470802 8_4:-12389269 Msa1314020:intron
CAAAGCCCTACTGGTATCAT+TGG 0.470844 8_4:-12392181 Msa1314020:CDS
GAAGGGTAAAGCAGAGTGTA+TGG 0.472663 8_4:+12387475 None:intergenic
AAGTGGATGGATCCATGGTT+TGG 0.473548 8_4:+12390673 None:intergenic
ACTTTAAGAGGGGATGGAAC+AGG 0.476377 8_4:-12390301 Msa1314020:CDS
GGTGGTGCCATAGGTGCTAT+TGG 0.479135 8_4:-12392160 Msa1314020:CDS
TTTGTCTCCCAATGTTGGTA+TGG 0.481893 8_4:+12390816 None:intergenic
TACTCAGGTGATCCTTTCTC+AGG 0.482761 8_4:+12387775 None:intergenic
AACAGGAGAGCGCAAGGAAT+GGG 0.484527 8_4:-12390284 Msa1314020:CDS
ATGATGAGACATTGAGGAAT+CGG 0.490739 8_4:-12387516 Msa1314020:CDS
TGCTTCAACACCTTCACTTG+CGG 0.491444 8_4:+12388897 None:intergenic
CTTTACCCTTCTAGCGAGGA+AGG 0.492306 8_4:-12387463 Msa1314020:CDS
TACCTTGGAGATAGAATTGA+AGG 0.492386 8_4:-12387634 Msa1314020:CDS
CATACCAATGGCTGACAAGT+TGG 0.492461 8_4:+12388821 None:intergenic
TGCCTAATGATCTAATCAAA+AGG 0.492577 8_4:-12388476 Msa1314020:intron
GTGTGGCCTGCTTAGTTCAA+TGG 0.497006 8_4:+12388963 None:intergenic
AATGGAGCCGGTGTTTCACT+TGG 0.497543 8_4:+12390352 None:intergenic
ATCAGTTTGGCTCCTTGCCA+AGG 0.497881 8_4:-12388875 Msa1314020:CDS
CTTACCTCCATACCAACATT+GGG 0.499072 8_4:-12390823 Msa1314020:CDS
AAGAGTTGAAGACTTTAAGA+GGG 0.499352 8_4:-12390312 Msa1314020:CDS
GCTGACAAGTTGGTGATAGC+AGG 0.499609 8_4:+12388831 None:intergenic
ACTGCAGCTCAAAGCCCTAC+TGG 0.500476 8_4:-12392190 Msa1314020:CDS
GATTATCCTTATGCTTCTGA+TGG 0.500902 8_4:-12388102 Msa1314020:CDS
AACATCACCAATAGCACCTA+TGG 0.501370 8_4:+12392153 None:intergenic
AGCTATAGAACGGCCTAAGA+AGG 0.502528 8_4:+12392102 None:intergenic
TGGTCTCCGCCTTCTGATAG+AGG 0.502669 8_4:-12388124 Msa1314020:CDS
TGCCGGTTCTTCCCCTTCGA+GGG 0.503677 8_4:+12390161 None:intergenic
AATGTCTGCTGTTGTTTACA+AGG 0.504818 8_4:-12388523 Msa1314020:CDS
TTCTGATGGACTAGAAATAT+GGG 0.506179 8_4:-12388088 Msa1314020:CDS
AAGGTGTTGAAGCATCAGTT+TGG 0.507198 8_4:-12388888 Msa1314020:CDS
AGAATTTGACGAGCCAATTG+AGG 0.508375 8_4:+12390208 None:intergenic
TTATTGAATCAACTTTCTTG+TGG 0.508477 8_4:-12388563 Msa1314020:CDS
TCTTGAAAGGTGTTAAACTC+GGG 0.511572 8_4:+12389825 None:intergenic
TGGAAAGAACTTGTAGAGGT+TGG 0.513323 8_4:-12387976 Msa1314020:CDS
TTGAAGACTTTAAGAGGGGA+TGG 0.514199 8_4:-12390307 Msa1314020:CDS
TCTTACCTCCATACCAACAT+TGG 0.515526 8_4:-12390824 Msa1314020:CDS
GGTATCATTGGTGGTGCCAT+AGG 0.517163 8_4:-12392169 Msa1314020:CDS
TACTGACTTGACCATTATAG+AGG 0.518055 8_4:-12387686 Msa1314020:CDS
CACTGGCCATTGAACTAAGC+AGG 0.519121 8_4:-12388969 Msa1314020:CDS
GACCAAAACTATCACCTTGA+GGG 0.520938 8_4:+12388941 None:intergenic
TGGAAAAGGAAAAGTTGGAC+AGG 0.521456 8_4:-12390866 Msa1314020:CDS
GAACAGGAGAGCGCAAGGAA+TGG 0.522042 8_4:-12390285 Msa1314020:CDS
TCTAGTCCATCAGAAGCATA+AGG 0.525524 8_4:+12388096 None:intergenic
AGAAGATTCATGCCTGAGAA+AGG 0.525970 8_4:-12387787 Msa1314020:CDS
TTCTTCCCCTTCGAGGGTAA+GGG 0.526455 8_4:+12390167 None:intergenic
AGAAAACTTGGAGCCAAACA+TGG 0.527594 8_4:-12389290 Msa1314020:CDS
ATCACCAACTTGTCAGCCAT+TGG 0.528699 8_4:-12388825 Msa1314020:intron
TGCACTTGCACGAAATGTCT+TGG 0.528941 8_4:-12388601 Msa1314020:CDS
AGAGTGTATGGCATCTTCAC+AGG 0.532936 8_4:+12387487 None:intergenic
CACCTTCAATTCTATCTCCA+AGG 0.533418 8_4:+12387632 None:intergenic
GATTGGAATTTCATTGAGCA+AGG 0.534618 8_4:-12388501 Msa1314020:CDS
AGCCCTACTGGTATCATTGG+TGG 0.535542 8_4:-12392178 Msa1314020:CDS
ATCTTGAAAGGTGTTAAACT+CGG 0.539742 8_4:+12389824 None:intergenic
GCTTGTGTCTTGTAACCATA+GGG 0.540521 8_4:+12392353 None:intergenic
TCCTCAAATATGGAAAGAGC+GGG 0.540806 8_4:+12389067 None:intergenic
CGATTTCCCTTACCCTCGAA+GGG 0.541927 8_4:-12390173 Msa1314020:CDS
CGGAAAAGTTCCTTGAACAA+TGG 0.542049 8_4:+12389735 None:intergenic
CTATTTGTTGCTATGACGAA+TGG 0.543162 8_4:+12388693 None:intergenic
AAACTATCACCTTGAGGGTG+TGG 0.543185 8_4:+12388946 None:intergenic
TAATGGAACTTTGAAGCCAC+TGG 0.543868 8_4:-12388986 Msa1314020:CDS
ATTTACAACAACAAAAGCCT+TGG 0.548619 8_4:+12388858 None:intergenic
AAGAATGGTTCTAGTAGCAT+AGG 0.548654 8_4:+12389020 None:intergenic
CCGCATCTTCTTTGCCAACA+AGG 0.548836 8_4:-12390605 Msa1314020:intron
TAAATACGAACCATTCCCTA+TGG 0.550679 8_4:-12392368 Msa1314020:five_prime_UTR
TGTCTTGTAACCATAGGGAA+TGG 0.551576 8_4:+12392358 None:intergenic
TCTCTTTGATAAGCACGAAA+AGG 0.553585 8_4:-12392266 Msa1314020:CDS
AAACAAAGTGGATGGATCCA+TGG 0.554216 8_4:+12390668 None:intergenic
ATTGGCTCGTCAAATTCTTG+GGG 0.554768 8_4:-12390203 Msa1314020:CDS
GCTTCTGATGAGCAATACCT+TGG 0.555714 8_4:-12387649 Msa1314020:CDS
ATCAGAAGGCGGAGACCAGT+AGG 0.558642 8_4:+12388129 None:intergenic
AACTTTGGACAATATCCGTA+TGG 0.559068 8_4:-12387841 Msa1314020:CDS
GGATGGAACAGGAGAGCGCA+AGG 0.559613 8_4:-12390290 Msa1314020:CDS
TACATCAAGAATTATATGCA+AGG 0.560399 8_4:-12390733 Msa1314020:CDS
ATTGAATCAACTTTCTTGTG+GGG 0.560869 8_4:-12388561 Msa1314020:CDS
TATGGGCTGCCATTAAGTCA+TGG 0.562237 8_4:-12388071 Msa1314020:CDS
CATCAGTCTGCCATGCAGAA+TGG 0.563367 8_4:+12389556 None:intergenic
CTGCTTAGTTCAATGGCCAG+TGG 0.566870 8_4:+12388970 None:intergenic
TCAATCCTTCCTCGCTAGAA+GGG 0.568116 8_4:+12387458 None:intergenic
CAAATGATTCATCTCTTGGA+AGG 0.568278 8_4:+12389949 None:intergenic
ACTTGGAGCCAAACATGGGT+GGG 0.569230 8_4:-12389285 Msa1314020:CDS
CTATAGTACACTAATGGAGC+CGG 0.569261 8_4:+12390340 None:intergenic
ATGGGCTGCCATTAAGTCAT+GGG 0.569354 8_4:-12388070 Msa1314020:CDS
TGAGTTGCAAACAAAGTGGA+TGG 0.569767 8_4:+12390660 None:intergenic
GCGATTTCCCTTACCCTCGA+AGG 0.569933 8_4:-12390174 Msa1314020:CDS
GTCTCCCAATGTTGGTATGG+AGG 0.572486 8_4:+12390819 None:intergenic
GTGCTTGTTCACCGTCAGAT+CGG 0.573008 8_4:+12389715 None:intergenic
AGAGTTGAAGACTTTAAGAG+GGG 0.573240 8_4:-12390311 Msa1314020:CDS
TGCTTGTGTCTTGTAACCAT+AGG 0.574107 8_4:+12392352 None:intergenic
GAGACATTGAGGAATCGGTA+TGG 0.574624 8_4:-12387511 Msa1314020:CDS
ATTTAGAGGAGTAGCTGTTG+AGG 0.574648 8_4:-12388163 Msa1314020:intron
GAGAGAGCGCACATCTTGAA+AGG 0.575061 8_4:+12389812 None:intergenic
AGAACGGCCTAAGAAGGAAG+TGG 0.575241 8_4:+12392108 None:intergenic
ATCTCCATCTAAAATGGTCA+TGG 0.575487 8_4:-12387412 Msa1314020:exon
AACTTGGAGCCAAACATGGG+TGG 0.576306 8_4:-12389286 Msa1314020:CDS
TTGCAAGGGAGATGATTGCT+GGG 0.576355 8_4:-12389527 Msa1314020:CDS
GTTTACTTGCCCGCAAGTGA+AGG 0.576493 8_4:-12388907 Msa1314020:CDS
AATAAATGCAAGTGAGACAA+AGG 0.579607 8_4:-12389043 Msa1314020:CDS
TCCATGAGTTGCAAACAAAG+TGG 0.581030 8_4:+12390656 None:intergenic
TGATAAGCACGAAAAGGTGA+AGG 0.581687 8_4:-12392260 Msa1314020:CDS
TTCCTCAAATATGGAAAGAG+CGG 0.581997 8_4:+12389066 None:intergenic
AGCCAAAAGAAGCCTTCAAG+AGG 0.582036 8_4:-12387588 Msa1314020:CDS
TGATCGTAGGTAAGAAGTGA+GGG 0.582443 8_4:+12387345 None:intergenic
GAGCCGGTGTTTCACTTGGA+AGG 0.583942 8_4:+12390356 None:intergenic
CTTGGAGCCAAACATGGGTG+GGG 0.584070 8_4:-12389284 Msa1314020:CDS
GGAACAATGATGAGACATTG+AGG 0.591650 8_4:-12387522 Msa1314020:CDS
TGCTTTGAATAACAGTGAGA+AGG 0.591999 8_4:-12387377 Msa1314020:three_prime_UTR
ATATATAATAACATGATCGT+AGG 0.592458 8_4:+12387332 None:intergenic
GTAACTACAGATCTCAATTG+AGG 0.593972 8_4:+12389864 None:intergenic
TGAGTATGATGAGCTTGCTA+AGG 0.595579 8_4:-12387758 Msa1314020:CDS
GCACCACCAATGATACCAGT+AGG 0.595832 8_4:+12392175 None:intergenic
CTTCAAGTGTCAAACTCACA+AGG 0.596098 8_4:+12390701 None:intergenic
GGACAGGAAACATTTCTGAA+AGG 0.599176 8_4:-12390850 Msa1314020:CDS
AAGATGACTTCATTGGTGAA+AGG 0.599422 8_4:-12392289 Msa1314020:CDS
CAACAACAAAAGCCTTGGCA+AGG 0.602926 8_4:+12388863 None:intergenic
AAGGATAATCCTCTATCAGA+AGG 0.603529 8_4:+12388115 None:intergenic
TTTGAATGGGACAGTGACAT+GGG 0.604319 8_4:-12390772 Msa1314020:CDS
TTCATTGTGTCACGATAATG+TGG 0.604329 8_4:+12388630 None:intergenic
CTAAGCAGGCCACACCCTCA+AGG 0.605346 8_4:-12388955 Msa1314020:CDS
TTAGCAAGCTCATCATACTC+AGG 0.608098 8_4:+12387760 None:intergenic
TTAAGGATATATCCTCCATA+CGG 0.608467 8_4:+12387826 None:intergenic
CTTGAAGATATTCCAAACCA+TGG 0.608577 8_4:-12390685 Msa1314020:CDS
GACTGATGAGGAATTTGCAA+GGG 0.610600 8_4:-12389541 Msa1314020:CDS
CTTGAAAGGTGTTAAACTCG+GGG 0.611801 8_4:+12389826 None:intergenic
ACTACCAGAAGACCTATTTG+AGG 0.611884 8_4:-12387735 Msa1314020:CDS
ATGATCGTAGGTAAGAAGTG+AGG 0.612019 8_4:+12387344 None:intergenic
CGAATGGCTCAACAACAGCA+TGG 0.613252 8_4:+12388709 None:intergenic
AACAAATAGGCATCTTAGTG+TGG 0.616014 8_4:-12388679 Msa1314020:CDS
TTGGCTCGTCAAATTCTTGG+GGG 0.616447 8_4:-12390202 Msa1314020:CDS
ATTCTGGAAAGAACTTGTAG+AGG 0.619472 8_4:-12387980 Msa1314020:CDS
AAATGTCTTGGTCAATGCAG+AGG 0.620032 8_4:-12388589 Msa1314020:CDS
AATATGGAAAGAGCGGGTCG+TGG 0.621020 8_4:+12389073 None:intergenic
AGCAATCCATATAAGGATGG+TGG 0.623898 8_4:+12387885 None:intergenic
ATTAGTGCTACAAGTGCTGA+TGG 0.624947 8_4:-12392070 Msa1314020:intron
AGACTGATGAGGAATTTGCA+AGG 0.627020 8_4:-12389542 Msa1314020:CDS
GAACTTGTAGAGGTTGGTCA+TGG 0.628028 8_4:-12387970 Msa1314020:CDS
GATAAGCACGAAAAGGTGAA+GGG 0.628987 8_4:-12392259 Msa1314020:CDS
AATGTCTTGGTCAATGCAGA+GGG 0.629733 8_4:-12388588 Msa1314020:CDS
GAATGGCTCAACAACAGCAT+GGG 0.631116 8_4:+12388710 None:intergenic
AAGGCGGAGACCAGTAGGAG+AGG 0.631668 8_4:+12388134 None:intergenic
TTCTGCATGGCAGACTGATG+AGG 0.631772 8_4:-12389553 Msa1314020:CDS
GAGGAAGGATTGACTTGCAG+AGG 0.631778 8_4:-12387448 Msa1314020:CDS
GTGCGCTCTCTCTACGAGGG+TGG 0.634384 8_4:-12389801 Msa1314020:CDS
CCTTGTTGGCAAAGAAGATG+CGG 0.636835 8_4:+12390605 None:intergenic
AACAGGACTATAATGTTACA+AGG 0.637286 8_4:+12387243 None:intergenic
TCAACTTGAGAGCTATAGAA+CGG 0.637447 8_4:+12392092 None:intergenic
GTTTAAGATGCAAACTCGTG+AGG 0.640174 8_4:-12387923 Msa1314020:CDS
ATCTGGCTTAGTACATCAGT+AGG 0.640323 8_4:+12389768 None:intergenic
CACCACCAATGATACCAGTA+GGG 0.641870 8_4:+12392176 None:intergenic
TGAAGCAATCCATATAAGGA+TGG 0.642489 8_4:+12387882 None:intergenic
CCATTATAGAGGTCTTGTCA+AGG 0.646315 8_4:-12387675 Msa1314020:CDS
AGATGTGCGCTCTCTCTACG+AGG 0.646720 8_4:-12389805 Msa1314020:CDS
ATACCTTCCAAGTGAAACAC+CGG 0.647734 8_4:-12390359 Msa1314020:CDS
GAAAACTTGGAGCCAAACAT+GGG 0.647756 8_4:-12389289 Msa1314020:CDS
GGACCAAAACTATCACCTTG+AGG 0.648019 8_4:+12388940 None:intergenic
TCTCTTGGAAGGTAAACAGT+GGG 0.653344 8_4:+12389960 None:intergenic
ATCTCTTGGAAGGTAAACAG+TGG 0.662459 8_4:+12389959 None:intergenic
TTTGGACAATATCCGTATGG+AGG 0.662709 8_4:-12387838 Msa1314020:CDS
GTTGGCAAAGAAGATGCGGT+CGG 0.663469 8_4:+12390609 None:intergenic
GAACAGTGGACCATTCTGCA+TGG 0.669132 8_4:-12389566 Msa1314020:intron
TCTGCTTTACCCTTCTAGCG+AGG 0.672151 8_4:-12387467 Msa1314020:CDS
GATAATCCTCTATCAGAAGG+CGG 0.677768 8_4:+12388118 None:intergenic
CGAAAAGGTGAAGGGAACTG+TGG 0.680100 8_4:-12392251 Msa1314020:CDS
GCTGCCATTAAGTCATGGGT+TGG 0.682139 8_4:-12388066 Msa1314020:CDS
GATGTGCGCTCTCTCTACGA+GGG 0.685367 8_4:-12389804 Msa1314020:CDS
GATTTCCCTTACCCTCGAAG+GGG 0.685881 8_4:-12390172 Msa1314020:CDS
ACTTAAAGAATGCCACATGG+TGG 0.703250 8_4:-12387945 Msa1314020:CDS
TTGCATCTTAAACCACCATG+TGG 0.713418 8_4:+12387933 None:intergenic
TGCAAGGGAGATGATTGCTG+GGG 0.719674 8_4:-12389526 Msa1314020:CDS
GTGACTTAAAGAATGCCACA+TGG 0.775897 8_4:-12387948 Msa1314020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTATATTGAAAAAGAT+TGG + chr8_4:12388054-12388073 None:intergenic 10.0%
!!! AAATAATTTCAATATTTTAG+TGG + chr8_4:12388557-12388576 None:intergenic 10.0%
!!! TTTTGTATGAAATATATTAT+TGG + chr8_4:12389982-12390001 None:intergenic 10.0%
!!! TTTTTAATTAAACTAATGGT+TGG - chr8_4:12387598-12387617 Msa1314020:CDS 15.0%
!! TGCATAATATAATATATGTA+GGG + chr8_4:12387678-12387697 None:intergenic 15.0%
!! TTGCATAATATAATATATGT+AGG + chr8_4:12387679-12387698 None:intergenic 15.0%
!! ATATATCTACTGTATATTAA+AGG - chr8_4:12387781-12387800 Msa1314020:CDS 15.0%
!! TTCAAATATAAAGAAATAGA+GGG + chr8_4:12387994-12388013 None:intergenic 15.0%
!!! CTCTTAATTGATTTTAAAAT+TGG - chr8_4:12388019-12388038 Msa1314020:CDS 15.0%
!!! AATACTGACAATTAAAATTT+TGG + chr8_4:12388189-12388208 None:intergenic 15.0%
!!! ATATTGGTTATAAAATAATC+AGG - chr8_4:12388335-12388354 Msa1314020:intron 15.0%
!! TTTATAATTAGTGACATTAT+TGG - chr8_4:12390216-12390235 Msa1314020:CDS 15.0%
!!! CATACAAAAAATATGTTTTA+GGG + chr8_4:12391406-12391425 None:intergenic 15.0%
!!! ACATACAAAAAATATGTTTT+AGG + chr8_4:12391407-12391426 None:intergenic 15.0%
!! GCTTAAATGTATAATATCTT+AGG + chr8_4:12387299-12387318 None:intergenic 20.0%
!! ATAAAAAATGAGAAAGAGAA+AGG + chr8_4:12387576-12387595 None:intergenic 20.0%
!! GCATAATATAATATATGTAG+GGG + chr8_4:12387677-12387696 None:intergenic 20.0%
!! AGAAATAAATAGAGTGAAAA+AGG + chr8_4:12387733-12387752 None:intergenic 20.0%
!!! ATTTTGTCATTTGGTATAAA+TGG - chr8_4:12387890-12387909 Msa1314020:CDS 20.0%
!! GTTCAAATATAAAGAAATAG+AGG + chr8_4:12387995-12388014 None:intergenic 20.0%
!! TGAAAACAAAAGAGAAAATA+AGG + chr8_4:12388280-12388299 None:intergenic 20.0%
!! AAAGAAAGAAAGAAAAAACT+AGG + chr8_4:12388421-12388440 None:intergenic 20.0%
!! CCTATAAAAATGTCAAAAAT+TGG + chr8_4:12388723-12388742 None:intergenic 20.0%
!!! CCAATTTTTGACATTTTTAT+AGG - chr8_4:12388720-12388739 Msa1314020:CDS 20.0%
!!! TTTCAGCATTAATTTTGAAT+GGG - chr8_4:12388827-12388846 Msa1314020:CDS 20.0%
!!! AATTTTTATTCTTACCTTGT+TGG + chr8_4:12389024-12389043 None:intergenic 20.0%
!!! TCATTCAAAATATCAAGTTT+TGG + chr8_4:12389217-12389236 None:intergenic 20.0%
!! GTATGAAATATATTATTGGT+AGG + chr8_4:12389978-12389997 None:intergenic 20.0%
!! AATCATATATAGAAAGCTAA+TGG - chr8_4:12390000-12390019 Msa1314020:intron 20.0%
!! TTCATGAGTTAATCATAAAT+AGG + chr8_4:12390856-12390875 None:intergenic 20.0%
!!! CATAAATTTTTATGTTCATG+TGG - chr8_4:12391212-12391231 Msa1314020:intron 20.0%
!! ATATATAATAACATGATCGT+AGG + chr8_4:12392283-12392302 None:intergenic 20.0%
!!! TTATAGTAGTTGATGAGATT+AGG + chr8_4:12387227-12387246 None:intergenic 25.0%
! ATTAAAGGTAGTATAGCTAA+TGG - chr8_4:12387796-12387815 Msa1314020:CDS 25.0%
! TCCAATAAGTGTGATATATT+TGG - chr8_4:12387842-12387861 Msa1314020:CDS 25.0%
!! GGACTTTATATTTTGTCATT+TGG - chr8_4:12387881-12387900 Msa1314020:CDS 25.0%
!! TGGCAAATTTTAAATAGCTA+TGG + chr8_4:12387970-12387989 None:intergenic 25.0%
! AATATAAAGAAATAGAGGGA+TGG + chr8_4:12387990-12388009 None:intergenic 25.0%
! GTGACTTTAATGTAGAATAT+TGG - chr8_4:12388319-12388338 Msa1314020:intron 25.0%
! TCTAGTCTAGTTATATGAAA+GGG + chr8_4:12388580-12388599 None:intergenic 25.0%
!! TTTGACATTTTTATAGGAAC+TGG - chr8_4:12388726-12388745 Msa1314020:intron 25.0%
!! ATTTTTATAGGAACTGGAAA+AGG - chr8_4:12388732-12388751 Msa1314020:intron 25.0%
!! CTTTCAGCATTAATTTTGAA+TGG - chr8_4:12388826-12388845 Msa1314020:CDS 25.0%
! TACATCAAGAATTATATGCA+AGG - chr8_4:12388879-12388898 Msa1314020:CDS 25.0%
! TTATGATGTCTACAATGATT+TGG - chr8_4:12389364-12389383 Msa1314020:intron 25.0%
! TATGATGTCTACAATGATTT+GGG - chr8_4:12389365-12389384 Msa1314020:intron 25.0%
! AAGAAAAACTAAAACAGGTT+AGG - chr8_4:12389475-12389494 Msa1314020:intron 25.0%
!!! AATCTTTAGAATCATAAGCT+AGG + chr8_4:12389563-12389582 None:intergenic 25.0%
!!! GCTTATGATTCTAAAGATTT+TGG - chr8_4:12389564-12389583 Msa1314020:intron 25.0%
!! TATATACCTTGAATCACTTT+TGG + chr8_4:12389937-12389956 None:intergenic 25.0%
! AATATATTATTGGTAGGACT+AGG + chr8_4:12389972-12389991 None:intergenic 25.0%
! AAATTTCTTACTATGAACAG+TGG - chr8_4:12390032-12390051 Msa1314020:intron 25.0%
!!! TGTTTTTTTTCTTTCCAAAG+TGG - chr8_4:12390388-12390407 Msa1314020:intron 25.0%
!! GTATGTACAATCTATTGTTT+TGG + chr8_4:12390512-12390531 None:intergenic 25.0%
!!! GCATTTATTTTCCTCAAATA+TGG + chr8_4:12390558-12390577 None:intergenic 25.0%
! ATTATCTTGCAAGAAAAGAA+TGG + chr8_4:12390610-12390629 None:intergenic 25.0%
!! ATTCTTTTCTTGCAAGATAA+TGG - chr8_4:12390609-12390628 Msa1314020:CDS 25.0%
! ATTAATGAGATTCATACCAA+TGG + chr8_4:12390806-12390825 None:intergenic 25.0%
! TTATTGAATCAACTTTCTTG+TGG - chr8_4:12391049-12391068 Msa1314020:intron 25.0%
! TATTGAATCAACTTTCTTGT+GGG - chr8_4:12391050-12391069 Msa1314020:intron 25.0%
!!! TACCTTTTGATTAGATCATT+AGG + chr8_4:12391141-12391160 None:intergenic 25.0%
! AAAAGGTAACCTTATATCTT+TGG - chr8_4:12391153-12391172 Msa1314020:intron 25.0%
! CTTATACATTTCTATTAGAC+AGG - chr8_4:12391318-12391337 Msa1314020:intron 25.0%
!!! ATGAATCTTCTACTTTTTGT+TGG + chr8_4:12391816-12391835 None:intergenic 25.0%
! TTCCTGAAATAAAACCATTA+AGG + chr8_4:12392408-12392427 None:intergenic 25.0%
! TTTGAACCATATGAGATAAT+TGG + chr8_4:12392431-12392450 None:intergenic 25.0%
! TATCTCATATGGTTCAAATA+TGG - chr8_4:12392433-12392452 Msa1314020:five_prime_UTR 25.0%
! ATTTTAAACGTGGAGAAGTA+GGG - chr8_4:12387630-12387649 Msa1314020:CDS 30.0%
GCCAAATATATCACACTTAT+TGG + chr8_4:12387846-12387865 None:intergenic 30.0%
GGTATCAAAAACTCTTAATG+TGG + chr8_4:12388239-12388258 None:intergenic 30.0%
AGGTAAATCTTAATGAGTTG+CGG + chr8_4:12388260-12388279 None:intergenic 30.0%
AAGAGAGAAAAGAGAGAAAA+TGG + chr8_4:12388451-12388470 None:intergenic 30.0%
!!! TATTTTAGTGGTGACTGATT+GGG + chr8_4:12388545-12388564 None:intergenic 30.0%
!!! ATATTTTAGTGGTGACTGAT+TGG + chr8_4:12388546-12388565 None:intergenic 30.0%
GTCTAGTCTAGTTATATGAA+AGG + chr8_4:12388581-12388600 None:intergenic 30.0%
TCATATAACTAGACTAGACT+AGG - chr8_4:12388582-12388601 Msa1314020:CDS 30.0%
TGACCAAGTAAAACGATAAA+TGG - chr8_4:12388611-12388630 Msa1314020:CDS 30.0%
! GATCCATTTATCGTTTTACT+TGG + chr8_4:12388617-12388636 None:intergenic 30.0%
!! GTTTTTAGAAATGTGTGTAG+AGG - chr8_4:12389095-12389114 Msa1314020:CDS 30.0%
GCTATATAGCTATGATAAAG+TGG + chr8_4:12389177-12389196 None:intergenic 30.0%
TCTTGTCTATAGTACACTAA+TGG + chr8_4:12389281-12389300 None:intergenic 30.0%
! AAGAGTTGAAGACTTTAAGA+GGG - chr8_4:12389300-12389319 Msa1314020:CDS 30.0%
!!! TGTTTTAGTTTTTCTTCTGC+CGG + chr8_4:12389471-12389490 None:intergenic 30.0%
CAACCAAAAAACACATGTTT+AGG + chr8_4:12389527-12389546 None:intergenic 30.0%
!! ATCTTGAAAGGTGTTAAACT+CGG + chr8_4:12389791-12389810 None:intergenic 30.0%
ACACATCATCAAAAAACTCT+CGG - chr8_4:12390116-12390135 Msa1314020:intron 30.0%
!!! TTGGTTGCTACTTTTAATTC+AGG - chr8_4:12390235-12390254 Msa1314020:CDS 30.0%
AAGCTAGATAGCCAAAAATT+TGG - chr8_4:12390275-12390294 Msa1314020:CDS 30.0%
!!! TGGTGTTATCACCAAATTTT+TGG + chr8_4:12390289-12390308 None:intergenic 30.0%
CACCATAACTAAAGAAAACT+TGG - chr8_4:12390310-12390329 Msa1314020:CDS 30.0%
! CTCCAAGTTTTCTTTAGTTA+TGG + chr8_4:12390315-12390334 None:intergenic 30.0%
AATAAATGCAAGTGAGACAA+AGG - chr8_4:12390569-12390588 Msa1314020:intron 30.0%
ATTTACAACAACAAAAGCCT+TGG + chr8_4:12390757-12390776 None:intergenic 30.0%
GAAGCAAGAGTTTATGAATA+GGG + chr8_4:12390963-12390982 None:intergenic 30.0%
ATTGAATCAACTTTCTTGTG+GGG - chr8_4:12391051-12391070 Msa1314020:intron 30.0%
TGCCTAATGATCTAATCAAA+AGG - chr8_4:12391136-12391155 Msa1314020:intron 30.0%
AATGACTGACCAAAGATATA+AGG + chr8_4:12391165-12391184 None:intergenic 30.0%
! TTTTTATGTTCATGTGGTGT+CGG - chr8_4:12391218-12391237 Msa1314020:intron 30.0%
!!! CCATTTTACAACTGTTTTTG+AGG + chr8_4:12391353-12391372 None:intergenic 30.0%
CCTCAAAAACAGTTGTAAAA+TGG - chr8_4:12391350-12391369 Msa1314020:intron 30.0%
!! TTCTGATGGACTAGAAATAT+GGG - chr8_4:12391524-12391543 Msa1314020:intron 30.0%
TTAAGGATATATCCTCCATA+CGG + chr8_4:12391789-12391808 None:intergenic 30.0%
!!! ATCTTCTACTTTTTGTTGGT+CGG + chr8_4:12391812-12391831 None:intergenic 30.0%
!! TCAGTAAGAGTATCATTCTT+TGG + chr8_4:12391912-12391931 None:intergenic 30.0%
ATAGAATTGAAGGTGACAAT+TGG - chr8_4:12391988-12392007 Msa1314020:intron 30.0%
! TTTTAGATGGAGATACTGTT+GGG + chr8_4:12392194-12392213 None:intergenic 30.0%
! ATTTTAGATGGAGATACTGT+TGG + chr8_4:12392195-12392214 None:intergenic 30.0%
AACAGTATCTCCATCTAAAA+TGG - chr8_4:12392194-12392213 Msa1314020:CDS 30.0%
AACAGGACTATAATGTTACA+AGG + chr8_4:12392372-12392391 None:intergenic 30.0%
!!! AGCCTTAATGGTTTTATTTC+AGG - chr8_4:12392403-12392422 Msa1314020:five_prime_UTR 30.0%
TAAATACGAACCATTCCCTA+TGG - chr8_4:12387244-12387263 Msa1314020:three_prime_UTR 35.0%
AGCACTAAAGATGACTTCAT+TGG - chr8_4:12387316-12387335 Msa1314020:three_prime_UTR 35.0%
AAGATGACTTCATTGGTGAA+AGG - chr8_4:12387323-12387342 Msa1314020:three_prime_UTR 35.0%
TCTCTTTGATAAGCACGAAA+AGG - chr8_4:12387346-12387365 Msa1314020:three_prime_UTR 35.0%
TCAACTTGAGAGCTATAGAA+CGG + chr8_4:12387523-12387542 None:intergenic 35.0%
! CATTTTAAACGTGGAGAAGT+AGG - chr8_4:12387629-12387648 Msa1314020:CDS 35.0%
TCTCTGTGAACTAACTCAAT+TGG + chr8_4:12387710-12387729 None:intergenic 35.0%
AAGTGTGATATATTTGGCGT+TGG - chr8_4:12387848-12387867 Msa1314020:CDS 35.0%
TTGGTATAAATGGAACTACG+TGG - chr8_4:12387900-12387919 Msa1314020:CDS 35.0%
TGGTATAAATGGAACTACGT+GGG - chr8_4:12387901-12387920 Msa1314020:CDS 35.0%
GGTAAAGAGATCATAGAAGT+AGG + chr8_4:12388086-12388105 None:intergenic 35.0%
GGTAAAAGAGTCTAAGTAGT+CGG + chr8_4:12388107-12388126 None:intergenic 35.0%
TGATTGGGAAAATACTTGTG+TGG + chr8_4:12388530-12388549 None:intergenic 35.0%
!! TTTTGTTTGTCTCCCAATGT+TGG + chr8_4:12388804-12388823 None:intergenic 35.0%
TTCTTGATGTAAAAAGCTCC+AGG + chr8_4:12388870-12388889 None:intergenic 35.0%
CTTGAAGATATTCCAAACCA+TGG - chr8_4:12388927-12388946 Msa1314020:CDS 35.0%
ACATCAGAGTTGAAGAGATT+AGG + chr8_4:12389138-12389157 None:intergenic 35.0%
GAAGAGTTGAAGACTTTAAG+AGG - chr8_4:12389299-12389318 Msa1314020:CDS 35.0%
! AGAGTTGAAGACTTTAAGAG+GGG - chr8_4:12389301-12389320 Msa1314020:CDS 35.0%
!! AATTGGCTCGTCAAATTCTT+GGG - chr8_4:12389408-12389427 Msa1314020:intron 35.0%
GGCAGAAGAAAAACTAAAAC+AGG - chr8_4:12389470-12389489 Msa1314020:intron 35.0%
CAAAATATGGCACAAGTGTT+TGG + chr8_4:12389503-12389522 None:intergenic 35.0%
! CAAACACTTGTGCCATATTT+TGG - chr8_4:12389501-12389520 Msa1314020:CDS 35.0%
CACATGTTTAGGCCAAAATA+TGG + chr8_4:12389516-12389535 None:intergenic 35.0%
!!! TGGCCTAAACATGTGTTTTT+TGG - chr8_4:12389521-12389540 Msa1314020:CDS 35.0%
TCATAAGCTAGGTAAACATC+TGG + chr8_4:12389552-12389571 None:intergenic 35.0%
CAAATGATTCATCTCTTGGA+AGG + chr8_4:12389666-12389685 None:intergenic 35.0%
CTTCCAAGAGATGAATCATT+TGG - chr8_4:12389664-12389683 Msa1314020:intron 35.0%
TGTCCAAATGATTCATCTCT+TGG + chr8_4:12389670-12389689 None:intergenic 35.0%
GTAACTACAGATCTCAATTG+AGG + chr8_4:12389751-12389770 None:intergenic 35.0%
!! TCTTGAAAGGTGTTAAACTC+GGG + chr8_4:12389790-12389809 None:intergenic 35.0%
! ACAATGGTATTGGACTAATC+TGG + chr8_4:12389864-12389883 None:intergenic 35.0%
TAGTCCAATACCATTGTTCA+AGG - chr8_4:12389867-12389886 Msa1314020:CDS 35.0%
AGTTCCTTGAACAATGGTAT+TGG + chr8_4:12389874-12389893 None:intergenic 35.0%
!! ATACCTTGAATCACTTTTGG+TGG + chr8_4:12389934-12389953 None:intergenic 35.0%
!!! GAGAGTTTTTTGATGATGTG+TGG + chr8_4:12390117-12390136 None:intergenic 35.0%
! GTTTTCTTTAGTTATGGTGC+TGG + chr8_4:12390309-12390328 None:intergenic 35.0%
! AAAATTCACGAATGCCACTT+TGG + chr8_4:12390405-12390424 None:intergenic 35.0%
! TGGCATTCGTGAATTTTGTT+CGG - chr8_4:12390408-12390427 Msa1314020:intron 35.0%
! AATTTGAAATCTGTCCCTTG+AGG - chr8_4:12390436-12390455 Msa1314020:intron 35.0%
AGTCGATCTTATAACCTCAA+GGG + chr8_4:12390453-12390472 None:intergenic 35.0%
AAGTCGATCTTATAACCTCA+AGG + chr8_4:12390454-12390473 None:intergenic 35.0%
! ATAAGATCGACTTTAACCAC+TGG - chr8_4:12390461-12390480 Msa1314020:intron 35.0%
! TAAGATCGACTTTAACCACT+GGG - chr8_4:12390462-12390481 Msa1314020:intron 35.0%
TTCCTCAAATATGGAAAGAG+CGG + chr8_4:12390549-12390568 None:intergenic 35.0%
!! AAGAATGGTTCTAGTAGCAT+AGG + chr8_4:12390595-12390614 None:intergenic 35.0%
! CTATTTGTTGCTATGACGAA+TGG + chr8_4:12390922-12390941 None:intergenic 35.0%
CATTCGTCATAGCAACAAAT+AGG - chr8_4:12390920-12390939 Msa1314020:intron 35.0%
AACAAATAGGCATCTTAGTG+TGG - chr8_4:12390933-12390952 Msa1314020:intron 35.0%
GGAAGCAAGAGTTTATGAAT+AGG + chr8_4:12390964-12390983 None:intergenic 35.0%
TTCATTGTGTCACGATAATG+TGG + chr8_4:12390985-12391004 None:intergenic 35.0%
! AATGTCTGCTGTTGTTTACA+AGG - chr8_4:12391089-12391108 Msa1314020:intron 35.0%
GATTGGAATTTCATTGAGCA+AGG - chr8_4:12391111-12391130 Msa1314020:intron 35.0%
!! CTTCCTTGCTTGTTATTTAG+AGG - chr8_4:12391435-12391454 Msa1314020:intron 35.0%
ACTCCTCTAAATAACAAGCA+AGG + chr8_4:12391441-12391460 None:intergenic 35.0%
AAGGATAATCCTCTATCAGA+AGG + chr8_4:12391500-12391519 None:intergenic 35.0%
GATTATCCTTATGCTTCTGA+TGG - chr8_4:12391510-12391529 Msa1314020:intron 35.0%
!! CTTCTGATGGACTAGAAATA+TGG - chr8_4:12391523-12391542 Msa1314020:intron 35.0%
! ATTCTGGAAAGAACTTGTAG+AGG - chr8_4:12391632-12391651 Msa1314020:intron 35.0%
TGAAGCAATCCATATAAGGA+TGG + chr8_4:12391733-12391752 None:intergenic 35.0%
AACTTTGGACAATATCCGTA+TGG - chr8_4:12391771-12391790 Msa1314020:intron 35.0%
!! TACTTTTTGTTGGTCGGTTA+AGG + chr8_4:12391806-12391825 None:intergenic 35.0%
!! TACTGACTTGACCATTATAG+AGG - chr8_4:12391926-12391945 Msa1314020:intron 35.0%
TACCTTGGAGATAGAATTGA+AGG - chr8_4:12391978-12391997 Msa1314020:intron 35.0%
TTGAGCAAAAACTCACTCAA+AGG - chr8_4:12392069-12392088 Msa1314020:intron 35.0%
ATGATGAGACATTGAGGAAT+CGG - chr8_4:12392096-12392115 Msa1314020:CDS 35.0%
! ATCTCCATCTAAAATGGTCA+TGG - chr8_4:12392200-12392219 Msa1314020:CDS 35.0%
! ACAACCATGACCATTTTAGA+TGG + chr8_4:12392207-12392226 None:intergenic 35.0%
! TGCTTTGAATAACAGTGAGA+AGG - chr8_4:12392235-12392254 Msa1314020:CDS 35.0%
TGTATCAAATGCAGCCTTAA+TGG - chr8_4:12392391-12392410 Msa1314020:five_prime_UTR 35.0%
CAGGAACCAATTATCTCATA+TGG - chr8_4:12392422-12392441 Msa1314020:five_prime_UTR 35.0%
TGTCTTGTAACCATAGGGAA+TGG + chr8_4:12387257-12387276 None:intergenic 40.0%
GCTTGTGTCTTGTAACCATA+GGG + chr8_4:12387262-12387281 None:intergenic 40.0%
TGCTTGTGTCTTGTAACCAT+AGG + chr8_4:12387263-12387282 None:intergenic 40.0%
TGATAAGCACGAAAAGGTGA+AGG - chr8_4:12387352-12387371 Msa1314020:three_prime_UTR 40.0%
GATAAGCACGAAAAGGTGAA+GGG - chr8_4:12387353-12387372 Msa1314020:three_prime_UTR 40.0%
AACATCACCAATAGCACCTA+TGG + chr8_4:12387462-12387481 None:intergenic 40.0%
!! ATTAGTGCTACAAGTGCTGA+TGG - chr8_4:12387542-12387561 Msa1314020:CDS 40.0%
! GAGCTCACACATTTTAAACG+TGG - chr8_4:12387620-12387639 Msa1314020:CDS 40.0%
!!! TTTGGCGTTGGTAACTGTTT+TGG - chr8_4:12387860-12387879 Msa1314020:CDS 40.0%
GGTATAAATGGAACTACGTG+GGG - chr8_4:12387902-12387921 Msa1314020:CDS 40.0%
GTATAAATGGAACTACGTGG+GGG - chr8_4:12387903-12387922 Msa1314020:CDS 40.0%
! ACTCTTTTACCAACACTGTG+TGG - chr8_4:12388116-12388135 Msa1314020:CDS 40.0%
AAGTGGTAGACATTTGTACG+TGG - chr8_4:12388142-12388161 Msa1314020:CDS 40.0%
TTGTACGTGGAGGATATCTT+TGG - chr8_4:12388155-12388174 Msa1314020:CDS 40.0%
TCTCTTCTCTCCCATTTCTT+TGG - chr8_4:12388472-12388491 Msa1314020:intron 40.0%
GTGGTCACAACCAAAGAAAT+GGG + chr8_4:12388485-12388504 None:intergenic 40.0%
TGTGGTCACAACCAAAGAAA+TGG + chr8_4:12388486-12388505 None:intergenic 40.0%
TTTGGTTGTGACCACACAAT+GGG - chr8_4:12388490-12388509 Msa1314020:CDS 40.0%
GAAAATACTTGTGTGGACCA+GGG + chr8_4:12388523-12388542 None:intergenic 40.0%
GGAACTGGAAAAGGAAAAGT+TGG - chr8_4:12388741-12388760 Msa1314020:intron 40.0%
TGGAAAAGGAAAAGTTGGAC+AGG - chr8_4:12388746-12388765 Msa1314020:intron 40.0%
GGACAGGAAACATTTCTGAA+AGG - chr8_4:12388762-12388781 Msa1314020:intron 40.0%
TCTTACCTCCATACCAACAT+TGG - chr8_4:12388788-12388807 Msa1314020:intron 40.0%
CTTACCTCCATACCAACATT+GGG - chr8_4:12388789-12388808 Msa1314020:intron 40.0%
TTTGTCTCCCAATGTTGGTA+TGG + chr8_4:12388799-12388818 None:intergenic 40.0%
! TTTTGAATGGGACAGTGACA+TGG - chr8_4:12388839-12388858 Msa1314020:CDS 40.0%
TTTGAATGGGACAGTGACAT+GGG - chr8_4:12388840-12388859 Msa1314020:CDS 40.0%
CTTCAAGTGTCAAACTCACA+AGG + chr8_4:12388914-12388933 None:intergenic 40.0%
AAACAAAGTGGATGGATCCA+TGG + chr8_4:12388947-12388966 None:intergenic 40.0%
TGAGTTGCAAACAAAGTGGA+TGG + chr8_4:12388955-12388974 None:intergenic 40.0%
! TCCACTTTGTTTGCAACTCA+TGG - chr8_4:12388955-12388974 Msa1314020:CDS 40.0%
TCCATGAGTTGCAAACAAAG+TGG + chr8_4:12388959-12388978 None:intergenic 40.0%
ATACCTTCCAAGTGAAACAC+CGG - chr8_4:12389253-12389272 Msa1314020:intron 40.0%
CTATAGTACACTAATGGAGC+CGG + chr8_4:12389275-12389294 None:intergenic 40.0%
! TTGAAGACTTTAAGAGGGGA+TGG - chr8_4:12389305-12389324 Msa1314020:CDS 40.0%
AGAATTTGACGAGCCAATTG+AGG + chr8_4:12389407-12389426 None:intergenic 40.0%
!! CAATTGGCTCGTCAAATTCT+TGG - chr8_4:12389407-12389426 Msa1314020:intron 40.0%
!! ATTGGCTCGTCAAATTCTTG+GGG - chr8_4:12389409-12389428 Msa1314020:intron 40.0%
TCTCTTGGAAGGTAAACAGT+GGG + chr8_4:12389655-12389674 None:intergenic 40.0%
ATCTCTTGGAAGGTAAACAG+TGG + chr8_4:12389656-12389675 None:intergenic 40.0%
!! CTTGAAAGGTGTTAAACTCG+GGG + chr8_4:12389789-12389808 None:intergenic 40.0%
! ATCTGGCTTAGTACATCAGT+AGG + chr8_4:12389847-12389866 None:intergenic 40.0%
CGGAAAAGTTCCTTGAACAA+TGG + chr8_4:12389880-12389899 None:intergenic 40.0%
! AAGGAACTTTTCCGATCTGA+CGG - chr8_4:12389886-12389905 Msa1314020:CDS 40.0%
AGACTGATGAGGAATTTGCA+AGG - chr8_4:12390070-12390089 Msa1314020:intron 40.0%
GACTGATGAGGAATTTGCAA+GGG - chr8_4:12390071-12390090 Msa1314020:intron 40.0%
AGAAAACTTGGAGCCAAACA+TGG - chr8_4:12390322-12390341 Msa1314020:CDS 40.0%
GAAAACTTGGAGCCAAACAT+GGG - chr8_4:12390323-12390342 Msa1314020:CDS 40.0%
! GGCATTCGTGAATTTTGTTC+GGG - chr8_4:12390409-12390428 Msa1314020:intron 40.0%
ATGACAAAAGTCAAACCCAG+TGG + chr8_4:12390480-12390499 None:intergenic 40.0%
!! GGGTTTGACTTTTGTCATAC+AGG - chr8_4:12390482-12390501 Msa1314020:intron 40.0%
TCCTCAAATATGGAAAGAGC+GGG + chr8_4:12390548-12390567 None:intergenic 40.0%
!! TAATGGAACTTTGAAGCCAC+TGG - chr8_4:12390626-12390645 Msa1314020:CDS 40.0%
GGCAAGTAAACATTGCTAAC+AGG + chr8_4:12390696-12390715 None:intergenic 40.0%
!! AAGGTGTTGAAGCATCAGTT+TGG - chr8_4:12390724-12390743 Msa1314020:CDS 40.0%
TGAATATCGACATGTGTGAC+AGG - chr8_4:12390872-12390891 Msa1314020:CDS 40.0%
AAATGTCTTGGTCAATGCAG+AGG - chr8_4:12391023-12391042 Msa1314020:intron 40.0%
AATGTCTTGGTCAATGCAGA+GGG - chr8_4:12391024-12391043 Msa1314020:intron 40.0%
CTTGTGGGGAAATTATGCTT+TGG - chr8_4:12391065-12391084 Msa1314020:intron 40.0%
! CTGCTGTTGTTTACAAGGAT+TGG - chr8_4:12391094-12391113 Msa1314020:intron 40.0%
ATTTAGAGGAGTAGCTGTTG+AGG - chr8_4:12391449-12391468 Msa1314020:intron 40.0%
GATAATCCTCTATCAGAAGG+CGG + chr8_4:12391497-12391516 None:intergenic 40.0%
! TCTAGTCCATCAGAAGCATA+AGG + chr8_4:12391519-12391538 None:intergenic 40.0%
TTCACCAACCCATGACTTAA+TGG + chr8_4:12391553-12391572 None:intergenic 40.0%
ATTCTGAACTCCAAGCATTC+TGG - chr8_4:12391616-12391635 Msa1314020:intron 40.0%
CAAGTTCTTTCCAGAATGCT+TGG + chr8_4:12391629-12391648 None:intergenic 40.0%
TGGAAAGAACTTGTAGAGGT+TGG - chr8_4:12391636-12391655 Msa1314020:intron 40.0%
GTGACTTAAAGAATGCCACA+TGG - chr8_4:12391664-12391683 Msa1314020:intron 40.0%
ACTTAAAGAATGCCACATGG+TGG - chr8_4:12391667-12391686 Msa1314020:intron 40.0%
TTGCATCTTAAACCACCATG+TGG + chr8_4:12391682-12391701 None:intergenic 40.0%
! GTTTAAGATGCAAACTCGTG+AGG - chr8_4:12391689-12391708 Msa1314020:intron 40.0%
AAGCTTCCACCATCCTTATA+TGG - chr8_4:12391721-12391740 Msa1314020:intron 40.0%
AGCAATCCATATAAGGATGG+TGG + chr8_4:12391730-12391749 None:intergenic 40.0%
GTGCTGAAGCAATCCATATA+AGG + chr8_4:12391737-12391756 None:intergenic 40.0%
CTTCATGCAGCTGTTAACTT+TGG - chr8_4:12391756-12391775 Msa1314020:intron 40.0%
TTTGGACAATATCCGTATGG+AGG - chr8_4:12391774-12391793 Msa1314020:intron 40.0%
AGAAGATTCATGCCTGAGAA+AGG - chr8_4:12391825-12391844 Msa1314020:intron 40.0%
TTAGCAAGCTCATCATACTC+AGG + chr8_4:12391855-12391874 None:intergenic 40.0%
!! TGAGTATGATGAGCTTGCTA+AGG - chr8_4:12391854-12391873 Msa1314020:intron 40.0%
ACTACCAGAAGACCTATTTG+AGG - chr8_4:12391877-12391896 Msa1314020:intron 40.0%
TTGTCCTCAAATAGGTCTTC+TGG + chr8_4:12391884-12391903 None:intergenic 40.0%
TGGTGTGATTGTCCTCAAAT+AGG + chr8_4:12391892-12391911 None:intergenic 40.0%
CCTTGACAAGACCTCTATAA+TGG + chr8_4:12391940-12391959 None:intergenic 40.0%
! CCATTATAGAGGTCTTGTCA+AGG - chr8_4:12391937-12391956 Msa1314020:intron 40.0%
CACCTTCAATTCTATCTCCA+AGG + chr8_4:12391983-12392002 None:intergenic 40.0%
! AACCTCTTGAAGGCTTCTTT+TGG + chr8_4:12392029-12392048 None:intergenic 40.0%
AAAGAAGCCTTCAAGAGGTT+TGG - chr8_4:12392029-12392048 Msa1314020:intron 40.0%
CTTCTTTCCAAACCTCTTGA+AGG + chr8_4:12392039-12392058 None:intergenic 40.0%
CAAGAGGTTTGGAAAGAAGT+TGG - chr8_4:12392040-12392059 Msa1314020:intron 40.0%
GGAACAATGATGAGACATTG+AGG - chr8_4:12392090-12392109 Msa1314020:CDS 40.0%
TGATCGTAGGTAAGAAGTGA+GGG + chr8_4:12392270-12392289 None:intergenic 40.0%
ATGATCGTAGGTAAGAAGTG+AGG + chr8_4:12392271-12392290 None:intergenic 40.0%
AAGGCTGCATTTGATACAAC+AGG + chr8_4:12392389-12392408 None:intergenic 40.0%
CAAAGCCCTACTGGTATCAT+TGG - chr8_4:12387431-12387450 Msa1314020:CDS 45.0%
CACCACCAATGATACCAGTA+GGG + chr8_4:12387439-12387458 None:intergenic 45.0%
AGCTATAGAACGGCCTAAGA+AGG + chr8_4:12387513-12387532 None:intergenic 45.0%
TGGTAGACATTTGTACGTGG+AGG - chr8_4:12388145-12388164 Msa1314020:CDS 45.0%
CGAGTTCGATTCTCACATCT+AGG + chr8_4:12388213-12388232 None:intergenic 45.0%
TCAGTCGAGAAAGACTTGTG+TGG - chr8_4:12388363-12388382 Msa1314020:intron 45.0%
TGGACCAAGACCACACAATT+GGG - chr8_4:12388383-12388402 Msa1314020:intron 45.0%
CAAACCCAATTGTGTGGTCT+TGG + chr8_4:12388390-12388409 None:intergenic 45.0%
CAAGACCACACAATTGGGTT+TGG - chr8_4:12388388-12388407 Msa1314020:intron 45.0%
TGTGACCAAACCCAATTGTG+TGG + chr8_4:12388396-12388415 None:intergenic 45.0%
CTTTGGTTGTGACCACACAA+TGG - chr8_4:12388489-12388508 Msa1314020:CDS 45.0%
TTGGTTGTGACCACACAATG+GGG - chr8_4:12388491-12388510 Msa1314020:CDS 45.0%
GGAAAATACTTGTGTGGACC+AGG + chr8_4:12388524-12388543 None:intergenic 45.0%
AAGTGGATGGATCCATGGTT+TGG + chr8_4:12388942-12388961 None:intergenic 45.0%
CCTTGTTGGCAAAGAAGATG+CGG + chr8_4:12389010-12389029 None:intergenic 45.0%
! ACTTTAAGAGGGGATGGAAC+AGG - chr8_4:12389311-12389330 Msa1314020:CDS 45.0%
! TTGGCTCGTCAAATTCTTGG+GGG - chr8_4:12389410-12389429 Msa1314020:intron 45.0%
!! CCTTGAATCACTTTTGGTGG+TGG + chr8_4:12389931-12389950 None:intergenic 45.0%
CCACCACCAAAAGTGATTCA+AGG - chr8_4:12389928-12389947 Msa1314020:CDS 45.0%
TTTGCAAGGGAGATGATTGC+TGG - chr8_4:12390084-12390103 Msa1314020:intron 45.0%
TTGCAAGGGAGATGATTGCT+GGG - chr8_4:12390085-12390104 Msa1314020:intron 45.0%
!! CTATCTAGCTTGCTCTTTGG+TGG + chr8_4:12390266-12390285 None:intergenic 45.0%
!! TGGCTATCTAGCTTGCTCTT+TGG + chr8_4:12390269-12390288 None:intergenic 45.0%
ACCCGCTCTTTCCATATTTG+AGG - chr8_4:12390544-12390563 Msa1314020:intron 45.0%
TGCTTCAACACCTTCACTTG+CGG + chr8_4:12390718-12390737 None:intergenic 45.0%
CAACAACAAAAGCCTTGGCA+AGG + chr8_4:12390752-12390771 None:intergenic 45.0%
ATCACCAACTTGTCAGCCAT+TGG - chr8_4:12390787-12390806 Msa1314020:CDS 45.0%
CATACCAATGGCTGACAAGT+TGG + chr8_4:12390794-12390813 None:intergenic 45.0%
GAATGGCTCAACAACAGCAT+GGG + chr8_4:12390905-12390924 None:intergenic 45.0%
TGCACTTGCACGAAATGTCT+TGG - chr8_4:12391011-12391030 Msa1314020:intron 45.0%
! TTATGTTCATGTGGTGTCGG+TGG - chr8_4:12391221-12391240 Msa1314020:intron 45.0%
! TATGGGCTGCCATTAAGTCA+TGG - chr8_4:12391541-12391560 Msa1314020:intron 45.0%
! ATGGGCTGCCATTAAGTCAT+GGG - chr8_4:12391542-12391561 Msa1314020:intron 45.0%
! GAACTTGTAGAGGTTGGTCA+TGG - chr8_4:12391642-12391661 Msa1314020:intron 45.0%
TACTCAGGTGATCCTTTCTC+AGG + chr8_4:12391840-12391859 None:intergenic 45.0%
GCTTCTGATGAGCAATACCT+TGG - chr8_4:12391963-12391982 Msa1314020:intron 45.0%
AGCCAAAAGAAGCCTTCAAG+AGG - chr8_4:12392024-12392043 Msa1314020:intron 45.0%
GAGACATTGAGGAATCGGTA+TGG - chr8_4:12392101-12392120 Msa1314020:CDS 45.0%
AGAGTGTATGGCATCTTCAC+AGG + chr8_4:12392128-12392147 None:intergenic 45.0%
GAAGGGTAAAGCAGAGTGTA+TGG + chr8_4:12392140-12392159 None:intergenic 45.0%
TCAATCCTTCCTCGCTAGAA+GGG + chr8_4:12392157-12392176 None:intergenic 45.0%
!!! ATTTTTTTTAATTAAACTAA+TGG - chr8_4:12387594-12387613 Msa1314020:CDS 5.0%
CGAAAAGGTGAAGGGAACTG+TGG - chr8_4:12387361-12387380 Msa1314020:three_prime_UTR 50.0%
AGCCCTACTGGTATCATTGG+TGG - chr8_4:12387434-12387453 Msa1314020:CDS 50.0%
GCACCACCAATGATACCAGT+AGG + chr8_4:12387440-12387459 None:intergenic 50.0%
!! GGTATCATTGGTGGTGCCAT+AGG - chr8_4:12387443-12387462 Msa1314020:CDS 50.0%
!! GGTGCTATTGGTGATGTTGC+TGG - chr8_4:12387464-12387483 Msa1314020:CDS 50.0%
! GACACTGCCACTTCCTTCTT+AGG - chr8_4:12387497-12387516 Msa1314020:CDS 50.0%
AGAACGGCCTAAGAAGGAAG+TGG + chr8_4:12387507-12387526 None:intergenic 50.0%
AGGGGTTGAGTATCAAACCC+TGG + chr8_4:12387659-12387678 None:intergenic 50.0%
CCACTTATGCCACACAGTGT+TGG + chr8_4:12388128-12388147 None:intergenic 50.0%
CCAACACTGTGTGGCATAAG+TGG - chr8_4:12388125-12388144 Msa1314020:CDS 50.0%
GTGGACCAAGACCACACAAT+TGG - chr8_4:12388382-12388401 Msa1314020:intron 50.0%
TGTGACCACACAATGGGGTT+TGG - chr8_4:12388496-12388515 Msa1314020:CDS 50.0%
GTCTCCCAATGTTGGTATGG+AGG + chr8_4:12388796-12388815 None:intergenic 50.0%
GACAGTGACATGGGAATTCC+TGG - chr8_4:12388849-12388868 Msa1314020:CDS 50.0%
GTTGGCAAAGAAGATGCGGT+CGG + chr8_4:12389006-12389025 None:intergenic 50.0%
CCGCATCTTCTTTGCCAACA+AGG - chr8_4:12389007-12389026 Msa1314020:CDS 50.0%
AATGGAGCCGGTGTTTCACT+TGG + chr8_4:12389263-12389282 None:intergenic 50.0%
! AACAGGAGAGCGCAAGGAAT+GGG - chr8_4:12389328-12389347 Msa1314020:CDS 50.0%
! GCCTGACTCGAAACCTCAAT+TGG - chr8_4:12389391-12389410 Msa1314020:intron 50.0%
! GCCAATTGAGGTTTCGAGTC+AGG + chr8_4:12389395-12389414 None:intergenic 50.0%
CGATTTCCCTTACCCTCGAA+GGG - chr8_4:12389439-12389458 Msa1314020:intron 50.0%
GATTTCCCTTACCCTCGAAG+GGG - chr8_4:12389440-12389459 Msa1314020:intron 50.0%
TTCTTCCCCTTCGAGGGTAA+GGG + chr8_4:12389448-12389467 None:intergenic 50.0%
GGACTTCGAGTCTCACTGTT+AGG + chr8_4:12389634-12389653 None:intergenic 50.0%
! GAGAGAGCGCACATCTTGAA+AGG + chr8_4:12389803-12389822 None:intergenic 50.0%
GTGCTTGTTCACCGTCAGAT+CGG + chr8_4:12389900-12389919 None:intergenic 50.0%
GAACAGTGGACCATTCTGCA+TGG - chr8_4:12390046-12390065 Msa1314020:intron 50.0%
CATCAGTCTGCCATGCAGAA+TGG + chr8_4:12390059-12390078 None:intergenic 50.0%
TTCTGCATGGCAGACTGATG+AGG - chr8_4:12390059-12390078 Msa1314020:intron 50.0%
TGCAAGGGAGATGATTGCTG+GGG - chr8_4:12390086-12390105 Msa1314020:intron 50.0%
AACTTGGAGCCAAACATGGG+TGG - chr8_4:12390326-12390345 Msa1314020:CDS 50.0%
ACTTGGAGCCAAACATGGGT+GGG - chr8_4:12390327-12390346 Msa1314020:CDS 50.0%
AATATGGAAAGAGCGGGTCG+TGG + chr8_4:12390542-12390561 None:intergenic 50.0%
CTGCTTAGTTCAATGGCCAG+TGG + chr8_4:12390645-12390664 None:intergenic 50.0%
CACTGGCCATTGAACTAAGC+AGG - chr8_4:12390643-12390662 Msa1314020:CDS 50.0%
GTGTGGCCTGCTTAGTTCAA+TGG + chr8_4:12390652-12390671 None:intergenic 50.0%
GTTTACTTGCCCGCAAGTGA+AGG - chr8_4:12390705-12390724 Msa1314020:CDS 50.0%
GCTTCAACACCTTCACTTGC+GGG + chr8_4:12390717-12390736 None:intergenic 50.0%
! ATCAGTTTGGCTCCTTGCCA+AGG - chr8_4:12390737-12390756 Msa1314020:CDS 50.0%
!! GCTGACAAGTTGGTGATAGC+AGG + chr8_4:12390784-12390803 None:intergenic 50.0%
CGAATGGCTCAACAACAGCA+TGG + chr8_4:12390906-12390925 None:intergenic 50.0%
GCTGCCATTAAGTCATGGGT+TGG - chr8_4:12391546-12391565 Msa1314020:intron 50.0%
TCTGCTTTACCCTTCTAGCG+AGG - chr8_4:12392145-12392164 Msa1314020:CDS 50.0%
CTTTACCCTTCTAGCGAGGA+AGG - chr8_4:12392149-12392168 Msa1314020:CDS 50.0%
GTCAATCCTTCCTCGCTAGA+AGG + chr8_4:12392158-12392177 None:intergenic 50.0%
!! GAGGAAGGATTGACTTGCAG+AGG - chr8_4:12392164-12392183 Msa1314020:CDS 50.0%
ACTGCAGCTCAAAGCCCTAC+TGG - chr8_4:12387422-12387441 Msa1314020:exon 55.0%
!! GGTGGTGCCATAGGTGCTAT+TGG - chr8_4:12387452-12387471 Msa1314020:CDS 55.0%
GTGGAGAAGTAGGGTCTCCA+GGG - chr8_4:12387639-12387658 Msa1314020:CDS 55.0%
AGGGACCAAACCCCATTGTG+TGG + chr8_4:12388504-12388523 None:intergenic 55.0%
! ACACAATGGGGTTTGGTCCC+TGG - chr8_4:12388503-12388522 Msa1314020:CDS 55.0%
GAGCCGGTGTTTCACTTGGA+AGG + chr8_4:12389259-12389278 None:intergenic 55.0%
! GAACAGGAGAGCGCAAGGAA+TGG - chr8_4:12389327-12389346 Msa1314020:CDS 55.0%
GCGATTTCCCTTACCCTCGA+AGG - chr8_4:12389438-12389457 Msa1314020:intron 55.0%
GTTCTTCCCCTTCGAGGGTA+AGG + chr8_4:12389449-12389468 None:intergenic 55.0%
TACCCTCGAAGGGGAAGAAC+CGG - chr8_4:12389449-12389468 Msa1314020:intron 55.0%
AGATGTGCGCTCTCTCTACG+AGG - chr8_4:12389807-12389826 Msa1314020:CDS 55.0%
GATGTGCGCTCTCTCTACGA+GGG - chr8_4:12389808-12389827 Msa1314020:CDS 55.0%
CTTGGAGCCAAACATGGGTG+GGG - chr8_4:12390328-12390347 Msa1314020:CDS 55.0%
ACAGTGACCCCACCCATGTT+TGG + chr8_4:12390338-12390357 None:intergenic 55.0%
ATCAGAAGGCGGAGACCAGT+AGG + chr8_4:12391486-12391505 None:intergenic 55.0%
TGGTCTCCGCCTTCTGATAG+AGG - chr8_4:12391488-12391507 Msa1314020:intron 55.0%
CGTGGAGAAGTAGGGTCTCC+AGG - chr8_4:12387638-12387657 Msa1314020:CDS 60.0%
! GGATGGAACAGGAGAGCGCA+AGG - chr8_4:12389322-12389341 Msa1314020:CDS 60.0%
!! TGCCGGTTCTTCCCCTTCGA+GGG + chr8_4:12389454-12389473 None:intergenic 60.0%
GGGTGGGGTCACTGTAGAAC+AGG - chr8_4:12390343-12390362 Msa1314020:CDS 60.0%
GAGGATCCAGCCTCTCCTAC+TGG - chr8_4:12391468-12391487 Msa1314020:intron 60.0%
AAGGCGGAGACCAGTAGGAG+AGG + chr8_4:12391481-12391500 None:intergenic 60.0%
!! CTGCCGGTTCTTCCCCTTCG+AGG + chr8_4:12389455-12389474 None:intergenic 65.0%
GTGCGCTCTCTCTACGAGGG+TGG - chr8_4:12389811-12389830 Msa1314020:CDS 65.0%
CGGAGACCAGTAGGAGAGGC+TGG + chr8_4:12391477-12391496 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 12387173 12392461 12387173 ID=Msa1314020;Name=Msa1314020
chr8_4 mRNA 12387173 12392461 12387173 ID=Msa1314020-mRNA-1;Parent=Msa1314020;Name=Msa1314020-mRNA-1;_AED=0.06;_eAED=0.06;_QI=153|1|1|1|0.88|0.8|10|229|868
chr8_4 exon 12387173 12387193 12387173 ID=Msa1314020-mRNA-1:exon:4635;Parent=Msa1314020-mRNA-1
chr8_4 exon 12387215 12388179 12387215 ID=Msa1314020-mRNA-1:exon:4634;Parent=Msa1314020-mRNA-1
chr8_4 exon 12388477 12388740 12388477 ID=Msa1314020-mRNA-1:exon:4633;Parent=Msa1314020-mRNA-1
chr8_4 exon 12388826 12389130 12388826 ID=Msa1314020-mRNA-1:exon:4632;Parent=Msa1314020-mRNA-1
chr8_4 exon 12389270 12389377 12389270 ID=Msa1314020-mRNA-1:exon:4631;Parent=Msa1314020-mRNA-1
chr8_4 exon 12389497 12389582 12389497 ID=Msa1314020-mRNA-1:exon:4630;Parent=Msa1314020-mRNA-1
chr8_4 exon 12389685 12390005 12389685 ID=Msa1314020-mRNA-1:exon:4629;Parent=Msa1314020-mRNA-1
chr8_4 exon 12390143 12390383 12390143 ID=Msa1314020-mRNA-1:exon:4628;Parent=Msa1314020-mRNA-1
chr8_4 exon 12390606 12390892 12390606 ID=Msa1314020-mRNA-1:exon:4627;Parent=Msa1314020-mRNA-1
chr8_4 exon 12392071 12392461 12392071 ID=Msa1314020-mRNA-1:exon:4626;Parent=Msa1314020-mRNA-1
chr8_4 five_prime_UTR 12392309 12392461 12392309 ID=Msa1314020-mRNA-1:five_prime_utr;Parent=Msa1314020-mRNA-1
chr8_4 CDS 12392071 12392308 12392071 ID=Msa1314020-mRNA-1:cds;Parent=Msa1314020-mRNA-1
chr8_4 CDS 12390606 12390892 12390606 ID=Msa1314020-mRNA-1:cds;Parent=Msa1314020-mRNA-1
chr8_4 CDS 12390143 12390383 12390143 ID=Msa1314020-mRNA-1:cds;Parent=Msa1314020-mRNA-1
chr8_4 CDS 12389685 12390005 12389685 ID=Msa1314020-mRNA-1:cds;Parent=Msa1314020-mRNA-1
chr8_4 CDS 12389497 12389582 12389497 ID=Msa1314020-mRNA-1:cds;Parent=Msa1314020-mRNA-1
chr8_4 CDS 12389270 12389377 12389270 ID=Msa1314020-mRNA-1:cds;Parent=Msa1314020-mRNA-1
chr8_4 CDS 12388826 12389130 12388826 ID=Msa1314020-mRNA-1:cds;Parent=Msa1314020-mRNA-1
chr8_4 CDS 12388477 12388740 12388477 ID=Msa1314020-mRNA-1:cds;Parent=Msa1314020-mRNA-1
chr8_4 CDS 12387423 12388179 12387423 ID=Msa1314020-mRNA-1:cds;Parent=Msa1314020-mRNA-1
chr8_4 three_prime_UTR 12387215 12387422 12387215 ID=Msa1314020-mRNA-1:three_prime_utr;Parent=Msa1314020-mRNA-1
chr8_4 three_prime_UTR 12387173 12387193 12387173 ID=Msa1314020-mRNA-1:three_prime_utr;Parent=Msa1314020-mRNA-1
Gene Sequence

>Msa1314020

ATGACTTCATTGGTGAAAGGTCTCTTTGATAAGCACGAAAAGGTGAAGGGAACTGTGGTGTTGATGCAAAAGAATGTGTTAGACATCAACGCACTCACTGCAGCTCAAAGCCCTACTGGTATCATTGGTGGTGCCATAGGTGCTATTGGTGATGTTGCTGGCAATATACTTGACACTGCCACTTCCTTCTTAGGCCGTTCTATAGCTCTCAAGTTGATTAGTGCTACAAGTGCTGATGGAACTGGAAAAGGAAAAGTTGGACAGGAAACATTTCTGAAAGGTATTCTTACCTCCATACCAACATTGGGAGACAAACAAAATGCTTTCAGCATTAATTTTGAATGGGACAGTGACATGGGAATTCCTGGAGCTTTTTACATCAAGAATTATATGCAAGGTGAATTCTTCCTTGTGAGTTTGACACTTGAAGATATTCCAAACCATGGATCCATCCACTTTGTTTGCAACTCATGGATTTACAATTCTAAAAAGTACAAAACCGACCGCATCTTCTTTGCCAACAAGACATACCTTCCAAGTGAAACACCGGCTCCATTAGTGTACTATAGACAAGAAGAGTTGAAGACTTTAAGAGGGGATGGAACAGGAGAGCGCAAGGAATGGGAAAGAATATATGATTATGATGTCTACAATGATTTGGGTGAGCCTGACTCGAAACCTCAATTGGCTCGTCAAATTCTTGGGGGATCGAGCGATTTCCCTTACCCTCGAAGGGGAAGAACCGGCAGAAGAAAAACTAAAACAGATCCTAACAGTGAGACTCGAAGTCCCACTGTTTACCTTCCAAGAGATGAATCATTTGGACACACAAAGTCATCAGACTTTCTTGTTTACATACTCAAATCAGCATCTCAGAATGTCATACCTCAATTGAGATCTGTAGTTACGTTACAACTCAATAACCCCGAGTTTAACACCTTTCAAGATGTGCGCTCTCTCTACGAGGGTGGAATTAAGCTTCCTACTGATGTACTAAGCCAGATTAGTCCAATACCATTGTTCAAGGAACTTTTCCGATCTGACGGTGAACAAGCACTTAAGTTTCCACCACCAAAAGTGATTCAAGTGGACCATTCTGCATGGCAGACTGATGAGGAATTTGCAAGGGAGATGATTGCTGGGGTGAATCCACACATCATCAAAAAACTCTCGGAGTTTCCACCAAAGAGCAAGCTAGATAGCCAAAAATTTGGTGATAACACCAGCACCATAACTAAAGAAAACTTGGAGCCAAACATGGGTGGGGTCACTGTAGAACAGGCTATCCAAAACAATAGATTGTACATACTTGATCACCACGACCCGCTCTTTCCATATTTGAGGAAAATAAATGCAAGTGAGACAAAGGCCTATGCTACTAGAACCATTCTTTTCTTGCAAGATAATGGAACTTTGAAGCCACTGGCCATTGAACTAAGCAGGCCACACCCTCAAGGTGATAGTTTTGGTCCTGTTAGCAATGTTTACTTGCCCGCAAGTGAAGGTGTTGAAGCATCAGTTTGGCTCCTTGCCAAGGCTTTTGTTGTTGTAAATGACTCCTGCTATCACCAACTTGTCAGCCATTGGTTGAATACCCATGCTGTTGTTGAGCCATTCGTCATAGCAACAAATAGGCATCTTAGTGTGGTTCACCCTATTCATAAACTCTTGCTTCCACATTATCGTGACACAATGAACATAAATGCACTTGCACGAAATGTCTTGGTCAATGCAGAGGGTATTATTGAATCAACTTTCTTGTGGGGAAATTATGCTTTGGAAATGTCTGCTGTTGTTTACAAGGATTGGAATTTCATTGAGCAAGGACTGCCTAATGATCTAATCAAAAGAGGAGTAGCTGTTGAGGATCCAGCCTCTCCTACTGGTCTCCGCCTTCTGATAGAGGATTATCCTTATGCTTCTGATGGACTAGAAATATGGGCTGCCATTAAGTCATGGGTTGGTGAATATGTGAATTTCTATTACAAGTCTGATGCAGCTATTGCACAAGATTCTGAACTCCAAGCATTCTGGAAAGAACTTGTAGAGGTTGGTCATGGTGACTTAAAGAATGCCACATGGTGGTTTAAGATGCAAACTCGTGAGGAGTTGATCGAAGCTTCCACCATCCTTATATGGATTGCTTCAGCACTTCATGCAGCTGTTAACTTTGGACAATATCCGTATGGAGGATATATCCTTAACCGACCAACAAAAAGTAGAAGATTCATGCCTGAGAAAGGATCACCTGAGTATGATGAGCTTGCTAAGGACTACCAGAAGACCTATTTGAGGACAATCACACCAAAGAATGATACTCTTACTGACTTGACCATTATAGAGGTCTTGTCAAGGCATGCTTCTGATGAGCAATACCTTGGAGATAGAATTGAAGGTGACAATTGGACTTCTGATACACAGCCAAAAGAAGCCTTCAAGAGGTTTGGAAAGAAGTTGGCTGAAATTGAGCAAAAACTCACTCAAAGGAACAATGATGAGACATTGAGGAATCGGTATGGACCTGTGAAGATGCCATACACTCTGCTTTACCCTTCTAGCGAGGAAGGATTGACTTGCAGAGGCATTCCCAACAGTATCTCCATCTAA
Protein sequence

>Msa1314020

MTSLVKGLFDKHEKVKGTVVLMQKNVLDINALTAAQSPTGIIGGAIGAIGDVAGNILDTATSFLGRSIALKLISATSADGTGKGKVGQETFLKGILTSIPTLGDKQNAFSINFEWDSDMGIPGAFYIKNYMQGEFFLVSLTLEDIPNHGSIHFVCNSWIYNSKKYKTDRIFFANKTYLPSETPAPLVYYRQEELKTLRGDGTGERKEWERIYDYDVYNDLGEPDSKPQLARQILGGSSDFPYPRRGRTGRRKTKTDPNSETRSPTVYLPRDESFGHTKSSDFLVYILKSASQNVIPQLRSVVTLQLNNPEFNTFQDVRSLYEGGIKLPTDVLSQISPIPLFKELFRSDGEQALKFPPPKVIQVDHSAWQTDEEFAREMIAGVNPHIIKKLSEFPPKSKLDSQKFGDNTSTITKENLEPNMGGVTVEQAIQNNRLYILDHHDPLFPYLRKINASETKAYATRTILFLQDNGTLKPLAIELSRPHPQGDSFGPVSNVYLPASEGVEASVWLLAKAFVVVNDSCYHQLVSHWLNTHAVVEPFVIATNRHLSVVHPIHKLLLPHYRDTMNINALARNVLVNAEGIIESTFLWGNYALEMSAVVYKDWNFIEQGLPNDLIKRGVAVEDPASPTGLRLLIEDYPYASDGLEIWAAIKSWVGEYVNFYYKSDAAIAQDSELQAFWKELVEVGHGDLKNATWWFKMQTREELIEASTILIWIASALHAAVNFGQYPYGGYILNRPTKSRRFMPEKGSPEYDELAKDYQKTYLRTITPKNDTLTDLTIIEVLSRHASDEQYLGDRIEGDNWTSDTQPKEAFKRFGKKLAEIEQKLTQRNNDETLRNRYGPVKMPYTLLYPSSEEGLTCRGIPNSISI*