AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1233620

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1233620 MtrunA17_Chr8g0342951 96.198 868 33 0 1 868 1 868 0.0 1711
Msa1233620 MtrunA17_Chr8g0342971 86.897 870 112 2 1 868 1 870 0.0 1589
Msa1233620 MtrunA17_Chr8g0344211 84.677 868 133 0 1 868 1 868 0.0 1531
Msa1233620 MtrunA17_Chr8g0343011 82.644 870 144 2 1 868 1 865 0.0 1500
Msa1233620 MtrunA17_Chr8g0342891 80.116 860 167 1 9 868 6 861 0.0 1465
Msa1233620 MtrunA17_Chr8g0342921 77.816 870 190 3 1 868 1 869 0.0 1426
Msa1233620 MtrunA17_Chr8g0342931 83.333 750 125 0 119 868 1 750 0.0 1326
Msa1233620 MtrunA17_Chr8g0342901 73.812 863 183 7 9 868 6 828 0.0 1308
Msa1233620 MtrunA17_Chr2g0329911 71.001 869 243 3 1 868 1 861 0.0 1290
Msa1233620 MtrunA17_Chr8g0342881 71.062 857 241 2 12 868 7 856 0.0 1274
Msa1233620 MtrunA17_Chr2g0329901 66.667 864 283 3 5 868 5 863 0.0 1202
Msa1233620 MtrunA17_Chr5g0406871 65.207 868 293 7 7 868 3 867 0.0 1187
Msa1233620 MtrunA17_Chr8g0343021 65.207 868 290 7 7 868 3 864 0.0 1186
Msa1233620 MtrunA17_Chr8g0343031 64.212 869 295 6 8 868 5 865 0.0 1165
Msa1233620 MtrunA17_Chr3g0120071 64.079 863 300 5 8 868 4 858 0.0 1160
Msa1233620 MtrunA17_Chr8g0343001 64.685 858 241 8 14 868 9 807 0.0 1123
Msa1233620 MtrunA17_Chr8g0342991 64.959 859 237 10 14 868 9 807 0.0 1117
Msa1233620 MtrunA17_Chr8g0342981 64.477 822 247 10 62 868 32 823 0.0 1059
Msa1233620 MtrunA17_Chr1g0191921 57.688 865 332 7 14 868 18 858 0.0 1009
Msa1233620 MtrunA17_Chr7g0272791 56.401 867 342 9 15 868 24 867 0.0 1002
Msa1233620 MtrunA17_Chr1g0205611 55.798 871 345 9 15 868 9 856 0.0 999
Msa1233620 MtrunA17_Chr8g0344241 87.089 395 51 0 474 868 67 461 0.0 731
Msa1233620 MtrunA17_Chr8g0344241 81.667 60 11 0 294 353 9 68 2.05e-23 104
Msa1233620 MtrunA17_Chr8g0344201 46.041 821 426 11 57 867 113 926 0.0 723
Msa1233620 MtrunA17_Chr3g0118651 43.130 837 433 15 53 868 89 903 0.0 657
Msa1233620 MtrunA17_Chr8g0338451 42.770 823 426 12 56 851 46 850 0.0 652
Msa1233620 MtrunA17_Chr8g0377101 42.399 842 445 17 50 868 92 916 0.0 640
Msa1233620 MtrunA17_Chr3g0118641 42.410 830 449 16 53 868 88 902 0.0 636
Msa1233620 MtrunA17_Chr4g0033171 46.121 709 368 10 168 868 23 725 0.0 618
Msa1233620 MtrunA17_Chr4g0047281 40.567 811 442 11 67 867 114 894 0.0 600
Msa1233620 MtrunA17_Chr3g0118621 44.198 767 410 12 113 868 106 865 0.0 595
Msa1233620 MtrunA17_Chr6g0471951 41.061 509 254 6 322 826 11 477 3.79e-130 399
Msa1233620 MtrunA17_Chr7g0218231 61.538 117 44 1 522 637 16 132 5.54e-43 152
Msa1233620 MtrunA17_Chr6g0468081 56.180 89 38 1 550 637 1 89 1.07e-26 104
Msa1233620 MtrunA17_Chr4g0047271 39.560 91 55 0 777 867 1 91 2.21e-16 75.1
Msa1233620 MtrunA17_Chr3g0137991 35.200 125 65 3 744 868 1 109 7.96e-15 71.2
Msa1233620 MtrunA17_Chr7g0272781 42.857 63 35 1 760 822 8 69 8.31e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1233620 AT1G55020.1 56.157 869 340 11 13 868 19 859 0.0 993
Msa1233620 AT3G22400.1 54.566 876 354 10 14 868 34 886 0.0 988
Msa1233620 AT1G72520.1 44.336 821 440 10 57 868 114 926 0.0 705
Msa1233620 AT1G17420.1 43.056 864 454 12 14 868 85 919 0.0 695
Msa1233620 AT3G45140.1 42.771 830 429 19 57 868 95 896 0.0 636
Msa1233620 AT3G45140.2 44.473 769 391 17 118 868 4 754 0.0 624
Msa1233620 AT1G67560.1 41.312 823 449 15 64 868 111 917 0.0 605

Find 240 sgRNAs with CRISPR-Local

Find 414 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTGATGGACTAGAAATA+TGG 0.237016 8_2:-10439278 Msa1233620:CDS
TGACACTGCCACTTCCTTCT+TGG 0.237628 8_2:-10443481 Msa1233620:CDS
TTCACCAACCCATGACTTAA+TGG 0.254314 8_2:+10439251 None:intergenic
AACCTCTTGAAGGCTTCTTT+TGG 0.268560 8_2:+10438775 None:intergenic
AAGCTTCCACCATCCTTATA+TGG 0.290240 8_2:-10439080 Msa1233620:CDS
CAATTGGCTCGTCAAATTCT+TGG 0.291064 8_2:-10441394 Msa1233620:CDS
GTATGTACAATCTATTGTTT+TGG 0.298876 8_2:+10440292 None:intergenic
ATTCTGAACTCCAAGCATTC+TGG 0.306722 8_2:-10439185 Msa1233620:CDS
GCTTAAATGTATAATATCTT+AGG 0.309024 8_2:+10443681 None:intergenic
TATATACCTTGAATCACTTT+TGG 0.314352 8_2:+10440867 None:intergenic
TTCCTGAAATAAAATCATTA+AGG 0.315697 8_2:+10438396 None:intergenic
TGGCTATCTAGCTTGCTCTT+TGG 0.332936 8_2:+10440535 None:intergenic
AATTGGCTCGTCAAATTCTT+GGG 0.333617 8_2:-10441393 Msa1233620:CDS
GACACTGCCACTTCCTTCTT+GGG 0.334020 8_2:-10443480 Msa1233620:CDS
GTCAATCCTTCCTCGCTAGA+AGG 0.335173 8_2:+10438646 None:intergenic
AACAGTATCTCCATCTAAAA+TGG 0.337794 8_2:-10438607 Msa1233620:exon
CTTCCAAGAGATGAATCATT+TGG 0.339142 8_2:-10441137 Msa1233620:CDS
TCAGTAAGAGTATCATTCTT+TGG 0.350791 8_2:+10438892 None:intergenic
TATCTCATATGGTTCAAATA+TGG 0.357066 8_2:-10438368 Msa1233620:intron
GCTTCAACACCTTCACTTGC+GGG 0.358408 8_2:+10440087 None:intergenic
CTTCTTTCCAAACCTCTTGA+AGG 0.358888 8_2:+10438765 None:intergenic
GAAGAGTTGAAGACTTTAAG+AGG 0.362440 8_2:-10441502 Msa1233620:CDS
GACAGTGACATGGGAATTCC+TGG 0.363962 8_2:-10441952 Msa1233620:CDS
ACAGTGACCCCACCCATGTT+TGG 0.364385 8_2:+10440466 None:intergenic
AAAGAAGCCTTCAAGAGGTT+TGG 0.368065 8_2:-10438772 Msa1233620:CDS
CACCCTCAAGGTGATAGTTT+TGG 0.371667 8_2:-10440132 Msa1233620:CDS
GCCAATTGAGGTTTCGAGTC+AGG 0.371804 8_2:+10441409 None:intergenic
TTGTCCTCAAATAGGTCTTC+TGG 0.375950 8_2:+10438920 None:intergenic
ACCCGCTCTTTCCATATTTG+AGG 0.383986 8_2:-10440257 Msa1233620:CDS
CTATCTAGCTTGCTCTTTGG+TGG 0.385775 8_2:+10440538 None:intergenic
TTATGATGTCTACAATGATT+TGG 0.388585 8_2:-10441437 Msa1233620:CDS
GTTCTTCCCCTTCGAGGGTA+AGG 0.388654 8_2:+10441355 None:intergenic
TCCACTTTGTTTGCAACTCA+TGG 0.389443 8_2:-10441846 Msa1233620:CDS
GGGTGGGGTCACTGTGGAAC+AGG 0.389444 8_2:-10440458 Msa1233620:intron
TGGTGTGATTGTCCTCAAAT+AGG 0.391613 8_2:+10438912 None:intergenic
GTGCTGAAGCAATCCATATA+AGG 0.392721 8_2:+10439067 None:intergenic
CATTCGTCATAGCAACAAAT+AGG 0.394550 8_2:-10439881 Msa1233620:CDS
CAAGTTCTTTCCAGAATGCT+TGG 0.398414 8_2:+10439175 None:intergenic
CTGCTGTTGTTTACAAGGAT+TGG 0.398565 8_2:-10439707 Msa1233620:CDS
AGTTCCTTGAACAATGGTAT+TGG 0.400202 8_2:+10440930 None:intergenic
AGCATTAAAGATGACTTCAT+TGG 0.402361 8_2:-10443661 Msa1233620:exon
CACCATAACTAAAGAAAACT+TGG 0.414273 8_2:-10440491 Msa1233620:CDS
TATGATGTCTACAATGATTT+GGG 0.419822 8_2:-10441436 Msa1233620:CDS
CTTCATGCAGCTGTTAACTT+TGG 0.424839 8_2:-10439045 Msa1233620:CDS
CTTGTGGGGAAATTATGCTT+TGG 0.426043 8_2:-10439736 Msa1233620:CDS
TTATAGTAGTTGATGAGATT+AGG 0.428042 8_2:+10443753 None:intergenic
CTGCCGGTTCTTCCCCTTCG+AGG 0.429096 8_2:+10441349 None:intergenic
CAAGAGGTTTGGAAAGAAGT+TGG 0.434558 8_2:-10438761 Msa1233620:CDS
TATTGAATCAACTTTCTTGT+GGG 0.435079 8_2:-10439751 Msa1233620:CDS
TTTGCAAGGGAGATGATTGC+TGG 0.437702 8_2:-10440717 Msa1233620:CDS
TCTTGTCTATAGTACACTAA+TGG 0.438231 8_2:+10441523 None:intergenic
GGAAGCAAGAGTTTATGAAT+AGG 0.438914 8_2:+10439840 None:intergenic
CCTTGACAAGACCTCTATAA+TGG 0.440236 8_2:+10438864 None:intergenic
ATAGAATTGAAGGTGACAAT+TGG 0.444518 8_2:-10438813 Msa1233620:CDS
GGTGCTATTGGTGATGTTGC+TGG 0.444661 8_2:-10443513 Msa1233620:CDS
TACCCTCGAAGGGGAAGAAC+CGG 0.444987 8_2:-10441352 Msa1233620:CDS
GGCAAGTAAACATTGCTAAC+AGG 0.445982 8_2:+10440108 None:intergenic
AAGGCTGCATTTGATACAAC+AGG 0.447930 8_2:+10438415 None:intergenic
TGTCCAAATGATTCATCTCT+TGG 0.449045 8_2:+10441134 None:intergenic
CCACCACCAAAAGTGATTCA+AGG 0.452144 8_2:-10440873 Msa1233620:intron
ACAATGGTATTGGACTAATC+TGG 0.453552 8_2:+10440940 None:intergenic
CGGAGACCAGTAGGAGAGGC+TGG 0.454121 8_2:+10439327 None:intergenic
ATTATCTTGCAAGAAAAGAA+TGG 0.455567 8_2:+10440194 None:intergenic
GGACTTCGAGTCTCACTGTT+AGG 0.459026 8_2:+10441170 None:intergenic
GAGGATCCAGCCTCTCCTAC+TGG 0.459624 8_2:-10439333 Msa1233620:CDS
TGCACTTGCACGAAACGTAT+TGG 0.461510 8_2:-10439790 Msa1233620:CDS
GAAGCAAGAGTTTATGAATA+GGG 0.463724 8_2:+10439841 None:intergenic
GCCTGACTCGAAACCTCAAT+TGG 0.465501 8_2:-10441410 Msa1233620:CDS
TAGTCCAATACCATTGTTCA+AGG 0.470489 8_2:-10440934 Msa1233620:CDS
GGAACTGGAAAAGGAAAAGT+TGG 0.470758 8_2:-10442060 Msa1233620:CDS
CAAAGCCCTACTGGTATCAT+TGG 0.470844 8_2:-10443546 Msa1233620:CDS
GAAGGGTAAAGCAGAGTGTA+TGG 0.472663 8_2:+10438664 None:intergenic
AAGTGGATGGATCCATGGTT+TGG 0.473548 8_2:+10441862 None:intergenic
ACTTTAAGAGGGGATGGAAC+AGG 0.476377 8_2:-10441490 Msa1233620:CDS
TAATGGAACTTTGAAGCCAT+TGG 0.477750 8_2:-10440175 Msa1233620:CDS
GGTGGTGCCATAGGTGCTAT+TGG 0.479135 8_2:-10443525 Msa1233620:CDS
TTTGTCTCCCAATGTTGGTA+TGG 0.481893 8_2:+10442005 None:intergenic
TACTCAGGTGATCCTTTCTC+AGG 0.482761 8_2:+10438964 None:intergenic
AACAGGAGAGCGCAAGGAAT+GGG 0.484527 8_2:-10441473 Msa1233620:CDS
ATGATGAGACATTGAGGAAT+CGG 0.490739 8_2:-10438705 Msa1233620:CDS
TGCTTCAACACCTTCACTTG+CGG 0.491444 8_2:+10440086 None:intergenic
CTTTACCCTTCTAGCGAGGA+AGG 0.492306 8_2:-10438652 Msa1233620:CDS
TACCTTGGAGATAGAATTGA+AGG 0.492386 8_2:-10438823 Msa1233620:CDS
CATACCAATGGCTGACAAGT+TGG 0.492461 8_2:+10440010 None:intergenic
TGCCTAATGATCTAATCAAA+AGG 0.492577 8_2:-10439665 Msa1233620:intron
CTGCTTAGTTCAATGGCCAA+TGG 0.493602 8_2:+10440159 None:intergenic
GTGTGGCCTGCTTAGTTCAA+TGG 0.497006 8_2:+10440152 None:intergenic
AATGGAGCCGGTGTTTCACT+TGG 0.497543 8_2:+10441541 None:intergenic
ATCAGTTTGGCTCCTTGCCA+AGG 0.497881 8_2:-10440064 Msa1233620:CDS
CTTACCTCCATACCAACATT+GGG 0.499072 8_2:-10442012 Msa1233620:CDS
AAGAGTTGAAGACTTTAAGA+GGG 0.499352 8_2:-10441501 Msa1233620:CDS
GCTGACAAGTTGGTGATAGC+AGG 0.499609 8_2:+10440020 None:intergenic
ACTGCAGCTCAAAGCCCTAC+TGG 0.500476 8_2:-10443555 Msa1233620:CDS
GATTATCCTTATGCTTCTGA+TGG 0.500902 8_2:-10439291 Msa1233620:CDS
AACATCACCAATAGCACCTA+TGG 0.501370 8_2:+10443518 None:intergenic
TGGTCTCCGCCTTCTGATAG+AGG 0.502669 8_2:-10439313 Msa1233620:CDS
TGCCGGTTCTTCCCCTTCGA+GGG 0.503677 8_2:+10441350 None:intergenic
AATGTCTGCTGTTGTTTACA+AGG 0.504818 8_2:-10439712 Msa1233620:CDS
TTCTGATGGACTAGAAATAT+GGG 0.506179 8_2:-10439277 Msa1233620:CDS
AAGGTGTTGAAGCATCAGTT+TGG 0.507198 8_2:-10440077 Msa1233620:CDS
AGAATTTGACGAGCCAATTG+AGG 0.508375 8_2:+10441397 None:intergenic
TTATTGAATCAACTTTCTTG+TGG 0.508477 8_2:-10439752 Msa1233620:CDS
TCTTGAAAGGTGTTAAACTC+GGG 0.511572 8_2:+10441014 None:intergenic
TGGAAAGAACTTGTAGAGGT+TGG 0.513323 8_2:-10439165 Msa1233620:CDS
TTGAAGACTTTAAGAGGGGA+TGG 0.514199 8_2:-10441496 Msa1233620:CDS
TCTTACCTCCATACCAACAT+TGG 0.515526 8_2:-10442013 Msa1233620:CDS
GGTATCATTGGTGGTGCCAT+AGG 0.517163 8_2:-10443534 Msa1233620:CDS
TACTGACTTGACCATTATAG+AGG 0.518055 8_2:-10438875 Msa1233620:CDS
GACCAAAACTATCACCTTGA+GGG 0.520938 8_2:+10440130 None:intergenic
TGGAAAAGGAAAAGTTGGAC+AGG 0.521456 8_2:-10442055 Msa1233620:CDS
GAACAGGAGAGCGCAAGGAA+TGG 0.522042 8_2:-10441474 Msa1233620:CDS
CATTGGCCATTGAACTAAGC+AGG 0.522845 8_2:-10440158 Msa1233620:CDS
TCTAGTCCATCAGAAGCATA+AGG 0.525524 8_2:+10439285 None:intergenic
AGAAGATTCATGCCTGAGAA+AGG 0.525970 8_2:-10438976 Msa1233620:CDS
TTCTTCCCCTTCGAGGGTAA+GGG 0.526455 8_2:+10441356 None:intergenic
AGAAAACTTGGAGCCAAACA+TGG 0.527594 8_2:-10440479 Msa1233620:CDS
ATCACCAACTTGTCAGCCAT+TGG 0.528699 8_2:-10440014 Msa1233620:intron
AGAGTGTATGGCATCTTCAC+AGG 0.532936 8_2:+10438676 None:intergenic
GATTGGAATTTCATTGAGCA+AGG 0.533125 8_2:-10439690 Msa1233620:CDS
ACAATGTATTAGTTCAAAAG+AGG 0.533299 8_2:+10443779 None:intergenic
CACCTTCAATTCTATCTCCA+AGG 0.533418 8_2:+10438821 None:intergenic
AGCCCTACTGGTATCATTGG+TGG 0.535542 8_2:-10443543 Msa1233620:CDS
ATCTTGAAAGGTGTTAAACT+CGG 0.539742 8_2:+10441013 None:intergenic
GCTTGTGTCTTGTAACCATA+GGG 0.540521 8_2:+10443718 None:intergenic
TCCTCAAATATGGAAAGAGC+GGG 0.540806 8_2:+10440256 None:intergenic
CGATTTCCCTTACCCTCGAA+GGG 0.541927 8_2:-10441362 Msa1233620:CDS
CGGAAAAGTTCCTTGAACAA+TGG 0.542049 8_2:+10440924 None:intergenic
CTATTTGTTGCTATGACGAA+TGG 0.543162 8_2:+10439882 None:intergenic
AAACTATCACCTTGAGGGTG+TGG 0.543185 8_2:+10440135 None:intergenic
ATTTACAACAACAAAAGCCT+TGG 0.548619 8_2:+10440047 None:intergenic
AAGAATGGTTCTAGTAGCAT+AGG 0.548654 8_2:+10440209 None:intergenic
CCGCATCTTCTTTGCCAACA+AGG 0.548836 8_2:-10441794 Msa1233620:intron
TAAATACGAACCATTCCCTA+TGG 0.550679 8_2:-10443733 Msa1233620:five_prime_UTR
TGTCTTGTAACCATAGGGAA+TGG 0.551576 8_2:+10443723 None:intergenic
TCTCTTTGATAAGCACGAAA+AGG 0.553585 8_2:-10443631 Msa1233620:CDS
AAACAAAGTGGATGGATCCA+TGG 0.554216 8_2:+10441857 None:intergenic
ATTGGCTCGTCAAATTCTTG+GGG 0.554768 8_2:-10441392 Msa1233620:CDS
GCTTCTGATGAGCAATACCT+TGG 0.555714 8_2:-10438838 Msa1233620:CDS
ATCAGAAGGCGGAGACCAGT+AGG 0.558642 8_2:+10439318 None:intergenic
AACTTTGGACAATATCCGTA+TGG 0.559068 8_2:-10439030 Msa1233620:CDS
GGATGGAACAGGAGAGCGCA+AGG 0.559613 8_2:-10441479 Msa1233620:CDS
TACATCAAGAATTATATGCA+AGG 0.560399 8_2:-10441922 Msa1233620:CDS
ATTGAATCAACTTTCTTGTG+GGG 0.560869 8_2:-10439750 Msa1233620:CDS
TATGGGCTGCCATTAAGTCA+TGG 0.562237 8_2:-10439260 Msa1233620:CDS
CATCAGTCTGCCATGCAGAA+TGG 0.563367 8_2:+10440745 None:intergenic
TCAATCCTTCCTCGCTAGAA+GGG 0.568116 8_2:+10438647 None:intergenic
CAAATGATTCATCTCTTGGA+AGG 0.568278 8_2:+10441138 None:intergenic
AGAACGGCCCAAGAAGGAAG+TGG 0.568800 8_2:+10443473 None:intergenic
AGCTATAGAACGGCCCAAGA+AGG 0.568836 8_2:+10443467 None:intergenic
ACTTGGAGCCAAACATGGGT+GGG 0.569230 8_2:-10440474 Msa1233620:CDS
CTATAGTACACTAATGGAGC+CGG 0.569261 8_2:+10441529 None:intergenic
ATGGGCTGCCATTAAGTCAT+GGG 0.569354 8_2:-10439259 Msa1233620:CDS
TGAGTTGCAAACAAAGTGGA+TGG 0.569767 8_2:+10441849 None:intergenic
GCGATTTCCCTTACCCTCGA+AGG 0.569933 8_2:-10441363 Msa1233620:CDS
GTCTCCCAATGTTGGTATGG+AGG 0.572486 8_2:+10442008 None:intergenic
AGAGTTGAAGACTTTAAGAG+GGG 0.573240 8_2:-10441500 Msa1233620:CDS
TGCTTGTGTCTTGTAACCAT+AGG 0.574107 8_2:+10443717 None:intergenic
GAGACATTGAGGAATCGGTA+TGG 0.574624 8_2:-10438700 Msa1233620:CDS
ATTTAGAGGAGTAGCTGTTG+AGG 0.574648 8_2:-10439352 Msa1233620:intron
GAGAGAGCGCACATCTTGAA+AGG 0.575061 8_2:+10441001 None:intergenic
ATCTCCATCTAAAATGGTCA+TGG 0.575487 8_2:-10438601 Msa1233620:exon
AACTTGGAGCCAAACATGGG+TGG 0.576306 8_2:-10440475 Msa1233620:CDS
TTGCAAGGGAGATGATTGCT+GGG 0.576355 8_2:-10440716 Msa1233620:CDS
GTTTACTTGCCCGCAAGTGA+AGG 0.576493 8_2:-10440096 Msa1233620:CDS
AAGATGACTTCATTGGTGAA+AGG 0.578712 8_2:-10443654 Msa1233620:CDS
AATAAATGCAAGTGAGACAA+AGG 0.579607 8_2:-10440232 Msa1233620:CDS
TCCATGAGTTGCAAACAAAG+TGG 0.581030 8_2:+10441845 None:intergenic
TGATAAGCACGAAAAGGTGA+AGG 0.581687 8_2:-10443625 Msa1233620:CDS
TTCCTCAAATATGGAAAGAG+CGG 0.581997 8_2:+10440255 None:intergenic
AGCCAAAAGAAGCCTTCAAG+AGG 0.582036 8_2:-10438777 Msa1233620:CDS
TGATCGTAGGTAAGAAGTGA+GGG 0.582443 8_2:+10438534 None:intergenic
GAGCCGGTGTTTCACTTGGA+AGG 0.583942 8_2:+10441545 None:intergenic
CTTGGAGCCAAACATGGGTG+GGG 0.584070 8_2:-10440473 Msa1233620:CDS
ATTGGAATTTCATTGAGCAA+GGG 0.586858 8_2:-10439689 Msa1233620:CDS
GGAACAATGATGAGACATTG+AGG 0.591650 8_2:-10438711 Msa1233620:CDS
TGCTTTGAATAACAGTGAGA+AGG 0.591999 8_2:-10438566 Msa1233620:three_prime_UTR
ATATATAATAACATGATCGT+AGG 0.592458 8_2:+10438521 None:intergenic
GTAACTACAGATCTCAATTG+AGG 0.593972 8_2:+10441053 None:intergenic
TGAGTATGATGAGCTTGCTA+AGG 0.595579 8_2:-10438947 Msa1233620:CDS
GCACCACCAATGATACCAGT+AGG 0.595832 8_2:+10443540 None:intergenic
CTTCAAGTGTCAAACTCACA+AGG 0.596098 8_2:+10441890 None:intergenic
GGACAGGAAACATTTCTGAA+AGG 0.599176 8_2:-10442039 Msa1233620:CDS
CAACAACAAAAGCCTTGGCA+AGG 0.602926 8_2:+10440052 None:intergenic
AAGGATAATCCTCTATCAGA+AGG 0.603529 8_2:+10439304 None:intergenic
TTTGAATGGGACAGTGACAT+GGG 0.604319 8_2:-10441961 Msa1233620:CDS
TTCATTGTGTCACGATAATG+TGG 0.604329 8_2:+10439819 None:intergenic
CTAAGCAGGCCACACCCTCA+AGG 0.605346 8_2:-10440144 Msa1233620:CDS
TTAGCAAGCTCATCATACTC+AGG 0.608098 8_2:+10438949 None:intergenic
TTAAGGATATATCCTCCATA+CGG 0.608467 8_2:+10439015 None:intergenic
CTTGAAGATATTCCAAACCA+TGG 0.608577 8_2:-10441874 Msa1233620:CDS
GTGCTTGTTCACCATCAGAT+CGG 0.610157 8_2:+10440904 None:intergenic
GACTGATGAGGAATTTGCAA+GGG 0.610600 8_2:-10440730 Msa1233620:CDS
CTTGAAAGGTGTTAAACTCG+GGG 0.611801 8_2:+10441015 None:intergenic
ACTACCAGAAGACCTATTTG+AGG 0.611884 8_2:-10438924 Msa1233620:CDS
ATGATCGTAGGTAAGAAGTG+AGG 0.612019 8_2:+10438533 None:intergenic
CGAATGGCTCAACAACAGCA+TGG 0.613252 8_2:+10439898 None:intergenic
AACAAATAGGCATCTTAGTG+TGG 0.616014 8_2:-10439868 Msa1233620:CDS
TTGGCTCGTCAAATTCTTGG+GGG 0.616447 8_2:-10441391 Msa1233620:CDS
ATTCTGGAAAGAACTTGTAG+AGG 0.619472 8_2:-10439169 Msa1233620:CDS
AATATGGAAAGAGCGGGTCG+TGG 0.621020 8_2:+10440262 None:intergenic
AACGTATTGGTCAATGCAGA+GGG 0.623777 8_2:-10439777 Msa1233620:CDS
AGCAATCCATATAAGGATGG+TGG 0.623898 8_2:+10439074 None:intergenic
ATTAGTGCTACAAGTGCTGA+TGG 0.624947 8_2:-10443435 Msa1233620:intron
AGACTGATGAGGAATTTGCA+AGG 0.627020 8_2:-10440731 Msa1233620:CDS
GAACTTGTAGAGGTTGGTCA+TGG 0.628028 8_2:-10439159 Msa1233620:CDS
GATAAGCACGAAAAGGTGAA+GGG 0.628987 8_2:-10443624 Msa1233620:CDS
GAATGGCTCAACAACAGCAT+GGG 0.631116 8_2:+10439899 None:intergenic
AAACGTATTGGTCAATGCAG+AGG 0.631495 8_2:-10439778 Msa1233620:CDS
AAGGCGGAGACCAGTAGGAG+AGG 0.631668 8_2:+10439323 None:intergenic
TTCTGCATGGCAGACTGATG+AGG 0.631772 8_2:-10440742 Msa1233620:CDS
GAGGAAGGATTGACTTGCAG+AGG 0.631778 8_2:-10438637 Msa1233620:CDS
GTGCGCTCTCTCTACGAGGG+TGG 0.634384 8_2:-10440990 Msa1233620:CDS
CCTTGTTGGCAAAGAAGATG+CGG 0.636835 8_2:+10441794 None:intergenic
AACAGGACTATAATGTTACA+AGG 0.637286 8_2:+10438432 None:intergenic
GTTTAAGATGCAAACTCGTG+AGG 0.640174 8_2:-10439112 Msa1233620:CDS
ATCTGGCTTAGTACATCAGT+AGG 0.640323 8_2:+10440957 None:intergenic
CACCACCAATGATACCAGTA+GGG 0.641870 8_2:+10443541 None:intergenic
TGAAGCAATCCATATAAGGA+TGG 0.642489 8_2:+10439071 None:intergenic
TCAACTTGAGAGCTATAGAA+CGG 0.645783 8_2:+10443457 None:intergenic
CCATTATAGAGGTCTTGTCA+AGG 0.646315 8_2:-10438864 Msa1233620:CDS
AGATGTGCGCTCTCTCTACG+AGG 0.646720 8_2:-10440994 Msa1233620:CDS
ATACCTTCCAAGTGAAACAC+CGG 0.647734 8_2:-10441548 Msa1233620:CDS
GAAAACTTGGAGCCAAACAT+GGG 0.647756 8_2:-10440478 Msa1233620:CDS
GGACCAAAACTATCACCTTG+AGG 0.648019 8_2:+10440129 None:intergenic
TCTCTTGGAAGGTAAACAGT+GGG 0.653344 8_2:+10441149 None:intergenic
ATCTCTTGGAAGGTAAACAG+TGG 0.662459 8_2:+10441148 None:intergenic
TTTGGACAATATCCGTATGG+AGG 0.662709 8_2:-10439027 Msa1233620:CDS
GTTGGCAAAGAAGATGCGGT+CGG 0.663469 8_2:+10441798 None:intergenic
GAACAGTGGACCATTCTGCA+TGG 0.669132 8_2:-10440755 Msa1233620:intron
TCTGCTTTACCCTTCTAGCG+AGG 0.672151 8_2:-10438656 Msa1233620:CDS
GATAATCCTCTATCAGAAGG+CGG 0.677768 8_2:+10439307 None:intergenic
CGAAAAGGTGAAGGGAACTG+TGG 0.680100 8_2:-10443616 Msa1233620:CDS
GCTGCCATTAAGTCATGGGT+TGG 0.682139 8_2:-10439255 Msa1233620:CDS
GATGTGCGCTCTCTCTACGA+GGG 0.685367 8_2:-10440993 Msa1233620:CDS
GATTTCCCTTACCCTCGAAG+GGG 0.685881 8_2:-10441361 Msa1233620:CDS
AAACATGGGTGGGGTCACTG+TGG 0.701307 8_2:-10440464 Msa1233620:CDS
ACTTAAAGAATGCCACATGG+TGG 0.703250 8_2:-10439134 Msa1233620:CDS
TTGCATCTTAAACCACCATG+TGG 0.713418 8_2:+10439122 None:intergenic
TGCAAGGGAGATGATTGCTG+GGG 0.719674 8_2:-10440715 Msa1233620:CDS
GTGACTTAAAGAATGCCACA+TGG 0.775897 8_2:-10439137 Msa1233620:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTAATTAACCTAA+TGG - chr8_2:10438783-10438802 Msa1233620:CDS 10.0%
!!! AATTTTAAATTGAAAAAGAT+TGG + chr8_2:10439603-10439622 None:intergenic 10.0%
!!! AAATAATTTCAATATTTTAG+TGG + chr8_2:10439922-10439941 None:intergenic 10.0%
!!! TTTTGTATGAAATATATTAT+TGG + chr8_2:10441347-10441366 None:intergenic 10.0%
!! TGCATAATATAATATATGTA+GGG + chr8_2:10438867-10438886 None:intergenic 15.0%
!! TTGCATAATATAATATATGT+AGG + chr8_2:10438868-10438887 None:intergenic 15.0%
!! ATATATCTACTGTATATTAA+AGG - chr8_2:10438970-10438989 Msa1233620:CDS 15.0%
!!! ATGCTAAATTGAATTTTTTT+AGG - chr8_2:10439121-10439140 Msa1233620:CDS 15.0%
!!! TGCTAAATTGAATTTTTTTA+GGG - chr8_2:10439122-10439141 Msa1233620:CDS 15.0%
!!! TTTTGTAAAAATATTGGTAT+TGG - chr8_2:10439198-10439217 Msa1233620:CDS 15.0%
!! AAAAAAAAACACAAAACTAA+CGG - chr8_2:10439245-10439264 Msa1233620:CDS 15.0%
!! TTAAAAAAAAACACAACTAT+TGG + chr8_2:10439345-10439364 None:intergenic 15.0%
!! TTCAAATATAAAGAAATAGA+GGG + chr8_2:10439543-10439562 None:intergenic 15.0%
!!! CTCTTAATAGATTTTAAAAT+TGG - chr8_2:10439568-10439587 Msa1233620:intron 15.0%
!!! AATACTGACAATTAAAATTT+TGG + chr8_2:10439738-10439757 None:intergenic 15.0%
!!! ATATTGGTTATAAAATAATC+AGG - chr8_2:10439884-10439903 Msa1233620:CDS 15.0%
!!! TTTCAGTATTAATTTTGAAT+GGG - chr8_2:10440192-10440211 Msa1233620:CDS 15.0%
!!! CATACAAAAAATATGTTTTA+GGG + chr8_2:10442771-10442790 None:intergenic 15.0%
!!! ACATACAAAAAATATGTTTT+AGG + chr8_2:10442772-10442791 None:intergenic 15.0%
!! GCTTAAATGTATAATATCTT+AGG + chr8_2:10438488-10438507 None:intergenic 20.0%
!! ATAAAAAATGAGAAAGAGAA+AGG + chr8_2:10438765-10438784 None:intergenic 20.0%
!!! TTTTTAATTAACCTAATGGT+TGG - chr8_2:10438787-10438806 Msa1233620:CDS 20.0%
!! GCATAATATAATATATGTAG+GGG + chr8_2:10438866-10438885 None:intergenic 20.0%
!! AGAAATAAATAGAGTGAAAA+AGG + chr8_2:10438922-10438941 None:intergenic 20.0%
!!! ATTTTGTCATTTGGTATAAA+TGG - chr8_2:10439079-10439098 Msa1233620:CDS 20.0%
!!! CAATATTTTTACAAAATGCA+GGG + chr8_2:10439194-10439213 None:intergenic 20.0%
!! CTTTGTAAAAATATTGGTAT+TGG + chr8_2:10439308-10439327 None:intergenic 20.0%
!! CTTTGTAAAAATATTGGTAT+TGG + chr8_2:10439308-10439327 None:intergenic 20.0%
!! GTTCAAATATAAAGAAATAG+AGG + chr8_2:10439544-10439563 None:intergenic 20.0%
!! TGAAAACAAAAGAGAAAATA+AGG + chr8_2:10439829-10439848 None:intergenic 20.0%
!! TAATGATGATTCTCAATATA+GGG + chr8_2:10440051-10440070 None:intergenic 20.0%
!! CCTATAAAAATGTCAAAAAT+TGG + chr8_2:10440088-10440107 None:intergenic 20.0%
!!! CCAATTTTTGACATTTTTAT+AGG - chr8_2:10440085-10440104 Msa1233620:CDS 20.0%
!!! CTTTCAGTATTAATTTTGAA+TGG - chr8_2:10440191-10440210 Msa1233620:CDS 20.0%
!!! AATTTTTATTCTTACCTTGT+TGG + chr8_2:10440389-10440408 None:intergenic 20.0%
!!! TCATTCAAAATATCAAGTTT+TGG + chr8_2:10440582-10440601 None:intergenic 20.0%
!! GTATGAAATATATTATTGGT+AGG + chr8_2:10441343-10441362 None:intergenic 20.0%
!! AATCATATATAGAAAGCTAA+TGG - chr8_2:10441365-10441384 Msa1233620:CDS 20.0%
!!! TTTATAATTGGTGACATTAT+TGG - chr8_2:10441581-10441600 Msa1233620:intron 20.0%
!! TTCATGAGTTAATCATAAAT+AGG + chr8_2:10442221-10442240 None:intergenic 20.0%
!!! CATAAATTTTTATGTTCATG+TGG - chr8_2:10442577-10442596 Msa1233620:intron 20.0%
!! ACTTATACATTTCTATTAGA+CGG - chr8_2:10442682-10442701 Msa1233620:intron 20.0%
!! ATATATAATAACATGATCGT+AGG + chr8_2:10443648-10443667 None:intergenic 20.0%
!! TTCCTGAAATAAAATCATTA+AGG + chr8_2:10443773-10443792 None:intergenic 20.0%
! ACAATGTATTAGTTCAAAAG+AGG + chr8_2:10438390-10438409 None:intergenic 25.0%
!!! TTATAGTAGTTGATGAGATT+AGG + chr8_2:10438416-10438435 None:intergenic 25.0%
! ATTAAAGGTAGTATAGCTAA+TGG - chr8_2:10438985-10439004 Msa1233620:CDS 25.0%
! TCCAATAAGTGTGATATATT+TGG - chr8_2:10439031-10439050 Msa1233620:CDS 25.0%
!! GGACTTTATATTTTGTCATT+TGG - chr8_2:10439070-10439089 Msa1233620:CDS 25.0%
!!! CCAATATTTTTACAAAATGC+AGG + chr8_2:10439195-10439214 None:intergenic 25.0%
!! CCTGCATTTTGTAAAAATAT+TGG - chr8_2:10439192-10439211 Msa1233620:CDS 25.0%
! TTTAACAGAAAGTTAACAGA+GGG + chr8_2:10439360-10439379 None:intergenic 25.0%
!! TTTTAACAGAAAGTTAACAG+AGG + chr8_2:10439359-10439378 None:intergenic 25.0%
! CTTGCACTTTGTAAAAATAT+TGG + chr8_2:10439314-10439333 None:intergenic 25.0%
!!! CAATATTTTTACAAAGTGCA+AGG - chr8_2:10439312-10439331 Msa1233620:CDS 25.0%
! AAAAACACAACTATTGGTAT+TGG + chr8_2:10439339-10439358 None:intergenic 25.0%
!! TTTTAACAGAAAGTTAACAG+AGG - chr8_2:10439359-10439378 Msa1233620:intron 25.0%
! TTTAACAGAAAGTTAACAGA+GGG - chr8_2:10439360-10439379 Msa1233620:intron 25.0%
!!! CAATATTTTTACAAAGTGCA+GGG - chr8_2:10439312-10439331 Msa1233620:CDS 25.0%
!!! CACTTTTTTTTGTTTGGAAT+TGG + chr8_2:10439418-10439437 None:intergenic 25.0%
!! TGGCAAATTTTAAATAGCTA+TGG + chr8_2:10439519-10439538 None:intergenic 25.0%
! AATATAAAGAAATAGAGGGA+TGG + chr8_2:10439539-10439558 None:intergenic 25.0%
! GTGACTTTAATGTAGAATAT+TGG - chr8_2:10439868-10439887 Msa1233620:CDS 25.0%
! TCTAGTCTAGTTATATGAAA+GGG + chr8_2:10439945-10439964 None:intergenic 25.0%
! CTAATGATGATTCTCAATAT+AGG + chr8_2:10440052-10440071 None:intergenic 25.0%
!! TTTGACATTTTTATAGGAAC+TGG - chr8_2:10440091-10440110 Msa1233620:CDS 25.0%
!! ATTTTTATAGGAACTGGAAA+AGG - chr8_2:10440097-10440116 Msa1233620:CDS 25.0%
! TACATCAAGAATTATATGCA+AGG - chr8_2:10440244-10440263 Msa1233620:CDS 25.0%
! TTATGATGTCTACAATGATT+TGG - chr8_2:10440729-10440748 Msa1233620:CDS 25.0%
! TATGATGTCTACAATGATTT+GGG - chr8_2:10440730-10440749 Msa1233620:CDS 25.0%
! AAGAAAAACTAAAACAGGTT+AGG - chr8_2:10440840-10440859 Msa1233620:intron 25.0%
! CAACCAAAAAACATATGTTT+AGG + chr8_2:10440892-10440911 None:intergenic 25.0%
!!! ACCAAAATCTTTAGAATCAT+AGG + chr8_2:10440933-10440952 None:intergenic 25.0%
!! TATATACCTTGAATCACTTT+TGG + chr8_2:10441302-10441321 None:intergenic 25.0%
! AATATATTATTGGTAGGACT+AGG + chr8_2:10441337-10441356 None:intergenic 25.0%
! AAATTTCTTACTATGAACAG+TGG - chr8_2:10441397-10441416 Msa1233620:CDS 25.0%
!!! TGTTTTTTTTCTTTCCAAAG+TGG - chr8_2:10441753-10441772 Msa1233620:intron 25.0%
!! GTATGTACAATCTATTGTTT+TGG + chr8_2:10441877-10441896 None:intergenic 25.0%
!!! GCATTTATTTTCCTCAAATA+TGG + chr8_2:10441923-10441942 None:intergenic 25.0%
! ATTATCTTGCAAGAAAAGAA+TGG + chr8_2:10441975-10441994 None:intergenic 25.0%
!! ATTCTTTTCTTGCAAGATAA+TGG - chr8_2:10441974-10441993 Msa1233620:CDS 25.0%
! ATTAATGAGATTCATACCAA+TGG + chr8_2:10442171-10442190 None:intergenic 25.0%
! TTATTGAATCAACTTTCTTG+TGG - chr8_2:10442414-10442433 Msa1233620:intron 25.0%
! TATTGAATCAACTTTCTTGT+GGG - chr8_2:10442415-10442434 Msa1233620:intron 25.0%
!!! TACCTTTTGATTAGATCATT+AGG + chr8_2:10442506-10442525 None:intergenic 25.0%
! AAAAGGTAACCTTATATCTT+TGG - chr8_2:10442518-10442537 Msa1233620:intron 25.0%
! CTTATACATTTCTATTAGAC+GGG - chr8_2:10442683-10442702 Msa1233620:intron 25.0%
!!! ATGAATCTTCTACTTTTTGT+TGG + chr8_2:10443181-10443200 None:intergenic 25.0%
!!! AGCCTTAATGATTTTATTTC+AGG - chr8_2:10443768-10443787 Msa1233620:five_prime_UTR 25.0%
! TTTGAACCATATGAGATAAT+TGG + chr8_2:10443796-10443815 None:intergenic 25.0%
! TATCTCATATGGTTCAAATA+TGG - chr8_2:10443798-10443817 Msa1233620:five_prime_UTR 25.0%
AGCATTAAAGATGACTTCAT+TGG - chr8_2:10438505-10438524 Msa1233620:three_prime_UTR 30.0%
! ATTTTAAACGTGGAGAAGTA+GGG - chr8_2:10438819-10438838 Msa1233620:CDS 30.0%
GCCAAATATATCACACTTAT+TGG + chr8_2:10439035-10439054 None:intergenic 30.0%
TTAGGGTTTAAATGTGTCAT+TGG - chr8_2:10439139-10439158 Msa1233620:CDS 30.0%
!!! GTCTTTGCACTTCTTTTTTT+TGG - chr8_2:10439161-10439180 Msa1233620:CDS 30.0%
CCTGCACTTTGTAAAAATAT+TGG + chr8_2:10439393-10439412 None:intergenic 30.0%
!! CCAATATTTTTACAAAGTGC+AGG - chr8_2:10439311-10439330 Msa1233620:CDS 30.0%
! TTCCAAACAAAAAAAAGTGC+AGG - chr8_2:10439419-10439438 Msa1233620:intron 30.0%
! TCCAAACAAAAAAAAGTGCA+GGG - chr8_2:10439420-10439439 Msa1233620:intron 30.0%
GGTATCAAAAACTCTTAATG+TGG + chr8_2:10439788-10439807 None:intergenic 30.0%
AGGTAAATCTTAATGAGTTG+CGG + chr8_2:10439809-10439828 None:intergenic 30.0%
GTCTAGTCTAGTTATATGAA+AGG + chr8_2:10439946-10439965 None:intergenic 30.0%
TCATATAACTAGACTAGACT+AGG - chr8_2:10439947-10439966 Msa1233620:intron 30.0%
TGACCAAGTAAAACGATAAA+TGG - chr8_2:10439976-10439995 Msa1233620:intron 30.0%
! GATCCATTTATCGTTTTACT+TGG + chr8_2:10439982-10440001 None:intergenic 30.0%
!! GTTTTTAGAAATGTGTGTAG+AGG - chr8_2:10440460-10440479 Msa1233620:CDS 30.0%
GCTATATAGCTATGATAAAG+TGG + chr8_2:10440542-10440561 None:intergenic 30.0%
TCTTGTCTATAGTACACTAA+TGG + chr8_2:10440646-10440665 None:intergenic 30.0%
! AAGAGTTGAAGACTTTAAGA+GGG - chr8_2:10440665-10440684 Msa1233620:intron 30.0%
!!! TGTTTTAGTTTTTCTTCTGC+CGG + chr8_2:10440836-10440855 None:intergenic 30.0%
CAAAATATGGCACAAGTATT+TGG + chr8_2:10440868-10440887 None:intergenic 30.0%
! CAAATACTTGTGCCATATTT+TGG - chr8_2:10440866-10440885 Msa1233620:intron 30.0%
CATATGTTTAGGCCAAAATA+TGG + chr8_2:10440881-10440900 None:intergenic 30.0%
!!! TGGCCTAAACATATGTTTTT+TGG - chr8_2:10440886-10440905 Msa1233620:CDS 30.0%
!! AATCTTTAGAATCATAGGCT+AGG + chr8_2:10440928-10440947 None:intergenic 30.0%
!! GCCTATGATTCTAAAGATTT+TGG - chr8_2:10440929-10440948 Msa1233620:CDS 30.0%
!! ATCTTGAAAGGTGTTAAACT+CGG + chr8_2:10441156-10441175 None:intergenic 30.0%
ACACATCATCAAAAAACTCT+CGG - chr8_2:10441481-10441500 Msa1233620:CDS 30.0%
!!! TTGGTTGCTACTTTTAATTC+AGG - chr8_2:10441600-10441619 Msa1233620:intron 30.0%
AAGCTAGATAGCCAAAAATT+TGG - chr8_2:10441640-10441659 Msa1233620:intron 30.0%
!!! TGGTGTTATCACCAAATTTT+TGG + chr8_2:10441654-10441673 None:intergenic 30.0%
CACCATAACTAAAGAAAACT+TGG - chr8_2:10441675-10441694 Msa1233620:intron 30.0%
! CTCCAAGTTTTCTTTAGTTA+TGG + chr8_2:10441680-10441699 None:intergenic 30.0%
AATAAATGCAAGTGAGACAA+AGG - chr8_2:10441934-10441953 Msa1233620:CDS 30.0%
ATTTACAACAACAAAAGCCT+TGG + chr8_2:10442122-10442141 None:intergenic 30.0%
GAAGCAAGAGTTTATGAATA+GGG + chr8_2:10442328-10442347 None:intergenic 30.0%
ATTGAATCAACTTTCTTGTG+GGG - chr8_2:10442416-10442435 Msa1233620:intron 30.0%
ATTGGAATTTCATTGAGCAA+GGG - chr8_2:10442477-10442496 Msa1233620:intron 30.0%
TGCCTAATGATCTAATCAAA+AGG - chr8_2:10442501-10442520 Msa1233620:intron 30.0%
AATGACTGACCAAAGATATA+AGG + chr8_2:10442530-10442549 None:intergenic 30.0%
! TTTTTATGTTCATGTGGTGT+CGG - chr8_2:10442583-10442602 Msa1233620:intron 30.0%
!!! CCATTTTACAACTGTTTTTG+AGG + chr8_2:10442718-10442737 None:intergenic 30.0%
CCTCAAAAACAGTTGTAAAA+TGG - chr8_2:10442715-10442734 Msa1233620:intron 30.0%
!! TTCTGATGGACTAGAAATAT+GGG - chr8_2:10442889-10442908 Msa1233620:intron 30.0%
TTAAGGATATATCCTCCATA+CGG + chr8_2:10443154-10443173 None:intergenic 30.0%
!!! ATCTTCTACTTTTTGTTGGT+CGG + chr8_2:10443177-10443196 None:intergenic 30.0%
!! TCAGTAAGAGTATCATTCTT+TGG + chr8_2:10443277-10443296 None:intergenic 30.0%
ATAGAATTGAAGGTGACAAT+TGG - chr8_2:10443353-10443372 Msa1233620:intron 30.0%
! TTTTAGATGGAGATACTGTT+GGG + chr8_2:10443559-10443578 None:intergenic 30.0%
! ATTTTAGATGGAGATACTGT+TGG + chr8_2:10443560-10443579 None:intergenic 30.0%
AACAGTATCTCCATCTAAAA+TGG - chr8_2:10443559-10443578 Msa1233620:CDS 30.0%
AACAGGACTATAATGTTACA+AGG + chr8_2:10443737-10443756 None:intergenic 30.0%
TAAATACGAACCATTCCCTA+TGG - chr8_2:10438433-10438452 Msa1233620:three_prime_UTR 35.0%
AAGATGACTTCATTGGTGAA+AGG - chr8_2:10438512-10438531 Msa1233620:three_prime_UTR 35.0%
TCTCTTTGATAAGCACGAAA+AGG - chr8_2:10438535-10438554 Msa1233620:three_prime_UTR 35.0%
TCAACTTGAGAGCTATAGAA+CGG + chr8_2:10438712-10438731 None:intergenic 35.0%
! CATTTTAAACGTGGAGAAGT+AGG - chr8_2:10438818-10438837 Msa1233620:CDS 35.0%
AAGTGTGATATATTTGGCGT+TGG - chr8_2:10439037-10439056 Msa1233620:CDS 35.0%
!!! TTTGGCGTTGGTAAATGTTT+TGG - chr8_2:10439049-10439068 Msa1233620:CDS 35.0%
TTGGTATAAATGGAACTACG+TGG - chr8_2:10439089-10439108 Msa1233620:CDS 35.0%
TGGTATAAATGGAACTACGT+GGG - chr8_2:10439090-10439109 Msa1233620:CDS 35.0%
!!! GCACTTCTTTTTTTTGGCAT+TGG - chr8_2:10439167-10439186 Msa1233620:CDS 35.0%
!!! TCCCTGCACTTTTTTTTGTT+TGG + chr8_2:10439424-10439443 None:intergenic 35.0%
! CAAAATCTGATGAAAGTGCA+GGG - chr8_2:10439451-10439470 Msa1233620:intron 35.0%
GGTAAAGAGATCATAGAAGT+AGG + chr8_2:10439635-10439654 None:intergenic 35.0%
GGTAAAAGAGTCTAAGTAGT+CGG + chr8_2:10439656-10439675 None:intergenic 35.0%
!! TTTTGTTTGTCTCCCAATGT+TGG + chr8_2:10440169-10440188 None:intergenic 35.0%
TTCTTGATGTAAAAAGCTCC+AGG + chr8_2:10440235-10440254 None:intergenic 35.0%
CTTGAAGATATTCCAAACCA+TGG - chr8_2:10440292-10440311 Msa1233620:CDS 35.0%
ACATCAGAGTTGAAGAGATT+AGG + chr8_2:10440503-10440522 None:intergenic 35.0%
GAAGAGTTGAAGACTTTAAG+AGG - chr8_2:10440664-10440683 Msa1233620:intron 35.0%
! AGAGTTGAAGACTTTAAGAG+GGG - chr8_2:10440666-10440685 Msa1233620:intron 35.0%
!! AATTGGCTCGTCAAATTCTT+GGG - chr8_2:10440773-10440792 Msa1233620:intron 35.0%
GGCAGAAGAAAAACTAAAAC+AGG - chr8_2:10440835-10440854 Msa1233620:intron 35.0%
CAAATGATTCATCTCTTGGA+AGG + chr8_2:10441031-10441050 None:intergenic 35.0%
CTTCCAAGAGATGAATCATT+TGG - chr8_2:10441029-10441048 Msa1233620:CDS 35.0%
TGTCCAAATGATTCATCTCT+TGG + chr8_2:10441035-10441054 None:intergenic 35.0%
GTAACTACAGATCTCAATTG+AGG + chr8_2:10441116-10441135 None:intergenic 35.0%
!! TCTTGAAAGGTGTTAAACTC+GGG + chr8_2:10441155-10441174 None:intergenic 35.0%
! ACAATGGTATTGGACTAATC+TGG + chr8_2:10441229-10441248 None:intergenic 35.0%
TAGTCCAATACCATTGTTCA+AGG - chr8_2:10441232-10441251 Msa1233620:intron 35.0%
AGTTCCTTGAACAATGGTAT+TGG + chr8_2:10441239-10441258 None:intergenic 35.0%
!! ATACCTTGAATCACTTTTGG+TGG + chr8_2:10441299-10441318 None:intergenic 35.0%
!!! GAGAGTTTTTTGATGATGTG+TGG + chr8_2:10441482-10441501 None:intergenic 35.0%
! GTTTTCTTTAGTTATGGTGC+TGG + chr8_2:10441674-10441693 None:intergenic 35.0%
! AAAATTCACGAATGCCACTT+TGG + chr8_2:10441770-10441789 None:intergenic 35.0%
! ATAAGATCGACTTTAACCAC+TGG - chr8_2:10441826-10441845 Msa1233620:CDS 35.0%
! TAAGATCGACTTTAACCACT+GGG - chr8_2:10441827-10441846 Msa1233620:CDS 35.0%
TTCCTCAAATATGGAAAGAG+CGG + chr8_2:10441914-10441933 None:intergenic 35.0%
!! AAGAATGGTTCTAGTAGCAT+AGG + chr8_2:10441960-10441979 None:intergenic 35.0%
!! TAATGGAACTTTGAAGCCAT+TGG - chr8_2:10441991-10442010 Msa1233620:CDS 35.0%
! CTATTTGTTGCTATGACGAA+TGG + chr8_2:10442287-10442306 None:intergenic 35.0%
CATTCGTCATAGCAACAAAT+AGG - chr8_2:10442285-10442304 Msa1233620:intron 35.0%
AACAAATAGGCATCTTAGTG+TGG - chr8_2:10442298-10442317 Msa1233620:intron 35.0%
GGAAGCAAGAGTTTATGAAT+AGG + chr8_2:10442329-10442348 None:intergenic 35.0%
TTCATTGTGTCACGATAATG+TGG + chr8_2:10442350-10442369 None:intergenic 35.0%
! AATGTCTGCTGTTGTTTACA+AGG - chr8_2:10442454-10442473 Msa1233620:intron 35.0%
GATTGGAATTTCATTGAGCA+AGG - chr8_2:10442476-10442495 Msa1233620:intron 35.0%
!! CTTCCTTGCTTGTTATTTAG+AGG - chr8_2:10442800-10442819 Msa1233620:intron 35.0%
ACTCCTCTAAATAACAAGCA+AGG + chr8_2:10442806-10442825 None:intergenic 35.0%
AAGGATAATCCTCTATCAGA+AGG + chr8_2:10442865-10442884 None:intergenic 35.0%
GATTATCCTTATGCTTCTGA+TGG - chr8_2:10442875-10442894 Msa1233620:intron 35.0%
!! CTTCTGATGGACTAGAAATA+TGG - chr8_2:10442888-10442907 Msa1233620:intron 35.0%
! ATTCTGGAAAGAACTTGTAG+AGG - chr8_2:10442997-10443016 Msa1233620:intron 35.0%
TGAAGCAATCCATATAAGGA+TGG + chr8_2:10443098-10443117 None:intergenic 35.0%
AACTTTGGACAATATCCGTA+TGG - chr8_2:10443136-10443155 Msa1233620:intron 35.0%
!! TACTTTTTGTTGGTCGGTTA+AGG + chr8_2:10443171-10443190 None:intergenic 35.0%
!! TACTGACTTGACCATTATAG+AGG - chr8_2:10443291-10443310 Msa1233620:intron 35.0%
TACCTTGGAGATAGAATTGA+AGG - chr8_2:10443343-10443362 Msa1233620:intron 35.0%
TTGAGCAAAAACTCACTCAA+AGG - chr8_2:10443434-10443453 Msa1233620:intron 35.0%
ATGATGAGACATTGAGGAAT+CGG - chr8_2:10443461-10443480 Msa1233620:CDS 35.0%
! ATCTCCATCTAAAATGGTCA+TGG - chr8_2:10443565-10443584 Msa1233620:CDS 35.0%
! ACAACCATGACCATTTTAGA+TGG + chr8_2:10443572-10443591 None:intergenic 35.0%
! TGCTTTGAATAACAGTGAGA+AGG - chr8_2:10443600-10443619 Msa1233620:CDS 35.0%
CAGGAACCAATTATCTCATA+TGG - chr8_2:10443787-10443806 Msa1233620:five_prime_UTR 35.0%
TGTCTTGTAACCATAGGGAA+TGG + chr8_2:10438446-10438465 None:intergenic 40.0%
GCTTGTGTCTTGTAACCATA+GGG + chr8_2:10438451-10438470 None:intergenic 40.0%
TGCTTGTGTCTTGTAACCAT+AGG + chr8_2:10438452-10438471 None:intergenic 40.0%
TGATAAGCACGAAAAGGTGA+AGG - chr8_2:10438541-10438560 Msa1233620:three_prime_UTR 40.0%
GATAAGCACGAAAAGGTGAA+GGG - chr8_2:10438542-10438561 Msa1233620:three_prime_UTR 40.0%
AACATCACCAATAGCACCTA+TGG + chr8_2:10438651-10438670 None:intergenic 40.0%
!! ATTAGTGCTACAAGTGCTGA+TGG - chr8_2:10438731-10438750 Msa1233620:CDS 40.0%
! GAGCTCACACATTTTAAACG+TGG - chr8_2:10438809-10438828 Msa1233620:CDS 40.0%
TCTCTGTGAACTAACTCGAT+TGG + chr8_2:10438899-10438918 None:intergenic 40.0%
GGTATAAATGGAACTACGTG+GGG - chr8_2:10439091-10439110 Msa1233620:CDS 40.0%
GTATAAATGGAACTACGTGG+GGG - chr8_2:10439092-10439111 Msa1233620:CDS 40.0%
CAACGTGGCATGAAATGATT+GGG + chr8_2:10439283-10439302 None:intergenic 40.0%
!! ATATTGGTATTGGTGCAACG+TGG + chr8_2:10439298-10439317 None:intergenic 40.0%
!! CTTTCATCAGATTTTGGCGT+TGG + chr8_2:10439447-10439466 None:intergenic 40.0%
! CCTGCACTTTCATCAGATTT+TGG + chr8_2:10439453-10439472 None:intergenic 40.0%
! CCAAAATCTGATGAAAGTGC+AGG - chr8_2:10439450-10439469 Msa1233620:intron 40.0%
! ACTCTTTTACCAACACTGTG+TGG - chr8_2:10439665-10439684 Msa1233620:intron 40.0%
AAGTGGTAGACATTTGTACG+TGG - chr8_2:10439691-10439710 Msa1233620:CDS 40.0%
TTGTACGTGGAGGATATCTT+TGG - chr8_2:10439704-10439723 Msa1233620:CDS 40.0%
GGAACTGGAAAAGGAAAAGT+TGG - chr8_2:10440106-10440125 Msa1233620:CDS 40.0%
TGGAAAAGGAAAAGTTGGAC+AGG - chr8_2:10440111-10440130 Msa1233620:CDS 40.0%
GGACAGGAAACATTTCTGAA+AGG - chr8_2:10440127-10440146 Msa1233620:CDS 40.0%
TCTTACCTCCATACCAACAT+TGG - chr8_2:10440153-10440172 Msa1233620:CDS 40.0%
CTTACCTCCATACCAACATT+GGG - chr8_2:10440154-10440173 Msa1233620:CDS 40.0%
TTTGTCTCCCAATGTTGGTA+TGG + chr8_2:10440164-10440183 None:intergenic 40.0%
! TTTTGAATGGGACAGTGACA+TGG - chr8_2:10440204-10440223 Msa1233620:CDS 40.0%
TTTGAATGGGACAGTGACAT+GGG - chr8_2:10440205-10440224 Msa1233620:CDS 40.0%
CTTCAAGTGTCAAACTCACA+AGG + chr8_2:10440279-10440298 None:intergenic 40.0%
AAACAAAGTGGATGGATCCA+TGG + chr8_2:10440312-10440331 None:intergenic 40.0%
TGAGTTGCAAACAAAGTGGA+TGG + chr8_2:10440320-10440339 None:intergenic 40.0%
! TCCACTTTGTTTGCAACTCA+TGG - chr8_2:10440320-10440339 Msa1233620:intron 40.0%
TCCATGAGTTGCAAACAAAG+TGG + chr8_2:10440324-10440343 None:intergenic 40.0%
ATACCTTCCAAGTGAAACAC+CGG - chr8_2:10440618-10440637 Msa1233620:intron 40.0%
CTATAGTACACTAATGGAGC+CGG + chr8_2:10440640-10440659 None:intergenic 40.0%
! TTGAAGACTTTAAGAGGGGA+TGG - chr8_2:10440670-10440689 Msa1233620:intron 40.0%
AGAATTTGACGAGCCAATTG+AGG + chr8_2:10440772-10440791 None:intergenic 40.0%
!! CAATTGGCTCGTCAAATTCT+TGG - chr8_2:10440772-10440791 Msa1233620:intron 40.0%
!! ATTGGCTCGTCAAATTCTTG+GGG - chr8_2:10440774-10440793 Msa1233620:intron 40.0%
TCATAGGCTAGGTAAACATC+TGG + chr8_2:10440917-10440936 None:intergenic 40.0%
TCTCTTGGAAGGTAAACAGT+GGG + chr8_2:10441020-10441039 None:intergenic 40.0%
ATCTCTTGGAAGGTAAACAG+TGG + chr8_2:10441021-10441040 None:intergenic 40.0%
!! CTTGAAAGGTGTTAAACTCG+GGG + chr8_2:10441154-10441173 None:intergenic 40.0%
! ATCTGGCTTAGTACATCAGT+AGG + chr8_2:10441212-10441231 None:intergenic 40.0%
CGGAAAAGTTCCTTGAACAA+TGG + chr8_2:10441245-10441264 None:intergenic 40.0%
! AAGGAACTTTTCCGATCTGA+TGG - chr8_2:10441251-10441270 Msa1233620:intron 40.0%
AGACTGATGAGGAATTTGCA+AGG - chr8_2:10441435-10441454 Msa1233620:CDS 40.0%
GACTGATGAGGAATTTGCAA+GGG - chr8_2:10441436-10441455 Msa1233620:CDS 40.0%
AGAAAACTTGGAGCCAAACA+TGG - chr8_2:10441687-10441706 Msa1233620:intron 40.0%
GAAAACTTGGAGCCAAACAT+GGG - chr8_2:10441688-10441707 Msa1233620:intron 40.0%
! AATTTGAAATCTGTCCCTCG+AGG - chr8_2:10441801-10441820 Msa1233620:CDS 40.0%
AGTCGATCTTATAACCTCGA+GGG + chr8_2:10441818-10441837 None:intergenic 40.0%
AAGTCGATCTTATAACCTCG+AGG + chr8_2:10441819-10441838 None:intergenic 40.0%
TCCTCAAATATGGAAAGAGC+GGG + chr8_2:10441913-10441932 None:intergenic 40.0%
GACCAAAACTATCACCTTGA+GGG + chr8_2:10442039-10442058 None:intergenic 40.0%
GGCAAGTAAACATTGCTAAC+AGG + chr8_2:10442061-10442080 None:intergenic 40.0%
!! AAGGTGTTGAAGCATCAGTT+TGG - chr8_2:10442089-10442108 Msa1233620:intron 40.0%
TGAATATCGACATGTGTGAC+AGG - chr8_2:10442237-10442256 Msa1233620:intron 40.0%
! AAACGTATTGGTCAATGCAG+AGG - chr8_2:10442388-10442407 Msa1233620:intron 40.0%
! AACGTATTGGTCAATGCAGA+GGG - chr8_2:10442389-10442408 Msa1233620:intron 40.0%
CTTGTGGGGAAATTATGCTT+TGG - chr8_2:10442430-10442449 Msa1233620:intron 40.0%
! CTGCTGTTGTTTACAAGGAT+TGG - chr8_2:10442459-10442478 Msa1233620:intron 40.0%
ATTTAGAGGAGTAGCTGTTG+AGG - chr8_2:10442814-10442833 Msa1233620:intron 40.0%
GATAATCCTCTATCAGAAGG+CGG + chr8_2:10442862-10442881 None:intergenic 40.0%
! TCTAGTCCATCAGAAGCATA+AGG + chr8_2:10442884-10442903 None:intergenic 40.0%
TTCACCAACCCATGACTTAA+TGG + chr8_2:10442918-10442937 None:intergenic 40.0%
ATTCTGAACTCCAAGCATTC+TGG - chr8_2:10442981-10443000 Msa1233620:intron 40.0%
CAAGTTCTTTCCAGAATGCT+TGG + chr8_2:10442994-10443013 None:intergenic 40.0%
TGGAAAGAACTTGTAGAGGT+TGG - chr8_2:10443001-10443020 Msa1233620:intron 40.0%
GTGACTTAAAGAATGCCACA+TGG - chr8_2:10443029-10443048 Msa1233620:intron 40.0%
ACTTAAAGAATGCCACATGG+TGG - chr8_2:10443032-10443051 Msa1233620:intron 40.0%
TTGCATCTTAAACCACCATG+TGG + chr8_2:10443047-10443066 None:intergenic 40.0%
! GTTTAAGATGCAAACTCGTG+AGG - chr8_2:10443054-10443073 Msa1233620:intron 40.0%
AAGCTTCCACCATCCTTATA+TGG - chr8_2:10443086-10443105 Msa1233620:intron 40.0%
AGCAATCCATATAAGGATGG+TGG + chr8_2:10443095-10443114 None:intergenic 40.0%
GTGCTGAAGCAATCCATATA+AGG + chr8_2:10443102-10443121 None:intergenic 40.0%
CTTCATGCAGCTGTTAACTT+TGG - chr8_2:10443121-10443140 Msa1233620:intron 40.0%
TTTGGACAATATCCGTATGG+AGG - chr8_2:10443139-10443158 Msa1233620:intron 40.0%
AGAAGATTCATGCCTGAGAA+AGG - chr8_2:10443190-10443209 Msa1233620:intron 40.0%
TTAGCAAGCTCATCATACTC+AGG + chr8_2:10443220-10443239 None:intergenic 40.0%
!! TGAGTATGATGAGCTTGCTA+AGG - chr8_2:10443219-10443238 Msa1233620:intron 40.0%
ACTACCAGAAGACCTATTTG+AGG - chr8_2:10443242-10443261 Msa1233620:intron 40.0%
TTGTCCTCAAATAGGTCTTC+TGG + chr8_2:10443249-10443268 None:intergenic 40.0%
TGGTGTGATTGTCCTCAAAT+AGG + chr8_2:10443257-10443276 None:intergenic 40.0%
CCTTGACAAGACCTCTATAA+TGG + chr8_2:10443305-10443324 None:intergenic 40.0%
! CCATTATAGAGGTCTTGTCA+AGG - chr8_2:10443302-10443321 Msa1233620:intron 40.0%
CACCTTCAATTCTATCTCCA+AGG + chr8_2:10443348-10443367 None:intergenic 40.0%
! AACCTCTTGAAGGCTTCTTT+TGG + chr8_2:10443394-10443413 None:intergenic 40.0%
AAAGAAGCCTTCAAGAGGTT+TGG - chr8_2:10443394-10443413 Msa1233620:intron 40.0%
CTTCTTTCCAAACCTCTTGA+AGG + chr8_2:10443404-10443423 None:intergenic 40.0%
CAAGAGGTTTGGAAAGAAGT+TGG - chr8_2:10443405-10443424 Msa1233620:intron 40.0%
GGAACAATGATGAGACATTG+AGG - chr8_2:10443455-10443474 Msa1233620:CDS 40.0%
TGATCGTAGGTAAGAAGTGA+GGG + chr8_2:10443635-10443654 None:intergenic 40.0%
ATGATCGTAGGTAAGAAGTG+AGG + chr8_2:10443636-10443655 None:intergenic 40.0%
AAGGCTGCATTTGATACAAC+AGG + chr8_2:10443754-10443773 None:intergenic 40.0%
CAAAGCCCTACTGGTATCAT+TGG - chr8_2:10438620-10438639 Msa1233620:CDS 45.0%
CACCACCAATGATACCAGTA+GGG + chr8_2:10438628-10438647 None:intergenic 45.0%
ATGTGTGAGCTCCAACCATT+AGG + chr8_2:10438801-10438820 None:intergenic 45.0%
GCAACGTGGCATGAAATGAT+TGG + chr8_2:10439284-10439303 None:intergenic 45.0%
TGGTAGACATTTGTACGTGG+AGG - chr8_2:10439694-10439713 Msa1233620:CDS 45.0%
CGAGTTCGATTCTCACATCT+AGG + chr8_2:10439762-10439781 None:intergenic 45.0%
AAGTGGATGGATCCATGGTT+TGG + chr8_2:10440307-10440326 None:intergenic 45.0%
CCTTGTTGGCAAAGAAGATG+CGG + chr8_2:10440375-10440394 None:intergenic 45.0%
! ACTTTAAGAGGGGATGGAAC+AGG - chr8_2:10440676-10440695 Msa1233620:intron 45.0%
! TTGGCTCGTCAAATTCTTGG+GGG - chr8_2:10440775-10440794 Msa1233620:intron 45.0%
GTGCTTGTTCACCATCAGAT+CGG + chr8_2:10441265-10441284 None:intergenic 45.0%
!! CCTTGAATCACTTTTGGTGG+TGG + chr8_2:10441296-10441315 None:intergenic 45.0%
CCACCACCAAAAGTGATTCA+AGG - chr8_2:10441293-10441312 Msa1233620:intron 45.0%
TTTGCAAGGGAGATGATTGC+TGG - chr8_2:10441449-10441468 Msa1233620:CDS 45.0%
TTGCAAGGGAGATGATTGCT+GGG - chr8_2:10441450-10441469 Msa1233620:CDS 45.0%
!! CTATCTAGCTTGCTCTTTGG+TGG + chr8_2:10441631-10441650 None:intergenic 45.0%
!! TGGCTATCTAGCTTGCTCTT+TGG + chr8_2:10441634-10441653 None:intergenic 45.0%
ATGACAAAAGTCGAACCCAG+TGG + chr8_2:10441845-10441864 None:intergenic 45.0%
! GGGTTCGACTTTTGTCATAC+AGG - chr8_2:10441847-10441866 Msa1233620:CDS 45.0%
ACCCGCTCTTTCCATATTTG+AGG - chr8_2:10441909-10441928 Msa1233620:CDS 45.0%
CTGCTTAGTTCAATGGCCAA+TGG + chr8_2:10442010-10442029 None:intergenic 45.0%
CATTGGCCATTGAACTAAGC+AGG - chr8_2:10442008-10442027 Msa1233620:CDS 45.0%
AAACTATCACCTTGAGGGTG+TGG + chr8_2:10442034-10442053 None:intergenic 45.0%
! CACCCTCAAGGTGATAGTTT+TGG - chr8_2:10442034-10442053 Msa1233620:CDS 45.0%
GGACCAAAACTATCACCTTG+AGG + chr8_2:10442040-10442059 None:intergenic 45.0%
TGCTTCAACACCTTCACTTG+CGG + chr8_2:10442083-10442102 None:intergenic 45.0%
CAACAACAAAAGCCTTGGCA+AGG + chr8_2:10442117-10442136 None:intergenic 45.0%
ATCACCAACTTGTCAGCCAT+TGG - chr8_2:10442152-10442171 Msa1233620:intron 45.0%
CATACCAATGGCTGACAAGT+TGG + chr8_2:10442159-10442178 None:intergenic 45.0%
GAATGGCTCAACAACAGCAT+GGG + chr8_2:10442270-10442289 None:intergenic 45.0%
TGCACTTGCACGAAACGTAT+TGG - chr8_2:10442376-10442395 Msa1233620:intron 45.0%
! TTATGTTCATGTGGTGTCGG+TGG - chr8_2:10442586-10442605 Msa1233620:intron 45.0%
! TATGGGCTGCCATTAAGTCA+TGG - chr8_2:10442906-10442925 Msa1233620:intron 45.0%
! ATGGGCTGCCATTAAGTCAT+GGG - chr8_2:10442907-10442926 Msa1233620:intron 45.0%
! GAACTTGTAGAGGTTGGTCA+TGG - chr8_2:10443007-10443026 Msa1233620:intron 45.0%
TACTCAGGTGATCCTTTCTC+AGG + chr8_2:10443205-10443224 None:intergenic 45.0%
GCTTCTGATGAGCAATACCT+TGG - chr8_2:10443328-10443347 Msa1233620:intron 45.0%
AGCCAAAAGAAGCCTTCAAG+AGG - chr8_2:10443389-10443408 Msa1233620:intron 45.0%
GAGACATTGAGGAATCGGTA+TGG - chr8_2:10443466-10443485 Msa1233620:CDS 45.0%
AGAGTGTATGGCATCTTCAC+AGG + chr8_2:10443493-10443512 None:intergenic 45.0%
GAAGGGTAAAGCAGAGTGTA+TGG + chr8_2:10443505-10443524 None:intergenic 45.0%
TCAATCCTTCCTCGCTAGAA+GGG + chr8_2:10443522-10443541 None:intergenic 45.0%
!! ATTAGATATAATTTAAAAAA+AGG + chr8_2:10439495-10439514 None:intergenic 5.0%
!!! TAATATGTTATTTTTATAAT+TGG - chr8_2:10441569-10441588 Msa1233620:intron 5.0%
CGAAAAGGTGAAGGGAACTG+TGG - chr8_2:10438550-10438569 Msa1233620:three_prime_UTR 50.0%
AGCCCTACTGGTATCATTGG+TGG - chr8_2:10438623-10438642 Msa1233620:CDS 50.0%
GCACCACCAATGATACCAGT+AGG + chr8_2:10438629-10438648 None:intergenic 50.0%
!! GGTATCATTGGTGGTGCCAT+AGG - chr8_2:10438632-10438651 Msa1233620:CDS 50.0%
!! GGTGCTATTGGTGATGTTGC+TGG - chr8_2:10438653-10438672 Msa1233620:CDS 50.0%
! TGACACTGCCACTTCCTTCT+TGG - chr8_2:10438685-10438704 Msa1233620:CDS 50.0%
! GACACTGCCACTTCCTTCTT+GGG - chr8_2:10438686-10438705 Msa1233620:CDS 50.0%
AGCTATAGAACGGCCCAAGA+AGG + chr8_2:10438702-10438721 None:intergenic 50.0%
! GTGGAGAAGTAGGGTATCCA+GGG - chr8_2:10438828-10438847 Msa1233620:CDS 50.0%
AGGGGTTGAGTATCAAACCC+TGG + chr8_2:10438848-10438867 None:intergenic 50.0%
! AAAACTAACGGAGTGCCACG+TGG - chr8_2:10439257-10439276 Msa1233620:CDS 50.0%
CATGAAATGATTGGGCCACG+TGG + chr8_2:10439275-10439294 None:intergenic 50.0%
CCACTTATGCCACACAGTGT+TGG + chr8_2:10439677-10439696 None:intergenic 50.0%
CCAACACTGTGTGGCATAAG+TGG - chr8_2:10439674-10439693 Msa1233620:CDS 50.0%
GTCTCCCAATGTTGGTATGG+AGG + chr8_2:10440161-10440180 None:intergenic 50.0%
GACAGTGACATGGGAATTCC+TGG - chr8_2:10440214-10440233 Msa1233620:CDS 50.0%
GTTGGCAAAGAAGATGCGGT+CGG + chr8_2:10440371-10440390 None:intergenic 50.0%
CCGCATCTTCTTTGCCAACA+AGG - chr8_2:10440372-10440391 Msa1233620:intron 50.0%
AATGGAGCCGGTGTTTCACT+TGG + chr8_2:10440628-10440647 None:intergenic 50.0%
! AACAGGAGAGCGCAAGGAAT+GGG - chr8_2:10440693-10440712 Msa1233620:CDS 50.0%
! GCCTGACTCGAAACCTCAAT+TGG - chr8_2:10440756-10440775 Msa1233620:intron 50.0%
! GCCAATTGAGGTTTCGAGTC+AGG + chr8_2:10440760-10440779 None:intergenic 50.0%
CGATTTCCCTTACCCTCGAA+GGG - chr8_2:10440804-10440823 Msa1233620:intron 50.0%
GATTTCCCTTACCCTCGAAG+GGG - chr8_2:10440805-10440824 Msa1233620:intron 50.0%
TTCTTCCCCTTCGAGGGTAA+GGG + chr8_2:10440813-10440832 None:intergenic 50.0%
GGACTTCGAGTCTCACTGTT+AGG + chr8_2:10440999-10441018 None:intergenic 50.0%
! GAGAGAGCGCACATCTTGAA+AGG + chr8_2:10441168-10441187 None:intergenic 50.0%
GAACAGTGGACCATTCTGCA+TGG - chr8_2:10441411-10441430 Msa1233620:CDS 50.0%
CATCAGTCTGCCATGCAGAA+TGG + chr8_2:10441424-10441443 None:intergenic 50.0%
TTCTGCATGGCAGACTGATG+AGG - chr8_2:10441424-10441443 Msa1233620:CDS 50.0%
TGCAAGGGAGATGATTGCTG+GGG - chr8_2:10441451-10441470 Msa1233620:CDS 50.0%
AACTTGGAGCCAAACATGGG+TGG - chr8_2:10441691-10441710 Msa1233620:intron 50.0%
ACTTGGAGCCAAACATGGGT+GGG - chr8_2:10441692-10441711 Msa1233620:intron 50.0%
AATATGGAAAGAGCGGGTCG+TGG + chr8_2:10441907-10441926 None:intergenic 50.0%
GTGTGGCCTGCTTAGTTCAA+TGG + chr8_2:10442017-10442036 None:intergenic 50.0%
GTTTACTTGCCCGCAAGTGA+AGG - chr8_2:10442070-10442089 Msa1233620:intron 50.0%
GCTTCAACACCTTCACTTGC+GGG + chr8_2:10442082-10442101 None:intergenic 50.0%
! ATCAGTTTGGCTCCTTGCCA+AGG - chr8_2:10442102-10442121 Msa1233620:intron 50.0%
!! GCTGACAAGTTGGTGATAGC+AGG + chr8_2:10442149-10442168 None:intergenic 50.0%
CGAATGGCTCAACAACAGCA+TGG + chr8_2:10442271-10442290 None:intergenic 50.0%
GCTGCCATTAAGTCATGGGT+TGG - chr8_2:10442911-10442930 Msa1233620:intron 50.0%
TCTGCTTTACCCTTCTAGCG+AGG - chr8_2:10443510-10443529 Msa1233620:CDS 50.0%
CTTTACCCTTCTAGCGAGGA+AGG - chr8_2:10443514-10443533 Msa1233620:CDS 50.0%
GTCAATCCTTCCTCGCTAGA+AGG + chr8_2:10443523-10443542 None:intergenic 50.0%
!! GAGGAAGGATTGACTTGCAG+AGG - chr8_2:10443529-10443548 Msa1233620:CDS 50.0%
ACTGCAGCTCAAAGCCCTAC+TGG - chr8_2:10438611-10438630 Msa1233620:exon 55.0%
!! GGTGGTGCCATAGGTGCTAT+TGG - chr8_2:10438641-10438660 Msa1233620:CDS 55.0%
AGAACGGCCCAAGAAGGAAG+TGG + chr8_2:10438696-10438715 None:intergenic 55.0%
! CGTGGAGAAGTAGGGTATCC+AGG - chr8_2:10438827-10438846 Msa1233620:CDS 55.0%
GAGCCGGTGTTTCACTTGGA+AGG + chr8_2:10440624-10440643 None:intergenic 55.0%
! GAACAGGAGAGCGCAAGGAA+TGG - chr8_2:10440692-10440711 Msa1233620:CDS 55.0%
GCGATTTCCCTTACCCTCGA+AGG - chr8_2:10440803-10440822 Msa1233620:intron 55.0%
GTTCTTCCCCTTCGAGGGTA+AGG + chr8_2:10440814-10440833 None:intergenic 55.0%
TACCCTCGAAGGGGAAGAAC+CGG - chr8_2:10440814-10440833 Msa1233620:intron 55.0%
AGATGTGCGCTCTCTCTACG+AGG - chr8_2:10441172-10441191 Msa1233620:CDS 55.0%
GATGTGCGCTCTCTCTACGA+GGG - chr8_2:10441173-10441192 Msa1233620:CDS 55.0%
CTTGGAGCCAAACATGGGTG+GGG - chr8_2:10441693-10441712 Msa1233620:intron 55.0%
ACAGTGACCCCACCCATGTT+TGG + chr8_2:10441703-10441722 None:intergenic 55.0%
AAACATGGGTGGGGTCACTG+TGG - chr8_2:10441702-10441721 Msa1233620:intron 55.0%
ATCAGAAGGCGGAGACCAGT+AGG + chr8_2:10442851-10442870 None:intergenic 55.0%
TGGTCTCCGCCTTCTGATAG+AGG - chr8_2:10442853-10442872 Msa1233620:intron 55.0%
! GGATGGAACAGGAGAGCGCA+AGG - chr8_2:10440687-10440706 Msa1233620:CDS 60.0%
!! TGCCGGTTCTTCCCCTTCGA+GGG + chr8_2:10440819-10440838 None:intergenic 60.0%
CTAAGCAGGCCACACCCTCA+AGG - chr8_2:10442022-10442041 Msa1233620:CDS 60.0%
GAGGATCCAGCCTCTCCTAC+TGG - chr8_2:10442833-10442852 Msa1233620:intron 60.0%
AAGGCGGAGACCAGTAGGAG+AGG + chr8_2:10442846-10442865 None:intergenic 60.0%
!! CTGCCGGTTCTTCCCCTTCG+AGG + chr8_2:10440820-10440839 None:intergenic 65.0%
GTGCGCTCTCTCTACGAGGG+TGG - chr8_2:10441176-10441195 Msa1233620:intron 65.0%
GGGTGGGGTCACTGTGGAAC+AGG - chr8_2:10441708-10441727 Msa1233620:intron 65.0%
CGGAGACCAGTAGGAGAGGC+TGG + chr8_2:10442842-10442861 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 10438362 10443826 10438362 ID=Msa1233620;Name=Msa1233620
chr8_2 mRNA 10438362 10443826 10438362 ID=Msa1233620-mRNA-1;Parent=Msa1233620;Name=Msa1233620-mRNA-1;_AED=0.06;_eAED=0.06;_QI=153|1|1|1|0.88|0.8|10|229|868
chr8_2 exon 10438362 10438382 10438362 ID=Msa1233620-mRNA-1:exon:4102;Parent=Msa1233620-mRNA-1
chr8_2 exon 10438404 10439368 10438404 ID=Msa1233620-mRNA-1:exon:4101;Parent=Msa1233620-mRNA-1
chr8_2 exon 10439666 10439929 10439666 ID=Msa1233620-mRNA-1:exon:4100;Parent=Msa1233620-mRNA-1
chr8_2 exon 10440015 10440319 10440015 ID=Msa1233620-mRNA-1:exon:4099;Parent=Msa1233620-mRNA-1
chr8_2 exon 10440459 10440566 10440459 ID=Msa1233620-mRNA-1:exon:4098;Parent=Msa1233620-mRNA-1
chr8_2 exon 10440686 10440771 10440686 ID=Msa1233620-mRNA-1:exon:4097;Parent=Msa1233620-mRNA-1
chr8_2 exon 10440874 10441194 10440874 ID=Msa1233620-mRNA-1:exon:4096;Parent=Msa1233620-mRNA-1
chr8_2 exon 10441332 10441572 10441332 ID=Msa1233620-mRNA-1:exon:4095;Parent=Msa1233620-mRNA-1
chr8_2 exon 10441795 10442081 10441795 ID=Msa1233620-mRNA-1:exon:4094;Parent=Msa1233620-mRNA-1
chr8_2 exon 10443436 10443826 10443436 ID=Msa1233620-mRNA-1:exon:4093;Parent=Msa1233620-mRNA-1
chr8_2 five_prime_UTR 10443674 10443826 10443674 ID=Msa1233620-mRNA-1:five_prime_utr;Parent=Msa1233620-mRNA-1
chr8_2 CDS 10443436 10443673 10443436 ID=Msa1233620-mRNA-1:cds;Parent=Msa1233620-mRNA-1
chr8_2 CDS 10441795 10442081 10441795 ID=Msa1233620-mRNA-1:cds;Parent=Msa1233620-mRNA-1
chr8_2 CDS 10441332 10441572 10441332 ID=Msa1233620-mRNA-1:cds;Parent=Msa1233620-mRNA-1
chr8_2 CDS 10440874 10441194 10440874 ID=Msa1233620-mRNA-1:cds;Parent=Msa1233620-mRNA-1
chr8_2 CDS 10440686 10440771 10440686 ID=Msa1233620-mRNA-1:cds;Parent=Msa1233620-mRNA-1
chr8_2 CDS 10440459 10440566 10440459 ID=Msa1233620-mRNA-1:cds;Parent=Msa1233620-mRNA-1
chr8_2 CDS 10440015 10440319 10440015 ID=Msa1233620-mRNA-1:cds;Parent=Msa1233620-mRNA-1
chr8_2 CDS 10439666 10439929 10439666 ID=Msa1233620-mRNA-1:cds;Parent=Msa1233620-mRNA-1
chr8_2 CDS 10438612 10439368 10438612 ID=Msa1233620-mRNA-1:cds;Parent=Msa1233620-mRNA-1
chr8_2 three_prime_UTR 10438404 10438611 10438404 ID=Msa1233620-mRNA-1:three_prime_utr;Parent=Msa1233620-mRNA-1
chr8_2 three_prime_UTR 10438362 10438382 10438362 ID=Msa1233620-mRNA-1:three_prime_utr;Parent=Msa1233620-mRNA-1
Gene Sequence

>Msa1233620

ATGACTTCATTGGTGAAAGGTCTCTTTGATAAGCACGAAAAGGTGAAGGGAACTGTGGTGTTGATGCAAAAGAATGTGTTAGACATCAACGAACTCACTGCAGCTCAAAGCCCTACTGGTATCATTGGTGGTGCCATAGGTGCTATTGGTGATGTTGCTGGCAATATACTTGACACTGCCACTTCCTTCTTGGGCCGTTCTATAGCTCTCAAGTTGATTAGTGCTACAAGTGCTGATGGAACTGGAAAAGGAAAAGTTGGACAGGAAACATTTCTGAAAGGTATTCTTACCTCCATACCAACATTGGGAGACAAACAAAATGCTTTCAGTATTAATTTTGAATGGGACAGTGACATGGGAATTCCTGGAGCTTTTTACATCAAGAATTATATGCAAGGTGAATTCTTCCTTGTGAGTTTGACACTTGAAGATATTCCAAACCATGGATCCATCCACTTTGTTTGCAACTCATGGATTTACAATTCTAAAAAGTACAAAACCGACCGCATCTTCTTTGCCAACAAGACATACCTTCCAAGTGAAACACCGGCTCCATTAGTGTACTATAGACAAGAAGAGTTGAAGACTTTAAGAGGGGATGGAACAGGAGAGCGCAAGGAATGGGAAAGAATATATGATTATGATGTCTACAATGATTTGGGTGAGCCTGACTCGAAACCTCAATTGGCTCGTCAAATTCTTGGGGGATCGAGCGATTTCCCTTACCCTCGAAGGGGAAGAACCGGCAGAAGAAAAACTAAAACAGATCCTAACAGTGAGACTCGAAGTCCCACTGTTTACCTTCCAAGAGATGAATCATTTGGACACACAAAGTCATCAGACTTTCTTGTTTACATACTCAAATCAGCATCTCAGAATGTCATACCTCAATTGAGATCTGTAGTTACGTTACAACTCAATAACCCCGAGTTTAACACCTTTCAAGATGTGCGCTCTCTCTACGAGGGTGGAATTAAGCTTCCTACTGATGTACTAAGCCAGATTAGTCCAATACCATTGTTCAAGGAACTTTTCCGATCTGATGGTGAACAAGCACTTAAGTTTCCACCACCAAAAGTGATTCAAGTGGACCATTCTGCATGGCAGACTGATGAGGAATTTGCAAGGGAGATGATTGCTGGGGTGAATCCACACATCATCAAAAAACTCTCGGAGTTTCCACCAAAGAGCAAGCTAGATAGCCAAAAATTTGGTGATAACACCAGCACCATAACTAAAGAAAACTTGGAGCCAAACATGGGTGGGGTCACTGTGGAACAGGCTATCCAAAACAATAGATTGTACATACTTGATCACCACGACCCGCTCTTTCCATATTTGAGGAAAATAAATGCAAGTGAGACAAAGGCCTATGCTACTAGAACCATTCTTTTCTTGCAAGATAATGGAACTTTGAAGCCATTGGCCATTGAACTAAGCAGGCCACACCCTCAAGGTGATAGTTTTGGTCCTGTTAGCAATGTTTACTTGCCCGCAAGTGAAGGTGTTGAAGCATCAGTTTGGCTCCTTGCCAAGGCTTTTGTTGTTGTAAATGACTCCTGCTATCACCAACTTGTCAGCCATTGGTTGAATACCCATGCTGTTGTTGAGCCATTCGTCATAGCAACAAATAGGCATCTTAGTGTGGTTCACCCTATTCATAAACTCTTGCTTCCACATTATCGTGACACAATGAACATAAATGCACTTGCACGAAACGTATTGGTCAATGCAGAGGGTATTATTGAATCAACTTTCTTGTGGGGAAATTATGCTTTGGAAATGTCTGCTGTTGTTTACAAGGATTGGAATTTCATTGAGCAAGGGCTGCCTAATGATCTAATCAAAAGAGGAGTAGCTGTTGAGGATCCAGCCTCTCCTACTGGTCTCCGCCTTCTGATAGAGGATTATCCTTATGCTTCTGATGGACTAGAAATATGGGCTGCCATTAAGTCATGGGTTGGTGAATATGTGAATTTCTATTACAAGTCTGATGCAGCTATTGCACAAGATTCTGAACTCCAAGCATTCTGGAAAGAACTTGTAGAGGTTGGTCATGGTGACTTAAAGAATGCCACATGGTGGTTTAAGATGCAAACTCGTGAGGAGTTGATCGAAGCTTCCACCATCCTTATATGGATTGCTTCAGCACTTCATGCAGCTGTTAACTTTGGACAATATCCGTATGGAGGATATATCCTTAACCGACCAACAAAAAGTAGAAGATTCATGCCTGAGAAAGGATCACCTGAGTATGATGAGCTTGCTAAGGACTACCAGAAGACCTATTTGAGGACAATCACACCAAAGAATGATACTCTTACTGACTTGACCATTATAGAGGTCTTGTCAAGGCATGCTTCTGATGAGCAATACCTTGGAGATAGAATTGAAGGTGACAATTGGACTTCTGATACACAGCCAAAAGAAGCCTTCAAGAGGTTTGGAAAGAAGTTGGCTGAAATTGAGCAAAAACTCACTCAAAGGAACAATGATGAGACATTGAGGAATCGGTATGGACCTGTGAAGATGCCATACACTCTGCTTTACCCTTCTAGCGAGGAAGGATTGACTTGCAGAGGCATTCCCAACAGTATCTCCATCTAA
Protein sequence

>Msa1233620

MTSLVKGLFDKHEKVKGTVVLMQKNVLDINELTAAQSPTGIIGGAIGAIGDVAGNILDTATSFLGRSIALKLISATSADGTGKGKVGQETFLKGILTSIPTLGDKQNAFSINFEWDSDMGIPGAFYIKNYMQGEFFLVSLTLEDIPNHGSIHFVCNSWIYNSKKYKTDRIFFANKTYLPSETPAPLVYYRQEELKTLRGDGTGERKEWERIYDYDVYNDLGEPDSKPQLARQILGGSSDFPYPRRGRTGRRKTKTDPNSETRSPTVYLPRDESFGHTKSSDFLVYILKSASQNVIPQLRSVVTLQLNNPEFNTFQDVRSLYEGGIKLPTDVLSQISPIPLFKELFRSDGEQALKFPPPKVIQVDHSAWQTDEEFAREMIAGVNPHIIKKLSEFPPKSKLDSQKFGDNTSTITKENLEPNMGGVTVEQAIQNNRLYILDHHDPLFPYLRKINASETKAYATRTILFLQDNGTLKPLAIELSRPHPQGDSFGPVSNVYLPASEGVEASVWLLAKAFVVVNDSCYHQLVSHWLNTHAVVEPFVIATNRHLSVVHPIHKLLLPHYRDTMNINALARNVLVNAEGIIESTFLWGNYALEMSAVVYKDWNFIEQGLPNDLIKRGVAVEDPASPTGLRLLIEDYPYASDGLEIWAAIKSWVGEYVNFYYKSDAAIAQDSELQAFWKELVEVGHGDLKNATWWFKMQTREELIEASTILIWIASALHAAVNFGQYPYGGYILNRPTKSRRFMPEKGSPEYDELAKDYQKTYLRTITPKNDTLTDLTIIEVLSRHASDEQYLGDRIEGDNWTSDTQPKEAFKRFGKKLAEIEQKLTQRNNDETLRNRYGPVKMPYTLLYPSSEEGLTCRGIPNSISI*