AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1314080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1314080 MtrunA17_Chr8g0343021 98.611 864 12 0 1 864 1 864 0.0 1758
Msa1314080 MtrunA17_Chr8g0343031 90.983 865 77 1 1 864 1 865 0.0 1617
Msa1314080 MtrunA17_Chr5g0406871 83.968 867 136 2 1 864 1 867 0.0 1532
Msa1314080 MtrunA17_Chr2g0329901 73.472 867 215 6 3 864 7 863 0.0 1316
Msa1314080 MtrunA17_Chr2g0329911 71.296 864 237 3 3 864 7 861 0.0 1290
Msa1314080 MtrunA17_Chr8g0342881 69.697 858 247 5 10 864 9 856 0.0 1261
Msa1314080 MtrunA17_Chr3g0120071 67.396 868 269 7 1 864 1 858 0.0 1196
Msa1314080 MtrunA17_Chr8g0342971 64.401 868 299 8 3 864 7 870 0.0 1177
Msa1314080 MtrunA17_Chr8g0342951 65.783 868 285 7 3 864 7 868 0.0 1177
Msa1314080 MtrunA17_Chr8g0342921 63.815 865 306 6 4 864 8 869 0.0 1155
Msa1314080 MtrunA17_Chr8g0342891 62.587 866 308 6 5 864 6 861 0.0 1155
Msa1314080 MtrunA17_Chr8g0344211 63.006 865 314 5 3 864 7 868 0.0 1153
Msa1314080 MtrunA17_Chr8g0343011 63.552 867 307 4 1 864 5 865 0.0 1149
Msa1314080 MtrunA17_Chr8g0342931 65.113 751 258 4 117 864 1 750 0.0 1046
Msa1314080 MtrunA17_Chr8g0342901 58.228 869 308 10 5 864 6 828 0.0 1033
Msa1314080 MtrunA17_Chr1g0191921 57.949 868 327 8 9 864 17 858 0.0 1011
Msa1314080 MtrunA17_Chr7g0272791 55.932 885 344 11 1 864 8 867 0.0 993
Msa1314080 MtrunA17_Chr1g0205611 56.357 873 337 10 11 864 9 856 0.0 992
Msa1314080 MtrunA17_Chr8g0343001 55.349 860 318 12 10 864 9 807 0.0 938
Msa1314080 MtrunA17_Chr8g0342991 55.220 862 316 14 10 864 9 807 0.0 929
Msa1314080 MtrunA17_Chr8g0342981 54.202 821 325 13 63 864 35 823 0.0 873
Msa1314080 MtrunA17_Chr8g0344201 47.080 822 414 11 55 863 113 926 0.0 745
Msa1314080 MtrunA17_Chr8g0377101 44.311 835 435 15 49 864 93 916 0.0 687
Msa1314080 MtrunA17_Chr3g0118651 42.515 835 444 14 45 864 90 903 0.0 667
Msa1314080 MtrunA17_Chr8g0338451 42.144 821 428 18 54 845 46 848 0.0 645
Msa1314080 MtrunA17_Chr3g0118641 40.980 837 454 14 45 864 89 902 0.0 642
Msa1314080 MtrunA17_Chr4g0033171 47.673 709 355 10 166 864 23 725 0.0 642
Msa1314080 MtrunA17_Chr4g0047281 40.114 875 469 16 7 863 57 894 0.0 634
Msa1314080 MtrunA17_Chr3g0118621 41.417 833 463 13 45 864 45 865 0.0 609
Msa1314080 MtrunA17_Chr8g0344241 64.557 395 139 1 471 864 67 461 0.0 546
Msa1314080 MtrunA17_Chr8g0344241 45.679 81 37 3 281 357 1 78 2.56e-11 67.0
Msa1314080 MtrunA17_Chr6g0471951 40.891 516 257 8 320 829 11 484 8.57e-134 408
Msa1314080 MtrunA17_Chr7g0218231 59.829 117 46 1 519 634 16 132 7.94e-41 146
Msa1314080 MtrunA17_Chr6g0468081 56.180 89 38 1 547 634 1 89 1.91e-25 101
Msa1314080 MtrunA17_Chr3g0137991 41.270 126 55 3 741 864 1 109 1.60e-19 84.7
Msa1314080 MtrunA17_Chr7g0272781 50.000 62 31 0 757 818 8 69 4.57e-15 71.6
Msa1314080 MtrunA17_Chr2g0277191 50.909 55 27 0 738 792 58 112 1.28e-14 71.2
Msa1314080 MtrunA17_Chr4g0047271 40.659 91 53 1 774 863 1 91 3.48e-14 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1314080 AT1G55020.1 56.667 870 334 10 9 864 19 859 0.0 1000
Msa1314080 AT3G22400.1 53.303 878 362 11 10 864 34 886 0.0 958
Msa1314080 AT1G72520.1 45.985 822 423 11 55 864 114 926 0.0 726
Msa1314080 AT1G17420.1 46.135 815 417 12 62 864 115 919 0.0 723
Msa1314080 AT3G45140.1 44.080 853 435 19 28 864 70 896 0.0 675
Msa1314080 AT3G45140.2 46.405 765 380 15 116 864 4 754 0.0 661
Msa1314080 AT1G67560.1 44.350 823 422 15 62 864 111 917 0.0 652

Find 233 sgRNAs with CRISPR-Local

Find 423 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGAATATGATGCTAATTT+TGG 0.100125 8_4:-12607845 Msa1314080:CDS
TACAACATCACTGCTGTATT+TGG 0.113928 8_4:-12604356 Msa1314080:three_prime_UTR
TGATGCATTCATGCCATATT+TGG 0.131415 8_4:-12606229 Msa1314080:CDS
AATCATCACATTGATGTTAT+TGG 0.174734 8_4:+12604423 None:intergenic
TCTTCTCTAAAGTGATTTAA+TGG 0.196129 8_4:+12607485 None:intergenic
TATATAAAGATTCATTTAAT+TGG 0.196169 8_4:-12604204 Msa1314080:three_prime_UTR
CTTCTGCAGTTTACAAGAAT+TGG 0.212735 8_4:-12605605 Msa1314080:CDS
GGGAATAAAAGCTTATAAAT+TGG 0.214154 8_4:+12605738 None:intergenic
GTTCCAAGAGATGAAAATTT+TGG 0.231662 8_4:-12607147 Msa1314080:CDS
AAATTTATCCTCTCCAAATA+TGG 0.251076 8_4:+12606216 None:intergenic
AATCTTGCTCCATTATTATA+TGG 0.253046 8_4:-12604957 Msa1314080:CDS
CCGTTGACGGACTAGAAATA+TGG 0.275193 8_4:-12605155 Msa1314080:CDS
TGGAATACTGATGAAGAATT+TGG 0.277138 8_4:-12606639 Msa1314080:CDS
TCTTGAACAGTTTGCATCTT+AGG 0.280001 8_4:+12604988 None:intergenic
GAAGAAATCTCAATGGAATT+TGG 0.280136 8_4:+12605624 None:intergenic
CTAGTTTGCTTCCAAACTTT+TGG 0.283941 8_4:+12604641 None:intergenic
GAGAGAATAATAACAAGTTT+TGG 0.287246 8_4:-12604693 Msa1314080:CDS
AGAAATATGGGATGCTATTA+AGG 0.290191 8_4:-12605142 Msa1314080:CDS
TACTAATTGTTGGACGGTTC+AGG 0.290734 8_4:+12604875 None:intergenic
TTTGTGGAACAGGCACTTAA+TGG 0.292803 8_4:-12606279 Msa1314080:intron
ATTTATTGTGTCACGGTAAT+GGG 0.293937 8_4:+12605716 None:intergenic
GGGCTGGCAAGGGGCTGATT+TGG 0.296037 8_4:+12606947 None:intergenic
GACTCCTCCGATCAAATTTC+CGG 0.296832 8_4:+12610070 None:intergenic
ACATTAGATGCCACTGTCTA+TGG 0.313484 8_4:-12606451 Msa1314080:CDS
CTTTGCTTTCAGCACCATAT+TGG 0.318853 8_4:+12606091 None:intergenic
CAGCCCCTTGCCAGCCCTTA+AGG 0.319271 8_4:-12606941 Msa1314080:CDS
CGAAGCTATCGAACTCATTC+GGG 0.329624 8_4:+12607025 None:intergenic
GTTCAAGCCTTCCAAAAGTT+TGG 0.333897 8_4:-12604652 Msa1314080:CDS
GATACTGCCACTGCCTTCTT+AGG 0.334563 8_4:-12610023 Msa1314080:CDS
ATAACATCAATGTGATGATT+AGG 0.336707 8_4:-12604420 Msa1314080:three_prime_UTR
TTCACCATCTCATCGTATTC+CGG 0.336776 8_4:+12604826 None:intergenic
TCATCGTATTCCGGAGTTCC+TGG 0.337127 8_4:+12604835 None:intergenic
CTTGAGGTGGTGGAAACTTA+AGG 0.348578 8_4:+12606890 None:intergenic
CTCATCTGTTGGGTAGTATA+AGG 0.350348 8_4:+12605098 None:intergenic
AAACTTAATTCGATGGCTAA+TGG 0.354943 8_4:+12606132 None:intergenic
CACTCAAATGGGGTCCAATA+TGG 0.361963 8_4:-12606105 Msa1314080:CDS
AACTTCGGACAATATCCTTA+TGG 0.364413 8_4:-12604907 Msa1314080:CDS
CGGTGCGGAGGATTTCCTTA+AGG 0.370288 8_4:+12606926 None:intergenic
ACACCCGGTTTCTCACTCTT+AGG 0.374698 8_4:+12607177 None:intergenic
GGTGCGGAGGATTTCCTTAA+GGG 0.375826 8_4:+12606927 None:intergenic
CCACCACCTCAAGTAATTAG+AGG 0.377836 8_4:-12606880 Msa1314080:intron
TCTACCACAGTTACCAACTT+TGG 0.386958 8_4:-12607897 Msa1314080:CDS
TATTTATTGTGTCACGGTAA+TGG 0.387187 8_4:+12605715 None:intergenic
TTGAGGTGGTGGAAACTTAA+GGG 0.387785 8_4:+12606891 None:intergenic
GGAATAAAAGCTTATAAATT+GGG 0.391404 8_4:+12605739 None:intergenic
TGAAGAAGACGAATCACATT+AGG 0.393551 8_4:+12606591 None:intergenic
ATTTGTACTGCCTCATCTGT+TGG 0.395789 8_4:+12605087 None:intergenic
AAATTCATAGCTTACATCAT+TGG 0.395891 8_4:+12607664 None:intergenic
CTACCACAGTTACCAACTTT+GGG 0.399809 8_4:-12607896 Msa1314080:CDS
TAAGTTTGCCACACTCAAAT+GGG 0.403015 8_4:-12606116 Msa1314080:CDS
GCCCTTGTTCGTCCAATCCT+TGG 0.403862 8_4:-12607356 Msa1314080:CDS
TCTAGTCCGTCAACGGCATA+AGG 0.404548 8_4:+12605162 None:intergenic
TCAACAAGGGTTTGGTACTT+TGG 0.409673 8_4:+12604769 None:intergenic
TTCAATTTGATTGTAACTCA+TGG 0.409858 8_4:-12607730 Msa1314080:CDS
ATAAATCTTCTACTAATTGT+TGG 0.413529 8_4:+12604865 None:intergenic
TTCTGCAGTTTACAAGAATT+GGG 0.413547 8_4:-12605604 Msa1314080:CDS
ATCTTGTTCTTGCAAGATGA+TGG 0.413720 8_4:-12606165 Msa1314080:CDS
TTTGTACTGCCTCATCTGTT+GGG 0.415065 8_4:+12605088 None:intergenic
GCCTTTACCGATGGACGTTA+TGG 0.415758 8_4:+12610109 None:intergenic
TCGAAGCTATCGAACTCATT+CGG 0.424592 8_4:+12607024 None:intergenic
CTATTTGTTGCTATGATGAA+TGG 0.428310 8_4:+12605780 None:intergenic
ACAACATCACTGCTGTATTT+GGG 0.428770 8_4:-12604355 Msa1314080:three_prime_UTR
CTCCTTCGTTCGAGTGAAGA+AGG 0.429415 8_4:-12604532 Msa1314080:CDS
ACAAGGGCGTCGCCACGATC+TGG 0.433037 8_4:+12607371 None:intergenic
AGATCCTAAGAGTGAGAAAC+CGG 0.434252 8_4:-12607181 Msa1314080:CDS
TAACCCTGCGCGGGTAGGGA+TGG 0.434485 8_4:+12607321 None:intergenic
TTAAGTTTGCCACACTCAAA+TGG 0.434747 8_4:-12606117 Msa1314080:CDS
TCATCAGACTTCCTTATGTA+TGG 0.435382 8_4:-12607114 Msa1314080:CDS
CACGGTTAGGAATATCTTCA+AGG 0.435842 8_4:+12607759 None:intergenic
ACTAGATTCATTGTTCCTCT+TGG 0.437516 8_4:+12604597 None:intergenic
ATGACTTTATTCCATACATA+AGG 0.441922 8_4:+12607103 None:intergenic
AATTGAACACTTCCACGGTT+AGG 0.444733 8_4:+12607746 None:intergenic
AACCCTGCGCGGGTAGGGAT+GGG 0.445806 8_4:+12607322 None:intergenic
TTTCTTATGTAAAATGCTCC+AGG 0.445840 8_4:+12607818 None:intergenic
TACATGGTGCAAAGCAATAG+TGG 0.452805 8_4:+12604296 None:intergenic
TTCTAAATAGAGATACTGTT+GGG 0.454464 8_4:+12604490 None:intergenic
CGAAGGCCATGAGGGGAAGA+TGG 0.454773 8_4:+12605204 None:intergenic
CTAAAGTGATTTAATGGAGC+TGG 0.455417 8_4:+12607491 None:intergenic
AGAAGCTGTCCATATAATAA+TGG 0.456653 8_4:+12604948 None:intergenic
AGCAAACTAGCTGAAATTGA+AGG 0.459113 8_4:-12604628 Msa1314080:CDS
ATTTGGCTAATTATATCTGT+TGG 0.462480 8_4:+12606964 None:intergenic
CACTTTACTATATGTGAAAG+TGG 0.463123 8_4:+12604271 None:intergenic
TCAACTGCATAGAGACATTA+CGG 0.464666 8_4:+12610000 None:intergenic
GGAGGAGTCACCAGCATTGT+TGG 0.465982 8_4:-12610056 Msa1314080:CDS
AAGGTGTCGAAAGTACAATT+TGG 0.471544 8_4:-12606050 Msa1314080:CDS
AATTAGTAGAAGATTTATTC+CGG 0.472215 8_4:-12604860 Msa1314080:CDS
CAGAAAGATCAACAAGGGTT+TGG 0.472356 8_4:+12604761 None:intergenic
GTGGAAGGAAGCTGTAGAAA+AGG 0.472990 8_4:-12605043 Msa1314080:CDS
GATTTCCTTAAGGGCTGGCA+AGG 0.476480 8_4:+12606936 None:intergenic
TCTTGTCTTGCTCCCAAAGT+TGG 0.477942 8_4:+12607884 None:intergenic
GGTAGAAAACCAACTAGAAA+AGG 0.479857 8_4:-12607293 Msa1314080:intron
TTTGGAAGAGAGATGCTTGC+TGG 0.480541 8_4:-12606621 Msa1314080:CDS
CTTTCGACACCTTCGTGTGC+AGG 0.481903 8_4:+12606060 None:intergenic
GAACACTTAGAGACTAATCT+TGG 0.485357 8_4:-12606403 Msa1314080:CDS
CGAAAGTACAATTTGGATGT+TGG 0.485918 8_4:-12606043 Msa1314080:CDS
TAGACACTGAAATTCAGAAA+TGG 0.486341 8_4:-12605065 Msa1314080:CDS
AATCTAAGAGGAGATGGAAC+TGG 0.486945 8_4:-12607452 Msa1314080:CDS
TTGCAGAATCTAAGAGGAGA+TGG 0.488557 8_4:-12607458 Msa1314080:CDS
AACTGGAGAACGCAAAGAAT+GGG 0.488937 8_4:-12607435 Msa1314080:CDS
GGCGGTGTCCTCGACGCTGC+CGG 0.489241 8_4:-12610089 Msa1314080:CDS
GAACTGGAGAACGCAAAGAA+TGG 0.490615 8_4:-12607436 Msa1314080:CDS
ATCTCAATGGAATTTGGTCC+CGG 0.490702 8_4:+12605630 None:intergenic
TATGATGTTTATAATGATCT+CGG 0.490765 8_4:-12607398 Msa1314080:CDS
CGGAGGATTTCCTTAAGGGC+TGG 0.493473 8_4:+12606931 None:intergenic
GTTGAGTAGAGAAAGAAGCT+TGG 0.493562 8_4:+12610261 None:intergenic
TGGCCTTCGTCTTGTGATAG+AGG 0.494640 8_4:-12605190 Msa1314080:CDS
CGTGACACAATAAATATCAA+TGG 0.495773 8_4:-12605708 Msa1314080:CDS
GCGTCCGATGAAGTGTATCT+TGG 0.497267 8_4:-12604715 Msa1314080:CDS
AGAAGATTTATTCCGGAGCC+AGG 0.498580 8_4:-12604853 Msa1314080:CDS
CGTTGACGGACTAGAAATAT+GGG 0.503613 8_4:-12605154 Msa1314080:CDS
TTTCTAAATAGAGATACTGT+TGG 0.503804 8_4:+12604489 None:intergenic
GAAGAGTTGCAGAATCTAAG+AGG 0.504427 8_4:-12607464 Msa1314080:CDS
GAGGATCCATCTTCCCCTCA+TGG 0.504857 8_4:-12605210 Msa1314080:CDS
TCAATTTGATTGTAACTCAT+GGG 0.505064 8_4:-12607729 Msa1314080:CDS
TACCTCTTGATAAGATCAGC+TGG 0.505206 8_4:+12605561 None:intergenic
AAAGAGTTAGCAAACATGTT+GGG 0.505875 8_4:-12610203 Msa1314080:exon
GCACCCATCCCTACCCGCGC+AGG 0.508969 8_4:-12607325 Msa1314080:CDS
CTTCTAACCCTGCGCGGGTA+GGG 0.513092 8_4:+12607317 None:intergenic
ATCATCAACTCATGAGCCAT+TGG 0.514587 8_4:-12605987 Msa1314080:intron
GATGGTGAAAAGTCCTCAAA+AGG 0.515594 8_4:-12604812 Msa1314080:CDS
TTCAGGATATATCCTCCATA+AGG 0.516837 8_4:+12604892 None:intergenic
TGTAGCAAGTGGAAAGGGAC+TGG 0.517168 8_4:-12607948 Msa1314080:intron
GCCATAACGTCCATCGGTAA+AGG 0.517311 8_4:-12610110 Msa1314080:CDS
AAAGTGTAGGGCAATTGCAC+TGG 0.518841 8_4:+12604556 None:intergenic
GACTACCCTTATGCCGTTGA+CGG 0.520190 8_4:-12605168 Msa1314080:CDS
CTTGTTCGTCCAATCCTTGG+AGG 0.520793 8_4:-12607353 Msa1314080:CDS
CTAGTCCGTCAACGGCATAA+GGG 0.522559 8_4:+12605163 None:intergenic
GTGCTAGATCCTCCAAGGAT+TGG 0.523237 8_4:+12607344 None:intergenic
GTAGGGCAATTGCACTGGTC+CGG 0.524708 8_4:+12604561 None:intergenic
ATTTCCTTAAGGGCTGGCAA+GGG 0.524741 8_4:+12606937 None:intergenic
AACAACTCCACCAACAATGC+TGG 0.526326 8_4:+12610046 None:intergenic
ATCTTCTACTAATTGTTGGA+CGG 0.527713 8_4:+12604869 None:intergenic
GATGCAAACTGTTCAAGACT+TGG 0.529793 8_4:-12604983 Msa1314080:CDS
AATCAAATTGAACACTTCCA+CGG 0.532254 8_4:+12607741 None:intergenic
CCTCTAATTACTTGAGGTGG+TGG 0.533059 8_4:+12606880 None:intergenic
GAAGAAGGTTTAACATTCAG+AGG 0.534950 8_4:-12604517 Msa1314080:CDS
CTCCAAGGATTGGACGAACA+AGG 0.536054 8_4:+12607354 None:intergenic
CATTGATATTTATTGTGTCA+CGG 0.537197 8_4:+12605709 None:intergenic
TACAATTTGGATGTTGGCAA+AGG 0.537477 8_4:-12606037 Msa1314080:CDS
AACTGCAGAAGAAATCTCAA+TGG 0.538818 8_4:+12605617 None:intergenic
TCTTGTTCTTGCAAGATGAT+GGG 0.539913 8_4:-12606164 Msa1314080:CDS
AGTATAAGGATACATAGTCT+TGG 0.540828 8_4:+12605112 None:intergenic
GTGCAAAAGCTTACGCTACA+AGG 0.541604 8_4:-12606191 Msa1314080:CDS
ATGTTGGGCATCTTTGACAA+GGG 0.541871 8_4:-12610188 Msa1314080:CDS
AACCTTCTTCACTCGAACGA+AGG 0.544693 8_4:+12604530 None:intergenic
TATTCCGGAGCCAGGAACTC+CGG 0.546745 8_4:-12604845 Msa1314080:CDS
AGAGACATTACGGCCTAAGA+AGG 0.547564 8_4:+12610010 None:intergenic
ATGCATCATGGTAATCTAAG+AGG 0.548431 8_4:+12606244 None:intergenic
TTCTTATGTAAAATGCTCCA+GGG 0.549723 8_4:+12607819 None:intergenic
GAACGAAGGAGCAAAGTGTA+GGG 0.553812 8_4:+12604544 None:intergenic
AATGGAGCTGGTGTTTGACT+TGG 0.553916 8_4:+12607503 None:intergenic
GCAAGTGGAAAGGGACTGGT+TGG 0.555695 8_4:-12607944 Msa1314080:CDS
AAAAGAGTTAGCAAACATGT+TGG 0.558912 8_4:-12610204 Msa1314080:exon
TACCACTTCTAACCCTGCGC+GGG 0.559995 8_4:+12607312 None:intergenic
TGGAAAGGGACTGGTTGGAA+AGG 0.561560 8_4:-12607939 Msa1314080:CDS
GTTGAATACTCATGCAGTGA+TGG 0.563079 8_4:-12605805 Msa1314080:CDS
ACACAGAGGATTAGCTGTTG+AGG 0.564066 8_4:-12605229 Msa1314080:intron
CATGTTGGGCATCTTTGACA+AGG 0.564613 8_4:-12610189 Msa1314080:CDS
CTTAAGGGCTTGTTCACCAT+CGG 0.566427 8_4:+12606906 None:intergenic
AAGGAAATCCTCCGCACCGA+TGG 0.567227 8_4:-12606922 Msa1314080:CDS
ATGGGATGCTATTAAGGCAT+GGG 0.568340 8_4:-12605136 Msa1314080:CDS
AAAATTACAGATTGTAACAA+AGG 0.568552 8_4:+12607063 None:intergenic
TATTCCGGAGTTCCTGGCTC+CGG 0.569747 8_4:+12604841 None:intergenic
TTTCCTTAAGGGCTGGCAAG+GGG 0.571197 8_4:+12606938 None:intergenic
CTTCATGCAGCTGTTAACTT+CGG 0.574032 8_4:-12604922 Msa1314080:CDS
ACTTCTAACCCTGCGCGGGT+AGG 0.574571 8_4:+12607316 None:intergenic
GAGAACGCAAAGAATGGGAT+AGG 0.576002 8_4:-12607430 Msa1314080:CDS
TGGAAGGAAGCTGTAGAAAA+GGG 0.576005 8_4:-12605042 Msa1314080:CDS
GTGTGGCAAACTTAATTCGA+TGG 0.576956 8_4:+12606125 None:intergenic
CCATATTTCTAGTCCGTCAA+CGG 0.578366 8_4:+12605155 None:intergenic
GGAGTCACCAGCATTGTTGG+TGG 0.578759 8_4:-12610053 Msa1314080:CDS
ATTAGTGCTACAAAGACTGA+TGG 0.579932 8_4:-12609978 Msa1314080:intron
CTTGTTCACCATCGGTGCGG+AGG 0.580219 8_4:+12606914 None:intergenic
TTTATTGTGTCACGGTAATG+GGG 0.581682 8_4:+12605717 None:intergenic
CTCTCCAAGATACACTTCAT+CGG 0.582621 8_4:+12604711 None:intergenic
CGAACGAAGGAGCAAAGTGT+AGG 0.584185 8_4:+12604543 None:intergenic
GAGGACACCGCCTTTACCGA+TGG 0.588131 8_4:+12610100 None:intergenic
TGGTGATATCACAGTAGAAG+AGG 0.588913 8_4:-12606383 Msa1314080:intron
ACGGTTAGGAATATCTTCAA+GGG 0.589822 8_4:+12607760 None:intergenic
GACGCTGCCGGAAATTTGAT+CGG 0.595337 8_4:-12610077 Msa1314080:CDS
ACACTGAAATTCAGAAATGG+TGG 0.595367 8_4:-12605062 Msa1314080:CDS
TATGGGATGCTATTAAGGCA+TGG 0.595717 8_4:-12605137 Msa1314080:CDS
TCAAATTTCCGGCAGCGTCG+AGG 0.595821 8_4:+12610081 None:intergenic
GCAAACTAGCTGAAATTGAA+GGG 0.596882 8_4:-12604627 Msa1314080:CDS
GTGTAGTTAGCAAGTCTGCA+TGG 0.598393 8_4:-12606659 Msa1314080:intron
AACTCCGGAATACGATGAGA+TGG 0.600020 8_4:-12604830 Msa1314080:CDS
CATTCATGCCATATTTGGAG+AGG 0.604180 8_4:-12606224 Msa1314080:CDS
AATATGGCATGAATGCATCA+TGG 0.606974 8_4:+12606232 None:intergenic
CTTGGAACATAAATCACACC+CGG 0.607189 8_4:+12607162 None:intergenic
GAATATCTTCAAGGGTCACA+CGG 0.608777 8_4:+12607768 None:intergenic
TGAAATTCAGAAATGGTGGA+AGG 0.610837 8_4:-12605058 Msa1314080:CDS
CAAGCTCTCATCAATGCTGA+CGG 0.612482 8_4:-12605675 Msa1314080:CDS
TCCAAGGATTGGACGAACAA+GGG 0.614423 8_4:+12607355 None:intergenic
CAATCACAGAAAGATCAACA+AGG 0.616597 8_4:+12604755 None:intergenic
TACCAGCTGATCTTATCAAG+AGG 0.619833 8_4:-12605563 Msa1314080:intron
CTTCAAGGGTCACACGGACA+AGG 0.620272 8_4:+12607774 None:intergenic
CACCCATCCCTACCCGCGCA+GGG 0.622764 8_4:-12607324 Msa1314080:CDS
GTTTGCATCTTAGGCCACCA+TGG 0.628665 8_4:+12604997 None:intergenic
AAAGTACCTCTAATTACTTG+AGG 0.628706 8_4:+12606874 None:intergenic
TTCAACGCCATAACGTCCAT+CGG 0.631507 8_4:-12610116 Msa1314080:CDS
TCACAAGACGAAGGCCATGA+GGG 0.633405 8_4:+12605196 None:intergenic
ATTACGGCCTAAGAAGGCAG+TGG 0.637013 8_4:+12610016 None:intergenic
TTATTGTGTCACGGTAATGG+GGG 0.638293 8_4:+12605718 None:intergenic
GATGGGTGCTAGATCCTCCA+AGG 0.639381 8_4:+12607339 None:intergenic
GCTCCCAAAGTTGGTAACTG+TGG 0.642576 8_4:+12607893 None:intergenic
GCAATTGCACTGGTCCGGTG+CGG 0.645224 8_4:+12604566 None:intergenic
TATTGGACCCCATTTGAGTG+TGG 0.645377 8_4:+12606108 None:intergenic
CTACCACTTCTAACCCTGCG+CGG 0.646220 8_4:+12607311 None:intergenic
TTCGGACAATATCCTTATGG+AGG 0.648654 8_4:-12604904 Msa1314080:CDS
ATCACAAGACGAAGGCCATG+AGG 0.648706 8_4:+12605195 None:intergenic
GTACCTCTAATTACTTGAGG+TGG 0.648845 8_4:+12606877 None:intergenic
AAGTTTGCCACACTCAAATG+GGG 0.650150 8_4:-12606115 Msa1314080:CDS
ATATGTGAAAGTGGAATACA+TGG 0.653339 8_4:+12604280 None:intergenic
CACAAGACGAAGGCCATGAG+GGG 0.654691 8_4:+12605197 None:intergenic
CTTATACTACCCAACAGATG+AGG 0.654839 8_4:-12605097 Msa1314080:CDS
GAAGCTGTAGAAAAGGGTCA+TGG 0.659592 8_4:-12605036 Msa1314080:CDS
AGATTCATTTAATTGGTACG+TGG 0.669516 8_4:-12604197 Msa1314080:three_prime_UTR
TACCCGCGCAGGGTTAGAAG+TGG 0.670924 8_4:-12607314 Msa1314080:CDS
GGGCTTGTTCACCATCGGTG+CGG 0.672585 8_4:+12606911 None:intergenic
CTTGAAGATATTCCTAACCG+TGG 0.678873 8_4:-12607758 Msa1314080:CDS
GAAGCTATCGAACTCATTCG+GGG 0.680201 8_4:+12607026 None:intergenic
AATCACAGAAAGATCAACAA+GGG 0.683243 8_4:+12604756 None:intergenic
GCTGCCGGAAATTTGATCGG+AGG 0.683387 8_4:-12610074 Msa1314080:CDS
ACTTGAAAGACAAGCCATGG+TGG 0.687448 8_4:-12605011 Msa1314080:CDS
GTGACTTGAAAGACAAGCCA+TGG 0.691001 8_4:-12605014 Msa1314080:CDS
GATCTCGGAAATCCAGATCG+TGG 0.691556 8_4:-12607383 Msa1314080:CDS
TTGAAGGGAAAATTACCAAG+AGG 0.691735 8_4:-12604612 Msa1314080:CDS
GATCCTAAGAGTGAGAAACC+GGG 0.695001 8_4:-12607180 Msa1314080:CDS
ATAACGTCCATCGGTAAAGG+CGG 0.695538 8_4:-12610107 Msa1314080:CDS
GATAGCTTCGATGAAGTGCG+CGG 0.701485 8_4:-12607012 Msa1314080:CDS
TCTAGTTTGAGAAACCGCAC+CGG 0.712219 8_4:-12604580 Msa1314080:CDS
GTATTCTTGCCTGCACACGA+AGG 0.719494 8_4:-12606069 Msa1314080:CDS
AGTCCTCTATCACAAGACGA+AGG 0.740779 8_4:+12605187 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAATTGAAGTATTATTTT+TGG + chr8_4:12604492-12604511 None:intergenic 10.0%
!!! TGAGATTTTAAATTAATATA+AGG - chr8_4:12605571-12605590 Msa1314080:CDS 10.0%
!! TAATAATAATCACTAAAAAA+GGG + chr8_4:12606345-12606364 None:intergenic 10.0%
!! TCATGTTTATAATTATTTAT+TGG - chr8_4:12606375-12606394 Msa1314080:intron 10.0%
!!! CGAAAAATAAATATTTTTAT+TGG + chr8_4:12606414-12606433 None:intergenic 10.0%
!!! TTAATTTTTTTATAGGTATA+CGG + chr8_4:12606781-12606800 None:intergenic 10.0%
!!! TGTTAGATTAATTTTTTTAT+AGG + chr8_4:12606788-12606807 None:intergenic 10.0%
!! AAATAAATTGAATTTATTAC+AGG - chr8_4:12606878-12606897 Msa1314080:intron 10.0%
!!! AAATTATTTTTTGATATAAC+AGG - chr8_4:12607921-12607940 Msa1314080:CDS 10.0%
!!! CAATTTTTTATTAATAATTG+TGG + chr8_4:12608574-12608593 None:intergenic 10.0%
!! TATATAAAGATTCATTTAAT+TGG - chr8_4:12610208-12610227 Msa1314080:exon 10.0%
!!! TATTTAACTTTATGTGTTTT+TGG - chr8_4:12604561-12604580 Msa1314080:CDS 15.0%
!!! TTTTTTGATAATTGTATTCA+CGG - chr8_4:12604682-12604701 Msa1314080:CDS 15.0%
!!! AGGAAGATAAATTATTTTAT+TGG + chr8_4:12604763-12604782 None:intergenic 15.0%
!! TAAAGAGTTAAAATTATCAT+AGG + chr8_4:12604783-12604802 None:intergenic 15.0%
!! GAAATAGTTAAAAAATATTG+AGG - chr8_4:12604955-12604974 Msa1314080:CDS 15.0%
!! TACTTATAAGATAAACTAAT+TGG + chr8_4:12604983-12605002 None:intergenic 15.0%
!!! ATTTTAATTAAAAGTGTGTT+TGG - chr8_4:12605246-12605265 Msa1314080:intron 15.0%
!!! CCTTATTTAATTAAGTTTAA+GGG + chr8_4:12605317-12605336 None:intergenic 15.0%
!!! TCCTTATTTAATTAAGTTTA+AGG + chr8_4:12605318-12605337 None:intergenic 15.0%
!!! TTTTACTATTATTAGGTTAT+AGG + chr8_4:12605498-12605517 None:intergenic 15.0%
!!! AAACAACTTTTACTATTATT+AGG + chr8_4:12605505-12605524 None:intergenic 15.0%
!! TAATAATAAATGTTGTTACA+AGG - chr8_4:12605541-12605560 Msa1314080:intron 15.0%
!! TAATATCTAACTAAACTTTA+GGG + chr8_4:12605711-12605730 None:intergenic 15.0%
!! CTAATAATAATCACTAAAAA+AGG + chr8_4:12606346-12606365 None:intergenic 15.0%
!!! GATAAATTATTTTATTGGCA+TGG + chr8_4:12604758-12604777 None:intergenic 20.0%
!!! TTCCTTATTTTTCAACATTA+AGG - chr8_4:12605067-12605086 Msa1314080:CDS 20.0%
!! AACCTTAATGTTGAAAAATA+AGG + chr8_4:12605072-12605091 None:intergenic 20.0%
!! CCCTTAAACTTAATTAAATA+AGG - chr8_4:12605314-12605333 Msa1314080:intron 20.0%
!!! TAATAGTAAAAGTTGTTTCA+AGG - chr8_4:12605507-12605526 Msa1314080:intron 20.0%
!!! TTTGGTTCAATTTTTAGAAA+GGG + chr8_4:12605636-12605655 None:intergenic 20.0%
!! CTAATATCTAACTAAACTTT+AGG + chr8_4:12605712-12605731 None:intergenic 20.0%
!! TAAAATGTACGTATATATTG+TGG - chr8_4:12605871-12605890 Msa1314080:intron 20.0%
!! AAAATGTACGTATATATTGT+GGG - chr8_4:12605872-12605891 Msa1314080:intron 20.0%
!!! GAAGGTACTAATTATATAAT+GGG + chr8_4:12606166-12606185 None:intergenic 20.0%
!!! CAATTATATTCTTTTTGGTA+GGG + chr8_4:12606188-12606207 None:intergenic 20.0%
!!! TGATGTATTCATTTTCTTTA+TGG - chr8_4:12606260-12606279 Msa1314080:CDS 20.0%
!!! ATTTTTAATTTTGTAGCAAG+TGG - chr8_4:12606453-12606472 Msa1314080:CDS 20.0%
!!! TTTGAATATGATGCTAATTT+TGG - chr8_4:12606567-12606586 Msa1314080:intron 20.0%
!! TATGATGTTTATAATGATCT+CGG - chr8_4:12607014-12607033 Msa1314080:CDS 20.0%
!!! AATTAATGTGTCCATTTTAT+AGG - chr8_4:12607173-12607192 Msa1314080:CDS 20.0%
!! AAAATTACAGATTGTAACAA+AGG + chr8_4:12607352-12607371 None:intergenic 20.0%
!! AAGTTTCAATTAAAAGTCAT+TGG - chr8_4:12608065-12608084 Msa1314080:intron 20.0%
!! TGTGATTGAAATTAAATTTG+TGG - chr8_4:12608117-12608136 Msa1314080:intron 20.0%
!! GGAATAAAAGCTTATAAATT+GGG + chr8_4:12608676-12608695 None:intergenic 20.0%
!! ATCAGAAAATATAATTTCGA+TGG - chr8_4:12608891-12608910 Msa1314080:intron 20.0%
!! TAATAATTCTATGCCAATAT+TGG - chr8_4:12608937-12608956 Msa1314080:intron 20.0%
!!! CTATTTTCAATTTGAACTTT+AGG + chr8_4:12609003-12609022 None:intergenic 20.0%
!! ATATTACTACATGAAAAGTT+AGG - chr8_4:12609120-12609139 Msa1314080:intron 20.0%
!! ATAAATCTTCTACTAATTGT+TGG + chr8_4:12609550-12609569 None:intergenic 20.0%
!! AATTAGTAGAAGATTTATTC+CGG - chr8_4:12609552-12609571 Msa1314080:intron 20.0%
!! ATTTAGAAAAAAATTGTGTG+TGG - chr8_4:12609937-12609956 Msa1314080:intron 20.0%
!! TTGAAGTCCAAAACATTTTT+GGG + chr8_4:12604281-12604300 None:intergenic 25.0%
! AGTTAAATATGTCTCTCTAT+AGG + chr8_4:12604550-12604569 None:intergenic 25.0%
! TAGCATATTGAATAAATGTG+TGG + chr8_4:12604592-12604611 None:intergenic 25.0%
!! ATCGATAGTTAAGAGTTTTA+TGG - chr8_4:12604861-12604880 Msa1314080:CDS 25.0%
! AATTCTCCTAAAAAGTTTAG+CGG + chr8_4:12605107-12605126 None:intergenic 25.0%
! TAACAACATGATATAGACAA+TGG - chr8_4:12605372-12605391 Msa1314080:intron 25.0%
! TGATATAGACAATGGAATAA+TGG - chr8_4:12605380-12605399 Msa1314080:intron 25.0%
!!! TGGAATAATGGATTAGTAAT+AGG - chr8_4:12605392-12605411 Msa1314080:intron 25.0%
!!! GGAATAATGGATTAGTAATA+GGG - chr8_4:12605393-12605412 Msa1314080:intron 25.0%
!!! GTTTGGTTCAATTTTTAGAA+AGG + chr8_4:12605637-12605656 None:intergenic 25.0%
!!! GATTTTTAATTTGACGTGTT+TGG + chr8_4:12605654-12605673 None:intergenic 25.0%
! TGACACGTTAGATTATATAA+GGG - chr8_4:12605946-12605965 Msa1314080:intron 25.0%
!! CTTTTATCAAGTTACTCTAT+GGG + chr8_4:12606112-12606131 None:intergenic 25.0%
!! TCTTTTATCAAGTTACTCTA+TGG + chr8_4:12606113-12606132 None:intergenic 25.0%
!!! GGAAGGTACTAATTATATAA+TGG + chr8_4:12606167-12606186 None:intergenic 25.0%
!!! CCAATTATATTCTTTTTGGT+AGG + chr8_4:12606189-12606208 None:intergenic 25.0%
! CCTACCAAAAAGAATATAAT+TGG - chr8_4:12606186-12606205 Msa1314080:CDS 25.0%
!! GGTACCAATTATATTCTTTT+TGG + chr8_4:12606193-12606212 None:intergenic 25.0%
! TTCAATTTGATTGTAACTCA+TGG - chr8_4:12606682-12606701 Msa1314080:intron 25.0%
! TCAATTTGATTGTAACTCAT+GGG - chr8_4:12606683-12606702 Msa1314080:intron 25.0%
! AAATTCATAGCTTACATCAT+TGG + chr8_4:12606751-12606770 None:intergenic 25.0%
!!! TCTTCTCTAAAGTGATTTAA+TGG + chr8_4:12606930-12606949 None:intergenic 25.0%
! GGACACATTAATTTCATTAA+CGG + chr8_4:12607166-12607185 None:intergenic 25.0%
! ATTAGAACGTTCCTATAAAA+TGG + chr8_4:12607187-12607206 None:intergenic 25.0%
!! TTTTATAGGAACGTTCTAAT+TGG - chr8_4:12607187-12607206 Msa1314080:intron 25.0%
! ATGACTTTATTCCATACATA+AGG + chr8_4:12607312-12607331 None:intergenic 25.0%
! ATTTGGCTAATTATATCTGT+TGG + chr8_4:12607451-12607470 None:intergenic 25.0%
!!! TAAAACTTGTGTTTTTTCTC+AGG - chr8_4:12607638-12607657 Msa1314080:intron 25.0%
! CGATACATTAAGAATACATT+TGG + chr8_4:12607855-12607874 None:intergenic 25.0%
! TGAAATTAAATTTGTGGAAC+AGG - chr8_4:12608123-12608142 Msa1314080:intron 25.0%
! AAATTTATCCTCTCCAAATA+TGG + chr8_4:12608199-12608218 None:intergenic 25.0%
! AAAAAATTGTATGACATTGC+AGG - chr8_4:12608585-12608604 Msa1314080:intron 25.0%
! GGGAATAAAAGCTTATAAAT+TGG + chr8_4:12608677-12608696 None:intergenic 25.0%
! CATTGATATTTATTGTGTCA+CGG + chr8_4:12608706-12608725 None:intergenic 25.0%
!! TTATATTTTCTGATGAGTCT+TGG + chr8_4:12608885-12608904 None:intergenic 25.0%
! ATTGGCATAGAATTATTAGT+GGG + chr8_4:12608935-12608954 None:intergenic 25.0%
! TATTGGCATAGAATTATTAG+TGG + chr8_4:12608936-12608955 None:intergenic 25.0%
! TAGATTATGGTTTCCAATAT+TGG + chr8_4:12608953-12608972 None:intergenic 25.0%
! CAATCAAAATGACTAGATTA+TGG + chr8_4:12608966-12608985 None:intergenic 25.0%
!! TTCAATTTGAACTTTAGGAA+AGG + chr8_4:12608998-12609017 None:intergenic 25.0%
! AAATTGTTTGTTTAACACAG+AGG - chr8_4:12609169-12609188 Msa1314080:intron 25.0%
! AATCTTGCTCCATTATTATA+TGG - chr8_4:12609455-12609474 Msa1314080:intron 25.0%
!! GAGAGAATAATAACAAGTTT+TGG - chr8_4:12609719-12609738 Msa1314080:intron 25.0%
! TTCTAAATAGAGATACTGTT+GGG + chr8_4:12609925-12609944 None:intergenic 25.0%
! TTTCTAAATAGAGATACTGT+TGG + chr8_4:12609926-12609945 None:intergenic 25.0%
! AATCATCACATTGATGTTAT+TGG + chr8_4:12609992-12610011 None:intergenic 25.0%
! ATAACATCAATGTGATGATT+AGG - chr8_4:12609992-12610011 Msa1314080:CDS 25.0%
!! ACATGTTTGCTAACTCTTTT+TGG + chr8_4:12604208-12604227 None:intergenic 30.0%
AAAAGAGTTAGCAAACATGT+TGG - chr8_4:12604208-12604227 Msa1314080:three_prime_UTR 30.0%
AAAGAGTTAGCAAACATGTT+GGG - chr8_4:12604209-12604228 Msa1314080:three_prime_UTR 30.0%
! GTTGAAGTCCAAAACATTTT+TGG + chr8_4:12604282-12604301 None:intergenic 30.0%
TATGAGAATTGTTAGTACCT+TGG - chr8_4:12605147-12605166 Msa1314080:CDS 30.0%
ATGAGAATTGTTAGTACCTT+GGG - chr8_4:12605148-12605167 Msa1314080:CDS 30.0%
TTAGTAATAGGGTTGTTACA+AGG - chr8_4:12605404-12605423 Msa1314080:intron 30.0%
GAGTAATGAAAGTTGTTACA+AGG - chr8_4:12605426-12605445 Msa1314080:intron 30.0%
!! TTCAATTTTTAGAAAGGGAG+GGG + chr8_4:12605631-12605650 None:intergenic 30.0%
!! GTTCAATTTTTAGAAAGGGA+GGG + chr8_4:12605632-12605651 None:intergenic 30.0%
TTAATAATGCTCAGGTGTAT+TGG + chr8_4:12605854-12605873 None:intergenic 30.0%
!! CGTACATTTTAATAATGCTC+AGG + chr8_4:12605862-12605881 None:intergenic 30.0%
CTGACACGTTAGATTATATA+AGG - chr8_4:12605945-12605964 Msa1314080:intron 30.0%
ACACCTTCATAAAAAGTAGT+TGG - chr8_4:12605981-12606000 Msa1314080:intron 30.0%
!!! ACACCAACTACTTTTTATGA+AGG + chr8_4:12606076-12606095 None:intergenic 30.0%
ATAAAAGACACCTTCACAAA+AGG - chr8_4:12606125-12606144 Msa1314080:CDS 30.0%
!! TATATTCTTTTTGGTAGGGA+AGG + chr8_4:12606184-12606203 None:intergenic 30.0%
TTAGTGGAAAAACAATGACA+AGG + chr8_4:12606214-12606233 None:intergenic 30.0%
!! GTCATTGTTTTTCCACTAAA+TGG - chr8_4:12606215-12606234 Msa1314080:CDS 30.0%
CTTGTTTATGTTCCATTTAG+TGG + chr8_4:12606230-12606249 None:intergenic 30.0%
CTAAATGGAACATAAACAAG+TGG - chr8_4:12606230-12606249 Msa1314080:CDS 30.0%
! TAATTTTGTAGCAAGTGGAA+AGG - chr8_4:12606458-12606477 Msa1314080:CDS 30.0%
! AATTTTGTAGCAAGTGGAAA+GGG - chr8_4:12606459-12606478 Msa1314080:CDS 30.0%
TTCTTATGTAAAATGCTCCA+GGG + chr8_4:12606596-12606615 None:intergenic 30.0%
TTTCTTATGTAAAATGCTCC+AGG + chr8_4:12606597-12606616 None:intergenic 30.0%
AATCAAATTGAACACTTCCA+CGG + chr8_4:12606674-12606693 None:intergenic 30.0%
! GTTCCAAGAGATGAAAATTT+TGG - chr8_4:12607265-12607284 Msa1314080:intron 30.0%
! TGACCAAAATTTTCATCTCT+TGG + chr8_4:12607271-12607290 None:intergenic 30.0%
! AAAGTACCTCTAATTACTTG+AGG + chr8_4:12607541-12607560 None:intergenic 30.0%
TGGAATACTGATGAAGAATT+TGG - chr8_4:12607773-12607792 Msa1314080:CDS 30.0%
AAACTTAATTCGATGGCTAA+TGG + chr8_4:12608283-12608302 None:intergenic 30.0%
CTATGAAGAATTCATACCAA+TGG + chr8_4:12608444-12608463 None:intergenic 30.0%
! CTATTTGTTGCTATGATGAA+TGG + chr8_4:12608635-12608654 None:intergenic 30.0%
ATTTATTGTGTCACGGTAAT+GGG + chr8_4:12608699-12608718 None:intergenic 30.0%
TATTTATTGTGTCACGGTAA+TGG + chr8_4:12608700-12608719 None:intergenic 30.0%
CGTGACACAATAAATATCAA+TGG - chr8_4:12608704-12608723 Msa1314080:intron 30.0%
! TATAGAGCAAACATTTTGTC+CGG - chr8_4:12608763-12608782 Msa1314080:intron 30.0%
GAAGAAATCTCAATGGAATT+TGG + chr8_4:12608791-12608810 None:intergenic 30.0%
TTCTGCAGTTTACAAGAATT+GGG - chr8_4:12608808-12608827 Msa1314080:intron 30.0%
TTGGCATAGAATTATTAGTG+GGG + chr8_4:12608934-12608953 None:intergenic 30.0%
AGAAATATGGGATGCTATTA+AGG - chr8_4:12609270-12609289 Msa1314080:intron 30.0%
AGTATAAGGATACATAGTCT+TGG + chr8_4:12609303-12609322 None:intergenic 30.0%
TAGACACTGAAATTCAGAAA+TGG - chr8_4:12609347-12609366 Msa1314080:intron 30.0%
AGAAGCTGTCCATATAATAA+TGG + chr8_4:12609467-12609486 None:intergenic 30.0%
ATCTTCTACTAATTGTTGGA+CGG + chr8_4:12609546-12609565 None:intergenic 30.0%
AATCACAGAAAGATCAACAA+GGG + chr8_4:12609659-12609678 None:intergenic 30.0%
ATATGTGAAAGTGGAATACA+TGG + chr8_4:12610135-12610154 None:intergenic 30.0%
CACTTTACTATATGTGAAAG+TGG + chr8_4:12610144-12610163 None:intergenic 30.0%
AGATTCATTTAATTGGTACG+TGG - chr8_4:12610215-12610234 Msa1314080:five_prime_UTR 30.0%
! GTTGATGCCCAAAAATGTTT+TGG - chr8_4:12604271-12604290 Msa1314080:three_prime_UTR 35.0%
TCAACTGCATAGAGACATTA+CGG + chr8_4:12604415-12604434 None:intergenic 35.0%
ATTAGTGCTACAAAGACTGA+TGG - chr8_4:12604434-12604453 Msa1314080:three_prime_UTR 35.0%
! GTTTCACCGCTAAACTTTTT+AGG - chr8_4:12605098-12605117 Msa1314080:CDS 35.0%
! ATTTGGTTCGAGAATTAGGA+GGG - chr8_4:12605174-12605193 Msa1314080:CDS 35.0%
! AAAAGTGTGTTTGGTTCACA+AGG - chr8_4:12605255-12605274 Msa1314080:intron 35.0%
! AAAGTGTGTTTGGTTCACAA+GGG - chr8_4:12605256-12605275 Msa1314080:intron 35.0%
!! GGTTCAATTTTTAGAAAGGG+AGG + chr8_4:12605633-12605652 None:intergenic 35.0%
CACCTTCATAAAAAGTAGTG+TGG - chr8_4:12605982-12606001 Msa1314080:intron 35.0%
!!! CACCACACTACTTTTTATGA+AGG + chr8_4:12605987-12606006 None:intergenic 35.0%
! TTTTATCAAGTCACACCTCA+AGG - chr8_4:12606009-12606028 Msa1314080:CDS 35.0%
AAAGTGAAAATCACACCTTG+AGG + chr8_4:12606027-12606046 None:intergenic 35.0%
! ATAGAAGACACCTTTTGTGA+AGG + chr8_4:12606138-12606157 None:intergenic 35.0%
ACGGTTAGGAATATCTTCAA+GGG + chr8_4:12606655-12606674 None:intergenic 35.0%
CTAAAGTGATTTAATGGAGC+TGG + chr8_4:12606924-12606943 None:intergenic 35.0%
GGTAGAAAACCAACTAGAAA+AGG - chr8_4:12607119-12607138 Msa1314080:CDS 35.0%
!! GTGAACTAACCTTTTCTAGT+TGG + chr8_4:12607131-12607150 None:intergenic 35.0%
TCATCAGACTTCCTTATGTA+TGG - chr8_4:12607298-12607317 Msa1314080:CDS 35.0%
ACGAACATGTTAACTATAGG+TGG + chr8_4:12607580-12607599 None:intergenic 35.0%
GTGACGAACATGTTAACTAT+AGG + chr8_4:12607583-12607602 None:intergenic 35.0%
TGAAGAAGACGAATCACATT+AGG + chr8_4:12607824-12607843 None:intergenic 35.0%
!! CATCTAATGTGCTTTTTGGT+GGG + chr8_4:12607951-12607970 None:intergenic 35.0%
GAACACTTAGAGACTAATCT+TGG - chr8_4:12608009-12608028 Msa1314080:intron 35.0%
ATGCATCATGGTAATCTAAG+AGG + chr8_4:12608171-12608190 None:intergenic 35.0%
AATATGGCATGAATGCATCA+TGG + chr8_4:12608183-12608202 None:intergenic 35.0%
TGATGCATTCATGCCATATT+TGG - chr8_4:12608183-12608202 Msa1314080:intron 35.0%
ATCTTGTTCTTGCAAGATGA+TGG - chr8_4:12608247-12608266 Msa1314080:intron 35.0%
TCTTGTTCTTGCAAGATGAT+GGG - chr8_4:12608248-12608267 Msa1314080:intron 35.0%
TTAAGTTTGCCACACTCAAA+TGG - chr8_4:12608295-12608314 Msa1314080:intron 35.0%
TAAGTTTGCCACACTCAAAT+GGG - chr8_4:12608296-12608315 Msa1314080:intron 35.0%
!! AAGGTGTCGAAAGTACAATT+TGG - chr8_4:12608362-12608381 Msa1314080:intron 35.0%
! CGAAAGTACAATTTGGATGT+TGG - chr8_4:12608369-12608388 Msa1314080:intron 35.0%
TACAATTTGGATGTTGGCAA+AGG - chr8_4:12608375-12608394 Msa1314080:intron 35.0%
!! CATTCTGTTTCTATAACCCT+TGG - chr8_4:12608484-12608503 Msa1314080:intron 35.0%
GTACGTAACTATATCTGCAT+TGG + chr8_4:12608510-12608529 None:intergenic 35.0%
TTGTGGCATACATTATCTCT+TGG + chr8_4:12608557-12608576 None:intergenic 35.0%
TTTATTGTGTCACGGTAATG+GGG + chr8_4:12608698-12608717 None:intergenic 35.0%
! ATAGAGCAAACATTTTGTCC+GGG - chr8_4:12608764-12608783 Msa1314080:intron 35.0%
AACTGCAGAAGAAATCTCAA+TGG + chr8_4:12608798-12608817 None:intergenic 35.0%
CTTCTGCAGTTTACAAGAAT+TGG - chr8_4:12608807-12608826 Msa1314080:intron 35.0%
! TATTTTCTGATGAGTCTTGG+TGG + chr8_4:12608882-12608901 None:intergenic 35.0%
TGGCATAGAATTATTAGTGG+GGG + chr8_4:12608933-12608952 None:intergenic 35.0%
ACAAAATTCTGCTATTCTCG+AGG - chr8_4:12609078-12609097 Msa1314080:intron 35.0%
ACACTGAAATTCAGAAATGG+TGG - chr8_4:12609350-12609369 Msa1314080:intron 35.0%
! TGAAATTCAGAAATGGTGGA+AGG - chr8_4:12609354-12609373 Msa1314080:intron 35.0%
TCTTGAACAGTTTGCATCTT+AGG + chr8_4:12609427-12609446 None:intergenic 35.0%
AACTTCGGACAATATCCTTA+TGG - chr8_4:12609505-12609524 Msa1314080:intron 35.0%
TTCAGGATATATCCTCCATA+AGG + chr8_4:12609523-12609542 None:intergenic 35.0%
! GTTCTCAAATATGCCTTTTG+AGG + chr8_4:12609616-12609635 None:intergenic 35.0%
CAATCACAGAAAGATCAACA+AGG + chr8_4:12609660-12609679 None:intergenic 35.0%
!!! AGTTTTGGACATCTGATACA+AGG - chr8_4:12609734-12609753 Msa1314080:intron 35.0%
!! GTTTTGGACATCTGATACAA+GGG - chr8_4:12609735-12609754 Msa1314080:intron 35.0%
! TTTGCTTCCAAACTTTTGGA+AGG + chr8_4:12609770-12609789 None:intergenic 35.0%
!!! CTAGTTTGCTTCCAAACTTT+TGG + chr8_4:12609774-12609793 None:intergenic 35.0%
AGCAAACTAGCTGAAATTGA+AGG - chr8_4:12609784-12609803 Msa1314080:intron 35.0%
GCAAACTAGCTGAAATTGAA+GGG - chr8_4:12609785-12609804 Msa1314080:intron 35.0%
TTGAAGGGAAAATTACCAAG+AGG - chr8_4:12609800-12609819 Msa1314080:intron 35.0%
ACTAGATTCATTGTTCCTCT+TGG + chr8_4:12609818-12609837 None:intergenic 35.0%
GAAGAAGGTTTAACATTCAG+AGG - chr8_4:12609895-12609914 Msa1314080:intron 35.0%
TACAACATCACTGCTGTATT+TGG - chr8_4:12610056-12610075 Msa1314080:CDS 35.0%
ACAACATCACTGCTGTATTT+GGG - chr8_4:12610057-12610076 Msa1314080:CDS 35.0%
ATGTTGGGCATCTTTGACAA+GGG - chr8_4:12604224-12604243 Msa1314080:three_prime_UTR 40.0%
TGACAAGGGCCAAAAAATCA+AGG - chr8_4:12604238-12604257 Msa1314080:three_prime_UTR 40.0%
GACAAGGGCCAAAAAATCAA+GGG - chr8_4:12604239-12604258 Msa1314080:three_prime_UTR 40.0%
! GTCCATTTGGTTCGAGAATT+AGG - chr8_4:12605170-12605189 Msa1314080:CDS 40.0%
CTCCTAATTCTCGAACCAAA+TGG + chr8_4:12605175-12605194 None:intergenic 40.0%
! CATTTGGTTCGAGAATTAGG+AGG - chr8_4:12605173-12605192 Msa1314080:CDS 40.0%
! TTTGGTTCGAGAATTAGGAG+GGG - chr8_4:12605175-12605194 Msa1314080:CDS 40.0%
! AAGTGTGTTTGGTTCACAAG+GGG - chr8_4:12605257-12605276 Msa1314080:intron 40.0%
!!! TTTGGTTCGAGAGTTTTGGA+GGG + chr8_4:12605684-12605703 None:intergenic 40.0%
TCCAAAACTCTCGAACCAAA+CGG - chr8_4:12605684-12605703 Msa1314080:CDS 40.0%
!! ACTAAACTTTAGGGTCCGTT+TGG + chr8_4:12605702-12605721 None:intergenic 40.0%
TCTACCACAGTTACCAACTT+TGG - chr8_4:12606515-12606534 Msa1314080:intron 40.0%
CTACCACAGTTACCAACTTT+GGG - chr8_4:12606516-12606535 Msa1314080:intron 40.0%
!!! GATGCTAATTTTGGAATCCC+TGG - chr8_4:12606576-12606595 Msa1314080:intron 40.0%
GAATATCTTCAAGGGTCACA+CGG + chr8_4:12606647-12606666 None:intergenic 40.0%
CACGGTTAGGAATATCTTCA+AGG + chr8_4:12606656-12606675 None:intergenic 40.0%
CTTGAAGATATTCCTAACCG+TGG - chr8_4:12606654-12606673 Msa1314080:CDS 40.0%
AATTGAACACTTCCACGGTT+AGG + chr8_4:12606669-12606688 None:intergenic 40.0%
GAAGAGTTGCAGAATCTAAG+AGG - chr8_4:12606948-12606967 Msa1314080:CDS 40.0%
TTGCAGAATCTAAGAGGAGA+TGG - chr8_4:12606954-12606973 Msa1314080:CDS 40.0%
AATCTAAGAGGAGATGGAAC+TGG - chr8_4:12606960-12606979 Msa1314080:CDS 40.0%
AACTGGAGAACGCAAAGAAT+GGG - chr8_4:12606977-12606996 Msa1314080:CDS 40.0%
AGATCCTAAGAGTGAGAAAC+CGG - chr8_4:12607231-12607250 Msa1314080:intron 40.0%
CTTGGAACATAAATCACACC+CGG + chr8_4:12607253-12607272 None:intergenic 40.0%
TCGAAGCTATCGAACTCATT+CGG + chr8_4:12607391-12607410 None:intergenic 40.0%
!! TTGAGGTGGTGGAAACTTAA+GGG + chr8_4:12607524-12607543 None:intergenic 40.0%
GTACCTCTAATTACTTGAGG+TGG + chr8_4:12607538-12607557 None:intergenic 40.0%
!! GCATCTAATGTGCTTTTTGG+TGG + chr8_4:12607952-12607971 None:intergenic 40.0%
! GTGGCATCTAATGTGCTTTT+TGG + chr8_4:12607955-12607974 None:intergenic 40.0%
ACATTAGATGCCACTGTCTA+TGG - chr8_4:12607961-12607980 Msa1314080:intron 40.0%
!! GTTTTGATCACCATAGACAG+TGG + chr8_4:12607974-12607993 None:intergenic 40.0%
TGGTGATATCACAGTAGAAG+AGG - chr8_4:12608029-12608048 Msa1314080:intron 40.0%
TTTGTGGAACAGGCACTTAA+TGG - chr8_4:12608133-12608152 Msa1314080:intron 40.0%
CATTCATGCCATATTTGGAG+AGG - chr8_4:12608188-12608207 Msa1314080:intron 40.0%
GTGTGGCAAACTTAATTCGA+TGG + chr8_4:12608290-12608309 None:intergenic 40.0%
AAGTTTGCCACACTCAAATG+GGG - chr8_4:12608297-12608316 Msa1314080:intron 40.0%
CTTTGCTTTCAGCACCATAT+TGG + chr8_4:12608324-12608343 None:intergenic 40.0%
ATCATCAACTCATGAGCCAT+TGG - chr8_4:12608425-12608444 Msa1314080:intron 40.0%
! ACTATATCTGCATTGGCCAA+GGG + chr8_4:12608503-12608522 None:intergenic 40.0%
! AACTATATCTGCATTGGCCA+AGG + chr8_4:12608504-12608523 None:intergenic 40.0%
GTTGAATACTCATGCAGTGA+TGG - chr8_4:12608607-12608626 Msa1314080:intron 40.0%
! TTATTGTGTCACGGTAATGG+GGG + chr8_4:12608697-12608716 None:intergenic 40.0%
ATCTCAATGGAATTTGGTCC+CGG + chr8_4:12608785-12608804 None:intergenic 40.0%
TACCAGCTGATCTTATCAAG+AGG - chr8_4:12608849-12608868 Msa1314080:intron 40.0%
TACCTCTTGATAAGATCAGC+TGG + chr8_4:12608854-12608873 None:intergenic 40.0%
TCTGCTATTCTCGAGGTAAT+TGG - chr8_4:12609085-12609104 Msa1314080:intron 40.0%
!! CCATATTTCTAGTCCGTCAA+CGG + chr8_4:12609260-12609279 None:intergenic 40.0%
!! CGTTGACGGACTAGAAATAT+GGG - chr8_4:12609258-12609277 Msa1314080:intron 40.0%
TATGGGATGCTATTAAGGCA+TGG - chr8_4:12609275-12609294 Msa1314080:intron 40.0%
ATGGGATGCTATTAAGGCAT+GGG - chr8_4:12609276-12609295 Msa1314080:intron 40.0%
CTCATCTGTTGGGTAGTATA+AGG + chr8_4:12609317-12609336 None:intergenic 40.0%
CTTATACTACCCAACAGATG+AGG - chr8_4:12609315-12609334 Msa1314080:intron 40.0%
TTTGTACTGCCTCATCTGTT+GGG + chr8_4:12609327-12609346 None:intergenic 40.0%
ATTTGTACTGCCTCATCTGT+TGG + chr8_4:12609328-12609347 None:intergenic 40.0%
TGGAAGGAAGCTGTAGAAAA+GGG - chr8_4:12609370-12609389 Msa1314080:intron 40.0%
GATGCAAACTGTTCAAGACT+TGG - chr8_4:12609429-12609448 Msa1314080:intron 40.0%
CTTCATGCAGCTGTTAACTT+CGG - chr8_4:12609490-12609509 Msa1314080:intron 40.0%
TTCGGACAATATCCTTATGG+AGG - chr8_4:12609508-12609527 Msa1314080:intron 40.0%
TACTAATTGTTGGACGGTTC+AGG + chr8_4:12609540-12609559 None:intergenic 40.0%
TTCACCATCTCATCGTATTC+CGG + chr8_4:12609589-12609608 None:intergenic 40.0%
GATGGTGAAAAGTCCTCAAA+AGG - chr8_4:12609600-12609619 Msa1314080:intron 40.0%
! TCAACAAGGGTTTGGTACTT+TGG + chr8_4:12609646-12609665 None:intergenic 40.0%
CAGAAAGATCAACAAGGGTT+TGG + chr8_4:12609654-12609673 None:intergenic 40.0%
CTCTCCAAGATACACTTCAT+CGG + chr8_4:12609704-12609723 None:intergenic 40.0%
GTTCAAGCCTTCCAAAAGTT+TGG - chr8_4:12609760-12609779 Msa1314080:intron 40.0%
TACATGGTGCAAAGCAATAG+TGG + chr8_4:12610119-12610138 None:intergenic 40.0%
CATGTTGGGCATCTTTGACA+AGG - chr8_4:12604223-12604242 Msa1314080:three_prime_UTR 45.0%
!!! CCACAGTGCCCTTGATTTTT+TGG + chr8_4:12604250-12604269 None:intergenic 45.0%
!! CCAAAAAATCAAGGGCACTG+TGG - chr8_4:12604247-12604266 Msa1314080:three_prime_UTR 45.0%
TTCAACGCCATAACGTCCAT+CGG - chr8_4:12604296-12604315 Msa1314080:three_prime_UTR 45.0%
ATAACGTCCATCGGTAAAGG+CGG - chr8_4:12604305-12604324 Msa1314080:three_prime_UTR 45.0%
GACTCCTCCGATCAAATTTC+CGG + chr8_4:12604345-12604364 None:intergenic 45.0%
AACAACTCCACCAACAATGC+TGG + chr8_4:12604369-12604388 None:intergenic 45.0%
AGAGACATTACGGCCTAAGA+AGG + chr8_4:12604405-12604424 None:intergenic 45.0%
! TGAGCTTAGCTCAGTTGGTA+AGG - chr8_4:12604626-12604645 Msa1314080:CDS 45.0%
GTTAGTACCTTGGGTCCATT+TGG - chr8_4:12605157-12605176 Msa1314080:CDS 45.0%
!! AGGGGAGGAATTTTAACGGA+GGG - chr8_4:12605208-12605227 Msa1314080:CDS 45.0%
!! AGGAATTTTAACGGAGGGGA+GGG - chr8_4:12605213-12605232 Msa1314080:CDS 45.0%
!!! TTGGTTCGAGAGTTTTGGAG+GGG + chr8_4:12605683-12605702 None:intergenic 45.0%
!! GTTTGGTTCGAGAGTTTTGG+AGG + chr8_4:12605685-12605704 None:intergenic 45.0%
!! TCCGTTTGGTTCGAGAGTTT+TGG + chr8_4:12605688-12605707 None:intergenic 45.0%
TGCTCAGGTGTATTGGAGTT+TGG + chr8_4:12605847-12605866 None:intergenic 45.0%
TCTTGTCTTGCTCCCAAAGT+TGG + chr8_4:12606531-12606550 None:intergenic 45.0%
AATGGAGCTGGTGTTTGACT+TGG + chr8_4:12606912-12606931 None:intergenic 45.0%
GAACTGGAGAACGCAAAGAA+TGG - chr8_4:12606976-12606995 Msa1314080:CDS 45.0%
GAGAACGCAAAGAATGGGAT+AGG - chr8_4:12606982-12607001 Msa1314080:CDS 45.0%
TCCAAGGATTGGACGAACAA+GGG + chr8_4:12607060-12607079 None:intergenic 45.0%
GATCCTAAGAGTGAGAAACC+GGG - chr8_4:12607232-12607251 Msa1314080:intron 45.0%
GAAGCTATCGAACTCATTCG+GGG + chr8_4:12607389-12607408 None:intergenic 45.0%
CGAAGCTATCGAACTCATTC+GGG + chr8_4:12607390-12607409 None:intergenic 45.0%
! ATTTCCTTAAGGGCTGGCAA+GGG + chr8_4:12607478-12607497 None:intergenic 45.0%
! CTTAAGGGCTTGTTCACCAT+CGG + chr8_4:12607509-12607528 None:intergenic 45.0%
!! CTTGAGGTGGTGGAAACTTA+AGG + chr8_4:12607525-12607544 None:intergenic 45.0%
CCTCTAATTACTTGAGGTGG+TGG + chr8_4:12607535-12607554 None:intergenic 45.0%
CCACCACCTCAAGTAATTAG+AGG - chr8_4:12607532-12607551 Msa1314080:intron 45.0%
GTGTAGTTAGCAAGTCTGCA+TGG - chr8_4:12607753-12607772 Msa1314080:CDS 45.0%
TTTGGAAGAGAGATGCTTGC+TGG - chr8_4:12607791-12607810 Msa1314080:CDS 45.0%
GTGCAAAAGCTTACGCTACA+AGG - chr8_4:12608221-12608240 Msa1314080:intron 45.0%
TATTGGACCCCATTTGAGTG+TGG + chr8_4:12608307-12608326 None:intergenic 45.0%
CACTCAAATGGGGTCCAATA+TGG - chr8_4:12608307-12608326 Msa1314080:intron 45.0%
CATTATCTCTTGGCCAATGC+AGG + chr8_4:12608547-12608566 None:intergenic 45.0%
CAAGCTCTCATCAATGCTGA+CGG - chr8_4:12608737-12608756 Msa1314080:intron 45.0%
!! ACACAGAGGATTAGCTGTTG+AGG - chr8_4:12609183-12609202 Msa1314080:intron 45.0%
AGTCCTCTATCACAAGACGA+AGG + chr8_4:12609228-12609247 None:intergenic 45.0%
!! CCGTTGACGGACTAGAAATA+TGG - chr8_4:12609257-12609276 Msa1314080:intron 45.0%
GTGGAAGGAAGCTGTAGAAA+AGG - chr8_4:12609369-12609388 Msa1314080:intron 45.0%
GAAGCTGTAGAAAAGGGTCA+TGG - chr8_4:12609376-12609395 Msa1314080:intron 45.0%
GTGACTTGAAAGACAAGCCA+TGG - chr8_4:12609398-12609417 Msa1314080:intron 45.0%
ACTTGAAAGACAAGCCATGG+TGG - chr8_4:12609401-12609420 Msa1314080:intron 45.0%
AGAAGATTTATTCCGGAGCC+AGG - chr8_4:12609559-12609578 Msa1314080:intron 45.0%
AACTCCGGAATACGATGAGA+TGG - chr8_4:12609582-12609601 Msa1314080:intron 45.0%
! TCTAGTTTGAGAAACCGCAC+CGG - chr8_4:12609832-12609851 Msa1314080:intron 45.0%
AAAGTGTAGGGCAATTGCAC+TGG + chr8_4:12609859-12609878 None:intergenic 45.0%
GAACGAAGGAGCAAAGTGTA+GGG + chr8_4:12609871-12609890 None:intergenic 45.0%
AACCTTCTTCACTCGAACGA+AGG + chr8_4:12609885-12609904 None:intergenic 45.0%
!!! AAAACAATAATATAATATTT+TGG - chr8_4:12605911-12605930 Msa1314080:intron 5.0%
!!! AAACAATAATATAATATTTT+GGG - chr8_4:12605912-12605931 Msa1314080:intron 5.0%
GCCATAACGTCCATCGGTAA+AGG - chr8_4:12604302-12604321 Msa1314080:three_prime_UTR 50.0%
GCCTTTACCGATGGACGTTA+TGG + chr8_4:12604306-12604325 None:intergenic 50.0%
GACGCTGCCGGAAATTTGAT+CGG - chr8_4:12604335-12604354 Msa1314080:three_prime_UTR 50.0%
GATACTGCCACTGCCTTCTT+AGG - chr8_4:12604389-12604408 Msa1314080:three_prime_UTR 50.0%
ATTACGGCCTAAGAAGGCAG+TGG + chr8_4:12604399-12604418 None:intergenic 50.0%
TCTCGAACCAAATGGACCCA+AGG + chr8_4:12605167-12605186 None:intergenic 50.0%
GTTCGAGAATTAGGAGGGGA+GGG - chr8_4:12605179-12605198 Msa1314080:CDS 50.0%
TTCGAGAATTAGGAGGGGAG+GGG - chr8_4:12605180-12605199 Msa1314080:CDS 50.0%
! GGGGAGGGGAGGAATTTTAA+CGG - chr8_4:12605204-12605223 Msa1314080:CDS 50.0%
!! GAGGGGAGGAATTTTAACGG+AGG - chr8_4:12605207-12605226 Msa1314080:CDS 50.0%
!! GGGGAGGAATTTTAACGGAG+GGG - chr8_4:12605209-12605228 Msa1314080:CDS 50.0%
!! GAGGAATTTTAACGGAGGGG+AGG - chr8_4:12605212-12605231 Msa1314080:CDS 50.0%
!! GGAATTTTAACGGAGGGGAG+GGG - chr8_4:12605214-12605233 Msa1314080:CDS 50.0%
! TGTGTTTGGTTCACAAGGGG+AGG - chr8_4:12605260-12605279 Msa1314080:intron 50.0%
! GTGTTTGGTTCACAAGGGGA+GGG - chr8_4:12605261-12605280 Msa1314080:intron 50.0%
! TGTTTGGTTCACAAGGGGAG+GGG - chr8_4:12605262-12605281 Msa1314080:intron 50.0%
!!! TTCGAGAGTTTTGGAGGGGA+GGG + chr8_4:12605679-12605698 None:intergenic 50.0%
TGTAGCAAGTGGAAAGGGAC+TGG - chr8_4:12606464-12606483 Msa1314080:CDS 50.0%
!! TGGAAAGGGACTGGTTGGAA+AGG - chr8_4:12606473-12606492 Msa1314080:intron 50.0%
!! GCTCCCAAAGTTGGTAACTG+TGG + chr8_4:12606522-12606541 None:intergenic 50.0%
GATCTCGGAAATCCAGATCG+TGG - chr8_4:12607029-12607048 Msa1314080:CDS 50.0%
CTCCAAGGATTGGACGAACA+AGG + chr8_4:12607061-12607080 None:intergenic 50.0%
CTTGTTCGTCCAATCCTTGG+AGG - chr8_4:12607059-12607078 Msa1314080:CDS 50.0%
GTGCTAGATCCTCCAAGGAT+TGG + chr8_4:12607071-12607090 None:intergenic 50.0%
ACACCCGGTTTCTCACTCTT+AGG + chr8_4:12607238-12607257 None:intergenic 50.0%
GATAGCTTCGATGAAGTGCG+CGG - chr8_4:12607400-12607419 Msa1314080:CDS 50.0%
! TTTCCTTAAGGGCTGGCAAG+GGG + chr8_4:12607477-12607496 None:intergenic 50.0%
! GATTTCCTTAAGGGCTGGCA+AGG + chr8_4:12607479-12607498 None:intergenic 50.0%
GGTGCGGAGGATTTCCTTAA+GGG + chr8_4:12607488-12607507 None:intergenic 50.0%
GTATTCTTGCCTGCACACGA+AGG - chr8_4:12608343-12608362 Msa1314080:intron 50.0%
CTGCATAGCTACACCTGCAT+TGG - chr8_4:12608531-12608550 Msa1314080:intron 50.0%
TCACAAGACGAAGGCCATGA+GGG + chr8_4:12609219-12609238 None:intergenic 50.0%
ATCACAAGACGAAGGCCATG+AGG + chr8_4:12609220-12609239 None:intergenic 50.0%
TGGCCTTCGTCTTGTGATAG+AGG - chr8_4:12609222-12609241 Msa1314080:intron 50.0%
GACTACCCTTATGCCGTTGA+CGG - chr8_4:12609244-12609263 Msa1314080:intron 50.0%
CTAGTCCGTCAACGGCATAA+GGG + chr8_4:12609252-12609271 None:intergenic 50.0%
TCTAGTCCGTCAACGGCATA+AGG + chr8_4:12609253-12609272 None:intergenic 50.0%
GTTTGCATCTTAGGCCACCA+TGG + chr8_4:12609418-12609437 None:intergenic 50.0%
TCATCGTATTCCGGAGTTCC+TGG + chr8_4:12609580-12609599 None:intergenic 50.0%
GCGTCCGATGAAGTGTATCT+TGG - chr8_4:12609697-12609716 Msa1314080:intron 50.0%
CGAACGAAGGAGCAAAGTGT+AGG + chr8_4:12609872-12609891 None:intergenic 50.0%
CTCCTTCGTTCGAGTGAAGA+AGG - chr8_4:12609880-12609899 Msa1314080:intron 50.0%
TCAAATTTCCGGCAGCGTCG+AGG + chr8_4:12604334-12604353 None:intergenic 55.0%
GCTGCCGGAAATTTGATCGG+AGG - chr8_4:12604338-12604357 Msa1314080:three_prime_UTR 55.0%
GGAGGAGTCACCAGCATTGT+TGG - chr8_4:12604356-12604375 Msa1314080:three_prime_UTR 55.0%
GGAGTCACCAGCATTGTTGG+TGG - chr8_4:12604359-12604378 Msa1314080:three_prime_UTR 55.0%
CCAACTGAGCTAAGCTCACG+AGG + chr8_4:12604624-12604643 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG - chr8_4:12604621-12604640 Msa1314080:CDS 55.0%
GGTTCGAGAATTAGGAGGGG+AGG - chr8_4:12605178-12605197 Msa1314080:CDS 55.0%
AGAATTAGGAGGGGAGGGGA+GGG - chr8_4:12605184-12605203 Msa1314080:CDS 55.0%
!! ATTTTAACGGAGGGGAGGGG+AGG - chr8_4:12605217-12605236 Msa1314080:CDS 55.0%
! TTTTAACGGAGGGGAGGGGA+GGG - chr8_4:12605218-12605237 Msa1314080:CDS 55.0%
!!! TCGAGAGTTTTGGAGGGGAG+GGG + chr8_4:12605678-12605697 None:intergenic 55.0%
!!! GTTCGAGAGTTTTGGAGGGG+AGG + chr8_4:12605680-12605699 None:intergenic 55.0%
! GCAAGTGGAAAGGGACTGGT+TGG - chr8_4:12606468-12606487 Msa1314080:CDS 55.0%
CTTCAAGGGTCACACGGACA+AGG + chr8_4:12606641-12606660 None:intergenic 55.0%
GCCCTTGTTCGTCCAATCCT+TGG - chr8_4:12607056-12607075 Msa1314080:CDS 55.0%
GATGGGTGCTAGATCCTCCA+AGG + chr8_4:12607076-12607095 None:intergenic 55.0%
TACCACTTCTAACCCTGCGC+GGG + chr8_4:12607103-12607122 None:intergenic 55.0%
CTACCACTTCTAACCCTGCG+CGG + chr8_4:12607104-12607123 None:intergenic 55.0%
! GAAGTGCGCGGACTTTTCGA+AGG - chr8_4:12607412-12607431 Msa1314080:CDS 55.0%
CGGAGGATTTCCTTAAGGGC+TGG + chr8_4:12607484-12607503 None:intergenic 55.0%
CGGTGCGGAGGATTTCCTTA+AGG + chr8_4:12607489-12607508 None:intergenic 55.0%
AAGGAAATCCTCCGCACCGA+TGG - chr8_4:12607490-12607509 Msa1314080:CDS 55.0%
CTTTCGACACCTTCGTGTGC+AGG + chr8_4:12608355-12608374 None:intergenic 55.0%
GAGGATCCATCTTCCCCTCA+TGG - chr8_4:12609202-12609221 Msa1314080:intron 55.0%
CACAAGACGAAGGCCATGAG+GGG + chr8_4:12609218-12609237 None:intergenic 55.0%
TATTCCGGAGCCAGGAACTC+CGG - chr8_4:12609567-12609586 Msa1314080:intron 55.0%
TATTCCGGAGTTCCTGGCTC+CGG + chr8_4:12609574-12609593 None:intergenic 55.0%
! GTAGGGCAATTGCACTGGTC+CGG + chr8_4:12609854-12609873 None:intergenic 55.0%
GAGGACACCGCCTTTACCGA+TGG + chr8_4:12604315-12604334 None:intergenic 60.0%
GAGAATTAGGAGGGGAGGGG+AGG - chr8_4:12605183-12605202 Msa1314080:CDS 60.0%
GAATTAGGAGGGGAGGGGAG+GGG - chr8_4:12605185-12605204 Msa1314080:CDS 60.0%
TTTAACGGAGGGGAGGGGAG+GGG - chr8_4:12605219-12605238 Msa1314080:CDS 60.0%
TTGGTTCACAAGGGGAGGGG+AGG - chr8_4:12605265-12605284 Msa1314080:intron 60.0%
TGGTTCACAAGGGGAGGGGA+GGG - chr8_4:12605266-12605285 Msa1314080:intron 60.0%
CTTCTAACCCTGCGCGGGTA+GGG + chr8_4:12607098-12607117 None:intergenic 60.0%
ACTTCTAACCCTGCGCGGGT+AGG + chr8_4:12607099-12607118 None:intergenic 60.0%
TACCCGCGCAGGGTTAGAAG+TGG - chr8_4:12607098-12607117 Msa1314080:CDS 60.0%
! GTGCGCGGACTTTTCGAAGG+TGG - chr8_4:12607415-12607434 Msa1314080:CDS 60.0%
CTTGTTCACCATCGGTGCGG+AGG + chr8_4:12607501-12607520 None:intergenic 60.0%
! GGGCTTGTTCACCATCGGTG+CGG + chr8_4:12607504-12607523 None:intergenic 60.0%
CGAAGGCCATGAGGGGAAGA+TGG + chr8_4:12609211-12609230 None:intergenic 60.0%
! GCAATTGCACTGGTCCGGTG+CGG + chr8_4:12609849-12609868 None:intergenic 60.0%
!! ACAAGGGCGTCGCCACGATC+TGG + chr8_4:12607044-12607063 None:intergenic 65.0%
AACCCTGCGCGGGTAGGGAT+GGG + chr8_4:12607093-12607112 None:intergenic 65.0%
TAACCCTGCGCGGGTAGGGA+TGG + chr8_4:12607094-12607113 None:intergenic 65.0%
! GGGCTGGCAAGGGGCTGATT+TGG + chr8_4:12607468-12607487 None:intergenic 65.0%
CAGCCCCTTGCCAGCCCTTA+AGG - chr8_4:12607471-12607490 Msa1314080:CDS 65.0%
TTAGGAGGGGAGGGGAGGGG+AGG - chr8_4:12605188-12605207 Msa1314080:CDS 70.0%
TAGGAGGGGAGGGGAGGGGA+GGG - chr8_4:12605189-12605208 Msa1314080:CDS 70.0%
CACCCATCCCTACCCGCGCA+GGG - chr8_4:12607088-12607107 Msa1314080:CDS 70.0%
GGCGGTGTCCTCGACGCTGC+CGG - chr8_4:12604323-12604342 Msa1314080:three_prime_UTR 75.0%
AGGAGGGGAGGGGAGGGGAG+GGG - chr8_4:12605190-12605209 Msa1314080:CDS 75.0%
AACGGAGGGGAGGGGAGGGG+AGG - chr8_4:12605222-12605241 Msa1314080:CDS 75.0%
GCACCCATCCCTACCCGCGC+AGG - chr8_4:12607087-12607106 Msa1314080:CDS 75.0%
! AGGGGAGGGGAGGGGAGGGG+AGG - chr8_4:12605193-12605212 Msa1314080:CDS 80.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 12604153 12610281 12604153 ID=Msa1314080;Name=Msa1314080
chr8_4 mRNA 12604153 12610281 12604153 ID=Msa1314080-mRNA-1;Parent=Msa1314080;Name=Msa1314080-mRNA-1;_AED=0.30;_eAED=0.30;_QI=71|1|1|1|1|1|9|339|864
chr8_4 exon 12604153 12605245 12604153 ID=Msa1314080-mRNA-1:exon:4762;Parent=Msa1314080-mRNA-1
chr8_4 exon 12605564 12605827 12605564 ID=Msa1314080-mRNA-1:exon:4761;Parent=Msa1314080-mRNA-1
chr8_4 exon 12605988 12606289 12605988 ID=Msa1314080-mRNA-1:exon:4760;Parent=Msa1314080-mRNA-1
chr8_4 exon 12606384 12606491 12606384 ID=Msa1314080-mRNA-1:exon:4759;Parent=Msa1314080-mRNA-1
chr8_4 exon 12606590 12606675 12606590 ID=Msa1314080-mRNA-1:exon:4758;Parent=Msa1314080-mRNA-1
chr8_4 exon 12606881 12607201 12606881 ID=Msa1314080-mRNA-1:exon:4757;Parent=Msa1314080-mRNA-1
chr8_4 exon 12607294 12607534 12607294 ID=Msa1314080-mRNA-1:exon:4756;Parent=Msa1314080-mRNA-1
chr8_4 exon 12607679 12607965 12607679 ID=Msa1314080-mRNA-1:exon:4755;Parent=Msa1314080-mRNA-1
chr8_4 exon 12609979 12610281 12609979 ID=Msa1314080-mRNA-1:exon:4754;Parent=Msa1314080-mRNA-1
chr8_4 five_prime_UTR 12610211 12610281 12610211 ID=Msa1314080-mRNA-1:five_prime_utr;Parent=Msa1314080-mRNA-1
chr8_4 CDS 12609979 12610210 12609979 ID=Msa1314080-mRNA-1:cds;Parent=Msa1314080-mRNA-1
chr8_4 CDS 12607679 12607965 12607679 ID=Msa1314080-mRNA-1:cds;Parent=Msa1314080-mRNA-1
chr8_4 CDS 12607294 12607534 12607294 ID=Msa1314080-mRNA-1:cds;Parent=Msa1314080-mRNA-1
chr8_4 CDS 12606881 12607201 12606881 ID=Msa1314080-mRNA-1:cds;Parent=Msa1314080-mRNA-1
chr8_4 CDS 12606590 12606675 12606590 ID=Msa1314080-mRNA-1:cds;Parent=Msa1314080-mRNA-1
chr8_4 CDS 12606384 12606491 12606384 ID=Msa1314080-mRNA-1:cds;Parent=Msa1314080-mRNA-1
chr8_4 CDS 12605988 12606289 12605988 ID=Msa1314080-mRNA-1:cds;Parent=Msa1314080-mRNA-1
chr8_4 CDS 12605564 12605827 12605564 ID=Msa1314080-mRNA-1:cds;Parent=Msa1314080-mRNA-1
chr8_4 CDS 12604492 12605245 12604492 ID=Msa1314080-mRNA-1:cds;Parent=Msa1314080-mRNA-1
chr8_4 three_prime_UTR 12604153 12604491 12604153 ID=Msa1314080-mRNA-1:three_prime_utr;Parent=Msa1314080-mRNA-1
Gene Sequence

>Msa1314080

ATGTTGGGCATCTTTGACAAGGGCCAAAAAATCAAGGGCACTGTGGTGTTGATGCCCAAAAATGTTTTGGACTTCAACGCCATAACGTCCATCGGTAAAGGCGGTGTCCTCGACGCTGCCGGAAATTTGATCGGAGGAGTCACCAGCATTGTTGGTGGAGTTGTTGATACTGCCACTGCCTTCTTAGGCCGTAATGTCTCTATGCAGTTGATTAGTGCTACAAAGACTGATGCAAGTGGAAAGGGACTGGTTGGAAAGGAAACATTTTTGAGCAAACATCTACCACAGTTACCAACTTTGGGAGCAAGACAAGATGCATTCAGTATTTTCTTTGAATATGATGCTAATTTTGGAATCCCTGGAGCATTTTACATAAGAAATTATACACAAGCTGAGTTCTTCCTTGTCCGTGTGACCCTTGAAGATATTCCTAACCGTGGAAGTGTTCAATTTGATTGTAACTCATGGGTTTACAACTTCAAAAGCTACAAAAACAATCGCATCTTCTTCACCAATGATGCGTATCTTCCAAGTCAAACACCAGCTCCATTAAATCACTTTAGAGAAGAAGAGTTGCAGAATCTAAGAGGAGATGGAACTGGAGAACGCAAAGAATGGGATAGGATATACGATTATGATGTTTATAATGATCTCGGAAATCCAGATCGTGGCGACGCCCTTGTTCGTCCAATCCTTGGAGGATCTAGCACCCATCCCTACCCGCGCAGGGTTAGAAGTGGTAGAAAACCAACTAGAAAAGATCCTAAGAGTGAGAAACCGGGTGTGATTTATGTTCCAAGAGATGAAAATTTTGGTCACTTGAAGTCATCAGACTTCCTTATGTATGGAATAAAGTCATTGTCACAAGACGTCTTGCCTTTGTTACAATCTGTAATTTTTGATCTGAATTTCACCCCGAATGAGTTCGATAGCTTCGATGAAGTGCGCGGACTTTTCGAAGGTGGAATTAAGCTTCCAACAGATATAATTAGCCAAATCAGCCCCTTGCCAGCCCTTAAGGAAATCCTCCGCACCGATGGTGAACAAGCCCTTAAGTTTCCACCACCTCAAGTAATTAGAGTTAGCAAGTCTGCATGGAATACTGATGAAGAATTTGGAAGAGAGATGCTTGCTGGTGTAAATCCTAATGTGATTCGTCTTCTTCAAGAGTTCCCACCAAAAAGCACATTAGATGCCACTGTCTATGGTGATCAAAACAGTACAATAACAAAAGAACACTTAGAGACTAATCTTGGTGATATCACAGTAGAAGAGGCACTTAATGGAAAGAGATTATTCCTCTTAGATTACCATGATGCATTCATGCCATATTTGGAGAGGATAAATTTAAGTGCAAAAGCTTACGCTACAAGGACAATCTTGTTCTTGCAAGATGATGGGACTTTGAAGCCATTAGCCATCGAATTAAGTTTGCCACACTCAAATGGGGTCCAATATGGTGCTGAAAGCAAAGTATTCTTGCCTGCACACGAAGGTGTCGAAAGTACAATTTGGATGTTGGCAAAGGCTCATGTCATTGTAAATGACTCATGCTATCATCAACTCATGAGCCATTGGTTGAATACTCATGCAGTGATGGAACCATTCATCATAGCAACAAATAGACATCTAAGTGTGCTTCACCCAATTTATAAGCTTTTATTCCCCCATTACCGTGACACAATAAATATCAATGGACTTGCTCGACAAGCTCTCATCAATGCTGACGGCATTATAGAGCAAACATTTTGTCCGGGACCAAATTCCATTGAGATTTCTTCTGCAGTTTACAAGAATTGGGTTTTCACTGATCAAGCATTACCAGCTGATCTTATCAAGAGAGGATTAGCTGTTGAGGATCCATCTTCCCCTCATGGCCTTCGTCTTGTGATAGAGGACTACCCTTATGCCGTTGACGGACTAGAAATATGGGATGCTATTAAGGCATGGGTCCAAGACTATGTATCCTTATACTACCCAACAGATGAGGCAGTACAAATAGACACTGAAATTCAGAAATGGTGGAAGGAAGCTGTAGAAAAGGGTCATGGTGACTTGAAAGACAAGCCATGGTGGCCTAAGATGCAAACTGTTCAAGACTTGGTTCAATCTTGCTCCATTATTATATGGACAGCTTCTGCTCTTCATGCAGCTGTTAACTTCGGACAATATCCTTATGGAGGATATATCCTGAACCGTCCAACAATTAGTAGAAGATTTATTCCGGAGCCAGGAACTCCGGAATACGATGAGATGGTGAAAAGTCCTCAAAAGGCATATTTGAGAACTATTACACCAAAGTACCAAACCCTTGTTGATCTTTCTGTGATTGAGATATTGTCAAGACATGCGTCCGATGAAGTGTATCTTGGAGAGAATAATAACAAGTTTTGGACATCTGATACAAGGGCAGTTCAAGCCTTCCAAAAGTTTGGAAGCAAACTAGCTGAAATTGAAGGGAAAATTACCAAGAGGAACAATGAATCTAGTTTGAGAAACCGCACCGGACCAGTGCAATTGCCCTACACTTTGCTCCTTCGTTCGAGTGAAGAAGGTTTAACATTCAGAGGAATTCCCAACAGTATCTCTATTTAG
Protein sequence

>Msa1314080

MLGIFDKGQKIKGTVVLMPKNVLDFNAITSIGKGGVLDAAGNLIGGVTSIVGGVVDTATAFLGRNVSMQLISATKTDASGKGLVGKETFLSKHLPQLPTLGARQDAFSIFFEYDANFGIPGAFYIRNYTQAEFFLVRVTLEDIPNRGSVQFDCNSWVYNFKSYKNNRIFFTNDAYLPSQTPAPLNHFREEELQNLRGDGTGERKEWDRIYDYDVYNDLGNPDRGDALVRPILGGSSTHPYPRRVRSGRKPTRKDPKSEKPGVIYVPRDENFGHLKSSDFLMYGIKSLSQDVLPLLQSVIFDLNFTPNEFDSFDEVRGLFEGGIKLPTDIISQISPLPALKEILRTDGEQALKFPPPQVIRVSKSAWNTDEEFGREMLAGVNPNVIRLLQEFPPKSTLDATVYGDQNSTITKEHLETNLGDITVEEALNGKRLFLLDYHDAFMPYLERINLSAKAYATRTILFLQDDGTLKPLAIELSLPHSNGVQYGAESKVFLPAHEGVESTIWMLAKAHVIVNDSCYHQLMSHWLNTHAVMEPFIIATNRHLSVLHPIYKLLFPHYRDTININGLARQALINADGIIEQTFCPGPNSIEISSAVYKNWVFTDQALPADLIKRGLAVEDPSSPHGLRLVIEDYPYAVDGLEIWDAIKAWVQDYVSLYYPTDEAVQIDTEIQKWWKEAVEKGHGDLKDKPWWPKMQTVQDLVQSCSIIIWTASALHAAVNFGQYPYGGYILNRPTISRRFIPEPGTPEYDEMVKSPQKAYLRTITPKYQTLVDLSVIEILSRHASDEVYLGENNNKFWTSDTRAVQAFQKFGSKLAEIEGKITKRNNESSLRNRTGPVQLPYTLLLRSSEEGLTFRGIPNSISI*