Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1196080 | XP_013445823.1 | 88.095 | 294 | 24 | 4 | 1 | 291 | 1 | 286 | 4.08e-169 | 480 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1196080 | sp|Q02283|HAT5_ARATH | 61.682 | 107 | 41 | 0 | 92 | 198 | 66 | 172 | 6.63e-39 | 140 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1196080 | A0A072TQU2 | 88.095 | 294 | 24 | 4 | 1 | 291 | 1 | 286 | 1.95e-169 | 480 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1196080 | TF | HB-HD-ZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002930 | Msa1196080 | 0.807890 | 4.051986e-50 | -8.615850e-47 |
| Msa0016120 | Msa1196080 | 0.801535 | 8.602008e-49 | -8.615850e-47 |
| Msa0103000 | Msa1196080 | 0.802971 | 4.355708e-49 | -8.615850e-47 |
| Msa0106790 | Msa1196080 | 0.804411 | 2.188350e-49 | -8.615850e-47 |
| Msa0118380 | Msa1196080 | 0.828976 | 6.663215e-55 | -8.615850e-47 |
| Msa0118400 | Msa1196080 | 0.821127 | 4.762292e-53 | -8.615850e-47 |
| Msa0682530 | Msa1196080 | 0.802160 | 6.401393e-49 | -8.615850e-47 |
| Msa0685330 | Msa1196080 | 0.805700 | 1.176088e-49 | -8.615850e-47 |
| Msa0833040 | Msa1196080 | 0.800121 | 1.672274e-48 | -8.615850e-47 |
| Msa0147560 | Msa1196080 | 0.818193 | 2.226753e-52 | -8.615850e-47 |
| Msa0161680 | Msa1196080 | 0.808177 | 3.520755e-50 | -8.615850e-47 |
| Msa0378500 | Msa1196080 | 0.806826 | 6.811243e-50 | -8.615850e-47 |
| Msa0436500 | Msa1196080 | 0.820712 | 5.932740e-53 | -8.615850e-47 |
| Msa1041530 | Msa1196080 | 0.802345 | 5.864386e-49 | -8.615850e-47 |
| Msa0329620 | Msa1196080 | 0.812908 | 3.345812e-51 | -8.615850e-47 |
| Msa0337850 | Msa1196080 | 0.807699 | 4.449531e-50 | -8.615850e-47 |
| Msa1196080 | Msa1248040 | 0.900798 | 5.108902e-78 | -8.615850e-47 |
| Msa1196080 | Msa1289070 | 0.812035 | 5.190043e-51 | -8.615850e-47 |
| Msa1196080 | Msa1378770 | 0.810118 | 1.351517e-50 | -8.615850e-47 |
| Msa1196080 | Msa1420060 | 0.803213 | 3.879961e-49 | -8.615850e-47 |
| Msa1196080 | Msa1424690 | 0.803619 | 3.197828e-49 | -8.615850e-47 |
| Msa1196080 | Msa1455590 | 0.817402 | 3.359720e-52 | -8.615850e-47 |
| Msa0867350 | Msa1196080 | 0.815961 | 7.070226e-52 | -8.615850e-47 |
| Msa0885060 | Msa1196080 | 0.831311 | 1.793354e-55 | -8.615850e-47 |
| Msa0898730 | Msa1196080 | 0.803100 | 4.095667e-49 | -8.615850e-47 |
| Msa0911990 | Msa1196080 | 0.814193 | 1.745083e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1196080 | MtrunA17_Chr8g0362751 | 88.095 | 294 | 24 | 4 | 1 | 291 | 1 | 286 | 3.75e-173 | 480 |
| Msa1196080 | MtrunA17_Chr5g0415941 | 53.412 | 337 | 98 | 11 | 1 | 291 | 1 | 324 | 2.30e-98 | 291 |
| Msa1196080 | MtrunA17_Chr4g0060031 | 40.785 | 331 | 139 | 8 | 10 | 291 | 15 | 337 | 3.06e-56 | 184 |
| Msa1196080 | MtrunA17_Chr6g0450991 | 68.687 | 99 | 31 | 0 | 92 | 190 | 65 | 163 | 5.72e-40 | 140 |
| Msa1196080 | MtrunA17_Chr8g0381741 | 46.386 | 166 | 66 | 4 | 86 | 231 | 45 | 207 | 9.57e-38 | 135 |
| Msa1196080 | MtrunA17_Chr3g0123691 | 57.895 | 114 | 48 | 0 | 90 | 203 | 56 | 169 | 1.42e-36 | 132 |
| Msa1196080 | MtrunA17_Chr5g0416391 | 55.303 | 132 | 55 | 3 | 60 | 189 | 43 | 172 | 2.42e-35 | 128 |
| Msa1196080 | MtrunA17_Chr8g0362151 | 52.239 | 134 | 62 | 1 | 56 | 189 | 41 | 172 | 6.63e-35 | 127 |
| Msa1196080 | MtrunA17_Chr3g0119291 | 55.462 | 119 | 50 | 1 | 94 | 212 | 59 | 174 | 2.42e-34 | 125 |
| Msa1196080 | MtrunA17_Chr6g0453021 | 59.649 | 114 | 45 | 1 | 77 | 189 | 78 | 191 | 3.73e-34 | 125 |
| Msa1196080 | MtrunA17_Chr7g0217111 | 57.292 | 96 | 41 | 0 | 94 | 189 | 80 | 175 | 8.44e-26 | 103 |
| Msa1196080 | MtrunA17_Chr7g0265521 | 51.546 | 97 | 40 | 1 | 94 | 190 | 63 | 152 | 1.75e-24 | 98.6 |
| Msa1196080 | MtrunA17_Chr8g0346251 | 37.640 | 178 | 88 | 6 | 98 | 269 | 45 | 205 | 1.94e-24 | 99.0 |
| Msa1196080 | MtrunA17_Chr3g0127511 | 52.747 | 91 | 43 | 0 | 96 | 186 | 40 | 130 | 1.61e-23 | 96.3 |
| Msa1196080 | MtrunA17_Chr1g0179581 | 59.722 | 72 | 29 | 0 | 94 | 165 | 28 | 99 | 5.37e-23 | 91.3 |
| Msa1196080 | MtrunA17_Chr5g0403701 | 58.571 | 70 | 29 | 0 | 94 | 163 | 53 | 122 | 3.86e-19 | 83.6 |
| Msa1196080 | MtrunA17_Chr5g0403691 | 58.571 | 70 | 29 | 0 | 94 | 163 | 53 | 122 | 1.18e-18 | 82.8 |
| Msa1196080 | MtrunA17_Chr4g0071411 | 47.253 | 91 | 41 | 1 | 97 | 187 | 91 | 174 | 7.85e-18 | 80.5 |
| Msa1196080 | MtrunA17_Chr4g0055851 | 42.735 | 117 | 58 | 2 | 73 | 187 | 97 | 206 | 1.37e-17 | 80.9 |
| Msa1196080 | MtrunA17_Chr7g0258831 | 39.231 | 130 | 64 | 3 | 58 | 187 | 132 | 246 | 3.78e-17 | 79.7 |
| Msa1196080 | MtrunA17_Chr1g0175651 | 42.241 | 116 | 55 | 2 | 72 | 187 | 137 | 240 | 2.06e-16 | 77.8 |
| Msa1196080 | MtrunA17_Chr1g0151971 | 46.875 | 96 | 44 | 1 | 92 | 187 | 128 | 216 | 3.43e-16 | 77.0 |
| Msa1196080 | MtrunA17_Chr5g0400781 | 45.745 | 94 | 44 | 1 | 94 | 187 | 123 | 209 | 6.41e-16 | 75.9 |
| Msa1196080 | MtrunA17_Chr5g0399491 | 41.880 | 117 | 57 | 2 | 71 | 187 | 117 | 222 | 1.35e-15 | 75.5 |
| Msa1196080 | MtrunA17_Chr4g0054421 | 43.519 | 108 | 51 | 2 | 80 | 187 | 116 | 213 | 1.38e-15 | 75.1 |
| Msa1196080 | MtrunA17_Chr4g0044091 | 43.750 | 96 | 47 | 1 | 92 | 187 | 63 | 151 | 1.51e-15 | 73.6 |
| Msa1196080 | MtrunA17_Chr2g0308611 | 39.474 | 114 | 62 | 1 | 74 | 187 | 180 | 286 | 2.88e-15 | 75.1 |
| Msa1196080 | MtrunA17_Chr8g0335131 | 45.745 | 94 | 44 | 1 | 94 | 187 | 146 | 232 | 9.82e-15 | 73.2 |
| Msa1196080 | MtrunA17_Chr3g0135331 | 50.000 | 72 | 36 | 0 | 94 | 165 | 145 | 216 | 2.31e-13 | 69.3 |
| Msa1196080 | MtrunA17_Chr2g0299031 | 41.489 | 94 | 48 | 1 | 94 | 187 | 82 | 168 | 6.00e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1196080 | AT3G01470.1 | 61.682 | 107 | 41 | 0 | 92 | 198 | 66 | 172 | 6.74e-40 | 140 |
| Msa1196080 | AT4G40060.1 | 49.660 | 147 | 65 | 3 | 83 | 223 | 45 | 188 | 7.17e-37 | 133 |
| Msa1196080 | AT2G22430.1 | 64.948 | 97 | 34 | 0 | 94 | 190 | 62 | 158 | 1.17e-35 | 130 |
| Msa1196080 | AT1G69780.1 | 57.265 | 117 | 49 | 1 | 74 | 189 | 64 | 180 | 4.19e-35 | 128 |
| Msa1196080 | AT5G15150.1 | 56.897 | 116 | 46 | 1 | 74 | 189 | 99 | 210 | 1.28e-34 | 127 |
| Msa1196080 | AT5G65310.2 | 63.918 | 97 | 35 | 0 | 94 | 190 | 54 | 150 | 2.56e-34 | 126 |
| Msa1196080 | AT5G65310.1 | 63.918 | 97 | 35 | 0 | 94 | 190 | 72 | 168 | 3.39e-34 | 126 |
| Msa1196080 | AT3G01220.1 | 52.101 | 119 | 53 | 1 | 94 | 212 | 87 | 201 | 4.15e-31 | 117 |
| Msa1196080 | AT1G27045.1 | 42.857 | 168 | 73 | 2 | 39 | 206 | 32 | 176 | 4.30e-31 | 116 |
| Msa1196080 | AT1G27045.5 | 50.781 | 128 | 59 | 1 | 79 | 206 | 10 | 133 | 4.31e-31 | 115 |
| Msa1196080 | AT1G27045.3 | 50.781 | 128 | 59 | 1 | 79 | 206 | 10 | 133 | 4.31e-31 | 115 |
| Msa1196080 | AT1G27045.2 | 54.464 | 112 | 51 | 0 | 79 | 190 | 2 | 113 | 5.08e-31 | 114 |
| Msa1196080 | AT1G27045.4 | 44.828 | 145 | 61 | 1 | 39 | 183 | 32 | 157 | 2.03e-29 | 112 |
| Msa1196080 | AT1G26960.1 | 52.174 | 115 | 54 | 1 | 76 | 189 | 52 | 166 | 5.15e-28 | 108 |
| Msa1196080 | AT2G46680.1 | 48.182 | 110 | 57 | 0 | 88 | 197 | 26 | 135 | 1.33e-25 | 102 |
| Msa1196080 | AT2G46680.2 | 50.515 | 97 | 48 | 0 | 88 | 184 | 26 | 122 | 2.81e-24 | 99.0 |
| Msa1196080 | AT3G61890.1 | 50.495 | 101 | 49 | 1 | 97 | 197 | 33 | 132 | 3.97e-24 | 98.2 |
| Msa1196080 | AT4G36740.1 | 48.182 | 110 | 50 | 1 | 94 | 203 | 55 | 157 | 5.59e-23 | 94.7 |
| Msa1196080 | AT4G36740.2 | 48.182 | 110 | 50 | 1 | 94 | 203 | 56 | 158 | 5.83e-23 | 94.7 |
| Msa1196080 | AT5G03790.1 | 54.023 | 87 | 40 | 0 | 94 | 180 | 77 | 163 | 9.35e-23 | 94.4 |
| Msa1196080 | AT5G03790.2 | 59.722 | 72 | 29 | 0 | 94 | 165 | 77 | 148 | 6.78e-22 | 91.3 |
| Msa1196080 | AT2G36610.1 | 46.667 | 105 | 41 | 2 | 91 | 187 | 68 | 165 | 2.86e-21 | 89.4 |
| Msa1196080 | AT5G66700.1 | 58.571 | 70 | 29 | 0 | 94 | 163 | 71 | 140 | 6.19e-21 | 89.4 |
| Msa1196080 | AT2G18550.1 | 45.455 | 110 | 53 | 1 | 94 | 203 | 61 | 163 | 6.60e-21 | 89.0 |
| Msa1196080 | AT5G06710.1 | 43.750 | 112 | 51 | 2 | 76 | 187 | 177 | 276 | 6.86e-18 | 82.8 |
| Msa1196080 | AT5G53980.1 | 41.837 | 98 | 57 | 0 | 94 | 191 | 11 | 108 | 3.66e-17 | 77.4 |
| Msa1196080 | AT4G37790.1 | 42.857 | 112 | 52 | 2 | 76 | 187 | 113 | 212 | 3.93e-17 | 80.1 |
| Msa1196080 | AT5G47370.1 | 41.284 | 109 | 53 | 2 | 79 | 187 | 119 | 216 | 5.30e-15 | 73.9 |
| Msa1196080 | AT2G22800.1 | 45.745 | 94 | 44 | 1 | 94 | 187 | 113 | 199 | 7.43e-15 | 73.6 |
| Msa1196080 | AT2G01430.1 | 39.640 | 111 | 60 | 1 | 77 | 187 | 122 | 225 | 9.59e-15 | 73.2 |
| Msa1196080 | AT2G44910.1 | 45.745 | 94 | 44 | 1 | 94 | 187 | 163 | 249 | 1.18e-14 | 73.6 |
| Msa1196080 | AT4G17460.1 | 40.870 | 115 | 58 | 3 | 80 | 193 | 123 | 228 | 2.32e-14 | 72.0 |
| Msa1196080 | AT4G16780.1 | 40.541 | 111 | 52 | 2 | 77 | 187 | 119 | 215 | 2.59e-14 | 72.0 |
| Msa1196080 | AT3G60390.1 | 44.681 | 94 | 45 | 1 | 94 | 187 | 162 | 248 | 2.84e-14 | 72.4 |
| Msa1196080 | AT5G06710.4 | 49.296 | 71 | 31 | 1 | 76 | 146 | 177 | 242 | 2.57e-13 | 68.9 |
| Msa1196080 | AT2G01430.2 | 44.286 | 70 | 39 | 0 | 77 | 146 | 122 | 191 | 1.79e-11 | 62.8 |
| Msa1196080 | AT1G70920.1 | 42.553 | 94 | 47 | 1 | 94 | 187 | 69 | 155 | 3.81e-11 | 62.0 |
| Msa1196080 | AT1G70920.2 | 43.023 | 86 | 42 | 1 | 94 | 172 | 39 | 124 | 4.13e-11 | 61.2 |
Find 60 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAATCTTGCTCTCCTATTT+TGG | 0.157164 | 8_1:+44753361 | None:intergenic |
| GTCAGATGTGAATAAATTTA+AGG | 0.209841 | 8_1:+44754517 | None:intergenic |
| TGATAATAAACTTAGCTTAA+AGG | 0.225467 | 8_1:+44754359 | None:intergenic |
| TTATTAACATTTATTGCTTT+TGG | 0.253548 | 8_1:+44752250 | None:intergenic |
| GCAAGTTGAACTTTCCTTCC+AGG | 0.262711 | 8_1:+44753426 | None:intergenic |
| CATCCAACATCTTCAACTTT+TGG | 0.274660 | 8_1:+44752399 | None:intergenic |
| TGGCTATATGGTTCCAAAAT+AGG | 0.286402 | 8_1:-44753374 | Msa1196080:CDS |
| ATGGAACAGTCAAGAGGTTT+TGG | 0.294494 | 8_1:+44752427 | None:intergenic |
| GGATTCAGGTTCCAATTCTA+TGG | 0.296135 | 8_1:-44753646 | Msa1196080:CDS |
| CACAACATCAACCATAGAAT+TGG | 0.343400 | 8_1:+44753635 | None:intergenic |
| GATAATAAACTTAGCTTAAA+GGG | 0.351625 | 8_1:+44754360 | None:intergenic |
| TTTCAAGAAAATGAACTTGT+TGG | 0.363914 | 8_1:+44753478 | None:intergenic |
| AGCCAAGACAAGTGGCTATA+TGG | 0.377381 | 8_1:-44753386 | Msa1196080:CDS |
| GTGAATAAATTTAAGGGCAG+AGG | 0.391942 | 8_1:+44754524 | None:intergenic |
| TGAGCTCGTCAACTCTCTCT+TGG | 0.402549 | 8_1:-44754236 | Msa1196080:CDS |
| TGTGAAAATTCTGACTGGTT+TGG | 0.408830 | 8_1:+44752471 | None:intergenic |
| CTGGTTTGGTTCCACAACTA+AGG | 0.419648 | 8_1:+44752485 | None:intergenic |
| ATGGTTGATGTTGTGAATGT+TGG | 0.424290 | 8_1:-44753627 | Msa1196080:CDS |
| TATTTCTCTCAAGAAAAGAT+TGG | 0.446084 | 8_1:-44752625 | Msa1196080:CDS |
| TCAGATGTGAATAAATTTAA+GGG | 0.450365 | 8_1:+44754518 | None:intergenic |
| TAAGAAGTGGCATAGGGATA+AGG | 0.454320 | 8_1:+44754394 | None:intergenic |
| GGTTTCCATCAGTGTTCTGT+AGG | 0.464695 | 8_1:+44752511 | None:intergenic |
| TTTGTGAGAGTGAGGGACAT+AGG | 0.466108 | 8_1:+44754482 | None:intergenic |
| ATACCAAAAGTTGAAGATGT+TGG | 0.475759 | 8_1:-44752402 | Msa1196080:CDS |
| AAACAGCTAGAAAAGGACTA+TGG | 0.477186 | 8_1:-44753333 | Msa1196080:CDS |
| CATCTTGTGAAAATTCTGAC+TGG | 0.483181 | 8_1:+44752466 | None:intergenic |
| AATGAATCACCTTGACAAGA+AGG | 0.485040 | 8_1:+44754193 | None:intergenic |
| AACCATATAGCCACTTGTCT+TGG | 0.489367 | 8_1:+44753384 | None:intergenic |
| ATAGAAAACAAGCTTGAACC+TGG | 0.511077 | 8_1:-44753444 | Msa1196080:CDS |
| ATTCAATTAAGAAGTGGCAT+AGG | 0.511466 | 8_1:+44754387 | None:intergenic |
| CAAAACAAAACAGCTAGAAA+AGG | 0.514734 | 8_1:-44753340 | Msa1196080:CDS |
| TGCACCAACCAGGTAAGAAA+AGG | 0.516937 | 8_1:-44753512 | Msa1196080:CDS |
| TTGGTTCCACAACTAAGGAT+TGG | 0.517249 | 8_1:+44752490 | None:intergenic |
| TTTGTGAAATGATATCATCA+AGG | 0.518295 | 8_1:+44752562 | None:intergenic |
| TTGTGAAATGATATCATCAA+GGG | 0.525597 | 8_1:+44752563 | None:intergenic |
| AGCTCAAAACCTTCTTGTCA+AGG | 0.547348 | 8_1:-44754202 | Msa1196080:intron |
| TTCAATTAAGAAGTGGCATA+GGG | 0.547972 | 8_1:+44754388 | None:intergenic |
| AAATTAATGGCTAGAGCAGA+AGG | 0.553608 | 8_1:+44754434 | None:intergenic |
| AAACAACAAATTAAAAGAAG+AGG | 0.565427 | 8_1:-44753253 | Msa1196080:intron |
| GTTGTGAATGTTGGTGACAT+GGG | 0.567777 | 8_1:-44753618 | Msa1196080:CDS |
| GAATGCCTACAGAACACTGA+TGG | 0.567809 | 8_1:-44752516 | Msa1196080:CDS |
| TGAATAAATTTAAGGGCAGA+GGG | 0.584848 | 8_1:+44754525 | None:intergenic |
| TGTTGTGAATGTTGGTGACA+TGG | 0.586351 | 8_1:-44753619 | Msa1196080:CDS |
| GAGGTGAGCTTGCACCAACC+AGG | 0.587649 | 8_1:-44753522 | Msa1196080:CDS |
| AAAACAAGCTTGAACCTGGA+AGG | 0.588635 | 8_1:-44753440 | Msa1196080:CDS |
| GGTCATATTCAATTAAGAAG+TGG | 0.593552 | 8_1:+44754381 | None:intergenic |
| TACTAGTGGAATGTTAATGT+TGG | 0.596082 | 8_1:-44752289 | Msa1196080:three_prime_UTR |
| TAGCTTGCAGCCAAGACAAG+TGG | 0.597298 | 8_1:-44753394 | Msa1196080:CDS |
| TATTGAGTCAGTACTACTAG+TGG | 0.599266 | 8_1:-44752303 | Msa1196080:exon |
| TGGAAACCAATCCTTAGTTG+TGG | 0.606983 | 8_1:-44752496 | Msa1196080:CDS |
| AAGGAAAGTTCAACTTGCAA+AGG | 0.607696 | 8_1:-44753421 | Msa1196080:CDS |
| GGCTAGAGCAGAAGGTAGTG+AGG | 0.611810 | 8_1:+44754442 | None:intergenic |
| ACCAACCAGGTAAGAAAAGG+AGG | 0.621874 | 8_1:-44753509 | Msa1196080:CDS |
| GTATGAATGGAACAGTCAAG+AGG | 0.643567 | 8_1:+44752421 | None:intergenic |
| ATGTGGAATTTGTGAGAGTG+AGG | 0.645792 | 8_1:+44754474 | None:intergenic |
| TAGTGAGGAATAATGCAATG+TGG | 0.648041 | 8_1:+44754457 | None:intergenic |
| AAGCTACAGCAACTTTCATG+TGG | 0.654541 | 8_1:+44752366 | None:intergenic |
| TGATGATGATGAGAACTATG+AGG | 0.658523 | 8_1:-44753541 | Msa1196080:CDS |
| AAGGGCAGAGGGTAGTCATG+TGG | 0.677249 | 8_1:+44754536 | None:intergenic |
| TGTGGAATTTGTGAGAGTGA+GGG | 0.704329 | 8_1:+44754475 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGTTTGATAAAAAATTAA+TGG | + | chr8_1:44752298-44752317 | None:intergenic | 10.0% |
| !! | TTTGTTTGATAAAAAATTAA+TGG | + | chr8_1:44752298-44752317 | None:intergenic | 10.0% |
| !!! | ATACAAAGTTACATTTTTTT+AGG | - | chr8_1:44753044-44753063 | Msa1196080:intron | 15.0% |
| !!! | TTATTAACATTTATTGCTTT+TGG | + | chr8_1:44754469-44754488 | None:intergenic | 15.0% |
| !!! | ATACAAAGTTACATTTTTTT+AGG | - | chr8_1:44753044-44753063 | Msa1196080:intron | 15.0% |
| !!! | TTATTAACATTTATTGCTTT+TGG | + | chr8_1:44754469-44754488 | None:intergenic | 15.0% |
| !! | TCAGATGTGAATAAATTTAA+GGG | + | chr8_1:44752201-44752220 | None:intergenic | 20.0% |
| !! | GATAATAAACTTAGCTTAAA+GGG | + | chr8_1:44752359-44752378 | None:intergenic | 20.0% |
| !! | TGATAATAAACTTAGCTTAA+AGG | + | chr8_1:44752360-44752379 | None:intergenic | 20.0% |
| !! | TATTGTGATTCTTTAATTGA+CGG | + | chr8_1:44752837-44752856 | None:intergenic | 20.0% |
| !!! | AAACATCATCTTTTAAAACA+AGG | + | chr8_1:44752977-44752996 | None:intergenic | 20.0% |
| !!! | ATTCAATCTTGATTTTTCAT+CGG | + | chr8_1:44753001-44753020 | None:intergenic | 20.0% |
| !! | AAACAACAAATTAAAAGAAG+AGG | - | chr8_1:44753463-44753482 | Msa1196080:CDS | 20.0% |
| !!! | CAAGCTTAATCTATTTTTAT+CGG | - | chr8_1:44753802-44753821 | Msa1196080:intron | 20.0% |
| !!! | ATATAATTTTATCCCACTAA+TGG | - | chr8_1:44754030-44754049 | Msa1196080:intron | 20.0% |
| !!! | TAATGGTAAGTGATTAATTT+TGG | - | chr8_1:44754047-44754066 | Msa1196080:intron | 20.0% |
| !!! | TATTTTCCTCTTTTTTTCTT+GGG | + | chr8_1:44754118-44754137 | None:intergenic | 20.0% |
| !!! | TTATTTTCCTCTTTTTTTCT+TGG | + | chr8_1:44754119-44754138 | None:intergenic | 20.0% |
| !! | TTCACAAAATAAAAATGATG+TGG | - | chr8_1:44754169-44754188 | Msa1196080:intron | 20.0% |
| !! | AAAAAGTTTGATCTTCAAAT+GGG | + | chr8_1:44754382-44754401 | None:intergenic | 20.0% |
| !! | TAAAAAGTTTGATCTTCAAA+TGG | + | chr8_1:44754383-44754402 | None:intergenic | 20.0% |
| !!! | AAGATCAAACTTTTTACTTT+TGG | - | chr8_1:44754387-44754406 | Msa1196080:five_prime_UTR | 20.0% |
| !! | TCAGATGTGAATAAATTTAA+GGG | + | chr8_1:44752201-44752220 | None:intergenic | 20.0% |
| !! | GATAATAAACTTAGCTTAAA+GGG | + | chr8_1:44752359-44752378 | None:intergenic | 20.0% |
| !! | TGATAATAAACTTAGCTTAA+AGG | + | chr8_1:44752360-44752379 | None:intergenic | 20.0% |
| !! | TATTGTGATTCTTTAATTGA+CGG | + | chr8_1:44752837-44752856 | None:intergenic | 20.0% |
| !!! | AAACATCATCTTTTAAAACA+AGG | + | chr8_1:44752977-44752996 | None:intergenic | 20.0% |
| !!! | ATTCAATCTTGATTTTTCAT+CGG | + | chr8_1:44753001-44753020 | None:intergenic | 20.0% |
| !! | AAACAACAAATTAAAAGAAG+AGG | - | chr8_1:44753463-44753482 | Msa1196080:CDS | 20.0% |
| !!! | CAAGCTTAATCTATTTTTAT+CGG | - | chr8_1:44753802-44753821 | Msa1196080:intron | 20.0% |
| !!! | ATATAATTTTATCCCACTAA+TGG | - | chr8_1:44754030-44754049 | Msa1196080:intron | 20.0% |
| !!! | TAATGGTAAGTGATTAATTT+TGG | - | chr8_1:44754047-44754066 | Msa1196080:intron | 20.0% |
| !!! | TATTTTCCTCTTTTTTTCTT+GGG | + | chr8_1:44754118-44754137 | None:intergenic | 20.0% |
| !!! | TTATTTTCCTCTTTTTTTCT+TGG | + | chr8_1:44754119-44754138 | None:intergenic | 20.0% |
| !! | TTCACAAAATAAAAATGATG+TGG | - | chr8_1:44754169-44754188 | Msa1196080:intron | 20.0% |
| !! | AAAAAGTTTGATCTTCAAAT+GGG | + | chr8_1:44754382-44754401 | None:intergenic | 20.0% |
| !! | TAAAAAGTTTGATCTTCAAA+TGG | + | chr8_1:44754383-44754402 | None:intergenic | 20.0% |
| !!! | AAGATCAAACTTTTTACTTT+TGG | - | chr8_1:44754387-44754406 | Msa1196080:five_prime_UTR | 20.0% |
| ! | GTCAGATGTGAATAAATTTA+AGG | + | chr8_1:44752202-44752221 | None:intergenic | 25.0% |
| !!! | TAGTAGCATAAATTTTGATC+AGG | - | chr8_1:44752384-44752403 | Msa1196080:CDS | 25.0% |
| !! | TTGACAAAAGCTACATTTTA+GGG | + | chr8_1:44752779-44752798 | None:intergenic | 25.0% |
| !! | TTTGACAAAAGCTACATTTT+AGG | + | chr8_1:44752780-44752799 | None:intergenic | 25.0% |
| !! | AGCTTTTGTCAAAATTAAAG+TGG | - | chr8_1:44752787-44752806 | Msa1196080:intron | 25.0% |
| ! | TGTTTCCATTATAAATTTCC+CGG | - | chr8_1:44752918-44752937 | Msa1196080:intron | 25.0% |
| !!! | AAGTTACATTTTTTTAGGCT+TGG | - | chr8_1:44753049-44753068 | Msa1196080:intron | 25.0% |
| ! | TTTCAAGAAAATGAACTTGT+TGG | + | chr8_1:44753241-44753260 | None:intergenic | 25.0% |
| !! | AACAAGTTCATTTTCTTGAA+AGG | - | chr8_1:44753240-44753259 | Msa1196080:intron | 25.0% |
| !!! | ATCTATTTTTATCGGTCATT+TGG | - | chr8_1:44753810-44753829 | Msa1196080:intron | 25.0% |
| !! | CAAATTTTACATTTTGCACA+GGG | + | chr8_1:44753908-44753927 | None:intergenic | 25.0% |
| !! | ACAAATTTTACATTTTGCAC+AGG | + | chr8_1:44753909-44753928 | None:intergenic | 25.0% |
| !! | TGTTAATGTTGATAAGTTCT+TGG | + | chr8_1:44753945-44753964 | None:intergenic | 25.0% |
| ! | ATTAATCACTTACCATTAGT+GGG | + | chr8_1:44754045-44754064 | None:intergenic | 25.0% |
| ! | AATTAATCACTTACCATTAG+TGG | + | chr8_1:44754046-44754065 | None:intergenic | 25.0% |
| ! | TATTTCTCTCAAGAAAAGAT+TGG | - | chr8_1:44754091-44754110 | Msa1196080:intron | 25.0% |
| ! | TTGTGAAATGATATCATCAA+GGG | + | chr8_1:44754156-44754175 | None:intergenic | 25.0% |
| ! | TTTGTGAAATGATATCATCA+AGG | + | chr8_1:44754157-44754176 | None:intergenic | 25.0% |
| ! | GTCAGATGTGAATAAATTTA+AGG | + | chr8_1:44752202-44752221 | None:intergenic | 25.0% |
| !!! | TAGTAGCATAAATTTTGATC+AGG | - | chr8_1:44752384-44752403 | Msa1196080:CDS | 25.0% |
| !! | TTGACAAAAGCTACATTTTA+GGG | + | chr8_1:44752779-44752798 | None:intergenic | 25.0% |
| !! | TTTGACAAAAGCTACATTTT+AGG | + | chr8_1:44752780-44752799 | None:intergenic | 25.0% |
| !! | AGCTTTTGTCAAAATTAAAG+TGG | - | chr8_1:44752787-44752806 | Msa1196080:intron | 25.0% |
| ! | TGTTTCCATTATAAATTTCC+CGG | - | chr8_1:44752918-44752937 | Msa1196080:intron | 25.0% |
| !!! | AAGTTACATTTTTTTAGGCT+TGG | - | chr8_1:44753049-44753068 | Msa1196080:intron | 25.0% |
| ! | TTTCAAGAAAATGAACTTGT+TGG | + | chr8_1:44753241-44753260 | None:intergenic | 25.0% |
| !! | AACAAGTTCATTTTCTTGAA+AGG | - | chr8_1:44753240-44753259 | Msa1196080:intron | 25.0% |
| !!! | ATCTATTTTTATCGGTCATT+TGG | - | chr8_1:44753810-44753829 | Msa1196080:intron | 25.0% |
| !! | CAAATTTTACATTTTGCACA+GGG | + | chr8_1:44753908-44753927 | None:intergenic | 25.0% |
| !! | ACAAATTTTACATTTTGCAC+AGG | + | chr8_1:44753909-44753928 | None:intergenic | 25.0% |
| !! | TGTTAATGTTGATAAGTTCT+TGG | + | chr8_1:44753945-44753964 | None:intergenic | 25.0% |
| ! | ATTAATCACTTACCATTAGT+GGG | + | chr8_1:44754045-44754064 | None:intergenic | 25.0% |
| ! | AATTAATCACTTACCATTAG+TGG | + | chr8_1:44754046-44754065 | None:intergenic | 25.0% |
| ! | TATTTCTCTCAAGAAAAGAT+TGG | - | chr8_1:44754091-44754110 | Msa1196080:intron | 25.0% |
| ! | TTGTGAAATGATATCATCAA+GGG | + | chr8_1:44754156-44754175 | None:intergenic | 25.0% |
| ! | TTTGTGAAATGATATCATCA+AGG | + | chr8_1:44754157-44754176 | None:intergenic | 25.0% |
| TGAATAAATTTAAGGGCAGA+GGG | + | chr8_1:44752194-44752213 | None:intergenic | 30.0% | |
| TTCAATTAAGAAGTGGCATA+GGG | + | chr8_1:44752331-44752350 | None:intergenic | 30.0% | |
| ATTCAATTAAGAAGTGGCAT+AGG | + | chr8_1:44752332-44752351 | None:intergenic | 30.0% | |
| GGTCATATTCAATTAAGAAG+TGG | + | chr8_1:44752338-44752357 | None:intergenic | 30.0% | |
| !! | CATAAATTTTGATCAGGCTA+TGG | - | chr8_1:44752390-44752409 | Msa1196080:CDS | 30.0% |
| ! | TGCAGATGAAGTTTTCTTTT+TGG | - | chr8_1:44752635-44752654 | Msa1196080:intron | 30.0% |
| AAACAGAAGTTGGATTCTTA+TGG | - | chr8_1:44752662-44752681 | Msa1196080:intron | 30.0% | |
| ! | TTAGTGCATGTTTGAAATCA+GGG | - | chr8_1:44752732-44752751 | Msa1196080:intron | 30.0% |
| !!! | ATTTTTTTAGGCTTGGATTC+AGG | - | chr8_1:44753056-44753075 | Msa1196080:intron | 30.0% |
| CAAAACAAAACAGCTAGAAA+AGG | - | chr8_1:44753376-44753395 | Msa1196080:CDS | 30.0% | |
| TGGTACAACTTTCTTATTAC+AGG | - | chr8_1:44754067-44754086 | Msa1196080:intron | 30.0% | |
| ! | TCTTCAACTTTTGGTATGAA+TGG | + | chr8_1:44754311-44754330 | None:intergenic | 30.0% |
| ATACCAAAAGTTGAAGATGT+TGG | - | chr8_1:44754314-44754333 | Msa1196080:exon | 30.0% | |
| TACTAGTGGAATGTTAATGT+TGG | - | chr8_1:44754427-44754446 | Msa1196080:five_prime_UTR | 30.0% | |
| TGAATAAATTTAAGGGCAGA+GGG | + | chr8_1:44752194-44752213 | None:intergenic | 30.0% | |
| TTCAATTAAGAAGTGGCATA+GGG | + | chr8_1:44752331-44752350 | None:intergenic | 30.0% | |
| ATTCAATTAAGAAGTGGCAT+AGG | + | chr8_1:44752332-44752351 | None:intergenic | 30.0% | |
| GGTCATATTCAATTAAGAAG+TGG | + | chr8_1:44752338-44752357 | None:intergenic | 30.0% | |
| !! | CATAAATTTTGATCAGGCTA+TGG | - | chr8_1:44752390-44752409 | Msa1196080:CDS | 30.0% |
| ! | TGCAGATGAAGTTTTCTTTT+TGG | - | chr8_1:44752635-44752654 | Msa1196080:intron | 30.0% |
| AAACAGAAGTTGGATTCTTA+TGG | - | chr8_1:44752662-44752681 | Msa1196080:intron | 30.0% | |
| ! | TTAGTGCATGTTTGAAATCA+GGG | - | chr8_1:44752732-44752751 | Msa1196080:intron | 30.0% |
| !!! | ATTTTTTTAGGCTTGGATTC+AGG | - | chr8_1:44753056-44753075 | Msa1196080:intron | 30.0% |
| CAAAACAAAACAGCTAGAAA+AGG | - | chr8_1:44753376-44753395 | Msa1196080:CDS | 30.0% | |
| TGGTACAACTTTCTTATTAC+AGG | - | chr8_1:44754067-44754086 | Msa1196080:intron | 30.0% | |
| ! | TCTTCAACTTTTGGTATGAA+TGG | + | chr8_1:44754311-44754330 | None:intergenic | 30.0% |
| ATACCAAAAGTTGAAGATGT+TGG | - | chr8_1:44754314-44754333 | Msa1196080:exon | 30.0% | |
| TACTAGTGGAATGTTAATGT+TGG | - | chr8_1:44754427-44754446 | Msa1196080:five_prime_UTR | 30.0% | |
| GTGAATAAATTTAAGGGCAG+AGG | + | chr8_1:44752195-44752214 | None:intergenic | 35.0% | |
| TAGTGAGGAATAATGCAATG+TGG | + | chr8_1:44752262-44752281 | None:intergenic | 35.0% | |
| AAATTAATGGCTAGAGCAGA+AGG | + | chr8_1:44752285-44752304 | None:intergenic | 35.0% | |
| AATGAATCACCTTGACAAGA+AGG | + | chr8_1:44752526-44752545 | None:intergenic | 35.0% | |
| CAACAATCAAGAAGCTACAA+AGG | + | chr8_1:44752550-44752569 | None:intergenic | 35.0% | |
| ! | TTTTGGTCGAAAACAGAAGT+TGG | - | chr8_1:44752652-44752671 | Msa1196080:intron | 35.0% |
| ! | CAAACATGCACTAAGTATTG+TGG | + | chr8_1:44752726-44752745 | None:intergenic | 35.0% |
| ! | CTTAGTGCATGTTTGAAATC+AGG | - | chr8_1:44752731-44752750 | Msa1196080:intron | 35.0% |
| GTAGTAAAATGTAGCCGATA+TGG | - | chr8_1:44752869-44752888 | Msa1196080:intron | 35.0% | |
| AAAATGTAGCCGATATGGTT+CGG | - | chr8_1:44752874-44752893 | Msa1196080:intron | 35.0% | |
| AATCATTGACCGAACCATAT+CGG | + | chr8_1:44752886-44752905 | None:intergenic | 35.0% | |
| AATGTCCTTAATCGCGAATT+GGG | + | chr8_1:44752944-44752963 | None:intergenic | 35.0% | |
| AAATGTCCTTAATCGCGAAT+TGG | + | chr8_1:44752945-44752964 | None:intergenic | 35.0% | |
| CACAACATCAACCATAGAAT+TGG | + | chr8_1:44753084-44753103 | None:intergenic | 35.0% | |
| ! | ATGGTTGATGTTGTGAATGT+TGG | - | chr8_1:44753089-44753108 | Msa1196080:intron | 35.0% |
| ! | TGATGATGATGAGAACTATG+AGG | - | chr8_1:44753175-44753194 | Msa1196080:intron | 35.0% |
| ATAGAAAACAAGCTTGAACC+TGG | - | chr8_1:44753272-44753291 | Msa1196080:CDS | 35.0% | |
| AAGGAAAGTTCAACTTGCAA+AGG | - | chr8_1:44753295-44753314 | Msa1196080:CDS | 35.0% | |
| TGGCTATATGGTTCCAAAAT+AGG | - | chr8_1:44753342-44753361 | Msa1196080:CDS | 35.0% | |
| ! | TGAATCTTGCTCTCCTATTT+TGG | + | chr8_1:44753358-44753377 | None:intergenic | 35.0% |
| AAACAGCTAGAAAAGGACTA+TGG | - | chr8_1:44753383-44753402 | Msa1196080:CDS | 35.0% | |
| TCAGTGCTATATATGCTTGA+TGG | + | chr8_1:44753539-44753558 | None:intergenic | 35.0% | |
| ATTGGTCCCAAGAAAAAAAG+AGG | - | chr8_1:44754109-44754128 | Msa1196080:intron | 35.0% | |
| ! | TGTGAAAATTCTGACTGGTT+TGG | + | chr8_1:44754248-44754267 | None:intergenic | 35.0% |
| CATCTTGTGAAAATTCTGAC+TGG | + | chr8_1:44754253-44754272 | None:intergenic | 35.0% | |
| ! | CATCCAACATCTTCAACTTT+TGG | + | chr8_1:44754320-44754339 | None:intergenic | 35.0% |
| TATTGAGTCAGTACTACTAG+TGG | - | chr8_1:44754413-44754432 | Msa1196080:five_prime_UTR | 35.0% | |
| GTGAATAAATTTAAGGGCAG+AGG | + | chr8_1:44752195-44752214 | None:intergenic | 35.0% | |
| TAGTGAGGAATAATGCAATG+TGG | + | chr8_1:44752262-44752281 | None:intergenic | 35.0% | |
| AAATTAATGGCTAGAGCAGA+AGG | + | chr8_1:44752285-44752304 | None:intergenic | 35.0% | |
| AATGAATCACCTTGACAAGA+AGG | + | chr8_1:44752526-44752545 | None:intergenic | 35.0% | |
| CAACAATCAAGAAGCTACAA+AGG | + | chr8_1:44752550-44752569 | None:intergenic | 35.0% | |
| ! | TTTTGGTCGAAAACAGAAGT+TGG | - | chr8_1:44752652-44752671 | Msa1196080:intron | 35.0% |
| ! | CAAACATGCACTAAGTATTG+TGG | + | chr8_1:44752726-44752745 | None:intergenic | 35.0% |
| ! | CTTAGTGCATGTTTGAAATC+AGG | - | chr8_1:44752731-44752750 | Msa1196080:intron | 35.0% |
| GTAGTAAAATGTAGCCGATA+TGG | - | chr8_1:44752869-44752888 | Msa1196080:intron | 35.0% | |
| AAAATGTAGCCGATATGGTT+CGG | - | chr8_1:44752874-44752893 | Msa1196080:intron | 35.0% | |
| AATCATTGACCGAACCATAT+CGG | + | chr8_1:44752886-44752905 | None:intergenic | 35.0% | |
| AATGTCCTTAATCGCGAATT+GGG | + | chr8_1:44752944-44752963 | None:intergenic | 35.0% | |
| AAATGTCCTTAATCGCGAAT+TGG | + | chr8_1:44752945-44752964 | None:intergenic | 35.0% | |
| CACAACATCAACCATAGAAT+TGG | + | chr8_1:44753084-44753103 | None:intergenic | 35.0% | |
| ! | ATGGTTGATGTTGTGAATGT+TGG | - | chr8_1:44753089-44753108 | Msa1196080:intron | 35.0% |
| ! | TGATGATGATGAGAACTATG+AGG | - | chr8_1:44753175-44753194 | Msa1196080:intron | 35.0% |
| ATAGAAAACAAGCTTGAACC+TGG | - | chr8_1:44753272-44753291 | Msa1196080:CDS | 35.0% | |
| AAGGAAAGTTCAACTTGCAA+AGG | - | chr8_1:44753295-44753314 | Msa1196080:CDS | 35.0% | |
| TGGCTATATGGTTCCAAAAT+AGG | - | chr8_1:44753342-44753361 | Msa1196080:CDS | 35.0% | |
| ! | TGAATCTTGCTCTCCTATTT+TGG | + | chr8_1:44753358-44753377 | None:intergenic | 35.0% |
| AAACAGCTAGAAAAGGACTA+TGG | - | chr8_1:44753383-44753402 | Msa1196080:CDS | 35.0% | |
| TCAGTGCTATATATGCTTGA+TGG | + | chr8_1:44753539-44753558 | None:intergenic | 35.0% | |
| ATTGGTCCCAAGAAAAAAAG+AGG | - | chr8_1:44754109-44754128 | Msa1196080:intron | 35.0% | |
| ! | TGTGAAAATTCTGACTGGTT+TGG | + | chr8_1:44754248-44754267 | None:intergenic | 35.0% |
| CATCTTGTGAAAATTCTGAC+TGG | + | chr8_1:44754253-44754272 | None:intergenic | 35.0% | |
| ! | CATCCAACATCTTCAACTTT+TGG | + | chr8_1:44754320-44754339 | None:intergenic | 35.0% |
| TATTGAGTCAGTACTACTAG+TGG | - | chr8_1:44754413-44754432 | Msa1196080:five_prime_UTR | 35.0% | |
| TGTGGAATTTGTGAGAGTGA+GGG | + | chr8_1:44752244-44752263 | None:intergenic | 40.0% | |
| ATGTGGAATTTGTGAGAGTG+AGG | + | chr8_1:44752245-44752264 | None:intergenic | 40.0% | |
| TAAGAAGTGGCATAGGGATA+AGG | + | chr8_1:44752325-44752344 | None:intergenic | 40.0% | |
| AGCTCAAAACCTTCTTGTCA+AGG | - | chr8_1:44752514-44752533 | Msa1196080:CDS | 40.0% | |
| TTGGGCCGGGAAATTTATAA+TGG | + | chr8_1:44752926-44752945 | None:intergenic | 40.0% | |
| ! | GGATTCAGGTTCCAATTCTA+TGG | - | chr8_1:44753070-44753089 | Msa1196080:intron | 40.0% |
| !! | TGTTGTGAATGTTGGTGACA+TGG | - | chr8_1:44753097-44753116 | Msa1196080:intron | 40.0% |
| !! | GTTGTGAATGTTGGTGACAT+GGG | - | chr8_1:44753098-44753117 | Msa1196080:intron | 40.0% |
| AAAACAAGCTTGAACCTGGA+AGG | - | chr8_1:44753276-44753295 | Msa1196080:CDS | 40.0% | |
| AACCATATAGCCACTTGTCT+TGG | + | chr8_1:44753335-44753354 | None:intergenic | 40.0% | |
| TGGAAACCAATCCTTAGTTG+TGG | - | chr8_1:44754220-44754239 | Msa1196080:CDS | 40.0% | |
| TTGGTTCCACAACTAAGGAT+TGG | + | chr8_1:44754229-44754248 | None:intergenic | 40.0% | |
| ! | ATGGAACAGTCAAGAGGTTT+TGG | + | chr8_1:44754292-44754311 | None:intergenic | 40.0% |
| GTATGAATGGAACAGTCAAG+AGG | + | chr8_1:44754298-44754317 | None:intergenic | 40.0% | |
| AAGCTACAGCAACTTTCATG+TGG | + | chr8_1:44754353-44754372 | None:intergenic | 40.0% | |
| TGTGGAATTTGTGAGAGTGA+GGG | + | chr8_1:44752244-44752263 | None:intergenic | 40.0% | |
| ATGTGGAATTTGTGAGAGTG+AGG | + | chr8_1:44752245-44752264 | None:intergenic | 40.0% | |
| TAAGAAGTGGCATAGGGATA+AGG | + | chr8_1:44752325-44752344 | None:intergenic | 40.0% | |
| AGCTCAAAACCTTCTTGTCA+AGG | - | chr8_1:44752514-44752533 | Msa1196080:CDS | 40.0% | |
| TTGGGCCGGGAAATTTATAA+TGG | + | chr8_1:44752926-44752945 | None:intergenic | 40.0% | |
| ! | GGATTCAGGTTCCAATTCTA+TGG | - | chr8_1:44753070-44753089 | Msa1196080:intron | 40.0% |
| !! | TGTTGTGAATGTTGGTGACA+TGG | - | chr8_1:44753097-44753116 | Msa1196080:intron | 40.0% |
| !! | GTTGTGAATGTTGGTGACAT+GGG | - | chr8_1:44753098-44753117 | Msa1196080:intron | 40.0% |
| AAAACAAGCTTGAACCTGGA+AGG | - | chr8_1:44753276-44753295 | Msa1196080:CDS | 40.0% | |
| AACCATATAGCCACTTGTCT+TGG | + | chr8_1:44753335-44753354 | None:intergenic | 40.0% | |
| TGGAAACCAATCCTTAGTTG+TGG | - | chr8_1:44754220-44754239 | Msa1196080:CDS | 40.0% | |
| TTGGTTCCACAACTAAGGAT+TGG | + | chr8_1:44754229-44754248 | None:intergenic | 40.0% | |
| ! | ATGGAACAGTCAAGAGGTTT+TGG | + | chr8_1:44754292-44754311 | None:intergenic | 40.0% |
| GTATGAATGGAACAGTCAAG+AGG | + | chr8_1:44754298-44754317 | None:intergenic | 40.0% | |
| AAGCTACAGCAACTTTCATG+TGG | + | chr8_1:44754353-44754372 | None:intergenic | 40.0% | |
| TTTGTGAGAGTGAGGGACAT+AGG | + | chr8_1:44752237-44752256 | None:intergenic | 45.0% | |
| ! | GTGCATGTTTGAAATCAGGG+TGG | - | chr8_1:44752735-44752754 | Msa1196080:intron | 45.0% |
| TGCACCAACCAGGTAAGAAA+AGG | - | chr8_1:44753204-44753223 | Msa1196080:intron | 45.0% | |
| ACCAACCAGGTAAGAAAAGG+AGG | - | chr8_1:44753207-44753226 | Msa1196080:intron | 45.0% | |
| ! | GCAAGTTGAACTTTCCTTCC+AGG | + | chr8_1:44753293-44753312 | None:intergenic | 45.0% |
| AGCCAAGACAAGTGGCTATA+TGG | - | chr8_1:44753330-44753349 | Msa1196080:CDS | 45.0% | |
| GAATGCCTACAGAACACTGA+TGG | - | chr8_1:44754200-44754219 | Msa1196080:intron | 45.0% | |
| GGTTTCCATCAGTGTTCTGT+AGG | + | chr8_1:44754208-44754227 | None:intergenic | 45.0% | |
| !! | CTGGTTTGGTTCCACAACTA+AGG | + | chr8_1:44754234-44754253 | None:intergenic | 45.0% |
| !!! | CAGTCAAGAGGTTTTGGCTT+AGG | + | chr8_1:44754286-44754305 | None:intergenic | 45.0% |
| TTTGTGAGAGTGAGGGACAT+AGG | + | chr8_1:44752237-44752256 | None:intergenic | 45.0% | |
| ! | GTGCATGTTTGAAATCAGGG+TGG | - | chr8_1:44752735-44752754 | Msa1196080:intron | 45.0% |
| TGCACCAACCAGGTAAGAAA+AGG | - | chr8_1:44753204-44753223 | Msa1196080:intron | 45.0% | |
| ACCAACCAGGTAAGAAAAGG+AGG | - | chr8_1:44753207-44753226 | Msa1196080:intron | 45.0% | |
| ! | GCAAGTTGAACTTTCCTTCC+AGG | + | chr8_1:44753293-44753312 | None:intergenic | 45.0% |
| AGCCAAGACAAGTGGCTATA+TGG | - | chr8_1:44753330-44753349 | Msa1196080:CDS | 45.0% | |
| GAATGCCTACAGAACACTGA+TGG | - | chr8_1:44754200-44754219 | Msa1196080:intron | 45.0% | |
| GGTTTCCATCAGTGTTCTGT+AGG | + | chr8_1:44754208-44754227 | None:intergenic | 45.0% | |
| !! | CTGGTTTGGTTCCACAACTA+AGG | + | chr8_1:44754234-44754253 | None:intergenic | 45.0% |
| !!! | CAGTCAAGAGGTTTTGGCTT+AGG | + | chr8_1:44754286-44754305 | None:intergenic | 45.0% |
| TGAGCTCGTCAACTCTCTCT+TGG | - | chr8_1:44752480-44752499 | Msa1196080:CDS | 50.0% | |
| TCCTTAATCGCGAATTGGGC+CGG | + | chr8_1:44752940-44752959 | None:intergenic | 50.0% | |
| ! | GCCTCCTTTTCTTACCTGGT+TGG | + | chr8_1:44753211-44753230 | None:intergenic | 50.0% |
| ! | GTGAGCCTCCTTTTCTTACC+TGG | + | chr8_1:44753215-44753234 | None:intergenic | 50.0% |
| ! | TAGCTTGCAGCCAAGACAAG+TGG | - | chr8_1:44753322-44753341 | Msa1196080:CDS | 50.0% |
| GTCAGTGCCAATGTCATGTC+TGG | - | chr8_1:44753646-44753665 | Msa1196080:CDS | 50.0% | |
| ACGAGCACCAGACATGACAT+TGG | + | chr8_1:44753656-44753675 | None:intergenic | 50.0% | |
| TGAGCTCGTCAACTCTCTCT+TGG | - | chr8_1:44752480-44752499 | Msa1196080:CDS | 50.0% | |
| TCCTTAATCGCGAATTGGGC+CGG | + | chr8_1:44752940-44752959 | None:intergenic | 50.0% | |
| ! | GCCTCCTTTTCTTACCTGGT+TGG | + | chr8_1:44753211-44753230 | None:intergenic | 50.0% |
| ! | GTGAGCCTCCTTTTCTTACC+TGG | + | chr8_1:44753215-44753234 | None:intergenic | 50.0% |
| ! | TAGCTTGCAGCCAAGACAAG+TGG | - | chr8_1:44753322-44753341 | Msa1196080:CDS | 50.0% |
| GTCAGTGCCAATGTCATGTC+TGG | - | chr8_1:44753646-44753665 | Msa1196080:CDS | 50.0% | |
| ACGAGCACCAGACATGACAT+TGG | + | chr8_1:44753656-44753675 | None:intergenic | 50.0% | |
| AAGGGCAGAGGGTAGTCATG+TGG | + | chr8_1:44752183-44752202 | None:intergenic | 55.0% | |
| GGCTAGAGCAGAAGGTAGTG+AGG | + | chr8_1:44752277-44752296 | None:intergenic | 55.0% | |
| CCTTAATCGCGAATTGGGCC+GGG | + | chr8_1:44752939-44752958 | None:intergenic | 55.0% | |
| AAGGGCAGAGGGTAGTCATG+TGG | + | chr8_1:44752183-44752202 | None:intergenic | 55.0% | |
| GGCTAGAGCAGAAGGTAGTG+AGG | + | chr8_1:44752277-44752296 | None:intergenic | 55.0% | |
| CCTTAATCGCGAATTGGGCC+GGG | + | chr8_1:44752939-44752958 | None:intergenic | 55.0% | |
| CCCGGCCCAATTCGCGATTA+AGG | - | chr8_1:44752936-44752955 | Msa1196080:intron | 60.0% | |
| GAGGTGAGCTTGCACCAACC+AGG | - | chr8_1:44753194-44753213 | Msa1196080:intron | 60.0% | |
| GGCAGAGGGTAGTCATGTGG+TGG | + | chr8_1:44752180-44752199 | None:intergenic | 60.0% | |
| CCCGGCCCAATTCGCGATTA+AGG | - | chr8_1:44752936-44752955 | Msa1196080:intron | 60.0% | |
| GAGGTGAGCTTGCACCAACC+AGG | - | chr8_1:44753194-44753213 | Msa1196080:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 44752178 | 44754560 | 44752178 | ID=Msa1196080;Name=Msa1196080 |
| chr8_1 | mRNA | 44752178 | 44754560 | 44752178 | ID=Msa1196080-mRNA-1;Parent=Msa1196080;Name=Msa1196080-mRNA-1;_AED=0.08;_eAED=0.08;_QI=231|0.5|0.66|1|1|1|3|142|291 |
| chr8_1 | exon | 44752178 | 44752649 | 44752178 | ID=Msa1196080-mRNA-1:exon:14411;Parent=Msa1196080-mRNA-1 |
| chr8_1 | exon | 44753254 | 44753672 | 44753254 | ID=Msa1196080-mRNA-1:exon:14410;Parent=Msa1196080-mRNA-1 |
| chr8_1 | exon | 44754203 | 44754560 | 44754203 | ID=Msa1196080-mRNA-1:exon:14409;Parent=Msa1196080-mRNA-1 |
| chr8_1 | five_prime_UTR | 44754330 | 44754560 | 44754330 | ID=Msa1196080-mRNA-1:five_prime_utr;Parent=Msa1196080-mRNA-1 |
| chr8_1 | CDS | 44754203 | 44754329 | 44754203 | ID=Msa1196080-mRNA-1:cds;Parent=Msa1196080-mRNA-1 |
| chr8_1 | CDS | 44753254 | 44753672 | 44753254 | ID=Msa1196080-mRNA-1:cds;Parent=Msa1196080-mRNA-1 |
| chr8_1 | CDS | 44752320 | 44752649 | 44752320 | ID=Msa1196080-mRNA-1:cds;Parent=Msa1196080-mRNA-1 |
| chr8_1 | three_prime_UTR | 44752178 | 44752319 | 44752178 | ID=Msa1196080-mRNA-1:three_prime_utr;Parent=Msa1196080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
