Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0378500 | XP_024633665.1 | 77.808 | 365 | 53 | 10 | 1 | 341 | 1 | 361 | 5.08e-177 | 505 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0378500 | A0A396IZA5 | 77.808 | 365 | 53 | 10 | 1 | 341 | 1 | 361 | 2.43e-177 | 505 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002930 | Msa0378500 | 0.818649 | 1.755466e-52 | -8.615850e-47 |
| Msa0005050 | Msa0378500 | 0.802319 | 5.936370e-49 | -8.615850e-47 |
| Msa0016120 | Msa0378500 | 0.810732 | 9.958287e-51 | -8.615850e-47 |
| Msa0017510 | Msa0378500 | 0.814174 | 1.762540e-51 | -8.615850e-47 |
| Msa0022640 | Msa0378500 | 0.825927 | 3.588502e-54 | -8.615850e-47 |
| Msa0036430 | Msa0378500 | 0.835056 | 2.095769e-56 | -8.615850e-47 |
| Msa0053110 | Msa0378500 | 0.811975 | 5.348902e-51 | -8.615850e-47 |
| Msa0084500 | Msa0378500 | 0.814049 | 1.877961e-51 | -8.615850e-47 |
| Msa0098440 | Msa0378500 | 0.814360 | 1.602970e-51 | -8.615850e-47 |
| Msa0103000 | Msa0378500 | 0.814846 | 1.251310e-51 | -8.615850e-47 |
| Msa0106790 | Msa0378500 | 0.822095 | 2.845625e-53 | -8.615850e-47 |
| Msa0110970 | Msa0378500 | 0.826796 | 2.228312e-54 | -8.615850e-47 |
| Msa0118380 | Msa0378500 | 0.825262 | 5.159764e-54 | -8.615850e-47 |
| Msa0118400 | Msa0378500 | 0.827422 | 1.578492e-54 | -8.615850e-47 |
| Msa0130570 | Msa0378500 | 0.847054 | 1.473475e-59 | -8.615850e-47 |
| Msa0141600 | Msa0378500 | 0.804232 | 2.384029e-49 | -8.615850e-47 |
| Msa0147560 | Msa0378500 | 0.846261 | 2.426725e-59 | -8.615850e-47 |
| Msa0153420 | Msa0378500 | 0.811501 | 6.784315e-51 | -8.615850e-47 |
| Msa0157290 | Msa0378500 | 0.814645 | 1.386738e-51 | -8.615850e-47 |
| Msa0161680 | Msa0378500 | 0.834142 | 3.556521e-56 | -8.615850e-47 |
| Msa0176470 | Msa0378500 | 0.814718 | 1.335946e-51 | -8.615850e-47 |
| Msa0197660 | Msa0378500 | 0.802784 | 4.758997e-49 | -8.615850e-47 |
| Msa0203030 | Msa0378500 | 0.845495 | 3.920149e-59 | -8.615850e-47 |
| Msa0219190 | Msa0378500 | 0.838679 | 2.492570e-57 | -8.615850e-47 |
| Msa0221290 | Msa0378500 | 0.808321 | 3.280294e-50 | -8.615850e-47 |
| Msa0370600 | Msa0378500 | 0.800869 | 1.177114e-48 | -8.615850e-47 |
| Msa0371540 | Msa0378500 | 0.805099 | 1.572220e-49 | -8.615850e-47 |
| Msa0378500 | Msa0413930 | 0.821636 | 3.634568e-53 | -8.615850e-47 |
| Msa0378500 | Msa0418200 | 0.803473 | 3.428955e-49 | -8.615850e-47 |
| Msa0378500 | Msa0419820 | 0.822573 | 2.204221e-53 | -8.615850e-47 |
| Msa0378500 | Msa0419970 | 0.812552 | 4.002242e-51 | -8.615850e-47 |
| Msa0378500 | Msa0436280 | -0.800033 | 1.742464e-48 | -8.615850e-47 |
| Msa0378500 | Msa0436500 | 0.838498 | 2.774393e-57 | -8.615850e-47 |
| Msa0378500 | Msa0444010 | 0.801482 | 8.818595e-49 | -8.615850e-47 |
| Msa0378500 | Msa0451400 | 0.800650 | 1.304959e-48 | -8.615850e-47 |
| Msa0378500 | Msa0458950 | 0.812733 | 3.654323e-51 | -8.615850e-47 |
| Msa0378500 | Msa0464540 | 0.806594 | 7.627137e-50 | -8.615850e-47 |
| Msa0378500 | Msa0466060 | 0.800338 | 1.510636e-48 | -8.615850e-47 |
| Msa0378500 | Msa0503580 | 0.801334 | 9.454574e-49 | -8.615850e-47 |
| Msa0378500 | Msa0517340 | 0.813756 | 2.178561e-51 | -8.615850e-47 |
| Msa0378500 | Msa0533070 | 0.800884 | 1.168891e-48 | -8.615850e-47 |
| Msa0378500 | Msa0535040 | 0.816139 | 6.449701e-52 | -8.615850e-47 |
| Msa0378500 | Msa0537920 | 0.816256 | 6.073979e-52 | -8.615850e-47 |
| Msa0378500 | Msa0547140 | 0.803934 | 2.750259e-49 | -8.615850e-47 |
| Msa0378500 | Msa0579290 | 0.801051 | 1.080747e-48 | -8.615850e-47 |
| Msa0378500 | Msa0579390 | 0.804520 | 2.077266e-49 | -8.615850e-47 |
| Msa0378500 | Msa0581760 | 0.802768 | 4.797042e-49 | -8.615850e-47 |
| Msa0378500 | Msa0601850 | 0.800720 | 1.262337e-48 | -8.615850e-47 |
| Msa0378500 | Msa0645050 | 0.804319 | 2.287244e-49 | -8.615850e-47 |
| Msa0378500 | Msa0649970 | 0.810518 | 1.107812e-50 | -8.615850e-47 |
| Msa0378500 | Msa0663680 | 0.813449 | 2.545256e-51 | -8.615850e-47 |
| Msa0378500 | Msa0682530 | 0.839521 | 1.508144e-57 | -8.615850e-47 |
| Msa0378500 | Msa0688770 | 0.802532 | 5.365023e-49 | -8.615850e-47 |
| Msa0378500 | Msa0691160 | 0.821340 | 4.254284e-53 | -8.615850e-47 |
| Msa0378500 | Msa0707220 | 0.837840 | 4.098408e-57 | -8.615850e-47 |
| Msa0378500 | Msa0747780 | 0.810556 | 1.087156e-50 | -8.615850e-47 |
| Msa0378500 | Msa0761580 | 0.810900 | 9.159442e-51 | -8.615850e-47 |
| Msa0378500 | Msa0843640 | 0.821852 | 3.239525e-53 | -8.615850e-47 |
| Msa0378500 | Msa0844560 | 0.808251 | 3.395306e-50 | -8.615850e-47 |
| Msa0378500 | Msa0867350 | 0.842783 | 2.093896e-58 | -8.615850e-47 |
| Msa0378500 | Msa0872310 | 0.803933 | 2.751765e-49 | -8.615850e-47 |
| Msa0378500 | Msa0873190 | 0.818322 | 2.082444e-52 | -8.615850e-47 |
| Msa0378500 | Msa0880140 | 0.813135 | 2.983471e-51 | -8.615850e-47 |
| Msa0378500 | Msa0885060 | 0.840139 | 1.041002e-57 | -8.615850e-47 |
| Msa0378500 | Msa0895790 | 0.805611 | 1.227786e-49 | -8.615850e-47 |
| Msa0378500 | Msa0898730 | 0.826877 | 2.131829e-54 | -8.615850e-47 |
| Msa0378500 | Msa0905550 | 0.808592 | 2.870870e-50 | -8.615850e-47 |
| Msa0378500 | Msa0911990 | 0.803272 | 3.772531e-49 | -8.615850e-47 |
| Msa0378500 | Msa0938430 | 0.818029 | 2.425488e-52 | -8.615850e-47 |
| Msa0378500 | Msa0975580 | 0.830865 | 2.307908e-55 | -8.615850e-47 |
| Msa0378500 | Msa0999360 | 0.803661 | 3.134512e-49 | -8.615850e-47 |
| Msa0378500 | Msa1014270 | 0.813978 | 1.947001e-51 | -8.615850e-47 |
| Msa0378500 | Msa1041530 | 0.817243 | 3.647996e-52 | -8.615850e-47 |
| Msa0378500 | Msa1049010 | 0.808064 | 3.721049e-50 | -8.615850e-47 |
| Msa0378500 | Msa1081570 | 0.812706 | 3.704443e-51 | -8.615850e-47 |
| Msa0378500 | Msa1097640 | 0.808971 | 2.382755e-50 | -8.615850e-47 |
| Msa0378500 | Msa1123880 | 0.828451 | 8.923729e-55 | -8.615850e-47 |
| Msa0378500 | Msa1127140 | 0.812856 | 3.434819e-51 | -8.615850e-47 |
| Msa0378500 | Msa1139810 | 0.822420 | 2.391605e-53 | -8.615850e-47 |
| Msa0378500 | Msa1145020 | 0.804281 | 2.329389e-49 | -8.615850e-47 |
| Msa0378500 | Msa1166400 | 0.805041 | 1.616743e-49 | -8.615850e-47 |
| Msa0378500 | Msa1176160 | 0.806721 | 7.167410e-50 | -8.615850e-47 |
| Msa0378500 | Msa1178160 | 0.805749 | 1.148548e-49 | -8.615850e-47 |
| Msa0378500 | Msa1179280 | 0.800925 | 1.146509e-48 | -8.615850e-47 |
| Msa0378500 | Msa1196080 | 0.806826 | 6.811243e-50 | -8.615850e-47 |
| Msa0378500 | Msa1201110 | 0.806034 | 1.000571e-49 | -8.615850e-47 |
| Msa0378500 | Msa1222970 | 0.802736 | 4.870646e-49 | -8.615850e-47 |
| Msa0378500 | Msa1228610 | 0.828722 | 7.678229e-55 | -8.615850e-47 |
| Msa0378500 | Msa1233560 | 0.816973 | 4.195595e-52 | -8.615850e-47 |
| Msa0378500 | Msa1248040 | 0.817686 | 2.899530e-52 | -8.615850e-47 |
| Msa0378500 | Msa1264020 | 0.808539 | 2.946938e-50 | -8.615850e-47 |
| Msa0378500 | Msa1271260 | 0.807079 | 6.022035e-50 | -8.615850e-47 |
| Msa0378500 | Msa1305510 | 0.832054 | 1.176211e-55 | -8.615850e-47 |
| Msa0378500 | Msa1307190 | 0.802348 | 5.855573e-49 | -8.615850e-47 |
| Msa0378500 | Msa1313970 | 0.801353 | 9.371322e-49 | -8.615850e-47 |
| Msa0378500 | Msa1355400 | 0.800705 | 1.271693e-48 | -8.615850e-47 |
| Msa0378500 | Msa1378760 | 0.800732 | 1.255683e-48 | -8.615850e-47 |
| Msa0378500 | Msa1414930 | 0.819647 | 1.040503e-52 | -8.615850e-47 |
| Msa0378500 | Msa1420060 | 0.852494 | 4.450991e-61 | -8.615850e-47 |
| Msa0378500 | Msa1421550 | 0.812640 | 3.829123e-51 | -8.615850e-47 |
| Msa0378500 | Msa1424690 | 0.829542 | 4.856503e-55 | -8.615850e-47 |
| Msa0378500 | Msa1429250 | 0.802401 | 5.709988e-49 | -8.615850e-47 |
| Msa0378500 | Msa1429360 | -0.800655 | 1.301516e-48 | -8.615850e-47 |
| Msa0378500 | Msa1453710 | 0.801654 | 8.130596e-49 | -8.615850e-47 |
| Msa0238890 | Msa0378500 | 0.813696 | 2.246368e-51 | -8.615850e-47 |
| Msa0260970 | Msa0378500 | 0.807408 | 5.128848e-50 | -8.615850e-47 |
| Msa0298240 | Msa0378500 | 0.832077 | 1.161027e-55 | -8.615850e-47 |
| Msa0306300 | Msa0378500 | 0.807927 | 3.979896e-50 | -8.615850e-47 |
| Msa0317510 | Msa0378500 | 0.805430 | 1.340100e-49 | -8.615850e-47 |
| Msa0320100 | Msa0378500 | 0.802605 | 5.182972e-49 | -8.615850e-47 |
| Msa0322830 | Msa0378500 | 0.825468 | 4.612385e-54 | -8.615850e-47 |
| Msa0322840 | Msa0378500 | 0.805551 | 1.263720e-49 | -8.615850e-47 |
| Msa0323610 | Msa0378500 | 0.826613 | 2.464469e-54 | -8.615850e-47 |
| Msa0329620 | Msa0378500 | 0.806578 | 7.686059e-50 | -8.615850e-47 |
| Msa0359250 | Msa0378500 | 0.800831 | 1.198150e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0378500 | MtrunA17_Chr3g0130951 | 77.808 | 365 | 53 | 10 | 1 | 341 | 1 | 361 | 0.0 | 505 |
| Msa0378500 | MtrunA17_Chr1g0157641 | 37.815 | 119 | 72 | 2 | 227 | 344 | 429 | 546 | 1.03e-16 | 81.3 |
| Msa0378500 | MtrunA17_Chr2g0280481 | 36.975 | 119 | 73 | 2 | 227 | 344 | 417 | 534 | 2.69e-16 | 79.7 |
| Msa0378500 | MtrunA17_Chr1g0157651 | 32.710 | 107 | 71 | 1 | 237 | 342 | 753 | 859 | 4.00e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0378500 | AT4G01170.1 | 40.000 | 115 | 66 | 2 | 224 | 335 | 322 | 436 | 7.73e-18 | 84.7 |
| Msa0378500 | AT3G07730.2 | 37.719 | 114 | 69 | 2 | 224 | 335 | 284 | 397 | 2.37e-14 | 73.9 |
| Msa0378500 | AT3G07730.1 | 37.719 | 114 | 69 | 2 | 224 | 335 | 352 | 465 | 2.84e-14 | 73.9 |
| Msa0378500 | AT1G77270.2 | 37.624 | 101 | 61 | 1 | 237 | 335 | 571 | 671 | 2.58e-13 | 71.6 |
| Msa0378500 | AT1G77270.1 | 37.624 | 101 | 61 | 1 | 237 | 335 | 571 | 671 | 2.58e-13 | 71.6 |
Find 84 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATCCCATGTTCTCTTTCT+AGG | 0.150314 | 3_1:-79306669 | None:intergenic |
| ATCATCATGTTCAAAGAAAA+AGG | 0.196121 | 3_1:+79307028 | Msa0378500:CDS |
| TCCATCATGATCTCCCTTAT+AGG | 0.226228 | 3_1:-79308036 | None:intergenic |
| ATCAAGTCTGAGTCGGCTTT+TGG | 0.239955 | 3_1:-79306792 | None:intergenic |
| CACACAACATATAGATAAAA+AGG | 0.273141 | 3_1:-79309466 | None:intergenic |
| CGCAGGAGACGCAAAACTTT+GGG | 0.279175 | 3_1:-79308383 | None:intergenic |
| TGGGAGTAGCAAAGCCTATA+AGG | 0.298108 | 3_1:+79308022 | Msa0378500:CDS |
| GATGATGTGTATGTGAAATT+TGG | 0.315151 | 3_1:+79306999 | Msa0378500:CDS |
| TGTCGATGAAAGTGTGAAAA+AGG | 0.317887 | 3_1:+79307316 | Msa0378500:CDS |
| TTTCATTCTTAACAAGATTA+GGG | 0.340301 | 3_1:+79306710 | Msa0378500:CDS |
| ATTTCATTCTTAACAAGATT+AGG | 0.340678 | 3_1:+79306709 | Msa0378500:CDS |
| ATCTCACCTGCTTCATCTTC+AGG | 0.342233 | 3_1:+79306848 | Msa0378500:CDS |
| CTATCATCCTTTCCTATTGT+TGG | 0.342465 | 3_1:-79309564 | None:intergenic |
| CTAAACTCCGTCACTTTCCT+TGG | 0.360637 | 3_1:-79307891 | None:intergenic |
| AGTACGAGGAGGAACGAAAT+AGG | 0.361517 | 3_1:+79306919 | Msa0378500:CDS |
| GACTTAGTCGTGTGACTTCA+AGG | 0.364514 | 3_1:+79307087 | Msa0378500:CDS |
| ATGGAGGGATCCATCGTGTT+TGG | 0.375665 | 3_1:+79309393 | Msa0378500:CDS |
| CACGTAGAAATGCTCTTAAA+AGG | 0.376728 | 3_1:+79307207 | Msa0378500:CDS |
| AACTCATGAAAGAAATTAAC+AGG | 0.379578 | 3_1:+79307919 | Msa0378500:CDS |
| CTCTTTCTAGGGTTCACTGA+AGG | 0.383717 | 3_1:-79306657 | None:intergenic |
| GATGTATTACCACCAACAAT+AGG | 0.384609 | 3_1:+79309552 | Msa0378500:three_prime_UTR |
| AATTACATCGGAGACAATTA+TGG | 0.384782 | 3_1:-79309660 | None:intergenic |
| GATCCCATGTTCTCTTTCTA+GGG | 0.386905 | 3_1:-79306668 | None:intergenic |
| GCGCAGGAGACGCAAAACTT+TGG | 0.405534 | 3_1:-79308384 | None:intergenic |
| ATGGAAAGTTCGGTCGTGTT+TGG | 0.406300 | 3_1:+79309530 | Msa0378500:three_prime_UTR |
| CAGGTGAGATTGTATAATAT+TGG | 0.416449 | 3_1:-79306835 | None:intergenic |
| TACACCAGTCTAGTTAGAAA+TGG | 0.429954 | 3_1:+79309632 | Msa0378500:three_prime_UTR |
| TTATGCTCTTCTTCGCAGTA+AGG | 0.438599 | 3_1:-79307942 | None:intergenic |
| TAATATAAAATTTGTGAAGA+AGG | 0.438820 | 3_1:-79306764 | None:intergenic |
| TCTTTCTAGGGTTCACTGAA+GGG | 0.467820 | 3_1:-79306656 | None:intergenic |
| CATTTGTGCCATGGAAAGTT+CGG | 0.468876 | 3_1:+79309520 | Msa0378500:three_prime_UTR |
| TCATGTTGTAGATCTTCTAA+AGG | 0.481902 | 3_1:+79308334 | Msa0378500:intron |
| TCATCCTTTCCTATTGTTGG+TGG | 0.482203 | 3_1:-79309561 | None:intergenic |
| AGAATGATGTGAACGTGAAT+GGG | 0.483464 | 3_1:+79307261 | Msa0378500:CDS |
| GACTTCAAGGAAGGGTGGTA+GGG | 0.486903 | 3_1:+79307100 | Msa0378500:CDS |
| CTTTCTAGGGTTCACTGAAG+GGG | 0.492279 | 3_1:-79306655 | None:intergenic |
| TGACTTCAAGGAAGGGTGGT+AGG | 0.494947 | 3_1:+79307099 | Msa0378500:CDS |
| ATCATCCTTTCTTATTGTTG+TGG | 0.497020 | 3_1:-79309424 | None:intergenic |
| AGAAATTAATGCTCGAACGC+CGG | 0.497133 | 3_1:+79307977 | Msa0378500:CDS |
| AAGAATGATGTGAACGTGAA+TGG | 0.498557 | 3_1:+79307260 | Msa0378500:CDS |
| TTGAATCATTTGAAGCGTGA+TGG | 0.498621 | 3_1:+79306948 | Msa0378500:CDS |
| TAGGGACCCTAATACTCAAA+AGG | 0.500813 | 3_1:+79306728 | Msa0378500:CDS |
| GGGAGTAGCAAAGCCTATAA+GGG | 0.517239 | 3_1:+79308023 | Msa0378500:CDS |
| AACTACCACAACAATAAGAA+AGG | 0.529022 | 3_1:+79309419 | Msa0378500:exon |
| GTGAACGTGAATGGGGAAGA+AGG | 0.529870 | 3_1:+79307269 | Msa0378500:CDS |
| AATGCTCTTAAAAGGAAAAG+AGG | 0.535455 | 3_1:+79307215 | Msa0378500:CDS |
| ACTTCAAGGAAGGGTGGTAG+GGG | 0.536732 | 3_1:+79307101 | Msa0378500:CDS |
| GCCTATAAGGGAGATCATGA+TGG | 0.545167 | 3_1:+79308035 | Msa0378500:CDS |
| GCATCCATTTCTAACTAGAC+TGG | 0.546440 | 3_1:-79309636 | None:intergenic |
| AAGGAGATTCAAGATGATGA+TGG | 0.551660 | 3_1:+79307335 | Msa0378500:CDS |
| TTTCTAGGGTTCACTGAAGG+GGG | 0.556159 | 3_1:-79306654 | None:intergenic |
| TGAGATTGTATAATATTGGA+TGG | 0.558685 | 3_1:-79306831 | None:intergenic |
| GATCAGAATTTAACACATGA+GGG | 0.563409 | 3_1:+79309495 | Msa0378500:three_prime_UTR |
| TTTGTTCCTGAAGATGAAGC+AGG | 0.564716 | 3_1:-79306854 | None:intergenic |
| AAACACGACCGAACTTTCCA+TGG | 0.567649 | 3_1:-79309528 | None:intergenic |
| AAGACGGAGCGTTCATGCCA+TGG | 0.578007 | 3_1:+79309374 | Msa0378500:CDS |
| GAACTTTATCAAGTCTGAGT+CGG | 0.581290 | 3_1:-79306799 | None:intergenic |
| TAGTCGTGTGACTTCAAGGA+AGG | 0.585097 | 3_1:+79307091 | Msa0378500:CDS |
| TATCTGCTGCTAAGAAACGT+TGG | 0.589299 | 3_1:+79307150 | Msa0378500:CDS |
| TGAACCCTAGAAAGAGAACA+TGG | 0.591246 | 3_1:+79306664 | Msa0378500:CDS |
| TGATCAGAATTTAACACATG+AGG | 0.591494 | 3_1:+79309494 | Msa0378500:three_prime_UTR |
| ATGAGGGGACATTTGTGCCA+TGG | 0.600269 | 3_1:+79309511 | Msa0378500:three_prime_UTR |
| CGGAGCGTTCATGCCATGGA+GGG | 0.608980 | 3_1:+79309378 | Msa0378500:CDS |
| AGGATAATGAAGTCAATCCA+AGG | 0.614148 | 3_1:+79307874 | Msa0378500:intron |
| ATTCAAGATGATGATGGTGA+TGG | 0.615253 | 3_1:+79307341 | Msa0378500:CDS |
| GACTTGATAAAGTTCACAGA+TGG | 0.623810 | 3_1:+79306807 | Msa0378500:CDS |
| AATCAGTATTCAACGCAAGA+CGG | 0.628758 | 3_1:+79309358 | Msa0378500:intron |
| AGAAAATCTCAGAGAGTACG+AGG | 0.632822 | 3_1:+79306905 | Msa0378500:intron |
| TTATGTACTTGAGATTGTTG+AGG | 0.636491 | 3_1:+79306977 | Msa0378500:CDS |
| ATTACCACCAACAATAGGAA+AGG | 0.639976 | 3_1:+79309557 | Msa0378500:three_prime_UTR |
| AAACACGATGGATCCCTCCA+TGG | 0.643689 | 3_1:-79309391 | None:intergenic |
| ACGGAGCGTTCATGCCATGG+AGG | 0.643935 | 3_1:+79309377 | Msa0378500:CDS |
| GCAGGAGACGCAAAACTTTG+GGG | 0.646503 | 3_1:-79308382 | None:intergenic |
| TAAACTAGAGTAAATTACAT+CGG | 0.647599 | 3_1:-79309672 | None:intergenic |
| GAATGATGTGAACGTGAATG+GGG | 0.654990 | 3_1:+79307262 | Msa0378500:CDS |
| AGTCAATCCAAGGAAAGTGA+CGG | 0.655708 | 3_1:+79307884 | Msa0378500:CDS |
| CGTGTGACTTCAAGGAAGGG+TGG | 0.659520 | 3_1:+79307095 | Msa0378500:CDS |
| AGTCGTGTGACTTCAAGGAA+GGG | 0.667589 | 3_1:+79307092 | Msa0378500:CDS |
| ATCAGAATTTAACACATGAG+GGG | 0.683080 | 3_1:+79309496 | Msa0378500:three_prime_UTR |
| GGTAGTTCGTCCAAACACGA+TGG | 0.687379 | 3_1:-79309403 | None:intergenic |
| AAATCTCAGAGAGTACGAGG+AGG | 0.695278 | 3_1:+79306908 | Msa0378500:CDS |
| GAACCCTAGAAAGAGAACAT+GGG | 0.714054 | 3_1:+79306665 | Msa0378500:CDS |
| TAATAATAAGAAAAGTGACG+TGG | 0.721249 | 3_1:+79307175 | Msa0378500:CDS |
| GGTGTTAAGAACTCTAAACG+TGG | 0.725632 | 3_1:+79307059 | Msa0378500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATAGAAATTAAAGATA+GGG | - | chr3_1:79309034-79309053 | None:intergenic | 10.0% |
| !! | AATATATAGAAATTAAAGAT+AGG | - | chr3_1:79309035-79309054 | None:intergenic | 10.0% |
| !!! | TTTAATTTCTATATATTCAT+CGG | + | chr3_1:79309038-79309057 | Msa0378500:intron | 10.0% |
| !! | TAATATAAAATTTGTGAAGA+AGG | - | chr3_1:79306767-79306786 | None:intergenic | 15.0% |
| !! | TAAAAGAAAAGATAAAATGT+TGG | - | chr3_1:79307449-79307468 | None:intergenic | 15.0% |
| !! | ATATGTTTAATGTATACATA+TGG | + | chr3_1:79308147-79308166 | Msa0378500:intron | 15.0% |
| !! | TATACTTCAAATTATAATTC+CGG | - | chr3_1:79308882-79308901 | None:intergenic | 15.0% |
| !! | AAAAATGCAAAAATATTGTT+TGG | + | chr3_1:79308926-79308945 | Msa0378500:intron | 15.0% |
| !! | TATATAGAAATTAAAGATAG+GGG | - | chr3_1:79309033-79309052 | None:intergenic | 15.0% |
| !! | AAATTGTTACAAATAAACAA+GGG | - | chr3_1:79309137-79309156 | None:intergenic | 15.0% |
| !! | AAAATTGTTACAAATAAACA+AGG | - | chr3_1:79309138-79309157 | None:intergenic | 15.0% |
| !! | ATTTCATTCTTAACAAGATT+AGG | + | chr3_1:79306709-79306728 | Msa0378500:CDS | 20.0% |
| !! | TTTCATTCTTAACAAGATTA+GGG | + | chr3_1:79306710-79306729 | Msa0378500:CDS | 20.0% |
| !!! | TTCTTTTCTGGATTTTTTTT+TGG | - | chr3_1:79307245-79307264 | None:intergenic | 20.0% |
| !!! | ACTTCAATCTCAATATTTTA+GGG | - | chr3_1:79307749-79307768 | None:intergenic | 20.0% |
| !!! | TTTTTGAAAAATATGTGTGA+AGG | - | chr3_1:79308479-79308498 | None:intergenic | 20.0% |
| !! | TATGAGAATTGAAAATCTAT+TGG | + | chr3_1:79308847-79308866 | Msa0378500:intron | 20.0% |
| !!! | TTACATATAGACCTTTTTAT+TGG | + | chr3_1:79308993-79309012 | Msa0378500:intron | 20.0% |
| !!! | TATTAGTTTAGAATTAGACT+TGG | + | chr3_1:79309273-79309292 | Msa0378500:intron | 20.0% |
| ! | TGAGATTGTATAATATTGGA+TGG | - | chr3_1:79306834-79306853 | None:intergenic | 25.0% |
| ! | ATCATCATGTTCAAAGAAAA+AGG | + | chr3_1:79307028-79307047 | Msa0378500:CDS | 25.0% |
| ! | TCATCATGTTCAAAGAAAAA+GGG | + | chr3_1:79307029-79307048 | Msa0378500:CDS | 25.0% |
| ! | TAATAATAAGAAAAGTGACG+TGG | + | chr3_1:79307175-79307194 | Msa0378500:CDS | 25.0% |
| ! | TGTGATTGAGATAATTAATG+TGG | + | chr3_1:79307370-79307389 | Msa0378500:intron | 25.0% |
| !!! | AATTTGCCTTTGTACTTTTT+TGG | + | chr3_1:79307631-79307650 | Msa0378500:intron | 25.0% |
| !! | GACTTCAATCTCAATATTTT+AGG | - | chr3_1:79307750-79307769 | None:intergenic | 25.0% |
| ! | AAAATATTGAGATTGAAGTC+TGG | + | chr3_1:79307750-79307769 | Msa0378500:intron | 25.0% |
| !!! | TAAGGATGAACTTTTTTGAT+AGG | + | chr3_1:79307854-79307873 | Msa0378500:intron | 25.0% |
| ! | AACTCATGAAAGAAATTAAC+AGG | + | chr3_1:79307919-79307938 | Msa0378500:CDS | 25.0% |
| ! | GTATGCTATTACTAATTAAG+AGG | - | chr3_1:79308106-79308125 | None:intergenic | 25.0% |
| !! | TACTGTTTTCACTTTGAATT+TGG | + | chr3_1:79308213-79308232 | Msa0378500:intron | 25.0% |
| !! | AAACTTTCAGGTGAATATAT+AGG | - | chr3_1:79308540-79308559 | None:intergenic | 25.0% |
| ! | GTTAGAAGTTAAAAACTTTC+AGG | - | chr3_1:79308552-79308571 | None:intergenic | 25.0% |
| ! | AATAATTACCACATATACGT+GGG | - | chr3_1:79308709-79308728 | None:intergenic | 25.0% |
| ! | AAATAATTACCACATATACG+TGG | - | chr3_1:79308710-79308729 | None:intergenic | 25.0% |
| ! | ACGTATATGTGGTAATTATT+TGG | + | chr3_1:79308709-79308728 | Msa0378500:intron | 25.0% |
| ! | ATTAAACAACTGATCAAGAA+TGG | + | chr3_1:79308794-79308813 | Msa0378500:intron | 25.0% |
| ! | TCTAAATTGAGTTCTACAAT+TGG | + | chr3_1:79308817-79308836 | Msa0378500:intron | 25.0% |
| ! | TCAAATTATAATTCCGGAAT+TGG | - | chr3_1:79308876-79308895 | None:intergenic | 25.0% |
| !! | CAAAATTTGCTCCAATAAAA+AGG | - | chr3_1:79309007-79309026 | None:intergenic | 25.0% |
| !! | TTTTTACTGGATGTGTATAT+TGG | + | chr3_1:79309095-79309114 | Msa0378500:intron | 25.0% |
| !! | TTTTACTGGATGTGTATATT+GGG | + | chr3_1:79309096-79309115 | Msa0378500:intron | 25.0% |
| ! | GTTCTTGTAATTTATATCGT+AGG | + | chr3_1:79309215-79309234 | Msa0378500:intron | 25.0% |
| !! | TAGAATTAGACTTGGTAATT+TGG | + | chr3_1:79309281-79309300 | Msa0378500:intron | 25.0% |
| ! | TGATAAGATAACACAACATA+TGG | - | chr3_1:79309339-79309358 | None:intergenic | 25.0% |
| ! | CAACATATAGATAAAAAGGA+GGG | - | chr3_1:79309465-79309484 | None:intergenic | 25.0% |
| ! | ACAACATATAGATAAAAAGG+AGG | - | chr3_1:79309466-79309485 | None:intergenic | 25.0% |
| ! | CACACAACATATAGATAAAA+AGG | - | chr3_1:79309469-79309488 | None:intergenic | 25.0% |
| !!! | AAGGATGATAGTTTACTTTT+TGG | + | chr3_1:79309576-79309595 | Msa0378500:three_prime_UTR | 25.0% |
| !!! | AGGATGATAGTTTACTTTTT+GGG | + | chr3_1:79309577-79309596 | Msa0378500:three_prime_UTR | 25.0% |
| !!! | TTTTTGGGTTTGATTTTCTA+TGG | + | chr3_1:79309592-79309611 | Msa0378500:three_prime_UTR | 25.0% |
| !! | GCTTTTCCTTTTGAGTATTA+GGG | - | chr3_1:79306737-79306756 | None:intergenic | 30.0% |
| !! | AGCTTTTCCTTTTGAGTATT+AGG | - | chr3_1:79306738-79306757 | None:intergenic | 30.0% |
| CAGGTGAGATTGTATAATAT+TGG | - | chr3_1:79306838-79306857 | None:intergenic | 30.0% | |
| TTATGTACTTGAGATTGTTG+AGG | + | chr3_1:79306977-79306996 | Msa0378500:CDS | 30.0% | |
| GATGATGTGTATGTGAAATT+TGG | + | chr3_1:79306999-79307018 | Msa0378500:CDS | 30.0% | |
| AATGCTCTTAAAAGGAAAAG+AGG | + | chr3_1:79307215-79307234 | Msa0378500:CDS | 30.0% | |
| GATAATTAATGTGGAAAGCT+CGG | + | chr3_1:79307379-79307398 | Msa0378500:intron | 30.0% | |
| ! | TCCAAACCAAAAAAGTACAA+AGG | - | chr3_1:79307640-79307659 | None:intergenic | 30.0% |
| ATTGCATGCTTGATAAAAGT+TGG | - | chr3_1:79307781-79307800 | None:intergenic | 30.0% | |
| ! | TCTTTTCTTGATCATCATCT+TGG | + | chr3_1:79308062-79308081 | Msa0378500:CDS | 30.0% |
| GCTATTACTAATTAAGAGGA+TGG | - | chr3_1:79308102-79308121 | None:intergenic | 30.0% | |
| ! | ATGCAACAATTTTCCCAATT+GGG | + | chr3_1:79308263-79308282 | Msa0378500:intron | 30.0% |
| TCATGTTGTAGATCTTCTAA+AGG | + | chr3_1:79308334-79308353 | Msa0378500:intron | 30.0% | |
| AAATTGAGTTCTACAATTGG+TGG | + | chr3_1:79308820-79308839 | Msa0378500:intron | 30.0% | |
| ATAGAAATTAAAGATAGGGG+TGG | - | chr3_1:79309030-79309049 | None:intergenic | 30.0% | |
| !! | CACAAAGTTCATGTTTTTAC+TGG | + | chr3_1:79309082-79309101 | Msa0378500:intron | 30.0% |
| TTTACTGGATGTGTATATTG+GGG | + | chr3_1:79309097-79309116 | Msa0378500:intron | 30.0% | |
| CTAGATCTTCGCTAATTTAT+TGG | + | chr3_1:79309159-79309178 | Msa0378500:intron | 30.0% | |
| CAACATATGGATCAAAAAGA+GGG | - | chr3_1:79309326-79309345 | None:intergenic | 30.0% | |
| ACAACATATGGATCAAAAAG+AGG | - | chr3_1:79309327-79309346 | None:intergenic | 30.0% | |
| AACTACCACAACAATAAGAA+AGG | + | chr3_1:79309419-79309438 | Msa0378500:exon | 30.0% | |
| ATCATCCTTTCTTATTGTTG+TGG | - | chr3_1:79309427-79309446 | None:intergenic | 30.0% | |
| !! | AAGAAAGGATGATAGTTTTG+TGG | + | chr3_1:79309434-79309453 | Msa0378500:exon | 30.0% |
| TGATCAGAATTTAACACATG+AGG | + | chr3_1:79309494-79309513 | Msa0378500:three_prime_UTR | 30.0% | |
| GATCAGAATTTAACACATGA+GGG | + | chr3_1:79309495-79309514 | Msa0378500:three_prime_UTR | 30.0% | |
| ATCAGAATTTAACACATGAG+GGG | + | chr3_1:79309496-79309515 | Msa0378500:three_prime_UTR | 30.0% | |
| AATTACATCGGAGACAATTA+TGG | - | chr3_1:79309663-79309682 | None:intergenic | 30.0% | |
| GAACTTTATCAAGTCTGAGT+CGG | - | chr3_1:79306802-79306821 | None:intergenic | 35.0% | |
| GACTTGATAAAGTTCACAGA+TGG | + | chr3_1:79306807-79306826 | Msa0378500:CDS | 35.0% | |
| ! | TTGAATCATTTGAAGCGTGA+TGG | + | chr3_1:79306948-79306967 | Msa0378500:CDS | 35.0% |
| TCAAAGAAAAAGGGTAAGCT+TGG | + | chr3_1:79307038-79307057 | Msa0378500:CDS | 35.0% | |
| CACGTAGAAATGCTCTTAAA+AGG | + | chr3_1:79307207-79307226 | Msa0378500:CDS | 35.0% | |
| ! | ACGTTCACATCATTCTTTTC+TGG | - | chr3_1:79307257-79307276 | None:intergenic | 35.0% |
| AAGAATGATGTGAACGTGAA+TGG | + | chr3_1:79307260-79307279 | Msa0378500:CDS | 35.0% | |
| AGAATGATGTGAACGTGAAT+GGG | + | chr3_1:79307261-79307280 | Msa0378500:CDS | 35.0% | |
| ! | TGTCGATGAAAGTGTGAAAA+AGG | + | chr3_1:79307316-79307335 | Msa0378500:CDS | 35.0% |
| AAGGAGATTCAAGATGATGA+TGG | + | chr3_1:79307335-79307354 | Msa0378500:CDS | 35.0% | |
| !! | ATTCAAGATGATGATGGTGA+TGG | + | chr3_1:79307341-79307360 | Msa0378500:CDS | 35.0% |
| TGCATCAGTAACTATTGGAT+GGG | - | chr3_1:79307580-79307599 | None:intergenic | 35.0% | |
| ATCAGTGCATCAGTAACTAT+TGG | - | chr3_1:79307585-79307604 | None:intergenic | 35.0% | |
| !!! | GCCTTTGTACTTTTTTGGTT+TGG | + | chr3_1:79307636-79307655 | Msa0378500:intron | 35.0% |
| ATCAAGCATGCAATCCAAAT+TGG | + | chr3_1:79307787-79307806 | Msa0378500:intron | 35.0% | |
| AATCCAAATTGGTACTTTGC+TGG | + | chr3_1:79307798-79307817 | Msa0378500:intron | 35.0% | |
| !!! | CTGGTCGATTTTGTTTTTGT+TGG | + | chr3_1:79307817-79307836 | Msa0378500:intron | 35.0% |
| TCATCCTTAAGCAACACAAA+TGG | - | chr3_1:79307843-79307862 | None:intergenic | 35.0% | |
| AGGATAATGAAGTCAATCCA+AGG | + | chr3_1:79307874-79307893 | Msa0378500:intron | 35.0% | |
| !!! | AGATCTCTGTATTTTTGGAC+CGG | - | chr3_1:79307999-79308018 | None:intergenic | 35.0% |
| AAAAATACAGAGATCTGCGT+GGG | + | chr3_1:79308003-79308022 | Msa0378500:CDS | 35.0% | |
| TGATCATCATCTTGGTAAGT+AGG | + | chr3_1:79308070-79308089 | Msa0378500:intron | 35.0% | |
| TCATCTTGGTAAGTAGGATT+TGG | + | chr3_1:79308076-79308095 | Msa0378500:intron | 35.0% | |
| ! | GATGCAACAATTTTCCCAAT+TGG | + | chr3_1:79308262-79308281 | Msa0378500:intron | 35.0% |
| ! | AACAATTTTCCCAATTGGGT+TGG | + | chr3_1:79308267-79308286 | Msa0378500:intron | 35.0% |
| ACATCTCAAGATGTTTGTGT+TGG | + | chr3_1:79308572-79308591 | Msa0378500:intron | 35.0% | |
| CATCTCAAGATGTTTGTGTT+GGG | + | chr3_1:79308573-79308592 | Msa0378500:intron | 35.0% | |
| !! | TGCTAGAATTGAGAGTATCT+AGG | + | chr3_1:79308667-79308686 | Msa0378500:intron | 35.0% |
| AAAACTCTCTTGTAACTGTC+TGG | + | chr3_1:79308770-79308789 | Msa0378500:intron | 35.0% | |
| AATCTATTGGAGTCCAATTC+CGG | + | chr3_1:79308860-79308879 | Msa0378500:intron | 35.0% | |
| ATCTTCAAAAACTTGCGTCA+TGG | + | chr3_1:79309250-79309269 | Msa0378500:intron | 35.0% | |
| ! | AGACTTGGTAATTTGGTTAG+TGG | + | chr3_1:79309288-79309307 | Msa0378500:intron | 35.0% |
| AATCAGTATTCAACGCAAGA+CGG | + | chr3_1:79309358-79309377 | Msa0378500:intron | 35.0% | |
| GATGTATTACCACCAACAAT+AGG | + | chr3_1:79309552-79309571 | Msa0378500:three_prime_UTR | 35.0% | |
| ATTACCACCAACAATAGGAA+AGG | + | chr3_1:79309557-79309576 | Msa0378500:three_prime_UTR | 35.0% | |
| CTATCATCCTTTCCTATTGT+TGG | - | chr3_1:79309567-79309586 | None:intergenic | 35.0% | |
| !! | TGATTTTCTATGGTGATGCA+AGG | + | chr3_1:79309602-79309621 | Msa0378500:three_prime_UTR | 35.0% |
| TACACCAGTCTAGTTAGAAA+TGG | + | chr3_1:79309632-79309651 | Msa0378500:three_prime_UTR | 35.0% | |
| !! | TCTTTCTAGGGTTCACTGAA+GGG | - | chr3_1:79306659-79306678 | None:intergenic | 40.0% |
| TGAACCCTAGAAAGAGAACA+TGG | + | chr3_1:79306664-79306683 | Msa0378500:CDS | 40.0% | |
| GAACCCTAGAAAGAGAACAT+GGG | + | chr3_1:79306665-79306684 | Msa0378500:CDS | 40.0% | |
| GATCCCATGTTCTCTTTCTA+GGG | - | chr3_1:79306671-79306690 | None:intergenic | 40.0% | |
| TGATCCCATGTTCTCTTTCT+AGG | - | chr3_1:79306672-79306691 | None:intergenic | 40.0% | |
| TAGGGACCCTAATACTCAAA+AGG | + | chr3_1:79306728-79306747 | Msa0378500:CDS | 40.0% | |
| TTTGTTCCTGAAGATGAAGC+AGG | - | chr3_1:79306857-79306876 | None:intergenic | 40.0% | |
| ! | AGAAAATCTCAGAGAGTACG+AGG | + | chr3_1:79306905-79306924 | Msa0378500:intron | 40.0% |
| GGTGTTAAGAACTCTAAACG+TGG | + | chr3_1:79307059-79307078 | Msa0378500:CDS | 40.0% | |
| TATCTGCTGCTAAGAAACGT+TGG | + | chr3_1:79307150-79307169 | Msa0378500:CDS | 40.0% | |
| GAATGATGTGAACGTGAATG+GGG | + | chr3_1:79307262-79307281 | Msa0378500:CDS | 40.0% | |
| ! | TATGTGCCATTGTTCGAATG+CGG | + | chr3_1:79307476-79307495 | Msa0378500:intron | 40.0% |
| GGATCAAGATCTGAACCATT+TGG | - | chr3_1:79307559-79307578 | None:intergenic | 40.0% | |
| GTGCATCAGTAACTATTGGA+TGG | - | chr3_1:79307581-79307600 | None:intergenic | 40.0% | |
| !! | TTGGCCATTTGTGTTGCTTA+AGG | + | chr3_1:79307836-79307855 | Msa0378500:intron | 40.0% |
| AGTCAATCCAAGGAAAGTGA+CGG | + | chr3_1:79307884-79307903 | Msa0378500:CDS | 40.0% | |
| TTATGCTCTTCTTCGCAGTA+AGG | - | chr3_1:79307945-79307964 | None:intergenic | 40.0% | |
| AGAAATTAATGCTCGAACGC+CGG | + | chr3_1:79307977-79307996 | Msa0378500:CDS | 40.0% | |
| ! | CACGCAGATCTCTGTATTTT+TGG | - | chr3_1:79308004-79308023 | None:intergenic | 40.0% |
| CAAAAATACAGAGATCTGCG+TGG | + | chr3_1:79308002-79308021 | Msa0378500:CDS | 40.0% | |
| TCCATCATGATCTCCCTTAT+AGG | - | chr3_1:79308039-79308058 | None:intergenic | 40.0% | |
| ! | GTTGCATCGCATTTTCAAAG+TGG | - | chr3_1:79308250-79308269 | None:intergenic | 40.0% |
| GATGTTTGTGTTGGGAAACA+TGG | + | chr3_1:79308581-79308600 | Msa0378500:intron | 40.0% | |
| CTTTGTGACACTTCTGATTC+TGG | - | chr3_1:79309069-79309088 | None:intergenic | 40.0% | |
| !!! | AAGGATGATAGTTTTGTGGC+AGG | + | chr3_1:79309438-79309457 | Msa0378500:three_prime_UTR | 40.0% |
| CATTTGTGCCATGGAAAGTT+CGG | + | chr3_1:79309520-79309539 | Msa0378500:three_prime_UTR | 40.0% | |
| TCATCCTTTCCTATTGTTGG+TGG | - | chr3_1:79309564-79309583 | None:intergenic | 40.0% | |
| GCATCCATTTCTAACTAGAC+TGG | - | chr3_1:79309639-79309658 | None:intergenic | 40.0% | |
| !! | TTTCTAGGGTTCACTGAAGG+GGG | - | chr3_1:79306657-79306676 | None:intergenic | 45.0% |
| !! | CTTTCTAGGGTTCACTGAAG+GGG | - | chr3_1:79306658-79306677 | None:intergenic | 45.0% |
| !! | CTCTTTCTAGGGTTCACTGA+AGG | - | chr3_1:79306660-79306679 | None:intergenic | 45.0% |
| !! | ATCAAGTCTGAGTCGGCTTT+TGG | - | chr3_1:79306795-79306814 | None:intergenic | 45.0% |
| ATCTCACCTGCTTCATCTTC+AGG | + | chr3_1:79306848-79306867 | Msa0378500:CDS | 45.0% | |
| ! | AAATCTCAGAGAGTACGAGG+AGG | + | chr3_1:79306908-79306927 | Msa0378500:CDS | 45.0% |
| AGTACGAGGAGGAACGAAAT+AGG | + | chr3_1:79306919-79306938 | Msa0378500:CDS | 45.0% | |
| GACTTAGTCGTGTGACTTCA+AGG | + | chr3_1:79307087-79307106 | Msa0378500:CDS | 45.0% | |
| TAGTCGTGTGACTTCAAGGA+AGG | + | chr3_1:79307091-79307110 | Msa0378500:CDS | 45.0% | |
| AGTCGTGTGACTTCAAGGAA+GGG | + | chr3_1:79307092-79307111 | Msa0378500:CDS | 45.0% | |
| GGTAGGGGTAGGAAAATGAA+AGG | + | chr3_1:79307116-79307135 | Msa0378500:intron | 45.0% | |
| AAGCAACCGCATTCGAACAA+TGG | - | chr3_1:79307485-79307504 | None:intergenic | 45.0% | |
| ACCATTTGGTCTCGATCCAA+CGG | - | chr3_1:79307545-79307564 | None:intergenic | 45.0% | |
| !! | TGCACTGATTGTGTGAATGC+CGG | + | chr3_1:79307596-79307615 | Msa0378500:intron | 45.0% |
| TCAAGTCATATGCACGCAGT+TGG | + | chr3_1:79307671-79307690 | Msa0378500:intron | 45.0% | |
| TATGCACGCAGTTGGAACAT+CGG | + | chr3_1:79307679-79307698 | Msa0378500:intron | 45.0% | |
| ! | CGACCAGCAAAGTACCAATT+TGG | - | chr3_1:79307804-79307823 | None:intergenic | 45.0% |
| ! | CTAAACTCCGTCACTTTCCT+TGG | - | chr3_1:79307894-79307913 | None:intergenic | 45.0% |
| TGGGAGTAGCAAAGCCTATA+AGG | + | chr3_1:79308022-79308041 | Msa0378500:CDS | 45.0% | |
| GGGAGTAGCAAAGCCTATAA+GGG | + | chr3_1:79308023-79308042 | Msa0378500:CDS | 45.0% | |
| GCCTATAAGGGAGATCATGA+TGG | + | chr3_1:79308035-79308054 | Msa0378500:CDS | 45.0% | |
| AGCGAGTATCCAACCCAATT+GGG | - | chr3_1:79308279-79308298 | None:intergenic | 45.0% | |
| AAGCGAGTATCCAACCCAAT+TGG | - | chr3_1:79308280-79308299 | None:intergenic | 45.0% | |
| ! | TCCTGCGCGGATTTTTCTTT+TGG | + | chr3_1:79308399-79308418 | Msa0378500:CDS | 45.0% |
| ACCAAAAGAAAAATCCGCGC+AGG | - | chr3_1:79308403-79308422 | None:intergenic | 45.0% | |
| GAGTATCTAGGCATACGTCT+AGG | + | chr3_1:79308679-79308698 | Msa0378500:intron | 45.0% | |
| TAGGTCAACCCACGTATATG+TGG | + | chr3_1:79308698-79308717 | Msa0378500:intron | 45.0% | |
| AAACACGACCGAACTTTCCA+TGG | - | chr3_1:79309531-79309550 | None:intergenic | 45.0% | |
| ATGGAAAGTTCGGTCGTGTT+TGG | + | chr3_1:79309530-79309549 | Msa0378500:three_prime_UTR | 45.0% | |
| TGACTTCAAGGAAGGGTGGT+AGG | + | chr3_1:79307099-79307118 | Msa0378500:CDS | 50.0% | |
| GACTTCAAGGAAGGGTGGTA+GGG | + | chr3_1:79307100-79307119 | Msa0378500:CDS | 50.0% | |
| ACTTCAAGGAAGGGTGGTAG+GGG | + | chr3_1:79307101-79307120 | Msa0378500:CDS | 50.0% | |
| GTGAACGTGAATGGGGAAGA+AGG | + | chr3_1:79307269-79307288 | Msa0378500:CDS | 50.0% | |
| TCGATCCAACGGTTACCGAT+GGG | - | chr3_1:79307534-79307553 | None:intergenic | 50.0% | |
| ACCGTTGGATCGAGACCAAA+TGG | + | chr3_1:79307541-79307560 | Msa0378500:intron | 50.0% | |
| !! | GCACTGATTGTGTGAATGCC+GGG | + | chr3_1:79307597-79307616 | Msa0378500:intron | 50.0% |
| ! | CACTGATTGTGTGAATGCCG+GGG | + | chr3_1:79307598-79307617 | Msa0378500:intron | 50.0% |
| ACTGATTGTGTGAATGCCGG+GGG | + | chr3_1:79307599-79307618 | Msa0378500:intron | 50.0% | |
| GCAGGAGACGCAAAACTTTG+GGG | - | chr3_1:79308385-79308404 | None:intergenic | 50.0% | |
| CGCAGGAGACGCAAAACTTT+GGG | - | chr3_1:79308386-79308405 | None:intergenic | 50.0% | |
| ! | AAAGTTTTGCGTCTCCTGCG+CGG | + | chr3_1:79308386-79308405 | Msa0378500:CDS | 50.0% |
| TGGGAAACATGGCAAGAGCT+AGG | + | chr3_1:79308592-79308611 | Msa0378500:intron | 50.0% | |
| GGGAAACATGGCAAGAGCTA+GGG | + | chr3_1:79308593-79308612 | Msa0378500:intron | 50.0% | |
| AAACACGATGGATCCCTCCA+TGG | - | chr3_1:79309394-79309413 | None:intergenic | 50.0% | |
| ATGGAGGGATCCATCGTGTT+TGG | + | chr3_1:79309393-79309412 | Msa0378500:CDS | 50.0% | |
| GGTAGTTCGTCCAAACACGA+TGG | - | chr3_1:79309406-79309425 | None:intergenic | 50.0% | |
| ATGAGGGGACATTTGTGCCA+TGG | + | chr3_1:79309511-79309530 | Msa0378500:three_prime_UTR | 50.0% | |
| CGTGTGACTTCAAGGAAGGG+TGG | + | chr3_1:79307095-79307114 | Msa0378500:CDS | 55.0% | |
| CGAATGCGGTTGCTTCCAGT+CGG | + | chr3_1:79307490-79307509 | Msa0378500:intron | 55.0% | |
| ACTGCGTGGAAGTTACCGAC+TGG | - | chr3_1:79307508-79307527 | None:intergenic | 55.0% | |
| CTCGATCCAACGGTTACCGA+TGG | - | chr3_1:79307535-79307554 | None:intergenic | 55.0% | |
| GCGCAGGAGACGCAAAACTT+TGG | - | chr3_1:79308387-79308406 | None:intergenic | 55.0% | |
| ! | AAGACGGAGCGTTCATGCCA+TGG | + | chr3_1:79309374-79309393 | Msa0378500:CDS | 55.0% |
| CAAGGAAGGGTGGTAGGGGT+AGG | + | chr3_1:79307105-79307124 | Msa0378500:intron | 60.0% | |
| CTTCCACGCAGTCAGCCCAT+CGG | + | chr3_1:79307516-79307535 | Msa0378500:intron | 60.0% | |
| !! | TTACCGATGGGCTGACTGCG+TGG | - | chr3_1:79307522-79307541 | None:intergenic | 60.0% |
| GTCAGCCCATCGGTAACCGT+TGG | + | chr3_1:79307526-79307545 | Msa0378500:intron | 60.0% | |
| GCAAATTGCCTCAACGCCCC+CGG | - | chr3_1:79307618-79307637 | None:intergenic | 60.0% | |
| CACGCAGTTGGAACATCGGC+AGG | + | chr3_1:79307683-79307702 | Msa0378500:intron | 60.0% | |
| ! | ACGGAGCGTTCATGCCATGG+AGG | + | chr3_1:79309377-79309396 | Msa0378500:CDS | 60.0% |
| ! | CGGAGCGTTCATGCCATGGA+GGG | + | chr3_1:79309378-79309397 | Msa0378500:CDS | 60.0% |
| !! | TGTGAATGCCGGGGGCGTTG+AGG | + | chr3_1:79307607-79307626 | Msa0378500:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 79306648 | 79309687 | 79306648 | ID=Msa0378500;Name=Msa0378500 |
| chr3_1 | mRNA | 79306648 | 79309687 | 79306648 | ID=Msa0378500-mRNA-1;Parent=Msa0378500;Name=Msa0378500-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.4|0.5|1|0.2|0.5|6|252|347 |
| chr3_1 | exon | 79306648 | 79306879 | 79306648 | ID=Msa0378500-mRNA-1:exon:19399;Parent=Msa0378500-mRNA-1 |
| chr3_1 | exon | 79306907 | 79307122 | 79306907 | ID=Msa0378500-mRNA-1:exon:19400;Parent=Msa0378500-mRNA-1 |
| chr3_1 | exon | 79307138 | 79307370 | 79307138 | ID=Msa0378500-mRNA-1:exon:19401;Parent=Msa0378500-mRNA-1 |
| chr3_1 | exon | 79307876 | 79308083 | 79307876 | ID=Msa0378500-mRNA-1:exon:19402;Parent=Msa0378500-mRNA-1 |
| chr3_1 | exon | 79308345 | 79308427 | 79308345 | ID=Msa0378500-mRNA-1:exon:19403;Parent=Msa0378500-mRNA-1 |
| chr3_1 | exon | 79309364 | 79309687 | 79309364 | ID=Msa0378500-mRNA-1:exon:19404;Parent=Msa0378500-mRNA-1 |
| chr3_1 | CDS | 79306648 | 79306879 | 79306648 | ID=Msa0378500-mRNA-1:cds;Parent=Msa0378500-mRNA-1 |
| chr3_1 | CDS | 79306907 | 79307122 | 79306907 | ID=Msa0378500-mRNA-1:cds;Parent=Msa0378500-mRNA-1 |
| chr3_1 | CDS | 79307138 | 79307370 | 79307138 | ID=Msa0378500-mRNA-1:cds;Parent=Msa0378500-mRNA-1 |
| chr3_1 | CDS | 79307876 | 79308083 | 79307876 | ID=Msa0378500-mRNA-1:cds;Parent=Msa0378500-mRNA-1 |
| chr3_1 | CDS | 79308345 | 79308427 | 79308345 | ID=Msa0378500-mRNA-1:cds;Parent=Msa0378500-mRNA-1 |
| chr3_1 | CDS | 79309364 | 79309435 | 79309364 | ID=Msa0378500-mRNA-1:cds;Parent=Msa0378500-mRNA-1 |
| chr3_1 | three_prime_UTR | 79309436 | 79309687 | 79309436 | ID=Msa0378500-mRNA-1:three_prime_utr;Parent=Msa0378500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
