Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682530 | XP_013442327.1 | 95.620 | 274 | 12 | 0 | 1 | 274 | 1 | 274 | 0.0 | 547 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682530 | sp|Q84UV8|NEC3_NICLS | 51.087 | 276 | 123 | 8 | 1 | 273 | 3 | 269 | 1.77e-93 | 280 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682530 | A0A072TG98 | 95.620 | 274 | 12 | 0 | 1 | 274 | 1 | 274 | 0.0 | 547 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002930 | Msa0682530 | 0.814254 | 1.691855e-51 | -8.615850e-47 |
| Msa0022640 | Msa0682530 | 0.839224 | 1.800804e-57 | -8.615850e-47 |
| Msa0036430 | Msa0682530 | 0.824693 | 7.027599e-54 | -8.615850e-47 |
| Msa0050990 | Msa0682530 | 0.806942 | 6.436635e-50 | -8.615850e-47 |
| Msa0080990 | Msa0682530 | 0.814498 | 1.493900e-51 | -8.615850e-47 |
| Msa0084500 | Msa0682530 | 0.823798 | 1.140905e-53 | -8.615850e-47 |
| Msa0106790 | Msa0682530 | 0.837259 | 5.776134e-57 | -8.615850e-47 |
| Msa0110970 | Msa0682530 | 0.807437 | 5.056412e-50 | -8.615850e-47 |
| Msa0118380 | Msa0682530 | 0.828991 | 6.605892e-55 | -8.615850e-47 |
| Msa0118400 | Msa0682530 | 0.848664 | 5.306633e-60 | -8.615850e-47 |
| Msa0641900 | Msa0682530 | 0.801083 | 1.064143e-48 | -8.615850e-47 |
| Msa0649970 | Msa0682530 | 0.822479 | 2.317799e-53 | -8.615850e-47 |
| Msa0663680 | Msa0682530 | 0.809201 | 2.127111e-50 | -8.615850e-47 |
| Msa0667850 | Msa0682530 | 0.809828 | 1.560487e-50 | -8.615850e-47 |
| Msa0682530 | Msa0707220 | 0.820951 | 5.228384e-53 | -8.615850e-47 |
| Msa0682530 | Msa0717670 | 0.824547 | 7.608684e-54 | -8.615850e-47 |
| Msa0682530 | Msa0748000 | 0.812426 | 4.264315e-51 | -8.615850e-47 |
| Msa0682530 | Msa0754030 | 0.815001 | 1.156116e-51 | -8.615850e-47 |
| Msa0682530 | Msa0807110 | 0.817008 | 4.119824e-52 | -8.615850e-47 |
| Msa0682530 | Msa0815320 | 0.831244 | 1.862839e-55 | -8.615850e-47 |
| Msa0682530 | Msa0833040 | 0.811660 | 6.265602e-51 | -8.615850e-47 |
| Msa0682530 | Msa0843640 | 0.848052 | 7.833604e-60 | -8.615850e-47 |
| Msa0682530 | Msa0870620 | 0.846047 | 2.775278e-59 | -8.615850e-47 |
| Msa0682530 | Msa0870690 | 0.800164 | 1.638788e-48 | -8.615850e-47 |
| Msa0682530 | Msa0872420 | 0.820716 | 5.921671e-53 | -8.615850e-47 |
| Msa0682530 | Msa0885060 | 0.842946 | 1.895025e-58 | -8.615850e-47 |
| Msa0682530 | Msa0905720 | 0.835507 | 1.611934e-56 | -8.615850e-47 |
| Msa0682530 | Msa0957640 | 0.810640 | 1.042336e-50 | -8.615850e-47 |
| Msa0682530 | Msa0974910 | 0.816515 | 5.315082e-52 | -8.615850e-47 |
| Msa0682530 | Msa0999340 | 0.800349 | 1.502612e-48 | -8.615850e-47 |
| Msa0682530 | Msa0999350 | 0.819486 | 1.132334e-52 | -8.615850e-47 |
| Msa0682530 | Msa0999360 | 0.847816 | 9.102267e-60 | -8.615850e-47 |
| Msa0682530 | Msa0999400 | 0.811917 | 5.508858e-51 | -8.615850e-47 |
| Msa0682530 | Msa0999410 | 0.827181 | 1.802526e-54 | -8.615850e-47 |
| Msa0682530 | Msa1010110 | 0.814838 | 1.256304e-51 | -8.615850e-47 |
| Msa0682530 | Msa1034680 | 0.833096 | 6.490740e-56 | -8.615850e-47 |
| Msa0682530 | Msa1082500 | 0.800744 | 1.248598e-48 | -8.615850e-47 |
| Msa0682530 | Msa1105890 | 0.817152 | 3.824095e-52 | -8.615850e-47 |
| Msa0682530 | Msa1162040 | 0.805523 | 1.281003e-49 | -8.615850e-47 |
| Msa0682530 | Msa1179280 | 0.814276 | 1.672748e-51 | -8.615850e-47 |
| Msa0682530 | Msa1196080 | 0.802160 | 6.401393e-49 | -8.615850e-47 |
| Msa0682530 | Msa1198090 | 0.800203 | 1.609122e-48 | -8.615850e-47 |
| Msa0682530 | Msa1201110 | 0.805590 | 1.240620e-49 | -8.615850e-47 |
| Msa0682530 | Msa1228190 | 0.811228 | 7.774322e-51 | -8.615850e-47 |
| Msa0682530 | Msa1233560 | 0.819855 | 9.327481e-53 | -8.615850e-47 |
| Msa0682530 | Msa1248040 | 0.822615 | 2.154583e-53 | -8.615850e-47 |
| Msa0682530 | Msa1271260 | 0.831160 | 1.953294e-55 | -8.615850e-47 |
| Msa0682530 | Msa1289280 | 0.821412 | 4.093100e-53 | -8.615850e-47 |
| Msa0682530 | Msa1292010 | 0.817873 | 2.630465e-52 | -8.615850e-47 |
| Msa0682530 | Msa1308380 | 0.810350 | 1.203937e-50 | -8.615850e-47 |
| Msa0682530 | Msa1313970 | 0.806865 | 6.684004e-50 | -8.615850e-47 |
| Msa0682530 | Msa1378770 | 0.810134 | 1.340780e-50 | -8.615850e-47 |
| Msa0682530 | Msa1379970 | 0.804464 | 2.133641e-49 | -8.615850e-47 |
| Msa0682530 | Msa1408870 | 0.817399 | 3.364138e-52 | -8.615850e-47 |
| Msa0682530 | Msa1420060 | 0.826460 | 2.679885e-54 | -8.615850e-47 |
| Msa0682530 | Msa1423990 | 0.802061 | 6.707902e-49 | -8.615850e-47 |
| Msa0682530 | Msa1424690 | 0.986654 | 1.628252e-167 | -8.615850e-47 |
| Msa0682530 | Msa1453710 | 0.821212 | 4.553170e-53 | -8.615850e-47 |
| Msa0130570 | Msa0682530 | 0.828577 | 8.319216e-55 | -8.615850e-47 |
| Msa0141600 | Msa0682530 | 0.821972 | 3.038737e-53 | -8.615850e-47 |
| Msa0147560 | Msa0682530 | 0.818736 | 1.677554e-52 | -8.615850e-47 |
| Msa0153420 | Msa0682530 | 0.803749 | 3.004895e-49 | -8.615850e-47 |
| Msa0161680 | Msa0682530 | 0.843649 | 1.230675e-58 | -8.615850e-47 |
| Msa0173990 | Msa0682530 | 0.841899 | 3.591265e-58 | -8.615850e-47 |
| Msa0176470 | Msa0682530 | 0.814713 | 1.339094e-51 | -8.615850e-47 |
| Msa0197660 | Msa0682530 | 0.824112 | 9.629251e-54 | -8.615850e-47 |
| Msa0203030 | Msa0682530 | 0.833162 | 6.249183e-56 | -8.615850e-47 |
| Msa0219190 | Msa0682530 | 0.806568 | 7.724334e-50 | -8.615850e-47 |
| Msa0219310 | Msa0682530 | 0.800825 | 1.201650e-48 | -8.615850e-47 |
| Msa0221090 | Msa0682530 | 0.840125 | 1.049387e-57 | -8.615850e-47 |
| Msa0236110 | Msa0682530 | 0.827126 | 1.858405e-54 | -8.615850e-47 |
| Msa0371540 | Msa0682530 | 0.805947 | 1.043763e-49 | -8.615850e-47 |
| Msa0378500 | Msa0682530 | 0.839521 | 1.508144e-57 | -8.615850e-47 |
| Msa0412800 | Msa0682530 | 0.817564 | 3.088833e-52 | -8.615850e-47 |
| Msa0413930 | Msa0682530 | 0.814867 | 1.237761e-51 | -8.615850e-47 |
| Msa0419970 | Msa0682530 | 0.814455 | 1.527326e-51 | -8.615850e-47 |
| Msa0436500 | Msa0682530 | 0.830998 | 2.141535e-55 | -8.615850e-47 |
| Msa0444010 | Msa0682530 | 0.803157 | 3.986189e-49 | -8.615850e-47 |
| Msa0465930 | Msa0682530 | 0.801239 | 9.890489e-49 | -8.615850e-47 |
| Msa0466050 | Msa0682530 | 0.808242 | 3.410492e-50 | -8.615850e-47 |
| Msa0466060 | Msa0682530 | 0.809522 | 1.815463e-50 | -8.615850e-47 |
| Msa0239800 | Msa0682530 | 0.825612 | 4.262964e-54 | -8.615850e-47 |
| Msa0242480 | Msa0682530 | 0.808487 | 3.022880e-50 | -8.615850e-47 |
| Msa0262560 | Msa0682530 | 0.837173 | 6.076782e-57 | -8.615850e-47 |
| Msa0273990 | Msa0682530 | 0.816010 | 6.894258e-52 | -8.615850e-47 |
| Msa0277820 | Msa0682530 | 0.800494 | 1.403872e-48 | -8.615850e-47 |
| Msa0298240 | Msa0682530 | 0.804371 | 2.230456e-49 | -8.615850e-47 |
| Msa0314630 | Msa0682530 | 0.827774 | 1.299070e-54 | -8.615850e-47 |
| Msa0317510 | Msa0682530 | 0.832222 | 1.068944e-55 | -8.615850e-47 |
| Msa0322830 | Msa0682530 | 0.854500 | 1.181078e-61 | -8.615850e-47 |
| Msa0322840 | Msa0682530 | 0.825407 | 4.767662e-54 | -8.615850e-47 |
| Msa0322860 | Msa0682530 | 0.831615 | 1.509485e-55 | -8.615850e-47 |
| Msa0323610 | Msa0682530 | 0.806760 | 7.033230e-50 | -8.615850e-47 |
| Msa0329620 | Msa0682530 | 0.801612 | 8.294736e-49 | -8.615850e-47 |
| Msa0331540 | Msa0682530 | 0.811025 | 8.604906e-51 | -8.615850e-47 |
| Msa0337850 | Msa0682530 | 0.808482 | 3.030417e-50 | -8.615850e-47 |
| Msa0490480 | Msa0682530 | 0.805868 | 1.084124e-49 | -8.615850e-47 |
| Msa0503580 | Msa0682530 | 0.813056 | 3.104665e-51 | -8.615850e-47 |
| Msa0517330 | Msa0682530 | 0.808203 | 3.476134e-50 | -8.615850e-47 |
| Msa0517340 | Msa0682530 | 0.811985 | 5.322141e-51 | -8.615850e-47 |
| Msa0517350 | Msa0682530 | 0.820526 | 6.545720e-53 | -8.615850e-47 |
| Msa0584130 | Msa0682530 | 0.817551 | 3.110044e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682530 | MtrunA17_Chr4g0028741 | 95.620 | 274 | 12 | 0 | 1 | 274 | 1 | 274 | 0.0 | 547 |
| Msa0682530 | MtrunA17_Chr4g0028711 | 72.862 | 269 | 70 | 3 | 1 | 268 | 1 | 267 | 6.04e-138 | 389 |
| Msa0682530 | MtrunA17_Chr4g0028721 | 72.603 | 219 | 57 | 3 | 31 | 248 | 5 | 221 | 2.32e-114 | 329 |
| Msa0682530 | MtrunA17_Chr1g0180371 | 49.219 | 256 | 120 | 5 | 21 | 271 | 24 | 274 | 2.70e-88 | 264 |
| Msa0682530 | MtrunA17_Chr1g0180331 | 45.818 | 275 | 142 | 4 | 1 | 270 | 3 | 275 | 1.21e-84 | 254 |
| Msa0682530 | MtrunA17_Chr7g0257091 | 46.768 | 263 | 130 | 6 | 7 | 265 | 2 | 258 | 1.14e-77 | 236 |
| Msa0682530 | MtrunA17_Chr4g0028731 | 52.301 | 239 | 55 | 5 | 31 | 268 | 5 | 185 | 8.70e-73 | 221 |
| Msa0682530 | MtrunA17_Chr7g0264911 | 50.476 | 210 | 95 | 4 | 65 | 267 | 1 | 208 | 1.49e-65 | 204 |
| Msa0682530 | MtrunA17_Chr1g0178591 | 39.552 | 268 | 153 | 6 | 9 | 270 | 1 | 265 | 6.25e-63 | 199 |
| Msa0682530 | MtrunA17_Chr1g0178601 | 39.483 | 271 | 151 | 7 | 6 | 270 | 2 | 265 | 1.98e-59 | 189 |
| Msa0682530 | MtrunA17_Chr1g0178541 | 44.526 | 137 | 71 | 3 | 139 | 270 | 43 | 179 | 6.03e-34 | 121 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682530 | AT1G08080.1 | 50.763 | 262 | 125 | 4 | 7 | 267 | 12 | 270 | 7.67e-94 | 278 |
| Msa0682530 | AT2G28210.1 | 48.162 | 272 | 134 | 5 | 1 | 267 | 1 | 270 | 1.81e-91 | 272 |
| Msa0682530 | AT1G08065.1 | 47.955 | 269 | 133 | 6 | 3 | 267 | 2 | 267 | 1.26e-82 | 249 |
| Msa0682530 | AT4G20990.1 | 43.939 | 264 | 139 | 4 | 5 | 265 | 3 | 260 | 5.83e-77 | 235 |
| Msa0682530 | AT5G04180.1 | 45.349 | 258 | 134 | 4 | 13 | 268 | 6 | 258 | 7.67e-71 | 219 |
| Msa0682530 | AT4G21000.1 | 42.439 | 205 | 113 | 2 | 27 | 231 | 28 | 227 | 4.20e-60 | 191 |
| Msa0682530 | AT3G52720.3 | 38.806 | 268 | 150 | 6 | 7 | 267 | 4 | 264 | 1.47e-58 | 188 |
| Msa0682530 | AT3G52720.4 | 38.806 | 268 | 150 | 6 | 7 | 267 | 4 | 264 | 1.47e-58 | 188 |
| Msa0682530 | AT3G52720.1 | 38.806 | 268 | 150 | 6 | 7 | 267 | 4 | 264 | 1.47e-58 | 188 |
| Msa0682530 | AT5G56330.1 | 40.909 | 242 | 99 | 4 | 29 | 267 | 133 | 333 | 2.00e-55 | 182 |
| Msa0682530 | AT5G56330.2 | 48.588 | 177 | 86 | 4 | 29 | 202 | 133 | 307 | 1.56e-51 | 171 |
| Msa0682530 | AT3G52720.2 | 38.362 | 232 | 129 | 6 | 7 | 231 | 4 | 228 | 5.45e-46 | 154 |
| Msa0682530 | AT2G28210.2 | 43.750 | 144 | 75 | 4 | 1 | 139 | 1 | 143 | 1.37e-36 | 128 |
Find 65 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATGCTTATTACAATTAA+AGG | 0.129446 | 4_4:-44226631 | None:intergenic |
| GTCTATAGATTCTTCTATTT+AGG | 0.254410 | 4_4:+44226600 | Msa0682530:three_prime_UTR |
| TGCACTAAGCGGTTGTTTAA+TGG | 0.271511 | 4_4:-44226519 | None:intergenic |
| AAGCTAGTTGTAAATTAAAA+TGG | 0.285826 | 4_4:+44223399 | Msa0682530:exon |
| GGTTAATTAATTTGATATAT+AGG | 0.296330 | 4_4:-44223372 | None:intergenic |
| CCAGCAATGTCTCAAGAATT+TGG | 0.301397 | 4_4:+44223487 | Msa0682530:CDS |
| GATCTGAAGTGGTCCTAAAT+TGG | 0.303051 | 4_4:-44223850 | None:intergenic |
| TTAATTTACAACTAGCTTAG+AGG | 0.336479 | 4_4:-44223394 | None:intergenic |
| ATCACTGCTGTTTCATTCAA+TGG | 0.349501 | 4_4:-44225682 | None:intergenic |
| GTCCGCTAGGACCACCGAAT+TGG | 0.354995 | 4_4:+44223739 | Msa0682530:CDS |
| CTCTGATCACTCAAATCAAT+TGG | 0.362232 | 4_4:-44223816 | None:intergenic |
| GCCAGATCCATTCTTGTCAT+TGG | 0.370744 | 4_4:+44225729 | Msa0682530:CDS |
| AGTGTTCAAATATCCAATTT+AGG | 0.376254 | 4_4:+44223837 | Msa0682530:CDS |
| TCAAGCTATCTACAAATTGA+TGG | 0.380494 | 4_4:+44224046 | Msa0682530:CDS |
| GAAGTGTCACTCTAGAATTC+AGG | 0.382104 | 4_4:+44226651 | Msa0682530:three_prime_UTR |
| GAACAGCAGCTTGAAGCAAT+TGG | 0.399825 | 4_4:-44226198 | None:intergenic |
| TCCGCTAGGACCACCGAATT+GGG | 0.400186 | 4_4:+44223740 | Msa0682530:CDS |
| ATTGGAGTATTGTACACAAT+TGG | 0.400371 | 4_4:+44225703 | Msa0682530:CDS |
| CCAAATTCTTGAGACATTGC+TGG | 0.404913 | 4_4:-44223487 | None:intergenic |
| GTGTTGAAATTAATCTGATT+AGG | 0.417187 | 4_4:-44225941 | None:intergenic |
| AATGGCAAAGCTTACTTCAC+TGG | 0.426466 | 4_4:+44223417 | Msa0682530:exon |
| TAATTTGATATATAGGATAG+TGG | 0.427727 | 4_4:-44223365 | None:intergenic |
| AGTGGGGTGTTGTACTGAAA+AGG | 0.431208 | 4_4:-44223347 | None:intergenic |
| GTTCGATCTAGAGTTACATT+TGG | 0.435599 | 4_4:+44225648 | Msa0682530:CDS |
| CATATAGTTGGAAGATGACT+TGG | 0.440855 | 4_4:+44225865 | Msa0682530:intron |
| TATGTACCTTACACCATTGA+TGG | 0.448047 | 4_4:-44224119 | None:intergenic |
| CATGCAGTGAAAATGTTACT+TGG | 0.451442 | 4_4:+44226005 | Msa0682530:CDS |
| TTGAATGAAACAGCAGTGAT+TGG | 0.455526 | 4_4:+44225685 | Msa0682530:CDS |
| GGTTTAATGTGTCCCCAATT+CGG | 0.461574 | 4_4:-44223753 | None:intergenic |
| ACCAATGACAAGAATGGATC+TGG | 0.463795 | 4_4:-44225730 | None:intergenic |
| CCATCTGAACACACCATCAA+TGG | 0.480971 | 4_4:+44224106 | Msa0682530:CDS |
| ACCCACTGCGCTTTCTTCCC+CGG | 0.482176 | 4_4:-44225909 | None:intergenic |
| ACTAAGTTCAATTATGATGA+AGG | 0.484674 | 4_4:+44223714 | Msa0682530:CDS |
| AATTTGATATATAGGATAGT+GGG | 0.488660 | 4_4:-44223364 | None:intergenic |
| TAAGTTACCAATGACAAGAA+TGG | 0.494347 | 4_4:-44225736 | None:intergenic |
| CAATTTCTAATAACACTGCC+GGG | 0.499821 | 4_4:+44225891 | Msa0682530:CDS |
| CTGGGCATGATGAAAGCAAA+AGG | 0.501092 | 4_4:-44223468 | None:intergenic |
| TTAGTGCAGCTGAACTGTTA+TGG | 0.502021 | 4_4:+44226534 | Msa0682530:CDS |
| ATGAACTTCTACAGTTCCAT+TGG | 0.505066 | 4_4:+44224077 | Msa0682530:CDS |
| AACAAAGTATTATAGATACA+TGG | 0.509158 | 4_4:+44225964 | Msa0682530:CDS |
| GCAATTTCTAATAACACTGC+CGG | 0.513543 | 4_4:+44225890 | Msa0682530:CDS |
| TAATTTACAACTAGCTTAGA+GGG | 0.521301 | 4_4:-44223393 | None:intergenic |
| CAAATTCTTGAGACATTGCT+GGG | 0.521315 | 4_4:-44223486 | None:intergenic |
| CGGTTGTTTAATGGCTGCAA+TGG | 0.524998 | 4_4:-44226510 | None:intergenic |
| CAGCTGAACTGTTATGGAGC+TGG | 0.535050 | 4_4:+44226540 | Msa0682530:CDS |
| AACACACCATCAATGGTGTA+AGG | 0.535872 | 4_4:+44224113 | Msa0682530:CDS |
| CCATTGATGGTGTGTTCAGA+TGG | 0.547509 | 4_4:-44224106 | None:intergenic |
| TACTTGGACAGTAATTAAAG+AGG | 0.553080 | 4_4:+44226021 | Msa0682530:CDS |
| ATAGTTGGAAGATGACTTGG+AGG | 0.569426 | 4_4:+44225868 | Msa0682530:intron |
| TATGATGAAGGGAGTCCGCT+AGG | 0.573502 | 4_4:+44223726 | Msa0682530:CDS |
| GCCGGGGAAGAAAGCGCAGT+GGG | 0.582727 | 4_4:+44225908 | Msa0682530:CDS |
| AAACAGGGGTCATGATGTCA+AGG | 0.587919 | 4_4:+44223902 | Msa0682530:CDS |
| GACACATTAAACCCAACGAA+TGG | 0.596322 | 4_4:+44223763 | Msa0682530:CDS |
| CTAAGTTCAATTATGATGAA+GGG | 0.600898 | 4_4:+44223715 | Msa0682530:CDS |
| GGATTGTAATTGATCTGAAG+TGG | 0.603927 | 4_4:-44223861 | None:intergenic |
| ATTTGATATATAGGATAGTG+GGG | 0.610122 | 4_4:-44223363 | None:intergenic |
| CCCCAATTCGGTGGTCCTAG+CGG | 0.613572 | 4_4:-44223741 | None:intergenic |
| CCGCTAGGACCACCGAATTG+GGG | 0.623257 | 4_4:+44223741 | Msa0682530:CDS |
| TATAGACTATGATGAAGACT+AGG | 0.624211 | 4_4:-44226584 | None:intergenic |
| ACAAAGTATTATAGATACAT+GGG | 0.632114 | 4_4:+44225965 | Msa0682530:CDS |
| AACAGTTCAGCTGCACTAAG+CGG | 0.632783 | 4_4:-44226530 | None:intergenic |
| TTAATGTGTCCCCAATTCGG+TGG | 0.639897 | 4_4:-44223750 | None:intergenic |
| GTTCAGATGGAGTATGCCAA+TGG | 0.641032 | 4_4:-44224093 | None:intergenic |
| AATTTCTAATAACACTGCCG+GGG | 0.687577 | 4_4:+44225892 | Msa0682530:CDS |
| TGCCGGGGAAGAAAGCGCAG+TGG | 0.694489 | 4_4:+44225907 | Msa0682530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTAATTTTTTAATTTAAGT+GGG | - | chr4_4:44224829-44224848 | None:intergenic | 10.0% |
| !!! | ATGTAATTTTTTAATTTAAG+TGG | - | chr4_4:44224830-44224849 | None:intergenic | 10.0% |
| !!! | ATCAGTTTTTTTTTTTTTTT+TGG | + | chr4_4:44225354-44225373 | Msa0682530:intron | 10.0% |
| !!! | AAAAGAGTATAAAATTAAAT+GGG | - | chr4_4:44226141-44226160 | None:intergenic | 10.0% |
| !!! | GGTTAATTAATTTGATATAT+AGG | - | chr4_4:44223375-44223394 | None:intergenic | 15.0% |
| !! | TTATAATTATCATGAATCAA+GGG | - | chr4_4:44224156-44224175 | None:intergenic | 15.0% |
| !!! | TTAGTTTGAAAGTTTTATAT+TGG | + | chr4_4:44224572-44224591 | Msa0682530:intron | 15.0% |
| !!! | GGTATTATAATTTTTTTTTG+AGG | - | chr4_4:44224802-44224821 | None:intergenic | 15.0% |
| !!! | TAATTTTTTAATTTAAGTGG+GGG | - | chr4_4:44224827-44224846 | None:intergenic | 15.0% |
| !!! | GTAATTTTTTAATTTAAGTG+GGG | - | chr4_4:44224828-44224847 | None:intergenic | 15.0% |
| !!! | AAATACGTTTTTATTTTACT+CGG | + | chr4_4:44225178-44225197 | Msa0682530:intron | 15.0% |
| !! | AAAACTAAATATCCAATAAA+AGG | - | chr4_4:44225290-44225309 | None:intergenic | 15.0% |
| !!! | AGTTTTTTTTTTTTTTTTGG+TGG | + | chr4_4:44225357-44225376 | Msa0682530:intron | 15.0% |
| !!! | TTTCATTTTTTTCATATAGT+TGG | + | chr4_4:44225853-44225872 | Msa0682530:intron | 15.0% |
| !! | AATTTCTAATCAAATAAATG+TGG | - | chr4_4:44226097-44226116 | None:intergenic | 15.0% |
| !!! | GAAAAGAGTATAAAATTAAA+TGG | - | chr4_4:44226142-44226161 | None:intergenic | 15.0% |
| !! | AATTTGATATATAGGATAGT+GGG | - | chr4_4:44223367-44223386 | None:intergenic | 20.0% |
| !! | TAATTTGATATATAGGATAG+TGG | - | chr4_4:44223368-44223387 | None:intergenic | 20.0% |
| !! | AAGCTAGTTGTAAATTAAAA+TGG | + | chr4_4:44223399-44223418 | Msa0682530:exon | 20.0% |
| !! | TGTTTATACATGATATTGTT+CGG | - | chr4_4:44223632-44223651 | None:intergenic | 20.0% |
| !! | TTATTCAGTGAATTTGAAAA+CGG | - | chr4_4:44223661-44223680 | None:intergenic | 20.0% |
| !! | ATGATTCAGAAAATTATTAG+AGG | - | chr4_4:44223993-44224012 | None:intergenic | 20.0% |
| !!! | GAATCATTTTTTCTATGAAT+AGG | + | chr4_4:44224006-44224025 | Msa0682530:intron | 20.0% |
| !! | CTTATAATTATCATGAATCA+AGG | - | chr4_4:44224157-44224176 | None:intergenic | 20.0% |
| !!! | TTATTTGTTGTTAGAAGATT+TGG | + | chr4_4:44224226-44224245 | Msa0682530:intron | 20.0% |
| !!! | TATTTGTTGTTAGAAGATTT+GGG | + | chr4_4:44224227-44224246 | Msa0682530:intron | 20.0% |
| !!! | ATTAAGGGAATGAAAATTTT+TGG | + | chr4_4:44224401-44224420 | Msa0682530:intron | 20.0% |
| !!! | AATTTTCTTCTTATAATCCA+CGG | + | chr4_4:44224437-44224456 | Msa0682530:intron | 20.0% |
| !! | TAAAACTTTCAAACTAATGT+TGG | - | chr4_4:44224569-44224588 | None:intergenic | 20.0% |
| !!! | TGAACTAAGTTTTAAGATAA+GGG | - | chr4_4:44224638-44224657 | None:intergenic | 20.0% |
| !!! | ATGAACTAAGTTTTAAGATA+AGG | - | chr4_4:44224639-44224658 | None:intergenic | 20.0% |
| !!! | TTAATACCATCTTAGAATTT+TGG | - | chr4_4:44224681-44224700 | None:intergenic | 20.0% |
| !!! | AAATTCTAAGATGGTATTAA+AGG | + | chr4_4:44224681-44224700 | Msa0682530:intron | 20.0% |
| !!! | AATACGTTTTTATTTTACTC+GGG | + | chr4_4:44225179-44225198 | Msa0682530:intron | 20.0% |
| !!! | AAAAAACTGATTTATATGTG+AGG | - | chr4_4:44225345-44225364 | None:intergenic | 20.0% |
| !!! | ATCACTCATATAGTTTTTAT+TGG | + | chr4_4:44225564-44225583 | Msa0682530:intron | 20.0% |
| !!! | CTAATAATTAAATTTGTTGC+AGG | + | chr4_4:44225626-44225645 | Msa0682530:intron | 20.0% |
| !!! | AACAAAGTATTATAGATACA+TGG | + | chr4_4:44225964-44225983 | Msa0682530:CDS | 20.0% |
| !!! | ACAAAGTATTATAGATACAT+GGG | + | chr4_4:44225965-44225984 | Msa0682530:CDS | 20.0% |
| !!! | TTTTATAAGACTAAAAATCG+AGG | + | chr4_4:44226275-44226294 | Msa0682530:intron | 20.0% |
| !!! | AATCGAGGAAATTTTTTAAA+AGG | + | chr4_4:44226290-44226309 | Msa0682530:intron | 20.0% |
| !! | AAAGGACTAAAATAAAAAGT+TGG | + | chr4_4:44226308-44226327 | Msa0682530:intron | 20.0% |
| !! | GCAAAATATGAACTAAATTA+GGG | - | chr4_4:44226364-44226383 | None:intergenic | 20.0% |
| !! | TGCAAAATATGAACTAAATT+AGG | - | chr4_4:44226365-44226384 | None:intergenic | 20.0% |
| !! | TTCATGCTTATTACAATTAA+AGG | - | chr4_4:44226634-44226653 | None:intergenic | 20.0% |
| ! | ATTTGATATATAGGATAGTG+GGG | - | chr4_4:44223366-44223385 | None:intergenic | 25.0% |
| !! | TAATTTACAACTAGCTTAGA+GGG | - | chr4_4:44223396-44223415 | None:intergenic | 25.0% |
| !! | TTAATTTACAACTAGCTTAG+AGG | - | chr4_4:44223397-44223416 | None:intergenic | 25.0% |
| ! | ACAAAACAGCTAAGAAAAAA+AGG | - | chr4_4:44223524-44223543 | None:intergenic | 25.0% |
| ! | ACTAAGTTCAATTATGATGA+AGG | + | chr4_4:44223714-44223733 | Msa0682530:CDS | 25.0% |
| ! | CTAAGTTCAATTATGATGAA+GGG | + | chr4_4:44223715-44223734 | Msa0682530:CDS | 25.0% |
| ! | AGTGTTCAAATATCCAATTT+AGG | + | chr4_4:44223837-44223856 | Msa0682530:CDS | 25.0% |
| !!! | TTTTTAAGAGTTGCATTAGA+GGG | - | chr4_4:44223885-44223904 | None:intergenic | 25.0% |
| ! | TAATGCAACTCTTAAAAACA+GGG | + | chr4_4:44223887-44223906 | Msa0682530:CDS | 25.0% |
| ! | GTAAATGTGCAAAAAACAAA+AGG | - | chr4_4:44224288-44224307 | None:intergenic | 25.0% |
| ! | CATGATTTGAATTGATGTTA+TGG | - | chr4_4:44224473-44224492 | None:intergenic | 25.0% |
| ! | TCATTACTTACAAACATATG+TGG | - | chr4_4:44224612-44224631 | None:intergenic | 25.0% |
| ! | CATATGTTTGTAAGTAATGA+CGG | + | chr4_4:44224612-44224631 | Msa0682530:intron | 25.0% |
| ! | GTGATTATACAAATTGATAG+TGG | - | chr4_4:44224935-44224954 | None:intergenic | 25.0% |
| ! | ACTTAATCAGTCAATTTGAA+AGG | + | chr4_4:44224953-44224972 | Msa0682530:intron | 25.0% |
| !! | AATTTACTTAACGTGTCATT+TGG | - | chr4_4:44225065-44225084 | None:intergenic | 25.0% |
| !!! | GCTCGTTCTATTTTTAAAAT+AGG | - | chr4_4:44225205-44225224 | None:intergenic | 25.0% |
| ! | AAAAGGTTATATCTCATCTA+AGG | - | chr4_4:44225273-44225292 | None:intergenic | 25.0% |
| !! | GATGAGATATAACCTTTTAT+TGG | + | chr4_4:44225275-44225294 | Msa0682530:intron | 25.0% |
| !!! | TTTTTTTTTTTTTTGGTGGC+TGG | + | chr4_4:44225361-44225380 | Msa0682530:intron | 25.0% |
| !!! | TTTTTTTTTTTTTGGTGGCT+GGG | + | chr4_4:44225362-44225381 | Msa0682530:intron | 25.0% |
| !!! | AACACCATACAGTTTTTTTT+TGG | + | chr4_4:44225490-44225509 | Msa0682530:intron | 25.0% |
| ! | TAAGCCAAAAAAAAACTGTA+TGG | - | chr4_4:44225497-44225516 | None:intergenic | 25.0% |
| ! | GTGTTGAAATTAATCTGATT+AGG | - | chr4_4:44225944-44225963 | None:intergenic | 25.0% |
| !! | TATACTCTTTTCAAATGACT+AGG | + | chr4_4:44226150-44226169 | Msa0682530:intron | 25.0% |
| ! | GTCTATAGATTCTTCTATTT+AGG | + | chr4_4:44226600-44226619 | Msa0682530:three_prime_UTR | 25.0% |
| TGTTCGGAATAAAAAGTTGT+AGG | - | chr4_4:44223616-44223635 | None:intergenic | 30.0% | |
| ! | ATATTTGATGACATTTGCAG+AGG | + | chr4_4:44223686-44223705 | Msa0682530:intron | 30.0% |
| ! | GAATGGTTTTTGTGCAAAAA+TGG | + | chr4_4:44223780-44223799 | Msa0682530:CDS | 30.0% |
| !! | GTTTTTAAGAGTTGCATTAG+AGG | - | chr4_4:44223886-44223905 | None:intergenic | 30.0% |
| CTAATGCAACTCTTAAAAAC+AGG | + | chr4_4:44223886-44223905 | Msa0682530:CDS | 30.0% | |
| AATGCAACTCTTAAAAACAG+GGG | + | chr4_4:44223888-44223907 | Msa0682530:CDS | 30.0% | |
| TCAAGCTATCTACAAATTGA+TGG | + | chr4_4:44224046-44224065 | Msa0682530:CDS | 30.0% | |
| ACTCACATCGAACATAATTA+AGG | + | chr4_4:44224385-44224404 | Msa0682530:intron | 30.0% | |
| CTCACATCGAACATAATTAA+GGG | + | chr4_4:44224386-44224405 | Msa0682530:intron | 30.0% | |
| !! | AGGGAATGAAAATTTTTGGA+AGG | + | chr4_4:44224405-44224424 | Msa0682530:intron | 30.0% |
| ! | GATCAACCAAAATTCTAAGA+TGG | + | chr4_4:44224672-44224691 | Msa0682530:intron | 30.0% |
| !!! | TTTTTAATTTAAGTGGGGGT+GGG | - | chr4_4:44224823-44224842 | None:intergenic | 30.0% |
| !!! | TTTTTTAATTTAAGTGGGGG+TGG | - | chr4_4:44224824-44224843 | None:intergenic | 30.0% |
| ! | AATCCAAGAAACGATTAGTT+TGG | + | chr4_4:44225311-44225330 | Msa0682530:intron | 30.0% |
| TTTCCAAACTAATCGTTTCT+TGG | - | chr4_4:44225317-44225336 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTTTTTGGTGGCTG+GGG | + | chr4_4:44225363-44225382 | Msa0682530:intron | 30.0% |
| GTATGGACATAATATATGCA+AGG | - | chr4_4:44225402-44225421 | None:intergenic | 30.0% | |
| !!! | TGGTGTTTTAGAATTTGGAT+TGG | - | chr4_4:44225477-44225496 | None:intergenic | 30.0% |
| !!! | CTGTATGGTGTTTTAGAATT+TGG | - | chr4_4:44225482-44225501 | None:intergenic | 30.0% |
| CTATAACTACCCAACTATAT+GGG | - | chr4_4:44225594-44225613 | None:intergenic | 30.0% | |
| ACTATAACTACCCAACTATA+TGG | - | chr4_4:44225595-44225614 | None:intergenic | 30.0% | |
| !! | ATTGGAGTATTGTACACAAT+TGG | + | chr4_4:44225703-44225722 | Msa0682530:CDS | 30.0% |
| TAAGTTACCAATGACAAGAA+TGG | - | chr4_4:44225739-44225758 | None:intergenic | 30.0% | |
| ! | AAGTAACATTTTCACTGCAT+GGG | - | chr4_4:44226006-44226025 | None:intergenic | 30.0% |
| TACTTGGACAGTAATTAAAG+AGG | + | chr4_4:44226021-44226040 | Msa0682530:CDS | 30.0% | |
| TAAATGTGGCCAATTAAACT+AGG | - | chr4_4:44226083-44226102 | None:intergenic | 30.0% | |
| AAGTTAAGGTATATTGTGGT+TGG | - | chr4_4:44226464-44226483 | None:intergenic | 30.0% | |
| TGCAAAGTTAAGGTATATTG+TGG | - | chr4_4:44226468-44226487 | None:intergenic | 30.0% | |
| ACAATATACCTTAACTTTGC+AGG | + | chr4_4:44226467-44226486 | Msa0682530:intron | 30.0% | |
| ! | GGTTTTCTTATCATACTCAT+GGG | - | chr4_4:44226566-44226585 | None:intergenic | 30.0% |
| ! | AGGTTTTCTTATCATACTCA+TGG | - | chr4_4:44226567-44226586 | None:intergenic | 30.0% |
| TATAGACTATGATGAAGACT+AGG | - | chr4_4:44226587-44226606 | None:intergenic | 30.0% | |
| ! | ATTTTACAGTGCATAGAACA+TGG | - | chr4_4:44226691-44226710 | None:intergenic | 30.0% |
| CAAATTCTTGAGACATTGCT+GGG | - | chr4_4:44223489-44223508 | None:intergenic | 35.0% | |
| TTGCACAAAAACCATTCGTT+GGG | - | chr4_4:44223777-44223796 | None:intergenic | 35.0% | |
| TTTGCACAAAAACCATTCGT+TGG | - | chr4_4:44223778-44223797 | None:intergenic | 35.0% | |
| CTCTGATCACTCAAATCAAT+TGG | - | chr4_4:44223819-44223838 | None:intergenic | 35.0% | |
| GGATTGTAATTGATCTGAAG+TGG | - | chr4_4:44223864-44223883 | None:intergenic | 35.0% | |
| ATGAACTTCTACAGTTCCAT+TGG | + | chr4_4:44224077-44224096 | Msa0682530:CDS | 35.0% | |
| TATGTACCTTACACCATTGA+TGG | - | chr4_4:44224122-44224141 | None:intergenic | 35.0% | |
| GGCTTCATGACTTTCTTATA+AGG | + | chr4_4:44224248-44224267 | Msa0682530:intron | 35.0% | |
| GTTATGGATTTAATTCACCG+TGG | - | chr4_4:44224457-44224476 | None:intergenic | 35.0% | |
| !! | TATACTCTAGTTCTACTCTC+TGG | + | chr4_4:44224887-44224906 | Msa0682530:intron | 35.0% |
| ACATAATATATGCAAGGTCC+GGG | - | chr4_4:44225396-44225415 | None:intergenic | 35.0% | |
| GACATAATATATGCAAGGTC+CGG | - | chr4_4:44225397-44225416 | None:intergenic | 35.0% | |
| TATGTGCTTGTGAGCTTAAT+TGG | - | chr4_4:44225424-44225443 | None:intergenic | 35.0% | |
| TATTGGATCACCCATATAGT+TGG | + | chr4_4:44225581-44225600 | Msa0682530:intron | 35.0% | |
| ATTGGATCACCCATATAGTT+GGG | + | chr4_4:44225582-44225601 | Msa0682530:intron | 35.0% | |
| ! | GTTCGATCTAGAGTTACATT+TGG | + | chr4_4:44225648-44225667 | Msa0682530:CDS | 35.0% |
| !! | ATCACTGCTGTTTCATTCAA+TGG | - | chr4_4:44225685-44225704 | None:intergenic | 35.0% |
| TTGAATGAAACAGCAGTGAT+TGG | + | chr4_4:44225685-44225704 | Msa0682530:CDS | 35.0% | |
| AAACTTGTACTAGATCACAC+TGG | - | chr4_4:44225776-44225795 | None:intergenic | 35.0% | |
| CATATAGTTGGAAGATGACT+TGG | + | chr4_4:44225865-44225884 | Msa0682530:intron | 35.0% | |
| GCAATTTCTAATAACACTGC+CGG | + | chr4_4:44225890-44225909 | Msa0682530:CDS | 35.0% | |
| CAATTTCTAATAACACTGCC+GGG | + | chr4_4:44225891-44225910 | Msa0682530:CDS | 35.0% | |
| AATTTCTAATAACACTGCCG+GGG | + | chr4_4:44225892-44225911 | Msa0682530:CDS | 35.0% | |
| ! | AGTAACATTTTCACTGCATG+GGG | - | chr4_4:44226005-44226024 | None:intergenic | 35.0% |
| ! | CAAGTAACATTTTCACTGCA+TGG | - | chr4_4:44226007-44226026 | None:intergenic | 35.0% |
| CATGCAGTGAAAATGTTACT+TGG | + | chr4_4:44226005-44226024 | Msa0682530:CDS | 35.0% | |
| CTCCACTTACCTAGTTTAAT+TGG | + | chr4_4:44226071-44226090 | Msa0682530:intron | 35.0% | |
| TGGGAAAGATAGCTAGTAAA+AGG | - | chr4_4:44226122-44226141 | None:intergenic | 35.0% | |
| TAAGGTATATTGTGGTTGGT+TGG | - | chr4_4:44226460-44226479 | None:intergenic | 35.0% | |
| TTCATAGTCCTGCAAAGTTA+AGG | - | chr4_4:44226478-44226497 | None:intergenic | 35.0% | |
| AATGGCAAAGCTTACTTCAC+TGG | + | chr4_4:44223417-44223436 | Msa0682530:exon | 40.0% | |
| CCAAATTCTTGAGACATTGC+TGG | - | chr4_4:44223490-44223509 | None:intergenic | 40.0% | |
| CCAGCAATGTCTCAAGAATT+TGG | + | chr4_4:44223487-44223506 | Msa0682530:CDS | 40.0% | |
| GGTTTAATGTGTCCCCAATT+CGG | - | chr4_4:44223756-44223775 | None:intergenic | 40.0% | |
| GACACATTAAACCCAACGAA+TGG | + | chr4_4:44223763-44223782 | Msa0682530:CDS | 40.0% | |
| ! | GATCTGAAGTGGTCCTAAAT+TGG | - | chr4_4:44223853-44223872 | None:intergenic | 40.0% |
| AACACACCATCAATGGTGTA+AGG | + | chr4_4:44224113-44224132 | Msa0682530:CDS | 40.0% | |
| TAGTTCTCCCCAAAGTTTGA+GGG | + | chr4_4:44224709-44224728 | Msa0682530:intron | 40.0% | |
| !!! | TTTTTGAGGCCCATCGTTTT+TGG | - | chr4_4:44224788-44224807 | None:intergenic | 40.0% |
| TATTTCATAGGAACGACCCT+GGG | + | chr4_4:44225229-44225248 | Msa0682530:intron | 40.0% | |
| CATAATATATGCAAGGTCCG+GGG | - | chr4_4:44225395-44225414 | None:intergenic | 40.0% | |
| GCTTGTGAGCTTAATTGGTA+TGG | - | chr4_4:44225419-44225438 | None:intergenic | 40.0% | |
| GCTCACAAGCACATACAAAT+TGG | + | chr4_4:44225429-44225448 | Msa0682530:intron | 40.0% | |
| ACCAATGACAAGAATGGATC+TGG | - | chr4_4:44225733-44225752 | None:intergenic | 40.0% | |
| ! | ATAGTTGGAAGATGACTTGG+AGG | + | chr4_4:44225868-44225887 | Msa0682530:intron | 40.0% |
| ! | GTAACATTTTCACTGCATGG+GGG | - | chr4_4:44226004-44226023 | None:intergenic | 40.0% |
| GGCCAATTAAACTAGGTAAG+TGG | - | chr4_4:44226076-44226095 | None:intergenic | 40.0% | |
| TGCACTAAGCGGTTGTTTAA+TGG | - | chr4_4:44226522-44226541 | None:intergenic | 40.0% | |
| TTAGTGCAGCTGAACTGTTA+TGG | + | chr4_4:44226534-44226553 | Msa0682530:CDS | 40.0% | |
| !! | GAAGTGTCACTCTAGAATTC+AGG | + | chr4_4:44226651-44226670 | Msa0682530:three_prime_UTR | 40.0% |
| !! | AGTGGGGTGTTGTACTGAAA+AGG | - | chr4_4:44223350-44223369 | None:intergenic | 45.0% |
| CTGGGCATGATGAAAGCAAA+AGG | - | chr4_4:44223471-44223490 | None:intergenic | 45.0% | |
| TTAATGTGTCCCCAATTCGG+TGG | - | chr4_4:44223753-44223772 | None:intergenic | 45.0% | |
| AAACAGGGGTCATGATGTCA+AGG | + | chr4_4:44223902-44223921 | Msa0682530:CDS | 45.0% | |
| GTTCAGATGGAGTATGCCAA+TGG | - | chr4_4:44224096-44224115 | None:intergenic | 45.0% | |
| !! | CCATTGATGGTGTGTTCAGA+TGG | - | chr4_4:44224109-44224128 | None:intergenic | 45.0% |
| CCATCTGAACACACCATCAA+TGG | + | chr4_4:44224106-44224125 | Msa0682530:CDS | 45.0% | |
| ! | CTAGTTCTCCCCAAAGTTTG+AGG | + | chr4_4:44224708-44224727 | Msa0682530:intron | 45.0% |
| TGTACACGCCCTCAAACTTT+GGG | - | chr4_4:44224720-44224739 | None:intergenic | 45.0% | |
| ! | AAAGTTTGAGGGCGTGTACA+GGG | + | chr4_4:44224720-44224739 | Msa0682530:intron | 45.0% |
| AACTGAGCCTCCAAAAACGA+TGG | + | chr4_4:44224775-44224794 | Msa0682530:intron | 45.0% | |
| ACTGAGCCTCCAAAAACGAT+GGG | + | chr4_4:44224776-44224795 | Msa0682530:intron | 45.0% | |
| GAACGAGCCTCCTATTTCAT+AGG | + | chr4_4:44225217-44225236 | Msa0682530:intron | 45.0% | |
| GGTCGTTCCTATGAAATAGG+AGG | - | chr4_4:44225227-44225246 | None:intergenic | 45.0% | |
| CAGGGTCGTTCCTATGAAAT+AGG | - | chr4_4:44225230-44225249 | None:intergenic | 45.0% | |
| CTATTTCATAGGAACGACCC+TGG | + | chr4_4:44225228-44225247 | Msa0682530:intron | 45.0% | |
| AGACTTTCAATACACGCCCA+GGG | - | chr4_4:44225248-44225267 | None:intergenic | 45.0% | |
| AAGACTTTCAATACACGCCC+AGG | - | chr4_4:44225249-44225268 | None:intergenic | 45.0% | |
| GCCAGATCCATTCTTGTCAT+TGG | + | chr4_4:44225729-44225748 | Msa0682530:CDS | 45.0% | |
| GAACAGCAGCTTGAAGCAAT+TGG | - | chr4_4:44226201-44226220 | None:intergenic | 45.0% | |
| CGGTTGTTTAATGGCTGCAA+TGG | - | chr4_4:44226513-44226532 | None:intergenic | 45.0% | |
| AACAGTTCAGCTGCACTAAG+CGG | - | chr4_4:44226533-44226552 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTTATTCATATTTA+GGG | - | chr4_4:44223557-44223576 | None:intergenic | 5.0% |
| !!! | ATTTTTTTTTATTCATATTT+AGG | - | chr4_4:44223558-44223577 | None:intergenic | 5.0% |
| !!! | ATTTGTTATTTATTTTTTTA+GGG | - | chr4_4:44224535-44224554 | None:intergenic | 5.0% |
| !!! | TATTTGTTATTTATTTTTTT+AGG | - | chr4_4:44224536-44224555 | None:intergenic | 5.0% |
| TATGATGAAGGGAGTCCGCT+AGG | + | chr4_4:44223726-44223745 | Msa0682530:CDS | 50.0% | |
| GTACACGCCCTCAAACTTTG+GGG | - | chr4_4:44224719-44224738 | None:intergenic | 50.0% | |
| CTGTACACGCCCTCAAACTT+TGG | - | chr4_4:44224721-44224740 | None:intergenic | 50.0% | |
| ! | CAAAGTTTGAGGGCGTGTAC+AGG | + | chr4_4:44224719-44224738 | Msa0682530:intron | 50.0% |
| !! | TTGAGGCCCATCGTTTTTGG+AGG | - | chr4_4:44224785-44224804 | None:intergenic | 50.0% |
| TTTCCCCTTTCCTACGACGT+AGG | + | chr4_4:44225030-44225049 | Msa0682530:intron | 50.0% | |
| ACTCCTACGTCGTAGGAAAG+GGG | - | chr4_4:44225036-44225055 | None:intergenic | 50.0% | |
| CACTCCTACGTCGTAGGAAA+GGG | - | chr4_4:44225037-44225056 | None:intergenic | 50.0% | |
| TCACTCCTACGTCGTAGGAA+AGG | - | chr4_4:44225038-44225057 | None:intergenic | 50.0% | |
| GAATGTCACTCCTACGTCGT+AGG | - | chr4_4:44225043-44225062 | None:intergenic | 50.0% | |
| CAGCTGAACTGTTATGGAGC+TGG | + | chr4_4:44226540-44226559 | Msa0682530:CDS | 50.0% | |
| TCCGCTAGGACCACCGAATT+GGG | + | chr4_4:44223740-44223759 | Msa0682530:CDS | 55.0% | |
| AGAACCTCTTGCACTCCCCA+GGG | - | chr4_4:44224751-44224770 | None:intergenic | 55.0% | |
| TAGAACCTCTTGCACTCCCC+AGG | - | chr4_4:44224752-44224771 | None:intergenic | 55.0% | |
| GTCCGCTAGGACCACCGAAT+TGG | + | chr4_4:44223739-44223758 | Msa0682530:CDS | 60.0% | |
| ! | CCCCAATTCGGTGGTCCTAG+CGG | - | chr4_4:44223744-44223763 | None:intergenic | 60.0% |
| CCGCTAGGACCACCGAATTG+GGG | + | chr4_4:44223741-44223760 | Msa0682530:CDS | 60.0% | |
| ! | TTTGAGGGCGTGTACAGGGC+CGG | + | chr4_4:44224724-44224743 | Msa0682530:intron | 60.0% |
| ACCCACTGCGCTTTCTTCCC+CGG | - | chr4_4:44225912-44225931 | None:intergenic | 60.0% | |
| CTCTTGCACTCCCCAGGGTC+CGG | - | chr4_4:44224746-44224765 | None:intergenic | 65.0% | |
| ! | TGCCGGGGAAGAAAGCGCAG+TGG | + | chr4_4:44225907-44225926 | Msa0682530:CDS | 65.0% |
| ! | GCCGGGGAAGAAAGCGCAGT+GGG | + | chr4_4:44225908-44225927 | Msa0682530:CDS | 65.0% |
| CGTGTACAGGGCCGGACCCT+GGG | + | chr4_4:44224732-44224751 | Msa0682530:intron | 70.0% | |
| GTGTACAGGGCCGGACCCTG+GGG | + | chr4_4:44224733-44224752 | Msa0682530:intron | 70.0% | |
| ! | CGGACCCTGGGGAGTGCAAG+AGG | + | chr4_4:44224744-44224763 | Msa0682530:intron | 70.0% |
| GGTGGCTGGGGTTCGAACCC+CGG | + | chr4_4:44225375-44225394 | Msa0682530:intron | 70.0% | |
| GCGTGTACAGGGCCGGACCC+TGG | + | chr4_4:44224731-44224750 | Msa0682530:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 44223345 | 44226741 | 44223345 | ID=Msa0682530;Name=Msa0682530 |
| chr4_4 | mRNA | 44223345 | 44226741 | 44223345 | ID=Msa0682530-mRNA-1;Parent=Msa0682530;Name=Msa0682530-mRNA-1;_AED=0.08;_eAED=0.08;_QI=73|1|1|1|1|1|7|172|274 |
| chr4_4 | exon | 44223345 | 44223508 | 44223345 | ID=Msa0682530-mRNA-1:exon:10705;Parent=Msa0682530-mRNA-1 |
| chr4_4 | exon | 44223706 | 44223923 | 44223706 | ID=Msa0682530-mRNA-1:exon:10706;Parent=Msa0682530-mRNA-1 |
| chr4_4 | exon | 44224028 | 44224134 | 44224028 | ID=Msa0682530-mRNA-1:exon:10707;Parent=Msa0682530-mRNA-1 |
| chr4_4 | exon | 44225648 | 44225750 | 44225648 | ID=Msa0682530-mRNA-1:exon:10708;Parent=Msa0682530-mRNA-1 |
| chr4_4 | exon | 44225872 | 44226042 | 44225872 | ID=Msa0682530-mRNA-1:exon:10709;Parent=Msa0682530-mRNA-1 |
| chr4_4 | exon | 44226172 | 44226225 | 44226172 | ID=Msa0682530-mRNA-1:exon:10710;Parent=Msa0682530-mRNA-1 |
| chr4_4 | exon | 44226489 | 44226741 | 44226489 | ID=Msa0682530-mRNA-1:exon:10711;Parent=Msa0682530-mRNA-1 |
| chr4_4 | five_prime_UTR | 44223345 | 44223417 | 44223345 | ID=Msa0682530-mRNA-1:five_prime_utr;Parent=Msa0682530-mRNA-1 |
| chr4_4 | CDS | 44223418 | 44223508 | 44223418 | ID=Msa0682530-mRNA-1:cds;Parent=Msa0682530-mRNA-1 |
| chr4_4 | CDS | 44223706 | 44223923 | 44223706 | ID=Msa0682530-mRNA-1:cds;Parent=Msa0682530-mRNA-1 |
| chr4_4 | CDS | 44224028 | 44224134 | 44224028 | ID=Msa0682530-mRNA-1:cds;Parent=Msa0682530-mRNA-1 |
| chr4_4 | CDS | 44225648 | 44225750 | 44225648 | ID=Msa0682530-mRNA-1:cds;Parent=Msa0682530-mRNA-1 |
| chr4_4 | CDS | 44225872 | 44226042 | 44225872 | ID=Msa0682530-mRNA-1:cds;Parent=Msa0682530-mRNA-1 |
| chr4_4 | CDS | 44226172 | 44226225 | 44226172 | ID=Msa0682530-mRNA-1:cds;Parent=Msa0682530-mRNA-1 |
| chr4_4 | CDS | 44226489 | 44226569 | 44226489 | ID=Msa0682530-mRNA-1:cds;Parent=Msa0682530-mRNA-1 |
| chr4_4 | three_prime_UTR | 44226570 | 44226741 | 44226570 | ID=Msa0682530-mRNA-1:three_prime_utr;Parent=Msa0682530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
