AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1204880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1204880 MtrunA17_Chr4g0053841 97.819 596 12 1 1 596 1 595 0.0 1201
Msa1204880 MtrunA17_Chr5g0401451 70.328 610 160 10 1 596 28 630 0.0 855
Msa1204880 MtrunA17_Chr4g0010091 41.065 582 311 10 2 571 24 585 1.53e-152 452
Msa1204880 MtrunA17_Chr7g0268781 39.269 629 325 17 1 596 25 629 3.22e-138 416
Msa1204880 MtrunA17_Chr7g0245201 41.115 574 300 13 12 571 60 609 2.02e-137 414
Msa1204880 MtrunA17_Chr1g0195911 39.103 624 325 16 1 596 25 621 1.16e-136 411
Msa1204880 MtrunA17_Chr3g0108331 39.652 575 293 8 1 568 12 539 3.42e-135 406
Msa1204880 MtrunA17_Chr5g0432861 37.662 616 315 11 1 596 13 579 4.42e-134 403
Msa1204880 MtrunA17_Chr4g0050021 36.632 576 312 8 2 526 33 606 2.46e-119 368
Msa1204880 MtrunA17_Chr2g0279481 38.826 528 251 8 1 466 32 549 8.09e-117 362
Msa1204880 MtrunA17_Chr2g0303541 33.333 615 374 10 2 584 15 625 1.22e-113 353
Msa1204880 MtrunA17_Chr8g0374011 35.017 594 318 14 7 535 14 604 1.83e-105 332
Msa1204880 MtrunA17_Chr8g0382231 36.492 496 246 8 13 470 52 516 2.62e-104 328
Msa1204880 MtrunA17_Chr2g0285511 35.772 492 284 9 7 472 20 505 1.33e-103 325
Msa1204880 MtrunA17_Chr2g0320691 33.577 548 337 10 6 527 16 562 2.37e-100 318
Msa1204880 MtrunA17_Chr5g0401341 36.887 469 274 7 10 465 24 483 3.78e-97 309
Msa1204880 MtrunA17_Chr1g0207461 36.049 491 283 9 10 485 25 499 9.39e-94 300
Msa1204880 MtrunA17_Chr1g0181181 33.947 489 274 8 7 470 20 484 1.02e-92 296
Msa1204880 MtrunA17_Chr1g0150191 37.155 471 271 11 10 463 24 486 1.58e-92 297
Msa1204880 MtrunA17_Chr1g0199631 35.141 461 277 8 31 472 8 465 9.12e-91 291
Msa1204880 MtrunA17_Chr4g0076521 35.931 462 281 6 10 465 23 475 2.86e-90 291
Msa1204880 MtrunA17_Chr5g0412591 34.851 505 242 10 10 465 23 489 1.20e-82 271
Msa1204880 MtrunA17_Chr1g0206621 89.362 141 15 0 20 160 75 215 7.40e-81 254
Msa1204880 MtrunA17_Chr8g0367891 33.951 486 255 9 16 465 29 484 2.91e-78 259
Msa1204880 MtrunA17_Chr2g0290741 34.061 458 281 9 12 465 25 465 8.43e-78 257
Msa1204880 MtrunA17_Chr1g0191711 29.346 535 326 10 2 524 47 541 1.74e-77 255
Msa1204880 MtrunA17_Chr4g0003891 37.574 338 182 8 195 519 46 367 4.01e-55 193
Msa1204880 MtrunA17_Chr2g0332281 36.441 354 194 9 195 536 24 358 7.55e-55 192
Msa1204880 MtrunA17_Chr4g0023801 26.655 559 354 17 22 554 14 542 2.29e-46 171
Msa1204880 MtrunA17_Chr4g0037661 25.046 547 341 15 16 527 6 518 3.68e-39 151
Msa1204880 MtrunA17_Chr1g0163311 24.638 552 330 20 16 527 6 511 3.11e-33 133
Msa1204880 MtrunA17_Chr2g0280541 25.871 402 253 11 82 467 2 374 3.77e-25 108
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1204880 AT5G67385.1 62.932 607 199 10 1 596 13 604 0.0 714
Msa1204880 AT5G67385.4 62.369 574 190 10 34 596 1 559 0.0 659
Msa1204880 AT5G67385.5 62.369 574 190 10 34 596 1 559 0.0 659
Msa1204880 AT5G67385.2 62.369 574 190 10 34 596 1 559 0.0 659
Msa1204880 AT5G67385.3 62.369 574 190 10 34 596 1 559 0.0 659
Msa1204880 AT3G49970.1 51.646 577 207 15 25 596 6 515 0.0 529
Msa1204880 AT3G49970.2 51.646 577 207 15 25 596 6 515 0.0 529
Msa1204880 AT5G48800.1 42.586 580 289 9 5 571 34 582 3.83e-154 456
Msa1204880 AT2G30520.1 38.436 614 322 10 1 596 18 593 3.32e-136 410
Msa1204880 AT2G47860.1 41.848 552 280 12 1 527 26 561 5.47e-132 400
Msa1204880 AT1G03010.1 39.213 635 322 19 1 596 25 634 6.23e-131 397
Msa1204880 AT1G03010.2 39.048 630 321 18 6 596 2 607 1.34e-129 393
Msa1204880 AT1G03010.3 39.263 624 316 18 12 596 34 633 4.32e-129 393
Msa1204880 AT3G08570.1 37.691 589 301 12 12 571 33 584 1.45e-127 388
Msa1204880 AT2G47860.3 40.174 575 280 13 1 527 26 584 7.97e-127 388
Msa1204880 AT2G30520.2 37.629 582 307 10 33 596 2 545 2.67e-119 365
Msa1204880 AT2G30520.3 37.629 582 307 10 33 596 2 545 2.67e-119 365
Msa1204880 AT3G08660.1 37.083 569 305 12 12 571 33 557 9.27e-116 357
Msa1204880 AT1G30440.1 35.362 608 342 13 2 566 15 614 3.32e-112 350
Msa1204880 AT5G03250.1 36.264 546 308 11 7 518 20 559 3.27e-107 335
Msa1204880 AT3G08660.3 37.153 541 287 12 40 571 1 497 2.25e-106 330
Msa1204880 AT2G47860.4 42.956 433 213 9 1 414 26 443 7.69e-104 321
Msa1204880 AT5G66560.1 34.161 644 329 18 7 566 13 645 1.47e-102 325
Msa1204880 AT5G13600.1 35.766 548 311 13 7 524 20 556 2.52e-100 317
Msa1204880 AT2G47860.6 40.789 456 213 10 1 414 26 466 1.31e-98 308
Msa1204880 AT5G66560.3 34.345 626 316 18 25 566 2 616 1.92e-97 311
Msa1204880 AT5G66560.4 36.101 554 301 16 55 566 64 606 3.31e-95 305
Msa1204880 AT2G47860.5 39.294 453 240 9 100 527 1 443 1.67e-91 291
Msa1204880 AT2G47860.2 39.294 453 240 9 100 527 1 443 1.67e-91 291
Msa1204880 AT2G14820.2 35.502 538 306 13 12 521 26 550 1.61e-89 290
Msa1204880 AT2G14820.1 35.502 538 306 13 12 521 26 550 1.61e-89 290
Msa1204880 AT4G31820.1 33.725 510 295 11 12 506 26 507 1.99e-87 283
Msa1204880 AT5G67440.3 35.524 487 287 11 10 483 24 496 4.54e-86 279
Msa1204880 AT5G67440.1 35.524 487 287 11 10 483 24 496 4.54e-86 279
Msa1204880 AT1G67900.5 37.149 498 260 9 10 465 23 509 1.95e-85 279
Msa1204880 AT1G67900.1 37.149 498 260 9 10 465 23 509 1.95e-85 279
Msa1204880 AT1G67900.3 37.149 498 260 9 10 465 23 509 1.95e-85 279
Msa1204880 AT1G67900.6 37.149 498 260 9 10 465 23 509 1.95e-85 279
Msa1204880 AT1G67900.2 37.149 498 260 9 10 465 23 509 1.95e-85 279
Msa1204880 AT1G67900.4 37.149 498 260 9 10 465 23 509 1.95e-85 279
Msa1204880 AT3G50840.1 32.288 542 332 8 2 535 5 519 2.06e-85 277
Msa1204880 AT3G44820.1 29.982 567 350 11 2 527 12 572 4.25e-85 279
Msa1204880 AT5G10250.2 32.337 569 309 12 2 525 39 576 5.52e-84 275
Msa1204880 AT4G37590.1 33.272 541 295 13 10 526 24 522 2.24e-83 272
Msa1204880 AT5G10250.1 32.496 557 309 12 2 525 39 561 5.07e-82 269
Msa1204880 AT5G67440.2 35.532 470 276 11 27 483 4 459 2.72e-80 263
Msa1204880 AT3G08660.2 36.562 413 226 8 12 416 33 417 7.43e-79 256
Msa1204880 AT3G26490.1 31.992 497 285 10 10 465 23 507 2.77e-75 251
Msa1204880 AT3G26490.3 31.992 497 285 10 10 465 23 507 2.77e-75 251
Msa1204880 AT3G26490.4 31.992 497 285 10 10 465 23 507 2.77e-75 251
Msa1204880 AT2G23050.1 32.623 469 277 9 10 474 24 457 3.03e-75 248
Msa1204880 AT4G31820.2 32.573 482 282 11 40 506 1 454 5.04e-75 248
Msa1204880 AT3G50840.2 31.961 510 312 8 34 535 1 483 2.87e-74 247
Msa1204880 AT3G50840.3 31.961 510 312 8 34 535 1 483 2.87e-74 247
Msa1204880 AT5G66560.2 34.395 471 242 11 7 414 13 479 3.73e-74 245
Msa1204880 AT5G03250.2 34.437 453 257 11 100 518 1 447 7.13e-73 241
Msa1204880 AT5G47800.3 30.595 487 296 12 12 482 25 485 5.26e-71 239
Msa1204880 AT5G47800.1 30.595 487 296 12 12 482 25 485 5.26e-71 239
Msa1204880 AT5G47800.4 30.595 487 296 12 12 482 25 485 5.26e-71 239
Msa1204880 AT5G47800.2 30.595 487 296 12 12 482 138 598 8.34e-70 238
Msa1204880 AT3G26490.2 30.649 447 257 10 10 415 23 457 6.25e-59 205
Msa1204880 AT5G48130.1 27.680 513 304 13 7 493 33 504 1.83e-53 193
Msa1204880 AT5G64330.2 39.300 257 134 3 3 239 42 296 7.62e-52 189
Msa1204880 AT5G64330.2 37.011 281 142 5 256 503 372 650 1.06e-48 180
Msa1204880 AT5G64330.1 39.300 257 134 3 3 239 42 296 2.89e-51 189
Msa1204880 AT5G64330.1 34.539 304 166 4 256 526 372 675 4.01e-49 182
Msa1204880 AT1G52770.1 34.294 347 197 7 195 519 28 365 2.93e-51 183
Msa1204880 AT5G64330.3 37.011 281 142 5 256 503 313 591 4.48e-49 180
Msa1204880 AT5G64330.3 39.130 230 118 3 30 239 10 237 8.48e-43 162
Msa1204880 AT2G23050.2 30.053 376 227 8 100 474 1 341 4.97e-48 172
Msa1204880 AT3G15570.1 34.615 286 160 5 204 471 38 314 7.91e-45 165
Msa1204880 AT3G19850.1 27.586 464 280 11 33 463 23 463 6.75e-42 159
Msa1204880 AT1G50280.1 28.387 465 292 11 15 453 5 454 4.52e-40 154
Msa1204880 AT1G50280.2 29.117 419 260 9 57 453 18 421 4.67e-38 147
Msa1204880 AT3G22104.1 27.494 451 280 13 15 452 6 422 4.74e-38 147
Msa1204880 AT5G17580.2 26.496 468 305 11 15 470 22 462 4.43e-37 145
Msa1204880 AT5G17580.1 25.781 512 337 12 15 510 7 491 8.37e-37 144
Msa1204880 AT3G03510.1 27.451 408 241 10 69 470 8 366 3.02e-34 135
Msa1204880 AT3G22104.4 26.330 376 235 9 87 452 4 347 5.46e-26 111
Msa1204880 AT3G22104.2 26.330 376 235 9 87 452 4 347 5.46e-26 111
Msa1204880 AT3G22104.3 26.330 376 235 9 87 452 4 347 5.46e-26 111
Msa1204880 AT3G49900.2 30.864 162 100 4 3 159 55 209 1.00e-13 74.3
Msa1204880 AT3G49900.1 30.864 162 100 4 3 159 55 209 1.05e-13 74.3

Find 121 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGAATTTGAGCCACATTT+TGG 0.185225 8_1:-60741909 None:intergenic
GTCTAGTTGTATGCGATCTT+TGG 0.210752 8_1:-60742295 None:intergenic
CTTCCTTATGTGTCCACTTT+TGG 0.213031 8_1:-60739228 None:intergenic
AAAACATCTTGCACAAAATT+AGG 0.223686 8_1:-60742340 None:intergenic
GTTATATAGGTATATGTATA+TGG 0.247775 8_1:+60742518 Msa1204880:three_prime_UTR
CCATTCACTTGTTCTCTTCA+TGG 0.260781 8_1:-60738708 None:intergenic
AGATTATTCGGTCGGAAATT+TGG 0.273291 8_1:+60739430 Msa1204880:CDS
CTGTCAGCTTTCTTTCACTA+TGG 0.279955 8_1:+60740888 Msa1204880:CDS
TTTAACAAAGGACTATTAAT+AGG 0.297500 8_1:-60742153 None:intergenic
TGTGAATAAAGCATTATAAT+AGG 0.301041 8_1:-60739800 None:intergenic
CTACAATGTGACTGTGATTA+AGG 0.310866 8_1:-60738631 None:intergenic
AGCTACTGATAGAAATTTAT+CGG 0.321593 8_1:+60741189 Msa1204880:CDS
ATAAAACCCTTCGCGGTTGC+GGG 0.329085 8_1:+60738664 Msa1204880:five_prime_UTR
TTTGTAAGATATTTATTTGC+AGG 0.329856 8_1:+60742460 Msa1204880:three_prime_UTR
TTTGTGGAGCAGGAGATATT+TGG 0.340760 8_1:+60740767 Msa1204880:intron
TCGAGACAACTGTTGCTTGT+AGG 0.344850 8_1:+60740930 Msa1204880:CDS
TGTATTGTATTTGCTGCATT+TGG 0.355454 8_1:-60738607 None:intergenic
AGTGATGTCGCTATTCAAAT+TGG 0.360026 8_1:+60738868 Msa1204880:CDS
ACAGAAATCTTTGAGAGGTT+TGG 0.363083 8_1:+60739820 Msa1204880:CDS
CATTCTTCTCCCTTGGCATA+AGG 0.363104 8_1:-60740859 None:intergenic
ATTGAACTCATCGATGTTCC+TGG 0.366170 8_1:+60739293 Msa1204880:CDS
TGTTGCTTGTAGGTTTGATT+TGG 0.367239 8_1:+60740940 Msa1204880:CDS
TGAAATGACAGAAGATTATT+CGG 0.380236 8_1:+60739418 Msa1204880:CDS
CTTTCTTTCACTATGGCTTA+AGG 0.386758 8_1:+60740895 Msa1204880:CDS
TCTTGCACAAAATTAGGATA+TGG 0.387255 8_1:-60742334 None:intergenic
TCTCTTCATGGCACTAGAAA+TGG 0.387904 8_1:-60738696 None:intergenic
CATAAAACCCTTCGCGGTTG+CGG 0.389630 8_1:+60738663 Msa1204880:five_prime_UTR
GCGCCTCTCGTGATAGCTTC+TGG 0.389792 8_1:-60741852 None:intergenic
ACATCGATGAGTTCAATTAA+TGG 0.394415 8_1:-60739287 None:intergenic
AGAAGGATAGCCATGCAATT+AGG 0.395560 8_1:+60740965 Msa1204880:CDS
GTTGCACTCAAGAGCATGTC+CGG 0.398881 8_1:+60739482 Msa1204880:CDS
TCTAGTTGTATGCGATCTTT+GGG 0.404869 8_1:-60742294 None:intergenic
AAGAGTTCTAATTGCAATGA+TGG 0.405470 8_1:+60739748 Msa1204880:CDS
TTTCCATTAATTTCCAAAAG+TGG 0.409367 8_1:+60739215 Msa1204880:CDS
GCTTCCAAGGAGAGTCAGTT+TGG 0.413724 8_1:+60739599 Msa1204880:CDS
TAGCAGCAAAATTCTGTTAC+GGG 0.418556 8_1:+60739336 Msa1204880:CDS
GAGAGTCAGTTTGGTTCATC+TGG 0.422018 8_1:+60739608 Msa1204880:CDS
TTATCATGGGAAACGTTAAT+CGG 0.432582 8_1:+60742423 Msa1204880:three_prime_UTR
TTTCCAAAAGTGGACACATA+AGG 0.437270 8_1:+60739225 Msa1204880:CDS
ACCAATCAACAGCTGGCCTC+TGG 0.440922 8_1:-60739685 None:intergenic
TATCATGGGAAACGTTAATC+GGG 0.442735 8_1:+60742424 Msa1204880:three_prime_UTR
CGACATCACTTGGAATCTCC+TGG 0.445103 8_1:-60738855 None:intergenic
TTCCTCTTGTCAGGTGTTGA+AGG 0.446976 8_1:-60741994 None:intergenic
TCAGCAAGACAGATAAACTT+TGG 0.448229 8_1:-60741214 None:intergenic
ACCAGAGGCCAGCTGTTGAT+TGG 0.449238 8_1:+60739684 Msa1204880:CDS
CTGTCTGTGTCGCTTACAAA+TGG 0.449775 8_1:-60741802 None:intergenic
CACTACCTTGTGTAACGAAT+AGG 0.451183 8_1:-60738899 None:intergenic
GAGTATACATTCCTCTTGTC+AGG 0.452843 8_1:-60742003 None:intergenic
AGCCGTAGACATCTATCTTA+AGG 0.453245 8_1:+60741282 Msa1204880:CDS
AACTCAGTTTCCAGAAAACT+TGG 0.456593 8_1:+60742228 Msa1204880:CDS
GATATTGCATTCTTCTCCCT+TGG 0.461512 8_1:-60740866 None:intergenic
AGAGGCCAGCTGTTGATTGG+TGG 0.462714 8_1:+60739687 Msa1204880:CDS
CCCACGCTGCACAAAACAAC+AGG 0.463975 8_1:+60741878 Msa1204880:CDS
CCTCCTTCCCGCAACCGCGA+AGG 0.473737 8_1:-60738671 None:intergenic
AAATCAAGAACAACAGAAGA+TGG 0.483167 8_1:+60741250 Msa1204880:CDS
AAAGAAAGTTTGCAGCATGA+TGG 0.486600 8_1:+60741825 Msa1204880:CDS
ACTCTCCTTGGAAGCTATGT+AGG 0.486973 8_1:-60739591 None:intergenic
CTAGCAGCAAAATTCTGTTA+CGG 0.487215 8_1:+60739335 Msa1204880:CDS
ATATTATTCTTCTCCGCAAA+GGG 0.490419 8_1:+60741120 Msa1204880:CDS
TGAACCAAACTGACTCTCCT+TGG 0.490716 8_1:-60739603 None:intergenic
ACAGGATGAGCACGTTGAAA+AGG 0.498236 8_1:-60742261 None:intergenic
GATGTGTCGCCGCTAAATGA+AGG 0.498482 8_1:-60741016 None:intergenic
ATTTGAATAGCGACATCACT+TGG 0.501604 8_1:-60738865 None:intergenic
TGTTGTGCGTGATATTATCA+TGG 0.502970 8_1:+60742409 Msa1204880:three_prime_UTR
TTGGAAACCTCATTAGAAGC+TGG 0.504132 8_1:-60742039 None:intergenic
TTCTGTCATTTCAAGATACT+CGG 0.511486 8_1:-60739408 None:intergenic
GATATTTGGAAAGGGAAGGA+AGG 0.520414 8_1:+60740781 Msa1204880:CDS
AGTTTCTGATGTATGTAAGA+TGG 0.522762 8_1:-60739513 None:intergenic
GCTTTATCCAGCTTCTAATG+AGG 0.525232 8_1:+60742032 Msa1204880:CDS
GAGCAGGAGATATTTGGAAA+GGG 0.525905 8_1:+60740773 Msa1204880:intron
GAGGCCAGCTGTTGATTGGT+GGG 0.529140 8_1:+60739688 Msa1204880:CDS
TCACAGTCACATTGTAGTCT+CGG 0.533562 8_1:+60738637 Msa1204880:five_prime_UTR
ATGGATGGCACTGGCAGCAT+AGG 0.533950 8_1:+60741961 Msa1204880:CDS
CATCGCTATGCTTCGATGTG+TGG 0.533993 8_1:+60739385 Msa1204880:CDS
TTGTAAGATATTTATTTGCA+GGG 0.534022 8_1:+60742461 Msa1204880:three_prime_UTR
GGTTCATCTGGTAGAAGTGA+TGG 0.534039 8_1:+60739620 Msa1204880:CDS
AATATTATTCTTCTCCGCAA+AGG 0.534541 8_1:+60741119 Msa1204880:CDS
TCAGCCCACCAATCAACAGC+TGG 0.545487 8_1:-60739692 None:intergenic
AACCCTTCGCGGTTGCGGGA+AGG 0.547417 8_1:+60738668 Msa1204880:five_prime_UTR
TATTCGGTCGGAAATTTGGT+AGG 0.547468 8_1:+60739434 Msa1204880:CDS
CGCCTTCAACACCTGACAAG+AGG 0.552605 8_1:+60741992 Msa1204880:CDS
TTATCACAGGAATTACTCCC+AGG 0.555974 8_1:+60738837 Msa1204880:intron
TTGCACTCAAGAGCATGTCC+GGG 0.556327 8_1:+60739483 Msa1204880:CDS
GTAGGTTTGATTTGGAGAGA+AGG 0.556363 8_1:+60740948 Msa1204880:CDS
GATAGCCATGCAATTAGGAC+AGG 0.556430 8_1:+60740970 Msa1204880:CDS
AGGAGATATTTGGAAAGGGA+AGG 0.557338 8_1:+60740777 Msa1204880:intron
CGGATACATAAAACCCTTCG+CGG 0.558173 8_1:+60738657 Msa1204880:five_prime_UTR
CCTTCGCGGTTGCGGGAAGG+AGG 0.558602 8_1:+60738671 Msa1204880:five_prime_UTR
AATAGCCTACATAGCTTCCA+AGG 0.561754 8_1:+60739586 Msa1204880:CDS
CCATGAAGAGAACAAGTGAA+TGG 0.562517 8_1:+60738708 Msa1204880:exon
GCAATTAGGACAGGCTGTGT+TGG 0.562742 8_1:+60740979 Msa1204880:CDS
GCAACGTCTTCGCGACAACA+TGG 0.564907 8_1:+60741942 Msa1204880:CDS
TACTAGTGAGCCTTATGCCA+AGG 0.566316 8_1:+60740849 Msa1204880:CDS
CACAGCCTGTCCTAATTGCA+TGG 0.571835 8_1:-60740975 None:intergenic
CGCGACAACATGGATGGCAC+TGG 0.572937 8_1:+60741952 Msa1204880:CDS
CTAATTGCAATGATGGCTAG+AGG 0.579105 8_1:+60739755 Msa1204880:CDS
ATGACAGAAGATTATTCGGT+CGG 0.582614 8_1:+60739422 Msa1204880:CDS
GGAGCAGGAGATATTTGGAA+AGG 0.582870 8_1:+60740772 Msa1204880:intron
GACATCACTTGGAATCTCCT+GGG 0.585133 8_1:-60738854 None:intergenic
ATTAGAAGCTGGATAAAGCT+CGG 0.591749 8_1:-60742028 None:intergenic
CAGGCTTCCTGCCCAAAATG+TGG 0.597481 8_1:+60741897 Msa1204880:CDS
CTTCTGCTGCTTCTCACCAG+AGG 0.600201 8_1:+60739669 Msa1204880:CDS
TAATTGCAATGATGGCTAGA+GGG 0.601649 8_1:+60739756 Msa1204880:CDS
AAAGGAGGCTTATCAGCTGA+AGG 0.602067 8_1:-60742186 None:intergenic
CGTCTTCGCGACAACATGGA+TGG 0.604136 8_1:+60741946 Msa1204880:CDS
TACCTTAAGATAGATGTCTA+CGG 0.604585 8_1:-60741284 None:intergenic
ATGTAAGATGGATATTGCCC+CGG 0.605007 8_1:-60739501 None:intergenic
GGGAAACGTTAATCGGGGAA+AGG 0.607792 8_1:+60742430 Msa1204880:three_prime_UTR
TATTCACAGAAATCTTTGAG+AGG 0.616662 8_1:+60739815 Msa1204880:CDS
CACGTTGAAAAGGAGAAAGA+CGG 0.618103 8_1:-60742251 None:intergenic
GGTGATGATGCATTTAACAA+AGG 0.620143 8_1:-60742165 None:intergenic
AGCTTCCTATTCGTTACACA+AGG 0.621103 8_1:+60738894 Msa1204880:CDS
ACTAGTGAGCCTTATGCCAA+GGG 0.621863 8_1:+60740850 Msa1204880:CDS
TCTTTGGGACGTGATATGAC+AGG 0.621876 8_1:-60742279 None:intergenic
TATCAGTAGCTATTTCAGCA+AGG 0.623206 8_1:-60741177 None:intergenic
GTTGTGCGTGATATTATCAT+GGG 0.636259 8_1:+60742410 Msa1204880:three_prime_UTR
GAACTCATCGATGTTCCTGG+TGG 0.647010 8_1:+60739296 Msa1204880:CDS
TCAAATGCTTCTGATCCACC+AGG 0.656366 8_1:-60739311 None:intergenic
ATCATGGGAAACGTTAATCG+GGG 0.661921 8_1:+60742425 Msa1204880:three_prime_UTR
TGCACTCAAGAGCATGTCCG+GGG 0.663127 8_1:+60739484 Msa1204880:CDS
TTTCCAGAAGCTATCACGAG+AGG 0.681776 8_1:+60741849 Msa1204880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATATTTTATCTAAAATAG+TGG - chr8_1:60740696-60740715 None:intergenic 10.0%
!! TAAAATAAAAATAAAAGAGA+CGG + chr8_1:60742107-60742126 Msa1204880:CDS 10.0%
!!! GTTTTTTTATCAATAGTAAT+AGG + chr8_1:60739110-60739129 Msa1204880:intron 15.0%
!! TAATACCATCTTAAAAATTT+GGG + chr8_1:60740337-60740356 Msa1204880:intron 15.0%
!! TAATTGTAAGTTTATAAGAA+AGG - chr8_1:60740578-60740597 None:intergenic 15.0%
!! TTTCTTATAAACTTACAATT+AGG + chr8_1:60740577-60740596 Msa1204880:intron 15.0%
!! AATTCTAACTATATTAGTAT+TGG - chr8_1:60741764-60741783 None:intergenic 15.0%
!! ATATCAAACTTACTAATCAT+AGG + chr8_1:60738933-60738952 Msa1204880:intron 20.0%
!!! TGTGAATAAAGCATTATAAT+AGG - chr8_1:60739803-60739822 None:intergenic 20.0%
!! AAATTTCCTTCTTTAGTAAA+GGG - chr8_1:60739851-60739870 None:intergenic 20.0%
!! AAAATTTCCTTCTTTAGTAA+AGG - chr8_1:60739852-60739871 None:intergenic 20.0%
!!! TTTCATATCAGTTTTGTTTT+AGG + chr8_1:60739869-60739888 Msa1204880:intron 20.0%
!! CAATAAAAAAATTGTGGTAT+TGG + chr8_1:60739923-60739942 Msa1204880:intron 20.0%
!!! TGTGAATAAAGCATTATAAT+AGG - chr8_1:60739803-60739822 None:intergenic 20.0%
!! AAATTTCCTTCTTTAGTAAA+GGG - chr8_1:60739851-60739870 None:intergenic 20.0%
!! AAAATTTCCTTCTTTAGTAA+AGG - chr8_1:60739852-60739871 None:intergenic 20.0%
!!! TTTCATATCAGTTTTGTTTT+AGG + chr8_1:60739869-60739888 Msa1204880:intron 20.0%
!! CTAATACCATCTTAAAAATT+TGG + chr8_1:60740336-60740355 Msa1204880:intron 20.0%
!!! TGATACCATCTTAAAATTTT+AGG + chr8_1:60740503-60740522 Msa1204880:intron 20.0%
!!! TTCATTTTCTCTTCTTAATT+TGG - chr8_1:60742061-60742080 None:intergenic 20.0%
!! TTTAACAAAGGACTATTAAT+AGG - chr8_1:60742156-60742175 None:intergenic 20.0%
!!! CAAGATGTTTTTATCTTTTT+TGG + chr8_1:60742352-60742371 Msa1204880:three_prime_UTR 20.0%
!! TTTGTAAGATATTTATTTGC+AGG + chr8_1:60742460-60742479 Msa1204880:three_prime_UTR 20.0%
!! TTGTAAGATATTTATTTGCA+GGG + chr8_1:60742461-60742480 Msa1204880:three_prime_UTR 20.0%
!!! TTAGTGGTATTTTGTTATAT+AGG + chr8_1:60742505-60742524 Msa1204880:three_prime_UTR 20.0%
!! GTTATATAGGTATATGTATA+TGG + chr8_1:60742518-60742537 Msa1204880:three_prime_UTR 20.0%
! TGATAAGTAGTTCAATTCAA+AGG - chr8_1:60738823-60738842 None:intergenic 25.0%
! CTAATCATAGGATCATTAAA+TGG + chr8_1:60738945-60738964 Msa1204880:intron 25.0%
! TTTCCATTAATTTCCAAAAG+TGG + chr8_1:60739215-60739234 Msa1204880:CDS 25.0%
! TGAAATGACAGAAGATTATT+CGG + chr8_1:60739418-60739437 Msa1204880:CDS 25.0%
! TACGCACAATAAAAAAATTG+TGG + chr8_1:60739917-60739936 Msa1204880:intron 25.0%
!!! AACCTTATAAAGGTATTTTC+AGG + chr8_1:60740170-60740189 Msa1204880:intron 25.0%
!!! ACCATCTTAAAATTTTAGGT+TGG + chr8_1:60740507-60740526 Msa1204880:intron 25.0%
!!! CCATCTTAAAATTTTAGGTT+GGG + chr8_1:60740508-60740527 Msa1204880:intron 25.0%
! AGCTACTGATAGAAATTTAT+CGG + chr8_1:60741189-60741208 Msa1204880:CDS 25.0%
! ATTTACGACAACAATTTAGA+TGG + chr8_1:60741370-60741389 Msa1204880:intron 25.0%
! AGTTAGAATTCAAAATTCTC+AGG + chr8_1:60741774-60741793 Msa1204880:intron 25.0%
! AAAACATCTTGCACAAAATT+AGG - chr8_1:60742343-60742362 None:intergenic 25.0%
! TATATGTATTTTGTGCTGAG+TGG - chr8_1:60738571-60738590 None:intergenic 30.0%
! TGTATTGTATTTGCTGCATT+TGG - chr8_1:60738610-60738629 None:intergenic 30.0%
AAACACGTTGATATTAGCAT+CGG - chr8_1:60738774-60738793 None:intergenic 30.0%
! TGCTAATATCAACGTGTTTT+TGG + chr8_1:60738775-60738794 Msa1204880:intron 30.0%
TGAATTGAACTACTTATCAC+AGG + chr8_1:60738824-60738843 Msa1204880:intron 30.0%
GACTAATGAATTCTAGTACT+TGG + chr8_1:60738969-60738988 Msa1204880:intron 30.0%
!! TGTCCACTTTTGGAAATTAA+TGG - chr8_1:60739221-60739240 None:intergenic 30.0%
ACATCGATGAGTTCAATTAA+TGG - chr8_1:60739290-60739309 None:intergenic 30.0%
! TTCTGTCATTTCAAGATACT+CGG - chr8_1:60739411-60739430 None:intergenic 30.0%
AGTTTCTGATGTATGTAAGA+TGG - chr8_1:60739516-60739535 None:intergenic 30.0%
! AATTTTGCTTTCTCTGCAAT+TGG - chr8_1:60739545-60739564 None:intergenic 30.0%
! AAGAGTTCTAATTGCAATGA+TGG + chr8_1:60739748-60739767 Msa1204880:CDS 30.0%
GGGTTTAAAAATTGTGGTAT+TGG + chr8_1:60739776-60739795 Msa1204880:CDS 30.0%
TATTCACAGAAATCTTTGAG+AGG + chr8_1:60739815-60739834 Msa1204880:CDS 30.0%
TATTCACAGAAATCTTTGAG+AGG + chr8_1:60739815-60739834 Msa1204880:CDS 30.0%
CCTTTATAAGGTTAGATGTT+AGG - chr8_1:60740163-60740182 None:intergenic 30.0%
CCTAACATCTAACCTTATAA+AGG + chr8_1:60740160-60740179 Msa1204880:intron 30.0%
GACCTGAAAATACCTTTATA+AGG - chr8_1:60740175-60740194 None:intergenic 30.0%
ACCATCTTAAAAATTTGGGT+TGG + chr8_1:60740341-60740360 Msa1204880:intron 30.0%
! CCATCTTAAAAATTTGGGTT+GGG + chr8_1:60740342-60740361 Msa1204880:intron 30.0%
! GGACTGTCATCTTTAAATTT+TGG + chr8_1:60740402-60740421 Msa1204880:intron 30.0%
!! CCCAACCTAAAATTTTAAGA+TGG - chr8_1:60740511-60740530 None:intergenic 30.0%
! GATGAATCTTGACTATTTTG+TGG + chr8_1:60740751-60740770 Msa1204880:intron 30.0%
! CTTCTTTTTCCTTCATTTAG+CGG + chr8_1:60741007-60741026 Msa1204880:CDS 30.0%
! GATTTTCAACTTCAGATTCA+AGG - chr8_1:60741081-60741100 None:intergenic 30.0%
AATATTATTCTTCTCCGCAA+AGG + chr8_1:60741119-60741138 Msa1204880:CDS 30.0%
ATATTATTCTTCTCCGCAAA+GGG + chr8_1:60741120-60741139 Msa1204880:CDS 30.0%
! TCTGTTGTTCTTGATTTTTC+AGG - chr8_1:60741247-60741266 None:intergenic 30.0%
AAATCAAGAACAACAGAAGA+TGG + chr8_1:60741250-60741269 Msa1204880:CDS 30.0%
TACCTTAAGATAGATGTCTA+CGG - chr8_1:60741287-60741306 None:intergenic 30.0%
GTTAAAGCAGTTCAAATATG+TGG + chr8_1:60741392-60741411 Msa1204880:intron 30.0%
GACGATTATTGAGTATAACA+AGG + chr8_1:60741431-60741450 Msa1204880:intron 30.0%
TCGAAAATTGTGGTTAAGTA+TGG - chr8_1:60741472-60741491 None:intergenic 30.0%
CAATTTGTGTTCGAAAATTG+TGG - chr8_1:60741482-60741501 None:intergenic 30.0%
! CAATTTTCGAACACAAATTG+TGG + chr8_1:60741482-60741501 Msa1204880:intron 30.0%
GTAAGTTCAATTCTGTTATG+TGG - chr8_1:60741670-60741689 None:intergenic 30.0%
AGTACTATCCTTGAAATCAA+AGG + chr8_1:60741693-60741712 Msa1204880:intron 30.0%
! AGTTAAGTCCTTTGATTTCA+AGG - chr8_1:60741704-60741723 None:intergenic 30.0%
! GAGTTTAGGAATGATTTTCT+AGG - chr8_1:60742213-60742232 None:intergenic 30.0%
TCTTGCACAAAATTAGGATA+TGG - chr8_1:60742337-60742356 None:intergenic 30.0%
TTATCATGGGAAACGTTAAT+CGG + chr8_1:60742423-60742442 Msa1204880:three_prime_UTR 30.0%
!!! GTTTTGTTTTGTTCACTTAG+TGG + chr8_1:60742489-60742508 Msa1204880:three_prime_UTR 30.0%
! TGCTTTTATGAGAGTTTGAG+TGG - chr8_1:60738544-60738563 None:intergenic 35.0%
CTACAATGTGACTGTGATTA+AGG - chr8_1:60738634-60738653 None:intergenic 35.0%
ATTTGAATAGCGACATCACT+TGG - chr8_1:60738868-60738887 None:intergenic 35.0%
AGTGATGTCGCTATTCAAAT+TGG + chr8_1:60738868-60738887 Msa1204880:CDS 35.0%
! ATTTAGTTGACTTCGCGTAT+TGG + chr8_1:60739055-60739074 Msa1204880:intron 35.0%
TTTCCAAAAGTGGACACATA+AGG + chr8_1:60739225-60739244 Msa1204880:CDS 35.0%
CTAGCAGCAAAATTCTGTTA+CGG + chr8_1:60739335-60739354 Msa1204880:CDS 35.0%
TAGCAGCAAAATTCTGTTAC+GGG + chr8_1:60739336-60739355 Msa1204880:CDS 35.0%
ATGACAGAAGATTATTCGGT+CGG + chr8_1:60739422-60739441 Msa1204880:CDS 35.0%
AGATTATTCGGTCGGAAATT+TGG + chr8_1:60739430-60739449 Msa1204880:CDS 35.0%
TAATTGCAATGATGGCTAGA+GGG + chr8_1:60739756-60739775 Msa1204880:CDS 35.0%
GCTAGAGGGTTTAAAAATTG+TGG + chr8_1:60739770-60739789 Msa1204880:CDS 35.0%
! ACAGAAATCTTTGAGAGGTT+TGG + chr8_1:60739820-60739839 Msa1204880:CDS 35.0%
GTAAGTCCCTTTACTAAAGA+AGG + chr8_1:60739842-60739861 Msa1204880:intron 35.0%
! ACAGAAATCTTTGAGAGGTT+TGG + chr8_1:60739820-60739839 Msa1204880:CDS 35.0%
GTAAGTCCCTTTACTAAAGA+AGG + chr8_1:60739842-60739861 Msa1204880:intron 35.0%
!! CCCAACCCAAATTTTTAAGA+TGG - chr8_1:60740345-60740364 None:intergenic 35.0%
!! GGTTTTGTAAGGTTTGAGTT+AGG - chr8_1:60740368-60740387 None:intergenic 35.0%
CTTACAAAACCAGCTTGTAA+GGG + chr8_1:60740377-60740396 Msa1204880:intron 35.0%
!!! CTTACAAGCTGGTTTTGTAA+TGG - chr8_1:60740378-60740397 None:intergenic 35.0%
CATTACAAAACCAGCTTGTA+AGG + chr8_1:60740542-60740561 Msa1204880:intron 35.0%
GTCTCATATTCGATGAGATA+AGG - chr8_1:60740603-60740622 None:intergenic 35.0%
CTTTCTTTCACTATGGCTTA+AGG + chr8_1:60740895-60740914 Msa1204880:CDS 35.0%
! TGTTGCTTGTAGGTTTGATT+TGG + chr8_1:60740940-60740959 Msa1204880:CDS 35.0%
!!! TTTTCGGGTTGGAAAGTTAT+TGG + chr8_1:60741147-60741166 Msa1204880:CDS 35.0%
! TATCAGTAGCTATTTCAGCA+AGG - chr8_1:60741180-60741199 None:intergenic 35.0%
TCAGCAAGACAGATAAACTT+TGG - chr8_1:60741217-60741236 None:intergenic 35.0%
! TCGCATATAGATGGTTTTTC+AGG - chr8_1:60741527-60741546 None:intergenic 35.0%
AATCTGTGTTCGCATATAGA+TGG - chr8_1:60741536-60741555 None:intergenic 35.0%
ATATGCGAACACAGATTAGA+TGG + chr8_1:60741539-60741558 Msa1204880:intron 35.0%
! CGTCGTTAACTATGATTTTC+AGG - chr8_1:60741597-60741616 None:intergenic 35.0%
GTTAACGACGTTCAAAATCA+AGG + chr8_1:60741607-60741626 Msa1204880:intron 35.0%
AAAGAAAGTTTGCAGCATGA+TGG + chr8_1:60741825-60741844 Msa1204880:CDS 35.0%
! GAGAATTTGAGCCACATTTT+GGG - chr8_1:60741911-60741930 None:intergenic 35.0%
! AGAGAATTTGAGCCACATTT+TGG - chr8_1:60741912-60741931 None:intergenic 35.0%
ATTAGAAGCTGGATAAAGCT+CGG - chr8_1:60742031-60742050 None:intergenic 35.0%
! GGTGATGATGCATTTAACAA+AGG - chr8_1:60742168-60742187 None:intergenic 35.0%
! AATGATTTTCTAGGCAAAGG+AGG - chr8_1:60742204-60742223 None:intergenic 35.0%
! AGGAATGATTTTCTAGGCAA+AGG - chr8_1:60742207-60742226 None:intergenic 35.0%
!! GTTTTCTGGAAACTGAGTTT+AGG - chr8_1:60742227-60742246 None:intergenic 35.0%
AACTCAGTTTCCAGAAAACT+TGG + chr8_1:60742228-60742247 Msa1204880:CDS 35.0%
TCTAGTTGTATGCGATCTTT+GGG - chr8_1:60742297-60742316 None:intergenic 35.0%
TGTTGTGCGTGATATTATCA+TGG + chr8_1:60742409-60742428 Msa1204880:three_prime_UTR 35.0%
GTTGTGCGTGATATTATCAT+GGG + chr8_1:60742410-60742429 Msa1204880:three_prime_UTR 35.0%
TATCATGGGAAACGTTAATC+GGG + chr8_1:60742424-60742443 Msa1204880:three_prime_UTR 35.0%
TCACAGTCACATTGTAGTCT+CGG + chr8_1:60738637-60738656 Msa1204880:five_prime_UTR 40.0%
TCTCTTCATGGCACTAGAAA+TGG - chr8_1:60738699-60738718 None:intergenic 40.0%
CCATTCACTTGTTCTCTTCA+TGG - chr8_1:60738711-60738730 None:intergenic 40.0%
CCATGAAGAGAACAAGTGAA+TGG + chr8_1:60738708-60738727 Msa1204880:exon 40.0%
ACAAGTGAATGGTATGCTTC+TGG + chr8_1:60738719-60738738 Msa1204880:intron 40.0%
TTATCACAGGAATTACTCCC+AGG + chr8_1:60738837-60738856 Msa1204880:intron 40.0%
AGCTTCCTATTCGTTACACA+AGG + chr8_1:60738894-60738913 Msa1204880:CDS 40.0%
CACTACCTTGTGTAACGAAT+AGG - chr8_1:60738902-60738921 None:intergenic 40.0%
! CTTCCTTATGTGTCCACTTT+TGG - chr8_1:60739231-60739250 None:intergenic 40.0%
ATTGAACTCATCGATGTTCC+TGG + chr8_1:60739293-60739312 Msa1204880:CDS 40.0%
TATTCGGTCGGAAATTTGGT+AGG + chr8_1:60739434-60739453 Msa1204880:CDS 40.0%
ATGTAAGATGGATATTGCCC+CGG - chr8_1:60739504-60739523 None:intergenic 40.0%
AATAGCCTACATAGCTTCCA+AGG + chr8_1:60739586-60739605 Msa1204880:CDS 40.0%
CTAATTGCAATGATGGCTAG+AGG + chr8_1:60739755-60739774 Msa1204880:CDS 40.0%
CAATCCAAATGTCCACTATC+CGG - chr8_1:60740137-60740156 None:intergenic 40.0%
ATGTGTCAAGAGTCTCACAT+TGG - chr8_1:60740207-60740226 None:intergenic 40.0%
!!! CGCTCTAGATGTCTTGTTTT+GGG - chr8_1:60740254-60740273 None:intergenic 40.0%
!!! ACGCTCTAGATGTCTTGTTT+TGG - chr8_1:60740255-60740274 None:intergenic 40.0%
!!! CCTTACAAGCTGGTTTTGTA+AGG - chr8_1:60740379-60740398 None:intergenic 40.0%
CCTTACAAAACCAGCTTGTA+AGG + chr8_1:60740376-60740395 Msa1204880:intron 40.0%
!! GGTTTTGTAATGGTCGAGTT+AGG - chr8_1:60740534-60740553 None:intergenic 40.0%
! TCTTGACTATTTTGTGGAGC+AGG + chr8_1:60740757-60740776 Msa1204880:intron 40.0%
TTTGTGGAGCAGGAGATATT+TGG + chr8_1:60740767-60740786 Msa1204880:intron 40.0%
GAGCAGGAGATATTTGGAAA+GGG + chr8_1:60740773-60740792 Msa1204880:intron 40.0%
AGGAGATATTTGGAAAGGGA+AGG + chr8_1:60740777-60740796 Msa1204880:intron 40.0%
GATATTTGGAAAGGGAAGGA+AGG + chr8_1:60740781-60740800 Msa1204880:CDS 40.0%
! CTCTTTTCATGCTCTTCATG+TGG - chr8_1:60740815-60740834 None:intergenic 40.0%
GATATTGCATTCTTCTCCCT+TGG - chr8_1:60740869-60740888 None:intergenic 40.0%
CTGTCAGCTTTCTTTCACTA+TGG + chr8_1:60740888-60740907 Msa1204880:CDS 40.0%
!! GTAGGTTTGATTTGGAGAGA+AGG + chr8_1:60740948-60740967 Msa1204880:CDS 40.0%
AGAAGGATAGCCATGCAATT+AGG + chr8_1:60740965-60740984 Msa1204880:CDS 40.0%
! CTCCGCAAAGGGATATTTTT+CGG + chr8_1:60741131-60741150 Msa1204880:CDS 40.0%
! TCCGCAAAGGGATATTTTTC+GGG + chr8_1:60741132-60741151 Msa1204880:CDS 40.0%
ACCCGAAAAATATCCCTTTG+CGG - chr8_1:60741136-60741155 None:intergenic 40.0%
!!! CAAAGGGATATTTTTCGGGT+TGG + chr8_1:60741136-60741155 Msa1204880:CDS 40.0%
AGCCGTAGACATCTATCTTA+AGG + chr8_1:60741282-60741301 Msa1204880:CDS 40.0%
GAGTATACATTCCTCTTGTC+AGG - chr8_1:60742006-60742025 None:intergenic 40.0%
GCTTTATCCAGCTTCTAATG+AGG + chr8_1:60742032-60742051 Msa1204880:CDS 40.0%
TTGGAAACCTCATTAGAAGC+TGG - chr8_1:60742042-60742061 None:intergenic 40.0%
CACGTTGAAAAGGAGAAAGA+CGG - chr8_1:60742254-60742273 None:intergenic 40.0%
GTCTAGTTGTATGCGATCTT+TGG - chr8_1:60742298-60742317 None:intergenic 40.0%
ATCATGGGAAACGTTAATCG+GGG + chr8_1:60742425-60742444 Msa1204880:three_prime_UTR 40.0%
CGGATACATAAAACCCTTCG+CGG + chr8_1:60738657-60738676 Msa1204880:five_prime_UTR 45.0%
GACATCACTTGGAATCTCCT+GGG - chr8_1:60738857-60738876 None:intergenic 45.0%
TCAAATGCTTCTGATCCACC+AGG - chr8_1:60739314-60739333 None:intergenic 45.0%
ACTCTCCTTGGAAGCTATGT+AGG - chr8_1:60739594-60739613 None:intergenic 45.0%
! TGAACCAAACTGACTCTCCT+TGG - chr8_1:60739606-60739625 None:intergenic 45.0%
! GAGAGTCAGTTTGGTTCATC+TGG + chr8_1:60739608-60739627 Msa1204880:CDS 45.0%
GGTTCATCTGGTAGAAGTGA+TGG + chr8_1:60739620-60739639 Msa1204880:CDS 45.0%
CAATCCAGATGTCCAATCCT+GGG - chr8_1:60740102-60740121 None:intergenic 45.0%
ACAATCCAGATGTCCAATCC+TGG - chr8_1:60740103-60740122 None:intergenic 45.0%
!!! TCTTGTTTTGGGCGAGAAAG+GGG - chr8_1:60740243-60740262 None:intergenic 45.0%
!!! GTCTTGTTTTGGGCGAGAAA+GGG - chr8_1:60740244-60740263 None:intergenic 45.0%
!!! TGTCTTGTTTTGGGCGAGAA+AGG - chr8_1:60740245-60740264 None:intergenic 45.0%
! AAGACATCTAGAGCGTGACA+CGG + chr8_1:60740259-60740278 Msa1204880:intron 45.0%
AGAGCATATCCAAGATCCGT+TGG - chr8_1:60740318-60740337 None:intergenic 45.0%
TACTATGTCACACCGGTATC+GGG - chr8_1:60740452-60740471 None:intergenic 45.0%
CTACTATGTCACACCGGTAT+CGG - chr8_1:60740453-60740472 None:intergenic 45.0%
! CACTTGCTACTATGTCACAC+CGG - chr8_1:60740459-60740478 None:intergenic 45.0%
GAGCCTATCCAAGATCTGTT+GGG - chr8_1:60740483-60740502 None:intergenic 45.0%
AGAGCCTATCCAAGATCTGT+TGG - chr8_1:60740484-60740503 None:intergenic 45.0%
TTAGTCGTCACCTTACAAGC+TGG - chr8_1:60740555-60740574 None:intergenic 45.0%
GGAGCAGGAGATATTTGGAA+AGG + chr8_1:60740772-60740791 Msa1204880:intron 45.0%
! TACTAGTGAGCCTTATGCCA+AGG + chr8_1:60740849-60740868 Msa1204880:CDS 45.0%
! ACTAGTGAGCCTTATGCCAA+GGG + chr8_1:60740850-60740869 Msa1204880:CDS 45.0%
CATTCTTCTCCCTTGGCATA+AGG - chr8_1:60740862-60740881 None:intergenic 45.0%
! TCGAGACAACTGTTGCTTGT+AGG + chr8_1:60740930-60740949 Msa1204880:CDS 45.0%
GATAGCCATGCAATTAGGAC+AGG + chr8_1:60740970-60740989 Msa1204880:CDS 45.0%
!! CTGTCTGTGTCGCTTACAAA+TGG - chr8_1:60741805-60741824 None:intergenic 45.0%
TTTCCAGAAGCTATCACGAG+AGG + chr8_1:60741849-60741868 Msa1204880:CDS 45.0%
! ATTTGAGCCACATTTTGGGC+AGG - chr8_1:60741907-60741926 None:intergenic 45.0%
!! TTCCTCTTGTCAGGTGTTGA+AGG - chr8_1:60741997-60742016 None:intergenic 45.0%
AAAGGAGGCTTATCAGCTGA+AGG - chr8_1:60742189-60742208 None:intergenic 45.0%
! AGAAAGACGGCCAAGTTTTC+TGG - chr8_1:60742241-60742260 None:intergenic 45.0%
ACAGGATGAGCACGTTGAAA+AGG - chr8_1:60742264-60742283 None:intergenic 45.0%
!! TCTTTGGGACGTGATATGAC+AGG - chr8_1:60742282-60742301 None:intergenic 45.0%
CATAAAACCCTTCGCGGTTG+CGG + chr8_1:60738663-60738682 Msa1204880:five_prime_UTR 50.0%
ATAAAACCCTTCGCGGTTGC+GGG + chr8_1:60738664-60738683 Msa1204880:five_prime_UTR 50.0%
CGACATCACTTGGAATCTCC+TGG - chr8_1:60738858-60738877 None:intergenic 50.0%
GAACTCATCGATGTTCCTGG+TGG + chr8_1:60739296-60739315 Msa1204880:CDS 50.0%
CATCGCTATGCTTCGATGTG+TGG + chr8_1:60739385-60739404 Msa1204880:CDS 50.0%
! GTTGCACTCAAGAGCATGTC+CGG + chr8_1:60739482-60739501 Msa1204880:CDS 50.0%
! TTGCACTCAAGAGCATGTCC+GGG + chr8_1:60739483-60739502 Msa1204880:CDS 50.0%
GCTTCCAAGGAGAGTCAGTT+TGG + chr8_1:60739599-60739618 Msa1204880:CDS 50.0%
ATGTCCAATCCTGGGTGTGA+GGG - chr8_1:60740094-60740113 None:intergenic 50.0%
TGGATTGTGACCTGAGTAGC+CGG + chr8_1:60740115-60740134 Msa1204880:intron 50.0%
!! GTAGCCGGATAGTGGACATT+TGG + chr8_1:60740130-60740149 Msa1204880:intron 50.0%
! AGACATCTAGAGCGTGACAC+GGG + chr8_1:60740260-60740279 Msa1204880:intron 50.0%
CAAAACCAGCTTGTAAGGGC+AGG + chr8_1:60740381-60740400 Msa1204880:intron 50.0%
! CATCGAGAGTGTGACACTAG+TGG + chr8_1:60740426-60740445 Msa1204880:intron 50.0%
CGGTGTGACATAGTAGCAAG+TGG + chr8_1:60740457-60740476 Msa1204880:intron 50.0%
TGGCCCAACAGATCTTGGAT+AGG + chr8_1:60740477-60740496 Msa1204880:intron 50.0%
CACAGCCTGTCCTAATTGCA+TGG - chr8_1:60740978-60740997 None:intergenic 50.0%
GCAATTAGGACAGGCTGTGT+TGG + chr8_1:60740979-60740998 Msa1204880:CDS 50.0%
GATGTGTCGCCGCTAAATGA+AGG - chr8_1:60741019-60741038 None:intergenic 50.0%
!!! CCTGTTGTTTTGTGCAGCGT+GGG - chr8_1:60741881-60741900 None:intergenic 50.0%
GGGAAACGTTAATCGGGGAA+AGG + chr8_1:60742430-60742449 Msa1204880:three_prime_UTR 50.0%
! TGCACTCAAGAGCATGTCCG+GGG + chr8_1:60739484-60739503 Msa1204880:CDS 55.0%
! CTTCTGCTGCTTCTCACCAG+AGG + chr8_1:60739669-60739688 Msa1204880:CDS 55.0%
ACCAGAGGCCAGCTGTTGAT+TGG + chr8_1:60739684-60739703 Msa1204880:CDS 55.0%
! ACCAATCAACAGCTGGCCTC+TGG - chr8_1:60739688-60739707 None:intergenic 55.0%
! AGAGGCCAGCTGTTGATTGG+TGG + chr8_1:60739687-60739706 Msa1204880:CDS 55.0%
! GAGGCCAGCTGTTGATTGGT+GGG + chr8_1:60739688-60739707 Msa1204880:CDS 55.0%
TCAGCCCACCAATCAACAGC+TGG - chr8_1:60739695-60739714 None:intergenic 55.0%
TAACATACCCCCTCACACCC+AGG + chr8_1:60740082-60740101 Msa1204880:intron 55.0%
TGTCCAATCCTGGGTGTGAG+GGG - chr8_1:60740093-60740112 None:intergenic 55.0%
GATGTCCAATCCTGGGTGTG+AGG - chr8_1:60740095-60740114 None:intergenic 55.0%
CACACCCAGGATTGGACATC+TGG + chr8_1:60740095-60740114 Msa1204880:intron 55.0%
TGACCTGAGTAGCCGGATAG+TGG + chr8_1:60740122-60740141 Msa1204880:intron 55.0%
TGTCCACTATCCGGCTACTC+AGG - chr8_1:60740128-60740147 None:intergenic 55.0%
! TTTTGGGCGAGAAAGGGGTG+GGG - chr8_1:60740238-60740257 None:intergenic 55.0%
!! GTTTTGGGCGAGAAAGGGGT+GGG - chr8_1:60740239-60740258 None:intergenic 55.0%
!! TGTTTTGGGCGAGAAAGGGG+TGG - chr8_1:60740240-60740259 None:intergenic 55.0%
ACCTGGTAGCAAGTGGCCAA+CGG + chr8_1:60740299-60740318 Msa1204880:intron 55.0%
AGCAAGTGGCCAACGGATCT+TGG + chr8_1:60740306-60740325 Msa1204880:intron 55.0%
ACAGTCCTGCCCTTACAAGC+TGG - chr8_1:60740389-60740408 None:intergenic 55.0%
TGACACTAGTGGCCCGATAC+CGG + chr8_1:60740437-60740456 Msa1204880:intron 55.0%
GCAAGTGGCCCAACAGATCT+TGG + chr8_1:60740472-60740491 Msa1204880:intron 55.0%
CCCACGCTGCACAAAACAAC+AGG + chr8_1:60741878-60741897 Msa1204880:CDS 55.0%
!!! GCCTGTTGTTTTGTGCAGCG+TGG - chr8_1:60741882-60741901 None:intergenic 55.0%
CAGGCTTCCTGCCCAAAATG+TGG + chr8_1:60741897-60741916 Msa1204880:CDS 55.0%
GCAACGTCTTCGCGACAACA+TGG + chr8_1:60741942-60741961 Msa1204880:CDS 55.0%
CGTCTTCGCGACAACATGGA+TGG + chr8_1:60741946-60741965 Msa1204880:CDS 55.0%
!! ATGGATGGCACTGGCAGCAT+AGG + chr8_1:60741961-60741980 Msa1204880:CDS 55.0%
CGCCTTCAACACCTGACAAG+AGG + chr8_1:60741992-60742011 Msa1204880:CDS 55.0%
TACCCCCTCACACCCAGGAT+TGG + chr8_1:60740087-60740106 Msa1204880:intron 60.0%
GTCCAATCCTGGGTGTGAGG+GGG - chr8_1:60740092-60740111 None:intergenic 60.0%
! CATCTAGAGCGTGACACGGG+TGG + chr8_1:60740263-60740282 Msa1204880:intron 60.0%
! GCCACTTGCTACCAGGTCAC+GGG - chr8_1:60740296-60740315 None:intergenic 60.0%
! GGCCACTTGCTACCAGGTCA+CGG - chr8_1:60740297-60740316 None:intergenic 60.0%
! TCCGTTGGCCACTTGCTACC+AGG - chr8_1:60740303-60740322 None:intergenic 60.0%
GCGCCTCTCGTGATAGCTTC+TGG - chr8_1:60741855-60741874 None:intergenic 60.0%
CGCGACAACATGGATGGCAC+TGG + chr8_1:60741952-60741971 Msa1204880:CDS 60.0%
AACCCTTCGCGGTTGCGGGA+AGG + chr8_1:60738668-60738687 Msa1204880:five_prime_UTR 65.0%
CTCCTTCCCGCAACCGCGAA+GGG - chr8_1:60738673-60738692 None:intergenic 65.0%
GCCCGTGACCTGGTAGCAAG+TGG + chr8_1:60740292-60740311 Msa1204880:intron 65.0%
CCTCCTTCCCGCAACCGCGA+AGG - chr8_1:60738674-60738693 None:intergenic 70.0%
CCTTCGCGGTTGCGGGAAGG+AGG + chr8_1:60738671-60738690 Msa1204880:five_prime_UTR 70.0%
GTGGCTCGATGCCCGTGACC+TGG + chr8_1:60740282-60740301 Msa1204880:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 60738535 60742542 60738535 ID=Msa1204880;Name=Msa1204880
chr8_1 mRNA 60738535 60742542 60738535 ID=Msa1204880-mRNA-1;Parent=Msa1204880;Name=Msa1204880-mRNA-1;_AED=0.08;_eAED=0.08;_QI=175|1|1|1|1|1|5|198|596
chr8_1 exon 60738535 60738729 60738535 ID=Msa1204880-mRNA-1:exon:19700;Parent=Msa1204880-mRNA-1
chr8_1 exon 60738846 60738915 60738846 ID=Msa1204880-mRNA-1:exon:19701;Parent=Msa1204880-mRNA-1
chr8_1 exon 60739215 60739841 60739215 ID=Msa1204880-mRNA-1:exon:19702;Parent=Msa1204880-mRNA-1
chr8_1 exon 60740779 60741303 60740779 ID=Msa1204880-mRNA-1:exon:19703;Parent=Msa1204880-mRNA-1
chr8_1 exon 60741796 60742542 60741796 ID=Msa1204880-mRNA-1:exon:19704;Parent=Msa1204880-mRNA-1
chr8_1 five_prime_UTR 60738535 60738709 60738535 ID=Msa1204880-mRNA-1:five_prime_utr;Parent=Msa1204880-mRNA-1
chr8_1 CDS 60738710 60738729 60738710 ID=Msa1204880-mRNA-1:cds;Parent=Msa1204880-mRNA-1
chr8_1 CDS 60738846 60738915 60738846 ID=Msa1204880-mRNA-1:cds;Parent=Msa1204880-mRNA-1
chr8_1 CDS 60739215 60739841 60739215 ID=Msa1204880-mRNA-1:cds;Parent=Msa1204880-mRNA-1
chr8_1 CDS 60740779 60741303 60740779 ID=Msa1204880-mRNA-1:cds;Parent=Msa1204880-mRNA-1
chr8_1 CDS 60741796 60742344 60741796 ID=Msa1204880-mRNA-1:cds;Parent=Msa1204880-mRNA-1
chr8_1 three_prime_UTR 60742345 60742542 60742345 ID=Msa1204880-mRNA-1:three_prime_utr;Parent=Msa1204880-mRNA-1
Gene Sequence

>Msa1204880

ATGAAGAGAACAAGTGAATGGAATTACTCCCAGGAGATTCCAAGTGATGTCGCTATTCAAATTGGTGAAGCTTCCTATTCGTTACACAAGTTTCCATTAATTTCCAAAAGTGGACACATAAGGAAGCTCATTTCAGAATCTAGTGATGCTGTTGCTGATGTTCCATTAATTGAACTCATCGATGTTCCTGGTGGATCAGAAGCATTTGAACTAGCAGCAAAATTCTGTTACGGGATAAACTTCGAAATAAGTGTCGAAAACATCGCTATGCTTCGATGTGTGGCCGAGTATCTTGAAATGACAGAAGATTATTCGGTCGGAAATTTGGTAGGAAGAACTGATTCTTACTTGAATGAAGTTGCACTCAAGAGCATGTCCGGGGCAATATCCATCTTACATACATCAGAAACTCTTCTTCCAATTGCAGAGAAAGCAAAATTAGTTAGCAGATGCATAGATGCAATAGCCTACATAGCTTCCAAGGAGAGTCAGTTTGGTTCATCTGGTAGAAGTGATGGTAGTAGCAATGAAAGAGTGATGAATTCTTCTGCTGCTTCTCACCAGAGGCCAGCTGTTGATTGGTGGGCTGAAGATCTAACTGTTCTTAGAATTGACTTTTTTCAAAGAGTTCTAATTGCAATGATGGCTAGAGGGTTTAAAAATTGTGGTATTGGTCCTATTATAATGCTTTATTCACAGAAATCTTTGAGAGGTTTGGAGATATTTGGAAAGGGAAGGAAGGATATAGAACCACATGAAGAGCATGAAAAGAGACTTATTTTAGAGATACTAGTGAGCCTTATGCCAAGGGAGAAGAATGCAATATCTGTCAGCTTTCTTTCACTATGGCTTAAGGCAGCAATATATCTCGAGACAACTGTTGCTTGTAGGTTTGATTTGGAGAGAAGGATAGCCATGCAATTAGGACAGGCTGTGTTGGATGATCTTCTTTTTCCTTCATTTAGCGGCGACACATCGTTTGATGTAGAAACAGTGCAAAGAATCATGATGAATTACCTTGAATCTGAAGTTGAAAATCATTACAATGCAGATGATGAATATTATTCTTCTCCGCAAAGGGATATTTTTCGGGTTGGAAAGTTATTGGAGAGTTACCTTGCTGAAATAGCTACTGATAGAAATTTATCGGTTCCAAAGTTTATCTGTCTTGCTGAATTAATGCCTGAAAAATCAAGAACAACAGAAGATGGAATGTATAGAGCCGTAGACATCTATCTTAAGGCACATCCATTTGTAAGCGACACAGACAGAAAGAAAGTTTGCAGCATGATGGATTTCCAGAAGCTATCACGAGAGGCGCGAACCCACGCTGCACAAAACAACAGGCTTCCTGCCCAAAATGTGGCTCAAATTCTCTATTATGAACAGCAACGTCTTCGCGACAACATGGATGGCACTGGCAGCATAGGTTCAGATTCGCCTTCAACACCTGACAAGAGGAATGTATACTCATCCGAGCTTTATCCAGCTTCTAATGAGGTTTCCAAATTAAGAAGAGAAAATGAAGAACTGAAATTAGAGATAGCGAAACTTAAAATAAAAATAAAAGAGACGGAAAAATGTACAGTACTTGAATCACCTATTAATAGTCCTTTGTTAAATGCATCATCACCTTCAGCTGATAAGCCTCCTTTGCCTAGAAAATCATTCCTAAACTCAGTTTCCAGAAAACTTGGCCGTCTTTCTCCTTTTCAACGTGCTCATCCTGTCATATCACGTCCCAAAGATCGCATACAACTAGACAAGATTCGACGCTACTCCATATCCTAA
Protein sequence

>Msa1204880

MKRTSEWNYSQEIPSDVAIQIGEASYSLHKFPLISKSGHIRKLISESSDAVADVPLIELIDVPGGSEAFELAAKFCYGINFEISVENIAMLRCVAEYLEMTEDYSVGNLVGRTDSYLNEVALKSMSGAISILHTSETLLPIAEKAKLVSRCIDAIAYIASKESQFGSSGRSDGSSNERVMNSSAASHQRPAVDWWAEDLTVLRIDFFQRVLIAMMARGFKNCGIGPIIMLYSQKSLRGLEIFGKGRKDIEPHEEHEKRLILEILVSLMPREKNAISVSFLSLWLKAAIYLETTVACRFDLERRIAMQLGQAVLDDLLFPSFSGDTSFDVETVQRIMMNYLESEVENHYNADDEYYSSPQRDIFRVGKLLESYLAEIATDRNLSVPKFICLAELMPEKSRTTEDGMYRAVDIYLKAHPFVSDTDRKKVCSMMDFQKLSREARTHAAQNNRLPAQNVAQILYYEQQRLRDNMDGTGSIGSDSPSTPDKRNVYSSELYPASNEVSKLRRENEELKLEIAKLKIKIKETEKCTVLESPINSPLLNASSPSADKPPLPRKSFLNSVSRKLGRLSPFQRAHPVISRPKDRIQLDKIRRYSIS*