AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1296800

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1296800 MtrunA17_Chr4g0053841 95.638 596 15 2 1 586 1 595 0.0 1163
Msa1296800 MtrunA17_Chr5g0401451 68.361 610 162 10 1 586 28 630 0.0 825
Msa1296800 MtrunA17_Chr4g0010091 39.863 582 308 11 2 561 24 585 3.34e-142 425
Msa1296800 MtrunA17_Chr7g0268781 39.144 631 313 19 1 586 25 629 2.63e-130 395
Msa1296800 MtrunA17_Chr1g0195911 38.462 624 319 17 1 586 25 621 1.32e-128 390
Msa1296800 MtrunA17_Chr3g0108331 38.284 606 305 12 1 586 12 568 1.54e-126 383
Msa1296800 MtrunA17_Chr5g0432861 36.851 616 310 12 1 586 13 579 3.02e-126 383
Msa1296800 MtrunA17_Chr7g0245201 39.547 574 299 14 12 561 60 609 8.36e-126 384
Msa1296800 MtrunA17_Chr4g0050021 34.760 584 311 11 2 517 33 614 3.48e-108 339
Msa1296800 MtrunA17_Chr2g0279481 37.121 528 250 10 1 456 32 549 8.73e-106 333
Msa1296800 MtrunA17_Chr2g0303541 33.109 595 343 13 2 556 15 594 1.42e-102 323
Msa1296800 MtrunA17_Chr8g0382231 35.282 496 242 9 13 460 52 516 1.64e-95 305
Msa1296800 MtrunA17_Chr8g0374011 37.030 505 262 12 7 457 14 516 2.94e-95 305
Msa1296800 MtrunA17_Chr2g0285511 34.756 492 279 10 7 462 20 505 3.23e-95 303
Msa1296800 MtrunA17_Chr2g0320691 32.117 548 335 11 6 517 16 562 1.15e-89 290
Msa1296800 MtrunA17_Chr5g0401341 35.394 469 271 9 10 455 24 483 2.96e-88 286
Msa1296800 MtrunA17_Chr1g0207461 35.031 491 278 11 10 475 25 499 2.95e-85 278
Msa1296800 MtrunA17_Chr4g0076521 35.714 462 272 8 10 455 23 475 7.42e-85 276
Msa1296800 MtrunA17_Chr1g0150191 35.669 471 268 13 10 453 24 486 1.34e-82 270
Msa1296800 MtrunA17_Chr1g0181181 32.311 489 272 9 7 460 20 484 1.19e-81 266
Msa1296800 MtrunA17_Chr1g0199631 33.623 461 274 9 31 462 8 465 3.65e-80 263
Msa1296800 MtrunA17_Chr5g0412591 34.545 495 247 11 10 455 23 489 3.93e-77 256
Msa1296800 MtrunA17_Chr2g0290741 33.188 458 275 10 12 455 25 465 4.45e-72 241
Msa1296800 MtrunA17_Chr1g0206621 81.560 141 16 1 20 150 75 215 1.14e-68 222
Msa1296800 MtrunA17_Chr8g0367891 32.371 485 254 11 16 455 29 484 4.01e-68 231
Msa1296800 MtrunA17_Chr1g0191711 28.083 527 318 11 2 508 47 532 4.75e-68 230
Msa1296800 MtrunA17_Chr2g0332281 36.723 354 193 9 185 526 24 358 1.65e-55 193
Msa1296800 MtrunA17_Chr4g0003891 37.574 338 182 8 185 509 46 367 3.59e-55 193
Msa1296800 MtrunA17_Chr4g0023801 26.742 531 324 16 22 517 14 514 9.12e-43 161
Msa1296800 MtrunA17_Chr4g0037661 23.519 540 350 14 15 517 5 518 3.30e-32 130
Msa1296800 MtrunA17_Chr1g0163311 23.551 552 326 22 16 517 6 511 3.55e-25 109
Msa1296800 MtrunA17_Chr2g0280541 26.852 324 206 8 136 457 80 374 3.61e-24 105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1296800 AT5G67385.1 61.285 607 199 11 1 586 13 604 0.0 686
Msa1296800 AT5G67385.4 60.627 574 190 11 34 586 1 559 0.0 632
Msa1296800 AT5G67385.5 60.627 574 190 11 34 586 1 559 0.0 632
Msa1296800 AT5G67385.2 60.627 574 190 11 34 586 1 559 0.0 632
Msa1296800 AT5G67385.3 60.627 574 190 11 34 586 1 559 0.0 632
Msa1296800 AT3G49970.1 50.260 577 205 16 25 586 6 515 4.34e-174 503
Msa1296800 AT3G49970.2 50.260 577 205 16 25 586 6 515 4.34e-174 503
Msa1296800 AT5G48800.1 41.308 581 287 10 4 561 33 582 2.96e-144 431
Msa1296800 AT2G30520.1 38.160 587 302 10 1 564 18 566 4.47e-128 388
Msa1296800 AT1G03010.1 37.795 635 321 19 1 586 25 634 3.13e-120 369
Msa1296800 AT2G47860.1 40.036 552 280 14 1 517 26 561 4.54e-120 369
Msa1296800 AT1G03010.2 37.619 630 320 18 6 586 2 607 4.00e-119 366
Msa1296800 AT1G03010.3 37.821 624 315 18 12 586 34 633 1.62e-118 365
Msa1296800 AT3G08570.1 36.041 591 298 13 12 561 33 584 2.08e-116 359
Msa1296800 AT2G47860.3 38.435 575 280 15 1 517 26 584 1.09e-114 356
Msa1296800 AT2G30520.2 37.297 555 287 10 33 564 2 518 3.47e-111 343
Msa1296800 AT2G30520.3 37.297 555 287 10 33 564 2 518 3.47e-111 343
Msa1296800 AT3G08660.1 35.501 569 304 13 12 561 33 557 6.31e-105 328
Msa1296800 AT1G30440.1 33.879 611 337 16 2 556 15 614 2.88e-100 318
Msa1296800 AT5G03250.1 34.799 546 306 12 7 508 20 559 4.85e-97 308
Msa1296800 AT3G08660.3 35.490 541 286 13 40 561 1 497 2.44e-95 301
Msa1296800 AT2G47860.4 40.878 433 212 11 1 404 26 443 1.36e-92 292
Msa1296800 AT5G13600.1 36.049 491 269 12 7 462 20 500 2.18e-91 293
Msa1296800 AT5G66560.1 32.609 644 329 19 7 556 13 645 2.62e-91 295
Msa1296800 AT2G47860.5 38.876 445 237 10 98 517 9 443 9.65e-89 284
Msa1296800 AT2G47860.2 38.876 445 237 10 98 517 9 443 9.65e-89 284
Msa1296800 AT2G47860.6 38.816 456 212 12 1 404 26 466 1.79e-87 279
Msa1296800 AT5G66560.3 32.748 626 316 19 25 556 2 616 2.94e-86 281
Msa1296800 AT5G66560.4 34.296 554 301 17 55 556 64 606 4.14e-84 275
Msa1296800 AT2G14820.2 34.137 539 302 16 12 511 26 550 2.15e-81 268
Msa1296800 AT2G14820.1 34.137 539 302 16 12 511 26 550 2.15e-81 268
Msa1296800 AT5G67440.3 34.292 487 283 13 10 473 24 496 4.25e-78 258
Msa1296800 AT5G67440.1 34.292 487 283 13 10 473 24 496 4.25e-78 258
Msa1296800 AT4G31820.1 32.157 510 293 13 12 496 26 507 4.36e-77 255
Msa1296800 AT1G67900.5 36.145 498 255 11 10 455 23 509 7.41e-77 256
Msa1296800 AT1G67900.1 36.145 498 255 11 10 455 23 509 7.41e-77 256
Msa1296800 AT1G67900.3 36.145 498 255 11 10 455 23 509 7.41e-77 256
Msa1296800 AT1G67900.6 36.145 498 255 11 10 455 23 509 7.41e-77 256
Msa1296800 AT1G67900.2 36.145 498 255 11 10 455 23 509 7.41e-77 256
Msa1296800 AT1G67900.4 36.145 498 255 11 10 455 23 509 7.41e-77 256
Msa1296800 AT3G44820.1 28.924 567 346 12 2 517 12 572 1.09e-75 253
Msa1296800 AT5G10250.2 32.535 501 262 11 2 457 39 508 1.33e-75 252
Msa1296800 AT4G37590.1 32.946 516 279 14 10 500 24 497 5.48e-75 249
Msa1296800 AT3G50840.1 30.443 542 332 9 2 525 5 519 2.71e-74 248
Msa1296800 AT5G10250.1 32.720 489 262 11 2 457 39 493 9.94e-74 247
Msa1296800 AT5G67440.2 34.328 469 271 13 28 473 5 459 3.05e-72 241
Msa1296800 AT5G03250.2 34.216 453 258 11 90 508 1 447 1.71e-71 238
Msa1296800 AT3G08660.2 34.383 413 225 9 12 406 33 417 1.03e-68 229
Msa1296800 AT5G47800.3 30.595 487 286 13 12 472 25 485 3.49e-66 226
Msa1296800 AT5G47800.1 30.595 487 286 13 12 472 25 485 3.49e-66 226
Msa1296800 AT5G47800.4 30.595 487 286 13 12 472 25 485 3.49e-66 226
Msa1296800 AT3G26490.1 30.382 497 283 10 10 455 23 507 4.81e-66 226
Msa1296800 AT3G26490.3 30.382 497 283 10 10 455 23 507 4.81e-66 226
Msa1296800 AT3G26490.4 30.382 497 283 10 10 455 23 507 4.81e-66 226
Msa1296800 AT2G23050.1 30.917 469 275 10 10 464 24 457 1.21e-65 222
Msa1296800 AT5G47800.2 30.309 485 290 12 12 472 138 598 5.25e-65 225
Msa1296800 AT4G31820.2 30.913 482 280 13 40 496 1 454 1.35e-64 220
Msa1296800 AT5G66560.2 32.272 471 242 12 7 404 13 479 2.74e-63 216
Msa1296800 AT3G50840.2 30.000 510 312 9 34 525 1 483 3.28e-63 217
Msa1296800 AT3G50840.3 30.000 510 312 9 34 525 1 483 3.28e-63 217
Msa1296800 AT1G52770.1 33.333 357 200 7 185 512 28 375 1.58e-51 184
Msa1296800 AT3G26490.2 28.859 447 255 10 10 405 23 457 8.14e-50 180
Msa1296800 AT5G64330.3 37.011 281 142 5 246 493 313 591 1.22e-49 182
Msa1296800 AT5G64330.3 35.931 231 114 6 30 229 10 237 8.61e-33 133
Msa1296800 AT5G64330.1 34.868 304 158 5 246 509 372 675 1.63e-49 183
Msa1296800 AT5G64330.1 36.434 258 130 6 3 229 42 296 3.72e-41 159
Msa1296800 AT5G64330.2 37.011 281 142 5 246 493 372 650 3.14e-49 181
Msa1296800 AT5G64330.2 36.434 258 130 6 3 229 42 296 1.42e-41 160
Msa1296800 AT2G23050.2 29.787 376 228 8 90 464 1 341 5.76e-47 169
Msa1296800 AT5G48130.1 26.511 513 300 14 7 483 33 504 2.56e-45 170
Msa1296800 AT3G15570.1 34.266 286 161 5 194 461 38 314 1.33e-43 162
Msa1296800 AT3G22104.1 27.865 445 276 13 15 442 6 422 4.92e-37 144
Msa1296800 AT3G19850.1 26.170 470 269 12 33 453 23 463 5.86e-36 142
Msa1296800 AT1G50280.1 27.742 465 285 12 15 443 5 454 8.04e-33 132
Msa1296800 AT1G50280.2 28.401 419 253 10 57 443 18 421 6.64e-31 126
Msa1296800 AT5G17580.2 25.641 468 299 13 15 460 22 462 7.43e-31 127
Msa1296800 AT5G17580.1 25.000 512 331 14 15 500 7 491 1.23e-30 126
Msa1296800 AT3G03510.1 26.225 408 236 12 69 460 8 366 2.70e-26 112
Msa1296800 AT3G22104.4 26.593 361 229 8 92 442 13 347 6.81e-25 108
Msa1296800 AT3G22104.2 26.593 361 229 8 92 442 13 347 6.81e-25 108
Msa1296800 AT3G22104.3 26.593 361 229 8 92 442 13 347 6.81e-25 108

Find 121 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGAATTTGAGCCACATTT+TGG 0.185225 8_3:+56524458 None:intergenic
GTCTAGTTGTATGCGATCTT+TGG 0.210752 8_3:+56524072 None:intergenic
CCATTCACTTGTTCTCTTCA+TGG 0.260781 8_3:+56527447 None:intergenic
AGATTATTCGGTCGGAAATT+TGG 0.273291 8_3:-56526625 Msa1296800:CDS
CTGTCAGCTTTCTTTCACTA+TGG 0.279955 8_3:-56525482 Msa1296800:CDS
TGTGAATAAAGCATTATAAT+AGG 0.301041 8_3:+56526255 None:intergenic
GAGTTTAGGAATGACTTTCT+AGG 0.305347 8_3:+56524157 None:intergenic
CTACAATGTGACTGTGATTA+AGG 0.310866 8_3:+56527524 None:intergenic
TTGAGACAACTGTTGCTTGC+AGG 0.327110 8_3:-56525440 Msa1296800:CDS
TTTGTAAGATATTTATTTGC+AGG 0.329856 8_3:-56523909 Msa1296800:three_prime_UTR
AGTGATGTCGCTATTCAAAT+TGG 0.360026 8_3:-56527287 Msa1296800:CDS
TGTTGCTTGCAGGTTTGATT+TGG 0.361308 8_3:-56525430 Msa1296800:CDS
AAAATATCTTGCACAAAATC+AGG 0.361655 8_3:+56524027 None:intergenic
CATTCTTCTCCCTTGGCATA+AGG 0.363104 8_3:+56525511 None:intergenic
TCTTGCACAAAATCAGGATA+TGG 0.373271 8_3:+56524033 None:intergenic
TGAAATGACAGAAGATTATT+CGG 0.380236 8_3:-56526637 Msa1296800:intron
CTTTCTTTCACTATGGCTTA+AGG 0.386758 8_3:-56525475 Msa1296800:CDS
TCTCTTCATGGCACTAGAAA+TGG 0.387904 8_3:+56527459 None:intergenic
ATAAAACCCTTCACGGTTGC+GGG 0.388595 8_3:-56527491 Msa1296800:five_prime_UTR
GCGCCTCTCGTGATAGCTTC+TGG 0.389792 8_3:+56524515 None:intergenic
TATGCATGGGAAATGTTAAC+CGG 0.392483 8_3:-56523946 Msa1296800:three_prime_UTR
AGAAGGATAGCCATGCAATT+AGG 0.395560 8_3:-56525405 Msa1296800:CDS
TCTAGTTGTATGCGATCTTT+GGG 0.404869 8_3:+56524073 None:intergenic
TTTAACAAAGGACTATTGAT+AGG 0.405011 8_3:+56524214 None:intergenic
AAGAGTTCTAATTGCAATGA+TGG 0.405470 8_3:-56526307 Msa1296800:CDS
TTTCCATTAATTTCGAAAAG+TGG 0.409367 8_3:-56526940 Msa1296800:CDS
CTCCTTCCCGCAACCGTGAA+GGG 0.413042 8_3:+56527485 None:intergenic
GCTTCCAAGGAGAGTCAGTT+TGG 0.413724 8_3:-56526456 Msa1296800:CDS
GTTGCACTAAAGAGCATGTC+AGG 0.420005 8_3:-56526573 Msa1296800:CDS
GAGAGTCAGTTTGGTTCATC+TGG 0.422018 8_3:-56526447 Msa1296800:CDS
ACATCGATGAGTTCAATTAA+TGG 0.432599 8_3:+56526868 None:intergenic
ACAGAAATCTCTGAGAGGTT+TGG 0.436903 8_3:-56526235 Msa1296800:intron
TTTCGAAAAGTGGACACATA+AGG 0.437270 8_3:-56526930 Msa1296800:CDS
ACCAATCAACAGCTGGCCTC+TGG 0.440922 8_3:+56526370 None:intergenic
CGACATCACTTGGAATCTCC+TGG 0.445103 8_3:+56527300 None:intergenic
TTCCTCTTGTCAGGTGTTGA+AGG 0.446976 8_3:+56524373 None:intergenic
ACCAGAGGCCAGCTGTTGAT+TGG 0.449238 8_3:-56526371 Msa1296800:CDS
CACTACCTTGTGTAACGAAT+AGG 0.451183 8_3:+56527256 None:intergenic
GAGTATACATTCCTCTTGTC+AGG 0.452843 8_3:+56524364 None:intergenic
AGCCGTAGACATCTATCTTA+AGG 0.453245 8_3:-56525088 Msa1296800:intron
CCTCCTTCCCGCAACCGTGA+AGG 0.457093 8_3:+56527484 None:intergenic
TAGCAGCAAAGTTCTGTTAC+GGG 0.457361 8_3:-56526819 Msa1296800:CDS
GATATTGCATTCTTCTCCCT+TGG 0.461512 8_3:+56525504 None:intergenic
AGAGGCCAGCTGTTGATTGG+TGG 0.462714 8_3:-56526368 Msa1296800:CDS
CCCACGCTGCACAAAACAAC+AGG 0.463975 8_3:-56524489 Msa1296800:CDS
CTGTCCGTGTCGCTTACAAA+TGG 0.464751 8_3:+56524565 None:intergenic
AACTCAGTTTCAAGAAAACT+TGG 0.478198 8_3:-56524139 Msa1296800:CDS
AAATCAAGAACAACAGAAGA+TGG 0.483167 8_3:-56525120 Msa1296800:CDS
AAAGAAAGTTTGCAGCATGA+TGG 0.486600 8_3:-56524542 Msa1296800:CDS
ACTCTCCTTGGAAGCTATGT+AGG 0.486973 8_3:+56526464 None:intergenic
TGAACCAAACTGACTCTCCT+TGG 0.490716 8_3:+56526452 None:intergenic
CGGATACATAAAACCCTTCA+CGG 0.494662 8_3:-56527498 Msa1296800:five_prime_UTR
ACAGGATGAGCACGTTGAAA+AGG 0.498236 8_3:+56524106 None:intergenic
CATAAAACCCTTCACGGTTG+CGG 0.498418 8_3:-56527492 Msa1296800:five_prime_UTR
GATGTGTCGCCGCTAAATGA+AGG 0.498482 8_3:+56525354 None:intergenic
GTATTATTCTTCTCCACAAA+GGG 0.500177 8_3:-56525250 Msa1296800:CDS
AGGAATGACTTTCTAGGCAA+AGG 0.500562 8_3:+56524163 None:intergenic
ATTTGAATAGCGACATCACT+TGG 0.501604 8_3:+56527290 None:intergenic
TTGGAAACCTCATTAGAAGC+TGG 0.504132 8_3:+56524328 None:intergenic
CTAGCAGCAAAGTTCTGTTA+CGG 0.504241 8_3:-56526820 Msa1296800:CDS
TCAAATGCTTCTGCTCCACC+AGG 0.514546 8_3:+56526844 None:intergenic
CTCTTCTCATGCTCTTCATG+TGG 0.516105 8_3:+56525558 None:intergenic
GATATTTGGAAAGGGAAGGA+AGG 0.520414 8_3:-56525589 Msa1296800:CDS
GAGCAGGAGATATTTGGAAA+GGG 0.520665 8_3:-56525597 Msa1296800:intron
AGTTTCTGATGTATGTAAGA+TGG 0.522762 8_3:+56526542 None:intergenic
GCTTTATCCAGCTTCTAATG+AGG 0.525232 8_3:-56524335 Msa1296800:CDS
GAGGCCAGCTGTTGATTGGT+GGG 0.529140 8_3:-56526367 Msa1296800:CDS
TCACAGTCACATTGTAGTCT+CGG 0.533562 8_3:-56527518 Msa1296800:five_prime_UTR
ATGGATGGCACTGGCAGCAT+AGG 0.533950 8_3:-56524406 Msa1296800:CDS
TTGTAAGATATTTATTTGCA+GGG 0.534022 8_3:-56523908 Msa1296800:three_prime_UTR
GGTTCATCTGGTAGAAGTGA+TGG 0.534039 8_3:-56526435 Msa1296800:CDS
TCTTTGGGACGTGCTATGAC+AGG 0.544164 8_3:+56524088 None:intergenic
TCAGCCCACCAATCAACAGC+TGG 0.545487 8_3:+56526363 None:intergenic
GGAGCAGGAGATATTTGGAA+AGG 0.547365 8_3:-56525598 Msa1296800:intron
TATTCGGTCGGAAATTTGGT+AGG 0.547468 8_3:-56526621 Msa1296800:CDS
CGCCTTCAACACCTGACAAG+AGG 0.552605 8_3:-56524375 Msa1296800:CDS
TTATCACAGGAATTACTCCC+AGG 0.555974 8_3:-56527318 Msa1296800:intron
GATAGCCATGCAATTAGGAC+AGG 0.556430 8_3:-56525400 Msa1296800:CDS
AGGAGATATTTGGAAAGGGA+AGG 0.557338 8_3:-56525593 Msa1296800:CDS
ATTGAACTCATCGATGTCCC+TGG 0.557723 8_3:-56526862 Msa1296800:CDS
AATAGCCTACATAGCTTCCA+AGG 0.561754 8_3:-56526469 Msa1296800:CDS
CCATGAAGAGAACAAGTGAA+TGG 0.562517 8_3:-56527447 Msa1296800:intron
GCAATTAGGACAGGCTGTGT+TGG 0.562742 8_3:-56525391 Msa1296800:CDS
CCTTCACGGTTGCGGGAAGG+AGG 0.563716 8_3:-56527484 Msa1296800:five_prime_UTR
GCAGGTTTGATTTGGAGAGA+AGG 0.563785 8_3:-56525422 Msa1296800:CDS
GCAACGTCTTCGCGACAACA+TGG 0.564907 8_3:-56524425 Msa1296800:CDS
TACTAGTGAGCCTTATGCCA+AGG 0.566316 8_3:-56525521 Msa1296800:CDS
CACAGCCTGTCCTAATTGCA+TGG 0.571835 8_3:+56525395 None:intergenic
CGCGACAACATGGATGGCAC+TGG 0.572937 8_3:-56524415 Msa1296800:CDS
AGTATTATTCTTCTCCACAA+AGG 0.574490 8_3:-56525251 Msa1296800:CDS
CTAATTGCAATGATGGCTAG+AGG 0.579105 8_3:-56526300 Msa1296800:CDS
ATGACAGAAGATTATTCGGT+CGG 0.582614 8_3:-56526633 Msa1296800:intron
ATGCATGGGAAATGTTAACC+GGG 0.582676 8_3:-56523945 Msa1296800:three_prime_UTR
AACCCTTCACGGTTGCGGGA+AGG 0.584422 8_3:-56527487 Msa1296800:five_prime_UTR
GACATCACTTGGAATCTCCT+GGG 0.585133 8_3:+56527301 None:intergenic
TGGCCTCTGGTGAGAAGCAG+TGG 0.585433 8_3:+56526383 None:intergenic
ATTAGAAGCTGGATAAAGCT+CGG 0.591749 8_3:+56524339 None:intergenic
CAGGCTTCCTGCCCAAAATG+TGG 0.597481 8_3:-56524470 Msa1296800:CDS
GGGAAATGTTAACCGGGGAA+AGG 0.597771 8_3:-56523939 Msa1296800:three_prime_UTR
TAATTGCAATGATGGCTAGA+GGG 0.601649 8_3:-56526299 Msa1296800:CDS
AAAGGAGGCTTATCAGCTGA+AGG 0.602067 8_3:+56524181 None:intergenic
CGTCTTCGCGACAACATGGA+TGG 0.604136 8_3:-56524421 Msa1296800:CDS
TACCTTAAGATAGATGTCTA+CGG 0.604585 8_3:+56525086 None:intergenic
CTTCCACTGCTTCTCACCAG+AGG 0.605670 8_3:-56526386 Msa1296800:CDS
AGGCTATTGCATCTATGCAT+CGG 0.609119 8_3:+56526484 None:intergenic
GTTGTGCGTGATATTATGCA+TGG 0.609354 8_3:-56523960 Msa1296800:three_prime_UTR
CACGTTGAAAAGGAGAAAGA+CGG 0.618103 8_3:+56524116 None:intergenic
GGTGATGATGCATTTAACAA+AGG 0.620143 8_3:+56524202 None:intergenic
AGCTTCCTATTCGTTACACA+AGG 0.621103 8_3:-56527261 Msa1296800:intron
ACTAGTGAGCCTTATGCCAA+GGG 0.621863 8_3:-56525520 Msa1296800:CDS
TTGCACTAAAGAGCATGTCA+GGG 0.650226 8_3:-56526572 Msa1296800:CDS
TATCAGTAGCTATTTCAGCA+AGG 0.650241 8_3:+56525193 None:intergenic
AATGACTTTCTAGGCAAAGG+AGG 0.650612 8_3:+56524166 None:intergenic
GAACTCATCGATGTCCCTGG+TGG 0.659259 8_3:-56526859 Msa1296800:CDS
TGCACTAAAGAGCATGTCAG+GGG 0.667865 8_3:-56526571 Msa1296800:CDS
TTGTGCGTGATATTATGCAT+GGG 0.675438 8_3:-56523959 Msa1296800:three_prime_UTR
TTTCCAGAAGCTATCACGAG+AGG 0.681776 8_3:-56524518 Msa1296800:CDS
TATTCACAGAAATCTCTGAG+AGG 0.685412 8_3:-56526240 Msa1296800:CDS
CAAATGCTTCTGCTCCACCA+GGG 0.690096 8_3:+56526845 None:intergenic
TGCATGGGAAATGTTAACCG+GGG 0.704804 8_3:-56523944 Msa1296800:three_prime_UTR
ACATCCATTTGTAAGCGACA+CGG 0.708353 8_3:-56524569 Msa1296800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATAAAAATAAAAGAGA+CGG - chr8_3:56527210-56527229 Msa1296800:intron 10.0%
!!! GTTTTTTTATCAATAGTAAT+AGG - chr8_3:56524425-56524444 Msa1296800:CDS 15.0%
!! TAAATATAAGTTTATAAGTG+AGG + chr8_3:56525700-56525719 None:intergenic 15.0%
!! TCACTTATAAACTTATATTT+AGG - chr8_3:56525699-56525718 Msa1296800:intron 15.0%
!!! TTATATTTTATCTAAACTAG+TGG + chr8_3:56525765-56525784 None:intergenic 15.0%
!!! CAAGATATTTTTATCTTTTT+TGG - chr8_3:56527455-56527474 Msa1296800:exon 15.0%
!! ATATCAAACTTACTAATCAT+AGG - chr8_3:56524248-56524267 Msa1296800:CDS 20.0%
!!! TGTGAATAAAGCATTATAAT+AGG + chr8_3:56525218-56525237 None:intergenic 20.0%
!!! AAAATTTTAAGATGGTATCA+GGG + chr8_3:56525625-56525644 None:intergenic 20.0%
!! AATTCTAACTTTATTAGCAT+TGG + chr8_3:56526867-56526886 None:intergenic 20.0%
!!! TTCATTTTCTCTTCTTAATT+TGG + chr8_3:56527164-56527183 None:intergenic 20.0%
!! TTTGTAAGATATTTATTTGC+AGG - chr8_3:56527561-56527580 Msa1296800:five_prime_UTR 20.0%
!! TTGTAAGATATTTATTTGCA+GGG - chr8_3:56527562-56527581 Msa1296800:five_prime_UTR 20.0%
! TGATAAGTAGTTCAATTCAA+AGG + chr8_3:56524138-56524157 None:intergenic 25.0%
! CTAATCATAGGATCATTAAA+TGG - chr8_3:56524260-56524279 Msa1296800:CDS 25.0%
! TTTCCATTAATTTCGAAAAG+TGG - chr8_3:56524530-56524549 Msa1296800:CDS 25.0%
! TGAAATGACAGAAGATTATT+CGG - chr8_3:56524833-56524852 Msa1296800:intron 25.0%
! AACTTTCCTTCTTTAGTAAA+GGG + chr8_3:56525266-56525285 None:intergenic 25.0%
! AAACTTTCCTTCTTTAGTAA+AGG + chr8_3:56525267-56525286 None:intergenic 25.0%
!!! TTTCATATCAGTTTTGTTCT+AGG - chr8_3:56525285-56525304 Msa1296800:CDS 25.0%
! TGAAAATACCTTTATAAGGT+AGG + chr8_3:56525458-56525477 None:intergenic 25.0%
!!! TACCTTATAAAGGTATTTTC+AGG - chr8_3:56525457-56525476 Msa1296800:CDS 25.0%
!!! CAAAATTTTAAGATGGTATC+AGG + chr8_3:56525626-56525645 None:intergenic 25.0%
!! CTGATACCATCTTAAAATTT+TGG - chr8_3:56525624-56525643 Msa1296800:intron 25.0%
!! ACCATCTTAAAATTTTGGAT+TGG - chr8_3:56525629-56525648 Msa1296800:intron 25.0%
!! CCATCTTAAAATTTTGGATT+GGG - chr8_3:56525630-56525649 Msa1296800:intron 25.0%
! TATAAGTTTATAAGTGAGGT+CGG + chr8_3:56525696-56525715 None:intergenic 25.0%
! AAGATTTGATTAGATGTATG+TGG + chr8_3:56525725-56525744 None:intergenic 25.0%
!!! ATTGAACCTTGACTATTTTT+TGG - chr8_3:56525851-56525870 Msa1296800:intron 25.0%
! ATTTACGACAACAATTTAGA+TGG - chr8_3:56526470-56526489 Msa1296800:CDS 25.0%
! AAAATTGTGGTTAAGTATGA+TGG + chr8_3:56526572-56526591 None:intergenic 25.0%
! CAATTTGTGTTCAAAAATTG+TGG + chr8_3:56526585-56526604 None:intergenic 25.0%
!! CAATTTTTGAACACAAATTG+TGG - chr8_3:56526585-56526604 Msa1296800:CDS 25.0%
! AGTATTATCCTTGAAATCAA+AGG - chr8_3:56526796-56526815 Msa1296800:CDS 25.0%
! AGTTAGAATTCAAAATTCTC+AGG - chr8_3:56526877-56526896 Msa1296800:CDS 25.0%
! TTTAACAAAGGACTATTGAT+AGG + chr8_3:56527259-56527278 None:intergenic 25.0%
! AAAATATCTTGCACAAAATC+AGG + chr8_3:56527446-56527465 None:intergenic 25.0%
! TATATGTATTTTGTGCTGAG+TGG + chr8_3:56523886-56523905 None:intergenic 30.0%
!! TGTTTTGTATTTGCTGCATT+TGG + chr8_3:56523925-56523944 None:intergenic 30.0%
AAACACGTTGATATTAGCAT+CGG + chr8_3:56524089-56524108 None:intergenic 30.0%
! TGCTAATATCAACGTGTTTT+TGG - chr8_3:56524090-56524109 Msa1296800:CDS 30.0%
TGAATTGAACTACTTATCAC+AGG - chr8_3:56524139-56524158 Msa1296800:CDS 30.0%
GACTAATGAATTCTAGTACT+TGG - chr8_3:56524284-56524303 Msa1296800:CDS 30.0%
!! TGTCCACTTTTCGAAATTAA+TGG + chr8_3:56524536-56524555 None:intergenic 30.0%
ACATCGATGAGTTCAATTAA+TGG + chr8_3:56524605-56524624 None:intergenic 30.0%
AGTTTCTGATGTATGTAAGA+TGG + chr8_3:56524931-56524950 None:intergenic 30.0%
! AATTTTGCTTTCTCTGCAAT+TGG + chr8_3:56524960-56524979 None:intergenic 30.0%
! AAGAGTTCTAATTGCAATGA+TGG - chr8_3:56525163-56525182 Msa1296800:CDS 30.0%
GGGTTTAAAAATTGTGGTAT+TGG - chr8_3:56525191-56525210 Msa1296800:CDS 30.0%
GACCTGAAAATACCTTTATA+AGG + chr8_3:56525462-56525481 None:intergenic 30.0%
!! CCCAATCCAAAATTTTAAGA+TGG + chr8_3:56525633-56525652 None:intergenic 30.0%
! CTTCTTTTTCCTTCATTTAG+CGG - chr8_3:56526107-56526126 Msa1296800:intron 30.0%
! GATTTTCAACTTCAGATTCA+AGG + chr8_3:56526181-56526200 None:intergenic 30.0%
AGTATTATTCTTCTCCACAA+AGG - chr8_3:56526219-56526238 Msa1296800:intron 30.0%
GTATTATTCTTCTCCACAAA+GGG - chr8_3:56526220-56526239 Msa1296800:intron 30.0%
! TCTGTTGTTCTTGATTTTTC+AGG + chr8_3:56526347-56526366 None:intergenic 30.0%
AAATCAAGAACAACAGAAGA+TGG - chr8_3:56526350-56526369 Msa1296800:CDS 30.0%
TACCTTAAGATAGATGTCTA+CGG + chr8_3:56526387-56526406 None:intergenic 30.0%
GACGATTATTGAGTATAACA+AGG - chr8_3:56526531-56526550 Msa1296800:CDS 30.0%
GTAAGTTCAATTCTGTTATG+TGG + chr8_3:56526773-56526792 None:intergenic 30.0%
! AGTTAAGTCCTTTGATTTCA+AGG + chr8_3:56526807-56526826 None:intergenic 30.0%
! GTTTTCTTGAAACTGAGTTT+AGG + chr8_3:56527330-56527349 None:intergenic 30.0%
AACTCAGTTTCAAGAAAACT+TGG - chr8_3:56527331-56527350 Msa1296800:intron 30.0%
!!! GTTTTGTTTTGTTCACTTAG+TGG - chr8_3:56527590-56527609 Msa1296800:five_prime_UTR 30.0%
! TGCTTTTATGAGAGTTTGAG+TGG + chr8_3:56523859-56523878 None:intergenic 35.0%
CTACAATGTGACTGTGATTA+AGG + chr8_3:56523949-56523968 None:intergenic 35.0%
ATTTGAATAGCGACATCACT+TGG + chr8_3:56524183-56524202 None:intergenic 35.0%
AGTGATGTCGCTATTCAAAT+TGG - chr8_3:56524183-56524202 Msa1296800:CDS 35.0%
! ATTTAGTTGACTTCGCGTAT+TGG - chr8_3:56524370-56524389 Msa1296800:CDS 35.0%
TTTCGAAAAGTGGACACATA+AGG - chr8_3:56524540-56524559 Msa1296800:CDS 35.0%
ATGACAGAAGATTATTCGGT+CGG - chr8_3:56524837-56524856 Msa1296800:intron 35.0%
AGATTATTCGGTCGGAAATT+TGG - chr8_3:56524845-56524864 Msa1296800:intron 35.0%
TAATTGCAATGATGGCTAGA+GGG - chr8_3:56525171-56525190 Msa1296800:CDS 35.0%
GCTAGAGGGTTTAAAAATTG+TGG - chr8_3:56525185-56525204 Msa1296800:CDS 35.0%
TATTCACAGAAATCTCTGAG+AGG - chr8_3:56525230-56525249 Msa1296800:CDS 35.0%
GTAAGTCCCTTTACTAAAGA+AGG - chr8_3:56525257-56525276 Msa1296800:CDS 35.0%
CCTTTATAAGGTAGGTAGTT+CGG + chr8_3:56525450-56525469 None:intergenic 35.0%
GTCTGTTAAGAGTCTCATAT+TGG + chr8_3:56525494-56525513 None:intergenic 35.0%
!!! TTTTTGGAGCAGGAGATATT+TGG - chr8_3:56525867-56525886 Msa1296800:intron 35.0%
CTTTCTTTCACTATGGCTTA+AGG - chr8_3:56525995-56526014 Msa1296800:intron 35.0%
! CTCCACAAAGGGATATTTTT+CGG - chr8_3:56526231-56526250 Msa1296800:intron 35.0%
! TCCACAAAGGGATATTTTTC+GGG - chr8_3:56526232-56526251 Msa1296800:intron 35.0%
!!! TTTTCGGGTTGGAAAGTTAT+TGG - chr8_3:56526247-56526266 Msa1296800:CDS 35.0%
! TATCAGTAGCTATTTCAGCA+AGG + chr8_3:56526280-56526299 None:intergenic 35.0%
GCTAAAGCAGTTCAAATATG+TGG - chr8_3:56526492-56526511 Msa1296800:CDS 35.0%
AATCTGTGTTCGCATATAGA+TGG + chr8_3:56526639-56526658 None:intergenic 35.0%
ATATGCGAACACAGATTAGA+TGG - chr8_3:56526642-56526661 Msa1296800:intron 35.0%
! CGTCGTTAACTATGATTTTC+AGG + chr8_3:56526700-56526719 None:intergenic 35.0%
GTTAACGACGTTCAAAATCA+AGG - chr8_3:56526710-56526729 Msa1296800:intron 35.0%
AAAGAAAGTTTGCAGCATGA+TGG - chr8_3:56526928-56526947 Msa1296800:CDS 35.0%
! GAGAATTTGAGCCACATTTT+GGG + chr8_3:56527014-56527033 None:intergenic 35.0%
! AGAGAATTTGAGCCACATTT+TGG + chr8_3:56527015-56527034 None:intergenic 35.0%
ATTAGAAGCTGGATAAAGCT+CGG + chr8_3:56527134-56527153 None:intergenic 35.0%
! GGTGATGATGCATTTAACAA+AGG + chr8_3:56527271-56527290 None:intergenic 35.0%
GAGTTTAGGAATGACTTTCT+AGG + chr8_3:56527316-56527335 None:intergenic 35.0%
TCTAGTTGTATGCGATCTTT+GGG + chr8_3:56527400-56527419 None:intergenic 35.0%
TCTTGCACAAAATCAGGATA+TGG + chr8_3:56527440-56527459 None:intergenic 35.0%
TTGTGCGTGATATTATGCAT+GGG - chr8_3:56527511-56527530 Msa1296800:five_prime_UTR 35.0%
TATGCATGGGAAATGTTAAC+CGG - chr8_3:56527524-56527543 Msa1296800:five_prime_UTR 35.0%
! ACAAATGTTTTACCTTTCCC+CGG + chr8_3:56527546-56527565 None:intergenic 35.0%
TCACAGTCACATTGTAGTCT+CGG - chr8_3:56523952-56523971 Msa1296800:three_prime_UTR 40.0%
CGGATACATAAAACCCTTCA+CGG - chr8_3:56523972-56523991 Msa1296800:three_prime_UTR 40.0%
TCTCTTCATGGCACTAGAAA+TGG + chr8_3:56524014-56524033 None:intergenic 40.0%
CCATTCACTTGTTCTCTTCA+TGG + chr8_3:56524026-56524045 None:intergenic 40.0%
CCATGAAGAGAACAAGTGAA+TGG - chr8_3:56524023-56524042 Msa1296800:three_prime_UTR 40.0%
ACAAGTGAATGGTATGCTTC+TGG - chr8_3:56524034-56524053 Msa1296800:exon 40.0%
TTATCACAGGAATTACTCCC+AGG - chr8_3:56524152-56524171 Msa1296800:CDS 40.0%
AGCTTCCTATTCGTTACACA+AGG - chr8_3:56524209-56524228 Msa1296800:CDS 40.0%
CACTACCTTGTGTAACGAAT+AGG + chr8_3:56524217-56524236 None:intergenic 40.0%
CTAGCAGCAAAGTTCTGTTA+CGG - chr8_3:56524650-56524669 Msa1296800:intron 40.0%
TAGCAGCAAAGTTCTGTTAC+GGG - chr8_3:56524651-56524670 Msa1296800:intron 40.0%
TATTCGGTCGGAAATTTGGT+AGG - chr8_3:56524849-56524868 Msa1296800:intron 40.0%
! TTGCACTAAAGAGCATGTCA+GGG - chr8_3:56524898-56524917 Msa1296800:intron 40.0%
AGGCTATTGCATCTATGCAT+CGG + chr8_3:56524989-56525008 None:intergenic 40.0%
AATAGCCTACATAGCTTCCA+AGG - chr8_3:56525001-56525020 Msa1296800:intron 40.0%
CTAATTGCAATGATGGCTAG+AGG - chr8_3:56525170-56525189 Msa1296800:CDS 40.0%
! ACAGAAATCTCTGAGAGGTT+TGG - chr8_3:56525235-56525254 Msa1296800:CDS 40.0%
TAAGATGAGTAGCCTGATAG+TGG - chr8_3:56525404-56525423 Msa1296800:CDS 40.0%
AAATCCAGATGTCCACTATC+AGG + chr8_3:56525419-56525438 None:intergenic 40.0%
ATAAGGTAGGTAGTTCGGTA+AGG + chr8_3:56525445-56525464 None:intergenic 40.0%
CCGAACTACCTACCTTATAA+AGG - chr8_3:56525447-56525466 Msa1296800:CDS 40.0%
GGGTCTATCCAATATCTGTT+GGG + chr8_3:56525605-56525624 None:intergenic 40.0%
AGGGTCTATCCAATATCTGT+TGG + chr8_3:56525606-56525625 None:intergenic 40.0%
TCTTACAGAACCAGCTTGTA+AGG - chr8_3:56525664-56525683 Msa1296800:intron 40.0%
CCTGCTCCAAAAAATAGTCA+AGG + chr8_3:56525860-56525879 None:intergenic 40.0%
!!! CCTTGACTATTTTTTGGAGC+AGG - chr8_3:56525857-56525876 Msa1296800:intron 40.0%
GAGCAGGAGATATTTGGAAA+GGG - chr8_3:56525873-56525892 Msa1296800:intron 40.0%
AGGAGATATTTGGAAAGGGA+AGG - chr8_3:56525877-56525896 Msa1296800:intron 40.0%
GATATTTGGAAAGGGAAGGA+AGG - chr8_3:56525881-56525900 Msa1296800:intron 40.0%
GATATTGCATTCTTCTCCCT+TGG + chr8_3:56525969-56525988 None:intergenic 40.0%
CTGTCAGCTTTCTTTCACTA+TGG - chr8_3:56525988-56526007 Msa1296800:intron 40.0%
! TGTTGCTTGCAGGTTTGATT+TGG - chr8_3:56526040-56526059 Msa1296800:intron 40.0%
AGAAGGATAGCCATGCAATT+AGG - chr8_3:56526065-56526084 Msa1296800:intron 40.0%
ACCCGAAAAATATCCCTTTG+TGG + chr8_3:56526236-56526255 None:intergenic 40.0%
!!! CAAAGGGATATTTTTCGGGT+TGG - chr8_3:56526236-56526255 Msa1296800:CDS 40.0%
AGCCGTAGACATCTATCTTA+AGG - chr8_3:56526382-56526401 Msa1296800:CDS 40.0%
ACATCCATTTGTAAGCGACA+CGG - chr8_3:56526901-56526920 Msa1296800:CDS 40.0%
GAGTATACATTCCTCTTGTC+AGG + chr8_3:56527109-56527128 None:intergenic 40.0%
GCTTTATCCAGCTTCTAATG+AGG - chr8_3:56527135-56527154 Msa1296800:intron 40.0%
TTGGAAACCTCATTAGAAGC+TGG + chr8_3:56527145-56527164 None:intergenic 40.0%
AATGACTTTCTAGGCAAAGG+AGG + chr8_3:56527307-56527326 None:intergenic 40.0%
AGGAATGACTTTCTAGGCAA+AGG + chr8_3:56527310-56527329 None:intergenic 40.0%
CACGTTGAAAAGGAGAAAGA+CGG + chr8_3:56527357-56527376 None:intergenic 40.0%
GTCTAGTTGTATGCGATCTT+TGG + chr8_3:56527401-56527420 None:intergenic 40.0%
GTTGTGCGTGATATTATGCA+TGG - chr8_3:56527510-56527529 Msa1296800:five_prime_UTR 40.0%
ATGCATGGGAAATGTTAACC+GGG - chr8_3:56527525-56527544 Msa1296800:five_prime_UTR 40.0%
CATAAAACCCTTCACGGTTG+CGG - chr8_3:56523978-56523997 Msa1296800:three_prime_UTR 45.0%
ATAAAACCCTTCACGGTTGC+GGG - chr8_3:56523979-56523998 Msa1296800:three_prime_UTR 45.0%
GACATCACTTGGAATCTCCT+GGG + chr8_3:56524172-56524191 None:intergenic 45.0%
ATTGAACTCATCGATGTCCC+TGG - chr8_3:56524608-56524627 Msa1296800:intron 45.0%
! GTTGCACTAAAGAGCATGTC+AGG - chr8_3:56524897-56524916 Msa1296800:intron 45.0%
! TGCACTAAAGAGCATGTCAG+GGG - chr8_3:56524899-56524918 Msa1296800:intron 45.0%
ACTCTCCTTGGAAGCTATGT+AGG + chr8_3:56525009-56525028 None:intergenic 45.0%
! TGAACCAAACTGACTCTCCT+TGG + chr8_3:56525021-56525040 None:intergenic 45.0%
! GAGAGTCAGTTTGGTTCATC+TGG - chr8_3:56525023-56525042 Msa1296800:intron 45.0%
GGTTCATCTGGTAGAAGTGA+TGG - chr8_3:56525035-56525054 Msa1296800:intron 45.0%
ATGTCCAATCCTGAGTGTGA+GGG + chr8_3:56525376-56525395 None:intergenic 45.0%
AATGTCCAATCCTGAGTGTG+AGG + chr8_3:56525377-56525396 None:intergenic 45.0%
CACACTCAGGATTGGACATT+TGG - chr8_3:56525377-56525396 Msa1296800:CDS 45.0%
!! CGCTCTAGATGTCCTGTTTT+GGG + chr8_3:56525541-56525560 None:intergenic 45.0%
!! ACGCTCTAGATGTCCTGTTT+TGG + chr8_3:56525542-56525561 None:intergenic 45.0%
GAAAGTGGCCCAACAGATAT+TGG - chr8_3:56525594-56525613 Msa1296800:CDS 45.0%
GGAGCAGGAGATATTTGGAA+AGG - chr8_3:56525872-56525891 Msa1296800:intron 45.0%
CTCTTCTCATGCTCTTCATG+TGG + chr8_3:56525915-56525934 None:intergenic 45.0%
! TACTAGTGAGCCTTATGCCA+AGG - chr8_3:56525949-56525968 Msa1296800:intron 45.0%
! ACTAGTGAGCCTTATGCCAA+GGG - chr8_3:56525950-56525969 Msa1296800:intron 45.0%
CATTCTTCTCCCTTGGCATA+AGG + chr8_3:56525962-56525981 None:intergenic 45.0%
! TTGAGACAACTGTTGCTTGC+AGG - chr8_3:56526030-56526049 Msa1296800:intron 45.0%
!! GCAGGTTTGATTTGGAGAGA+AGG - chr8_3:56526048-56526067 Msa1296800:intron 45.0%
GATAGCCATGCAATTAGGAC+AGG - chr8_3:56526070-56526089 Msa1296800:intron 45.0%
TTTCCAGAAGCTATCACGAG+AGG - chr8_3:56526952-56526971 Msa1296800:intron 45.0%
! ATTTGAGCCACATTTTGGGC+AGG + chr8_3:56527010-56527029 None:intergenic 45.0%
!! TTCCTCTTGTCAGGTGTTGA+AGG + chr8_3:56527100-56527119 None:intergenic 45.0%
AAAGGAGGCTTATCAGCTGA+AGG + chr8_3:56527292-56527311 None:intergenic 45.0%
ACAGGATGAGCACGTTGAAA+AGG + chr8_3:56527367-56527386 None:intergenic 45.0%
TGCATGGGAAATGTTAACCG+GGG - chr8_3:56527526-56527545 Msa1296800:five_prime_UTR 45.0%
!!! ATGTATAATTTTTTTTTATA+CGG - chr8_3:56525793-56525812 Msa1296800:intron 5.0%
!! TTGTTATATATATATATATA+TGG - chr8_3:56527617-56527636 Msa1296800:five_prime_UTR 5.0%
CGACATCACTTGGAATCTCC+TGG + chr8_3:56524173-56524192 None:intergenic 50.0%
CAAATGCTTCTGCTCCACCA+GGG + chr8_3:56524628-56524647 None:intergenic 50.0%
TCAAATGCTTCTGCTCCACC+AGG + chr8_3:56524629-56524648 None:intergenic 50.0%
CATCGCTATGCTTCGATGTG+TGG - chr8_3:56524700-56524719 Msa1296800:intron 50.0%
GCTTCCAAGGAGAGTCAGTT+TGG - chr8_3:56525014-56525033 Msa1296800:intron 50.0%
TAACACATCCCCTCACACTC+AGG - chr8_3:56525364-56525383 Msa1296800:CDS 50.0%
TGTCCAATCCTGAGTGTGAG+GGG + chr8_3:56525375-56525394 None:intergenic 50.0%
!! GTAGCCTGATAGTGGACATC+TGG - chr8_3:56525412-56525431 Msa1296800:CDS 50.0%
!! TCCTGTTTTGGGCGTGAATG+GGG + chr8_3:56525530-56525549 None:intergenic 50.0%
!! GTCCTGTTTTGGGCGTGAAT+GGG + chr8_3:56525531-56525550 None:intergenic 50.0%
!! TGTCCTGTTTTGGGCGTGAA+TGG + chr8_3:56525532-56525551 None:intergenic 50.0%
! AGGACATCTAGAGCGTGACA+CGG - chr8_3:56525546-56525565 Msa1296800:CDS 50.0%
TCGGTCTTCACCTTACAAGC+TGG + chr8_3:56525677-56525696 None:intergenic 50.0%
CACAGCCTGTCCTAATTGCA+TGG + chr8_3:56526078-56526097 None:intergenic 50.0%
GCAATTAGGACAGGCTGTGT+TGG - chr8_3:56526079-56526098 Msa1296800:intron 50.0%
GATGTGTCGCCGCTAAATGA+AGG + chr8_3:56526119-56526138 None:intergenic 50.0%
!! CTGTCCGTGTCGCTTACAAA+TGG + chr8_3:56526908-56526927 None:intergenic 50.0%
!!! CCTGTTGTTTTGTGCAGCGT+GGG + chr8_3:56526984-56527003 None:intergenic 50.0%
!! TCTTTGGGACGTGCTATGAC+AGG + chr8_3:56527385-56527404 None:intergenic 50.0%
GGGAAATGTTAACCGGGGAA+AGG - chr8_3:56527531-56527550 Msa1296800:five_prime_UTR 50.0%
GAACTCATCGATGTCCCTGG+TGG - chr8_3:56524611-56524630 Msa1296800:intron 55.0%
CTTCCACTGCTTCTCACCAG+AGG - chr8_3:56525084-56525103 Msa1296800:intron 55.0%
ACCAGAGGCCAGCTGTTGAT+TGG - chr8_3:56525099-56525118 Msa1296800:CDS 55.0%
! ACCAATCAACAGCTGGCCTC+TGG + chr8_3:56525103-56525122 None:intergenic 55.0%
! AGAGGCCAGCTGTTGATTGG+TGG - chr8_3:56525102-56525121 Msa1296800:CDS 55.0%
! GAGGCCAGCTGTTGATTGGT+GGG - chr8_3:56525103-56525122 Msa1296800:CDS 55.0%
TCAGCCCACCAATCAACAGC+TGG + chr8_3:56525110-56525129 None:intergenic 55.0%
CATCCCCTCACACTCAGGAT+TGG - chr8_3:56525369-56525388 Msa1296800:CDS 55.0%
! TTTTGGGCGTGAATGGGGTG+GGG + chr8_3:56525525-56525544 None:intergenic 55.0%
!! GTTTTGGGCGTGAATGGGGT+GGG + chr8_3:56525526-56525545 None:intergenic 55.0%
!! TGTTTTGGGCGTGAATGGGG+TGG + chr8_3:56525527-56525546 None:intergenic 55.0%
ACCCCATTCACGCCCAAAAC+AGG - chr8_3:56525526-56525545 Msa1296800:CDS 55.0%
! GGACATCTAGAGCGTGACAC+GGG - chr8_3:56525547-56525566 Msa1296800:CDS 55.0%
TCTACCAGGTCACGTGCAAC+TGG + chr8_3:56525576-56525595 None:intergenic 55.0%
GCACGTGACCTGGTAGAAAG+TGG - chr8_3:56525579-56525598 Msa1296800:CDS 55.0%
! CTGTTGGGCCACTTTCTACC+AGG + chr8_3:56525590-56525609 None:intergenic 55.0%
CCCACGCTGCACAAAACAAC+AGG - chr8_3:56526981-56527000 Msa1296800:intron 55.0%
!!! GCCTGTTGTTTTGTGCAGCG+TGG + chr8_3:56526985-56527004 None:intergenic 55.0%
CAGGCTTCCTGCCCAAAATG+TGG - chr8_3:56527000-56527019 Msa1296800:intron 55.0%
GCAACGTCTTCGCGACAACA+TGG - chr8_3:56527045-56527064 Msa1296800:intron 55.0%
CGTCTTCGCGACAACATGGA+TGG - chr8_3:56527049-56527068 Msa1296800:intron 55.0%
!! ATGGATGGCACTGGCAGCAT+AGG - chr8_3:56527064-56527083 Msa1296800:intron 55.0%
CGCCTTCAACACCTGACAAG+AGG - chr8_3:56527095-56527114 Msa1296800:intron 55.0%
AACCCTTCACGGTTGCGGGA+AGG - chr8_3:56523983-56524002 Msa1296800:three_prime_UTR 60.0%
CTCCTTCCCGCAACCGTGAA+GGG + chr8_3:56523988-56524007 None:intergenic 60.0%
TGGCCTCTGGTGAGAAGCAG+TGG + chr8_3:56525090-56525109 None:intergenic 60.0%
TTTGGGCGTGAATGGGGTGG+GGG + chr8_3:56525524-56525543 None:intergenic 60.0%
GTAGCCAGTTGCACGTGACC+TGG - chr8_3:56525569-56525588 Msa1296800:CDS 60.0%
GCGCCTCTCGTGATAGCTTC+TGG + chr8_3:56526958-56526977 None:intergenic 60.0%
CGCGACAACATGGATGGCAC+TGG - chr8_3:56527055-56527074 Msa1296800:intron 60.0%
CCTCCTTCCCGCAACCGTGA+AGG + chr8_3:56523989-56524008 None:intergenic 65.0%
CCTTCACGGTTGCGGGAAGG+AGG - chr8_3:56523986-56524005 Msa1296800:three_prime_UTR 65.0%
TTGGGCGTGAATGGGGTGGG+GGG + chr8_3:56525523-56525542 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 56523850 56527642 56523850 ID=Msa1296800;Name=Msa1296800
chr8_3 mRNA 56523850 56527642 56523850 ID=Msa1296800-mRNA-1;Parent=Msa1296800;Name=Msa1296800-mRNA-1;_AED=0.10;_eAED=0.10;_QI=175|0.8|0.66|1|1|1|6|195|586
chr8_3 exon 56523850 56524593 56523850 ID=Msa1296800-mRNA-1:exon:16223;Parent=Msa1296800-mRNA-1
chr8_3 exon 56525089 56525613 56525089 ID=Msa1296800-mRNA-1:exon:16222;Parent=Msa1296800-mRNA-1
chr8_3 exon 56526236 56526645 56526236 ID=Msa1296800-mRNA-1:exon:16221;Parent=Msa1296800-mRNA-1
chr8_3 exon 56526776 56526962 56526776 ID=Msa1296800-mRNA-1:exon:16220;Parent=Msa1296800-mRNA-1
chr8_3 exon 56527262 56527331 56527262 ID=Msa1296800-mRNA-1:exon:16219;Parent=Msa1296800-mRNA-1
chr8_3 exon 56527448 56527642 56527448 ID=Msa1296800-mRNA-1:exon:16218;Parent=Msa1296800-mRNA-1
chr8_3 five_prime_UTR 56527468 56527642 56527468 ID=Msa1296800-mRNA-1:five_prime_utr;Parent=Msa1296800-mRNA-1
chr8_3 CDS 56527448 56527467 56527448 ID=Msa1296800-mRNA-1:cds;Parent=Msa1296800-mRNA-1
chr8_3 CDS 56527262 56527331 56527262 ID=Msa1296800-mRNA-1:cds;Parent=Msa1296800-mRNA-1
chr8_3 CDS 56526776 56526962 56526776 ID=Msa1296800-mRNA-1:cds;Parent=Msa1296800-mRNA-1
chr8_3 CDS 56526236 56526645 56526236 ID=Msa1296800-mRNA-1:cds;Parent=Msa1296800-mRNA-1
chr8_3 CDS 56525089 56525613 56525089 ID=Msa1296800-mRNA-1:cds;Parent=Msa1296800-mRNA-1
chr8_3 CDS 56524045 56524593 56524045 ID=Msa1296800-mRNA-1:cds;Parent=Msa1296800-mRNA-1
chr8_3 three_prime_UTR 56523850 56524044 56523850 ID=Msa1296800-mRNA-1:three_prime_utr;Parent=Msa1296800-mRNA-1
Gene Sequence

>Msa1296800

ATGAAGAGAACAAGTGAATGGAATTACTCCCAGGAGATTCCAAGTGATGTCGCTATTCAAATTGGTGAAGCTTCCTATTCGTTACACAAGTTTCCATTAATTTCGAAAAGTGGACACATAAGGAAGCTCATTTCAGAATCTAGTGATGCTGTTGCTGATGTTCCATTAATTGAACTCATCGATGTCCCTGGTGGAGCAGAAGCATTTGAACTAGCAGCAAAGTTCTGTTACGGGATAAACTTCGAAATAAGTGTCGAAAACATCGCTATGCTTCGATATTATTCGGTCGGAAATTTGGTAGGAAGAACTGATTCTTACTTGAATGAAGTTGCACTAAAGAGCATGTCAGGGGCAATATCCATCTTACATACATCAGAAACTCTTCTTCCAATTGCAGAGAAAGCAAAATTAGTTAGCCGATGCATAGATGCAATAGCCTACATAGCTTCCAAGGAGAGTCAGTTTGGTTCATCTGGTAGAAGTGATGGTAGTAGCAATGAAAGAGTGATGAATTCTTCCACTGCTTCTCACCAGAGGCCAGCTGTTGATTGGTGGGCTGAAGATCTAACTGTTCTTAGAATTGACTTTTTTCAAAGAGTTCTAATTGCAATGATGGCTAGAGGGTTTAAAAATTGTGGTATTGGTCCTATTATAATGCTTTATTCACAGAAATCTCTGAGAGGTTTGGAGATATTTGGAAAGGGAAGGAAGGATATAGAACCACATGAAGAGCATGAGAAGAGACTTATTTTAGAGATACTAGTGAGCCTTATGCCAAGGGAGAAGAATGCAATATCTGTCAGCTTTCTTTCACTATGGCTTAAGGCAGCAATATATCTTGAGACAACTGTTGCTTGCAGGTTTGATTTGGAGAGAAGGATAGCCATGCAATTAGGACAGGCTGTGTTGGATGATCTTCTTTTTCCTTCATTTAGCGGCGACACATCGTTTGATGTAGAAACAGTGCAAAGAATCATGATGAATTACCTTGAATCTGAAGTTGAAAATCATTACAATGCAGATGATGAGTATTATTCTTCTCCACAAAGGGATATTTTTCGGGTTGGAAAGTTATTGGAGAGCTACCTTGCTGAAATAGCTACTGATAGAAATTTATCAGTTTCAAAGTTTATCTGTCTTGCTGAATTAATGCCTGAAAAATCAAGAACAACAGAAGATGGAATGTATAGAGCCGTAGACATCTATCTTAAGGCACATCCATTTGTAAGCGACACGGACAGAAAGAAAGTTTGCAGCATGATGGATTTCCAGAAGCTATCACGAGAGGCGCGAACCCACGCTGCACAAAACAACAGGCTTCCTGCCCAAAATGTGGCTCAAATTCTCTATTATGAACAGCAACGTCTTCGCGACAACATGGATGGCACTGGCAGCATAGGTTCAGATTCGCCTTCAACACCTGACAAGAGGAATGTATACTCATCCGAGCTTTATCCAGCTTCTAATGAGGTTTCCAAATTAAGAAGAGAAAATGAAGAACTGAAATTAGAGATAGTGAAACTTAAAATAAAAATAAAAGAGACGGAAAAATGTACAGTACTTGAATCACCTATCAATAGTCCTTTGTTAAATGCATCATCACCTTCAGCTGATAAGCCTCCTTTGCCTAGAAAGTCATTCCTAAACTCAGTTTCAAGAAAACTTGGCCGTCTTTCTCCTTTTCAACGTGCTCATCCTGTCATAGCACGTCCCAAAGATCGCATACAACTAGACAAGATTCGACGCTACTCCATATCCTGA
Protein sequence

>Msa1296800

MKRTSEWNYSQEIPSDVAIQIGEASYSLHKFPLISKSGHIRKLISESSDAVADVPLIELIDVPGGAEAFELAAKFCYGINFEISVENIAMLRYYSVGNLVGRTDSYLNEVALKSMSGAISILHTSETLLPIAEKAKLVSRCIDAIAYIASKESQFGSSGRSDGSSNERVMNSSTASHQRPAVDWWAEDLTVLRIDFFQRVLIAMMARGFKNCGIGPIIMLYSQKSLRGLEIFGKGRKDIEPHEEHEKRLILEILVSLMPREKNAISVSFLSLWLKAAIYLETTVACRFDLERRIAMQLGQAVLDDLLFPSFSGDTSFDVETVQRIMMNYLESEVENHYNADDEYYSSPQRDIFRVGKLLESYLAEIATDRNLSVSKFICLAELMPEKSRTTEDGMYRAVDIYLKAHPFVSDTDRKKVCSMMDFQKLSREARTHAAQNNRLPAQNVAQILYYEQQRLRDNMDGTGSIGSDSPSTPDKRNVYSSELYPASNEVSKLRRENEELKLEIVKLKIKIKETEKCTVLESPINSPLLNASSPSADKPPLPRKSFLNSVSRKLGRLSPFQRAHPVIARPKDRIQLDKIRRYSIS*