AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0876580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0876580 MtrunA17_Chr6g0457791 94.167 120 6 1 12 131 12 130 4.00e-72 211
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0876580 AT5G16160.1 39.416 137 64 5 1 131 10 133 4.87e-22 85.1

Find 31 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACGCCTTTGGGATTGAAAT+TGG 0.166973 6_1:-14850581 None:intergenic
GTCAAAATGTTTAGACAAAT+AGG 0.276462 6_1:+14853539 Msa0876580:three_prime_UTR
ATTAATATAAACAGATAAAA+AGG 0.286634 6_1:-14853599 None:intergenic
TTTCCTCTCCCACCTCTCCT+TGG 0.409307 6_1:-14853369 None:intergenic
AAAGAAGCCAAAATTGCATT+GGG 0.411282 6_1:+14852298 Msa0876580:CDS
TTGATCTTGAGAAACGCCTT+TGG 0.419277 6_1:-14850593 None:intergenic
ACGCCTTTGGGATTGAAATT+GGG 0.423486 6_1:-14850580 None:intergenic
GAGAATACTCACACGAAACT+TGG 0.428653 6_1:-14850620 None:intergenic
TGATCTTGAGAAACGCCTTT+GGG 0.440602 6_1:-14850592 None:intergenic
TTGAAATTGGGTTGCAAGCA+AGG 0.449157 6_1:-14850568 None:intergenic
CAAAGAAGCCAAAATTGCAT+TGG 0.485599 6_1:+14852297 Msa0876580:CDS
AGCTTTCACAATTGTTCAAG+AGG 0.501859 6_1:-14852232 None:intergenic
GATTCCTCATTGCAGTTCCA+TGG 0.512300 6_1:-14853415 None:intergenic
TTTGTAAATTAGTATTATTG+AGG 0.515463 6_1:+14853459 Msa0876580:three_prime_UTR
GGCTTGACACCAAGGAGAGG+TGG 0.527330 6_1:+14853360 Msa0876580:intron
GTATTATTGAGGATAGTTCA+AGG 0.530260 6_1:+14853470 Msa0876580:three_prime_UTR
ACACCAAGGAGAGGTGGGAG+AGG 0.533494 6_1:+14853366 Msa0876580:CDS
TATTATTGAGGATAGTTCAA+GGG 0.540644 6_1:+14853471 Msa0876580:three_prime_UTR
AGCAAGAACAGTGGAGCTCA+AGG 0.552731 6_1:+14852182 Msa0876580:CDS
GTGATATGATATCTACATGT+TGG 0.574074 6_1:-14853393 None:intergenic
CAACCCAATTTCAATCCCAA+AGG 0.599125 6_1:+14850577 Msa0876580:CDS
GCTTGACACCAAGGAGAGGT+GGG 0.599728 6_1:+14853361 Msa0876580:CDS
ATTATTGAGGATAGTTCAAG+GGG 0.608379 6_1:+14853472 Msa0876580:three_prime_UTR
AGAAGCCAAAATTGCATTGG+GGG 0.610391 6_1:+14852300 Msa0876580:CDS
CATTTGCAGGCTTGACACCA+AGG 0.630484 6_1:+14853352 Msa0876580:intron
GCAGGCTTGACACCAAGGAG+AGG 0.644830 6_1:+14853357 Msa0876580:intron
GATGTATATAGCAAGAACAG+TGG 0.667111 6_1:+14852173 Msa0876580:CDS
AAGAAGCCAAAATTGCATTG+GGG 0.668833 6_1:+14852299 Msa0876580:CDS
ATCACCATGGAACTGCAATG+AGG 0.674885 6_1:+14853411 Msa0876580:three_prime_UTR
AAGTTTAAGACAAAACCCAA+AGG 0.697268 6_1:+14852013 Msa0876580:CDS
ATGTAGATATCATATCACCA+TGG 0.717377 6_1:+14853398 Msa0876580:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAAAAAATAGAAGA+TGG + chr6_1:14850498-14850517 Msa0876580:exon 10.0%
!!! TTTTCAAAAAAAACAAAAAA+GGG - chr6_1:14850706-14850725 None:intergenic 10.0%
!!! TTTTTCAAAAAAAACAAAAA+AGG - chr6_1:14850707-14850726 None:intergenic 10.0%
!!! AAATTATTGAAGAAATTTTT+TGG + chr6_1:14850766-14850785 Msa0876580:intron 10.0%
!!! TCTTATTTGTTTTTAAATTT+TGG + chr6_1:14852056-14852075 Msa0876580:intron 10.0%
!! ATTAATATAAACAGATAAAA+AGG - chr6_1:14853602-14853621 None:intergenic 10.0%
!! TTTCAAAAAAAACAAAAAAG+GGG - chr6_1:14850705-14850724 None:intergenic 15.0%
!! AAAATTAAAATTAAGGCAAA+GGG + chr6_1:14850869-14850888 Msa0876580:intron 15.0%
!!! GTTTGAATTTATTTTAATTC+TGG - chr6_1:14851132-14851151 None:intergenic 15.0%
!!! TTTTATGTTATTCATGTATA+TGG + chr6_1:14853271-14853290 Msa0876580:intron 15.0%
!! TTTGTAAATTAGTATTATTG+AGG + chr6_1:14853459-14853478 Msa0876580:three_prime_UTR 15.0%
!!! TTTTGACAATAATACTAAAA+AGG - chr6_1:14853513-14853532 None:intergenic 15.0%
!! TTAAATTAAACAAAAACTCT+TGG - chr6_1:14853568-14853587 None:intergenic 15.0%
!! AAAAAAATAGAAGATGGAAA+AGG + chr6_1:14850504-14850523 Msa0876580:exon 20.0%
!!! TTATTGAAGAAATTTTTTGG+TGG + chr6_1:14850769-14850788 Msa0876580:intron 20.0%
!!! TATTGAAGAAATTTTTTGGT+GGG + chr6_1:14850770-14850789 Msa0876580:intron 20.0%
!! CAAAATTAAAATTAAGGCAA+AGG + chr6_1:14850868-14850887 Msa0876580:intron 20.0%
!! TAAGTTGTTTATCCAAAATA+TGG - chr6_1:14851049-14851068 None:intergenic 20.0%
!!! AATTATTCTAGAAAGCTATA+AGG + chr6_1:14851184-14851203 Msa0876580:intron 20.0%
!!! TATAAGGTGAAAATAACTTT+TGG + chr6_1:14851200-14851219 Msa0876580:intron 20.0%
!! ACTATCAACAACTATATAAA+TGG - chr6_1:14851663-14851682 None:intergenic 20.0%
!! ATATTGTAGAATCATCATAT+TGG - chr6_1:14851686-14851705 None:intergenic 20.0%
!!! TTTTTTTTTTTTTTGAGGGA+AGG + chr6_1:14851784-14851803 Msa0876580:intron 20.0%
!! AAAAAACAAAAAGAACCTTT+GGG - chr6_1:14852031-14852050 None:intergenic 20.0%
!! ATCAGAAAATTATATATCCA+CGG + chr6_1:14852409-14852428 Msa0876580:intron 20.0%
!! GATTACTATAAACACATTTA+AGG - chr6_1:14853090-14853109 None:intergenic 20.0%
!!! TGATTTTCTCAAATTATTAG+CGG - chr6_1:14853153-14853172 None:intergenic 20.0%
!!! AACATTTTGACAAAATTTGA+TGG - chr6_1:14853440-14853459 None:intergenic 20.0%
! ATAAGAACTTACAAGTTACA+TGG - chr6_1:14851393-14851412 None:intergenic 25.0%
! CTCAAACTTAATGTTTGTTT+GGG - chr6_1:14851443-14851462 None:intergenic 25.0%
! ACTCAAACTTAATGTTTGTT+TGG - chr6_1:14851444-14851463 None:intergenic 25.0%
! CTAAATAATCAGCGTATATT+TGG + chr6_1:14851498-14851517 Msa0876580:intron 25.0%
!! GGAATGCTAAATCTATATTT+TGG + chr6_1:14851558-14851577 Msa0876580:intron 25.0%
! TGATGATTCTACAATATGTT+AGG + chr6_1:14851689-14851708 Msa0876580:intron 25.0%
! GATGATTCTACAATATGTTA+GGG + chr6_1:14851690-14851709 Msa0876580:intron 25.0%
! GGAAGGAGATTATTAAAATT+AGG + chr6_1:14851801-14851820 Msa0876580:intron 25.0%
! TAAAACATGTTGAATTCAAG+TGG - chr6_1:14851900-14851919 None:intergenic 25.0%
! CAAAAAACAAAAAGAACCTT+TGG - chr6_1:14852032-14852051 None:intergenic 25.0%
!!! TATTTTGTGTGTTCTGAATT+GGG + chr6_1:14852113-14852132 Msa0876580:intron 25.0%
! TCTAACTCTACTTTAAATGA+AGG + chr6_1:14852329-14852348 Msa0876580:intron 25.0%
! TTTATGAGTAAATCATGTGA+AGG - chr6_1:14852510-14852529 None:intergenic 25.0%
! TTCTGTGTAATTATATGTGT+CGG + chr6_1:14853178-14853197 Msa0876580:intron 25.0%
! ATATTACTATCTATGAAGCA+CGG - chr6_1:14853246-14853265 None:intergenic 25.0%
! TATTATTGAGGATAGTTCAA+GGG + chr6_1:14853471-14853490 Msa0876580:three_prime_UTR 25.0%
! GTCAAAATGTTTAGACAAAT+AGG + chr6_1:14853539-14853558 Msa0876580:three_prime_UTR 25.0%
! TAAACAGATAAAAAGGAAGA+AGG - chr6_1:14853595-14853614 None:intergenic 25.0%
AAAGGGGAAAAATTGCAATA+TGG - chr6_1:14850689-14850708 None:intergenic 30.0%
! TTAAGTTGTTTATCCAAGCA+GGG - chr6_1:14850802-14850821 None:intergenic 30.0%
! ATTAAGTTGTTTATCCAAGC+AGG - chr6_1:14850803-14850822 None:intergenic 30.0%
CTTATTTCAATAAGCTCTCT+AGG - chr6_1:14850909-14850928 None:intergenic 30.0%
! TAAACACCAACACTTTTCTT+CGG - chr6_1:14851023-14851042 None:intergenic 30.0%
!! AAGAAAAGTGTTGGTGTTTA+AGG + chr6_1:14851023-14851042 Msa0876580:intron 30.0%
TTCCATAAGCTCTTCTAAAT+AGG + chr6_1:14851239-14851258 Msa0876580:intron 30.0%
ATAATCAGCGTATATTTGGA+TGG + chr6_1:14851502-14851521 Msa0876580:intron 30.0%
CTTCCTAATTAGAAAAGATG+CGG + chr6_1:14851629-14851648 Msa0876580:intron 30.0%
CTTACCAAAAACAGATTAGT+CGG - chr6_1:14851756-14851775 None:intergenic 30.0%
TTGAATTCAAGTGGTTAATG+TGG - chr6_1:14851891-14851910 None:intergenic 30.0%
ATGTTCACTCAATGTTAACA+GGG - chr6_1:14851942-14851961 None:intergenic 30.0%
AATGTTCACTCAATGTTAAC+AGG - chr6_1:14851943-14851962 None:intergenic 30.0%
GTTAACATTGAGTGAACATT+TGG + chr6_1:14851943-14851962 Msa0876580:intron 30.0%
! AAGTTTAAGACAAAACCCAA+AGG + chr6_1:14852013-14852032 Msa0876580:CDS 30.0%
!! GTATTTTGTGTGTTCTGAAT+TGG + chr6_1:14852112-14852131 Msa0876580:intron 30.0%
TTCGAAAAATGAAGACTCAA+AGG + chr6_1:14852259-14852278 Msa0876580:CDS 30.0%
TCGAAAAATGAAGACTCAAA+GGG + chr6_1:14852260-14852279 Msa0876580:CDS 30.0%
AAAGAAGCCAAAATTGCATT+GGG + chr6_1:14852298-14852317 Msa0876580:CDS 30.0%
! AACTGTTAAGTTTTTATCCG+TGG - chr6_1:14852429-14852448 None:intergenic 30.0%
TGCAACATATTGTCAAATAG+CGG + chr6_1:14852688-14852707 Msa0876580:intron 30.0%
CGATTATGGATCACATAAAA+CGG - chr6_1:14852742-14852761 None:intergenic 30.0%
TGAGCTTAGGATATTTACAT+GGG + chr6_1:14852791-14852810 Msa0876580:intron 30.0%
TTACATGGGATTTCAGTAAA+TGG + chr6_1:14852805-14852824 Msa0876580:intron 30.0%
!! AAATGGAAGTATCAGAAATG+AGG + chr6_1:14852822-14852841 Msa0876580:intron 30.0%
GTGATATGATATCTACATGT+TGG - chr6_1:14853396-14853415 None:intergenic 30.0%
ATGTAGATATCATATCACCA+TGG + chr6_1:14853398-14853417 Msa0876580:exon 30.0%
GTATTATTGAGGATAGTTCA+AGG + chr6_1:14853470-14853489 Msa0876580:three_prime_UTR 30.0%
ATTATTGAGGATAGTTCAAG+GGG + chr6_1:14853472-14853491 Msa0876580:three_prime_UTR 30.0%
TAAGCACTTATGAGACAGTT+TGG - chr6_1:14850980-14850999 None:intergenic 35.0%
!! TGGTGTTTAAGGCCATATTT+TGG + chr6_1:14851034-14851053 Msa0876580:intron 35.0%
AGCCTATTTAGAAGAGCTTA+TGG - chr6_1:14851244-14851263 None:intergenic 35.0%
! ACACCGCATCTTTTCTAATT+AGG - chr6_1:14851635-14851654 None:intergenic 35.0%
!!! CGACTAATCTGTTTTTGGTA+AGG + chr6_1:14851754-14851773 Msa0876580:intron 35.0%
TTATGAATTATTCCACCACC+CGG + chr6_1:14851824-14851843 Msa0876580:intron 35.0%
GATGTATATAGCAAGAACAG+TGG + chr6_1:14852173-14852192 Msa0876580:CDS 35.0%
AGCTTTCACAATTGTTCAAG+AGG - chr6_1:14852235-14852254 None:intergenic 35.0%
AAAAATGAAGACTCAAAGGG+TGG + chr6_1:14852263-14852282 Msa0876580:CDS 35.0%
CAAAGAAGCCAAAATTGCAT+TGG + chr6_1:14852297-14852316 Msa0876580:CDS 35.0%
AAGAAGCCAAAATTGCATTG+GGG + chr6_1:14852299-14852318 Msa0876580:CDS 35.0%
! AAGTTGCCTTTTACACTCTT+CGG + chr6_1:14852355-14852374 Msa0876580:intron 35.0%
ACGATAATGATCACTGCAAA+CGG + chr6_1:14852539-14852558 Msa0876580:intron 35.0%
ATGCTACACTATAGTATCAC+CGG - chr6_1:14852631-14852650 None:intergenic 35.0%
GTGAGCTTAGGATATTTACA+TGG + chr6_1:14852790-14852809 Msa0876580:intron 35.0%
TCTTAGAACTAGAATTGCTG+CGG - chr6_1:14853010-14853029 None:intergenic 35.0%
!! TAGTTCTAAGAAATAGAGCG+CGG + chr6_1:14853019-14853038 Msa0876580:intron 35.0%
!! TGTTTGTTGTGAACATTTGC+AGG + chr6_1:14853339-14853358 Msa0876580:intron 35.0%
! TTGAAATTGGGTTGCAAGCA+AGG - chr6_1:14850571-14850590 None:intergenic 40.0%
CAACCCAATTTCAATCCCAA+AGG + chr6_1:14850577-14850596 Msa0876580:CDS 40.0%
!! ACGCCTTTGGGATTGAAATT+GGG - chr6_1:14850583-14850602 None:intergenic 40.0%
!! AACGCCTTTGGGATTGAAAT+TGG - chr6_1:14850584-14850603 None:intergenic 40.0%
TGATCTTGAGAAACGCCTTT+GGG - chr6_1:14850595-14850614 None:intergenic 40.0%
TTGATCTTGAGAAACGCCTT+TGG - chr6_1:14850596-14850615 None:intergenic 40.0%
GAGAATACTCACACGAAACT+TGG - chr6_1:14850623-14850642 None:intergenic 40.0%
TTCGGAAAGAGTTCATCTAC+TGG - chr6_1:14851005-14851024 None:intergenic 40.0%
! CTCTTTCCGAAGAAAAGTGT+TGG + chr6_1:14851014-14851033 Msa0876580:intron 40.0%
GAAAGATCTAGCGATAAACG+AGG + chr6_1:14851321-14851340 Msa0876580:intron 40.0%
! ATTTGGATGGAGCTTTTCAG+AGG + chr6_1:14851515-14851534 Msa0876580:intron 40.0%
! TGGAGCTTTTCAGAGGATTA+TGG + chr6_1:14851522-14851541 Msa0876580:intron 40.0%
! AGCTTTTCAGAGGATTATGG+AGG + chr6_1:14851525-14851544 Msa0876580:intron 40.0%
! GCTTTTCAGAGGATTATGGA+GGG + chr6_1:14851526-14851545 Msa0876580:intron 40.0%
! CTTTTCAGAGGATTATGGAG+GGG + chr6_1:14851527-14851546 Msa0876580:intron 40.0%
!! TCTGCCGACTAATCTGTTTT+TGG + chr6_1:14851749-14851768 Msa0876580:intron 40.0%
TGTAAAGGAACAAGCTTGGT+TGG - chr6_1:14851864-14851883 None:intergenic 40.0%
! ACCAAGCTTGTTCCTTTACA+TGG + chr6_1:14851864-14851883 Msa0876580:intron 40.0%
TCCATGTAAAGGAACAAGCT+TGG - chr6_1:14851868-14851887 None:intergenic 40.0%
GGTTAATGTGGTCCATGTAA+AGG - chr6_1:14851879-14851898 None:intergenic 40.0%
GAGTGAACATTTGGATCTGT+AGG + chr6_1:14851952-14851971 Msa0876580:intron 40.0%
AGAAGCCAAAATTGCATTGG+GGG + chr6_1:14852300-14852319 Msa0876580:CDS 40.0%
! CTATACCCCCAATGCAATTT+TGG - chr6_1:14852308-14852327 None:intergenic 40.0%
! TTCCTTCCGAAGAGTGTAAA+AGG - chr6_1:14852364-14852383 None:intergenic 40.0%
TACACTCTTCGGAAGGAATT+TGG + chr6_1:14852366-14852385 Msa0876580:intron 40.0%
ATCACTGCAAACGGAACTTT+GGG + chr6_1:14852548-14852567 Msa0876580:intron 40.0%
CTATTTGACAACACTAGCCA+GGG - chr6_1:14852603-14852622 None:intergenic 40.0%
ACTATTTGACAACACTAGCC+AGG - chr6_1:14852604-14852623 None:intergenic 40.0%
TGGCTAGTGTTGTCAAATAG+TGG + chr6_1:14852603-14852622 Msa0876580:intron 40.0%
CGCATATCGCAGAACAAAAA+TGG - chr6_1:14852662-14852681 None:intergenic 40.0%
TGATCCATAATCGACAACAC+TGG + chr6_1:14852749-14852768 Msa0876580:intron 40.0%
CTAGCGATAAACGAGGTGTA+TGG + chr6_1:14851328-14851347 Msa0876580:intron 45.0%
! GATTATGGAGGGGAGAGTTT+TGG + chr6_1:14851537-14851556 Msa0876580:intron 45.0%
! CCATTTTGTAAGGTCACGAG+GGG - chr6_1:14851717-14851736 None:intergenic 45.0%
! CCCATTTTGTAAGGTCACGA+GGG - chr6_1:14851718-14851737 None:intergenic 45.0%
CCCTCGTGACCTTACAAAAT+GGG + chr6_1:14851715-14851734 Msa0876580:intron 45.0%
TGACCTTACAAAATGGGCCA+TGG + chr6_1:14851721-14851740 Msa0876580:intron 45.0%
! AGTCCATGGCCCATTTTGTA+AGG - chr6_1:14851727-14851746 None:intergenic 45.0%
TGCAGATGACGCCAAAAAGA+AGG + chr6_1:14852139-14852158 Msa0876580:intron 45.0%
! ATTGCCTCGTGCCTTCTTTT+TGG - chr6_1:14852153-14852172 None:intergenic 45.0%
! TGCCTTTTACACTCTTCGGA+AGG + chr6_1:14852359-14852378 Msa0876580:intron 45.0%
GATCACTGCAAACGGAACTT+TGG + chr6_1:14852547-14852566 Msa0876580:intron 45.0%
TCACTGCAAACGGAACTTTG+GGG + chr6_1:14852549-14852568 Msa0876580:intron 45.0%
AGTGAAATTTCGCGTTTCCC+TGG + chr6_1:14852583-14852602 Msa0876580:intron 45.0%
GTGTTGTCAAATAGTGGCTC+CGG + chr6_1:14852609-14852628 Msa0876580:intron 45.0%
AAATAGCGGCTGTAGCATAG+CGG + chr6_1:14852702-14852721 Msa0876580:intron 45.0%
! AGGACCAGTGTTGTCGATTA+TGG - chr6_1:14852756-14852775 None:intergenic 45.0%
CCTAAGCTCACTCTACTAGT+GGG - chr6_1:14852781-14852800 None:intergenic 45.0%
TCCTAAGCTCACTCTACTAG+TGG - chr6_1:14852782-14852801 None:intergenic 45.0%
!!! CGATCCTGATTTTAGCTGCA+CGG + chr6_1:14853060-14853079 Msa0876580:intron 45.0%
TGATCCGTGCAGCTAAAATC+AGG - chr6_1:14853067-14853086 None:intergenic 45.0%
! TATTAGCGGTGTCAACGAGT+CGG - chr6_1:14853139-14853158 None:intergenic 45.0%
ATCACCATGGAACTGCAATG+AGG + chr6_1:14853411-14853430 Msa0876580:three_prime_UTR 45.0%
GATTCCTCATTGCAGTTCCA+TGG - chr6_1:14853418-14853437 None:intergenic 45.0%
!! TTATATCAAAATTAAAATTA+AGG + chr6_1:14850862-14850881 Msa0876580:intron 5.0%
!!! ATTATTTTTTTTTTTTTTTG+AGG + chr6_1:14851779-14851798 Msa0876580:intron 5.0%
!!! TTATTTTTTTTTTTTTTTGA+GGG + chr6_1:14851780-14851799 Msa0876580:intron 5.0%
CCCCTCGTGACCTTACAAAA+TGG + chr6_1:14851714-14851733 Msa0876580:intron 50.0%
! GCCCATTTTGTAAGGTCACG+AGG - chr6_1:14851719-14851738 None:intergenic 50.0%
! TTAGTCGGCAGACTAGTCCA+TGG - chr6_1:14851741-14851760 None:intergenic 50.0%
! TTGGTAACCGAGTTCGATCC+GGG - chr6_1:14851845-14851864 None:intergenic 50.0%
!! GTTGGTAACCGAGTTCGATC+CGG - chr6_1:14851846-14851865 None:intergenic 50.0%
AGCAAGAACAGTGGAGCTCA+AGG + chr6_1:14852182-14852201 Msa0876580:CDS 50.0%
CCCACTAGTAGAGTGAGCTT+AGG + chr6_1:14852778-14852797 Msa0876580:intron 50.0%
CATTTGCAGGCTTGACACCA+AGG + chr6_1:14853352-14853371 Msa0876580:intron 50.0%
!! TGGTGGGTTAAGACCCTGCT+TGG + chr6_1:14850786-14850805 Msa0876580:intron 55.0%
! GACGCCAAAAAGAAGGCACG+AGG + chr6_1:14852146-14852165 Msa0876580:CDS 55.0%
! GCTCACTCTACTAGTGGGTC+AGG - chr6_1:14852776-14852795 None:intergenic 55.0%
GATTAGGCGTGTCCCAGTGT+CGG - chr6_1:14853213-14853232 None:intergenic 55.0%
TATGAAGCACGGACGCTCCT+CGG - chr6_1:14853235-14853254 None:intergenic 55.0%
GCTTGACACCAAGGAGAGGT+GGG + chr6_1:14853361-14853380 Msa0876580:CDS 55.0%
TTTCCTCTCCCACCTCTCCT+TGG - chr6_1:14853372-14853391 None:intergenic 55.0%
TCCACCACCCGGATCGAACT+CGG + chr6_1:14851835-14851854 Msa0876580:intron 60.0%
GTAACCGAGTTCGATCCGGG+TGG - chr6_1:14851842-14851861 None:intergenic 60.0%
TCGGCTATCGTGTCCGACAC+TGG + chr6_1:14853197-14853216 Msa0876580:intron 60.0%
CGGCTATCGTGTCCGACACT+GGG + chr6_1:14853198-14853217 Msa0876580:intron 60.0%
ACTGGGACACGCCTAATCCG+AGG + chr6_1:14853215-14853234 Msa0876580:intron 60.0%
GCAGGCTTGACACCAAGGAG+AGG + chr6_1:14853357-14853376 Msa0876580:intron 60.0%
GGCTTGACACCAAGGAGAGG+TGG + chr6_1:14853360-14853379 Msa0876580:intron 60.0%
ACACCAAGGAGAGGTGGGAG+AGG + chr6_1:14853366-14853385 Msa0876580:CDS 60.0%
ACCGAGTTCGATCCGGGTGG+TGG - chr6_1:14851839-14851858 None:intergenic 65.0%
GCACGGACGCTCCTCGGATT+AGG - chr6_1:14853229-14853248 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 14850491 14853634 14850491 ID=Msa0876580;Name=Msa0876580
chr6_1 mRNA 14850491 14853634 14850491 ID=Msa0876580-mRNA-1;Parent=Msa0876580;Name=Msa0876580-mRNA-1;_AED=0.01;_eAED=0.01;_QI=26|1|1|1|1|1|4|231|131
chr6_1 exon 14850491 14850630 14850491 ID=Msa0876580-mRNA-1:exon:4237;Parent=Msa0876580-mRNA-1
chr6_1 exon 14851974 14852034 14851974 ID=Msa0876580-mRNA-1:exon:4238;Parent=Msa0876580-mRNA-1
chr6_1 exon 14852144 14852321 14852144 ID=Msa0876580-mRNA-1:exon:4239;Parent=Msa0876580-mRNA-1
chr6_1 exon 14853361 14853634 14853361 ID=Msa0876580-mRNA-1:exon:4240;Parent=Msa0876580-mRNA-1
chr6_1 five_prime_UTR 14850491 14850516 14850491 ID=Msa0876580-mRNA-1:five_prime_utr;Parent=Msa0876580-mRNA-1
chr6_1 CDS 14850517 14850630 14850517 ID=Msa0876580-mRNA-1:cds;Parent=Msa0876580-mRNA-1
chr6_1 CDS 14851974 14852034 14851974 ID=Msa0876580-mRNA-1:cds;Parent=Msa0876580-mRNA-1
chr6_1 CDS 14852144 14852321 14852144 ID=Msa0876580-mRNA-1:cds;Parent=Msa0876580-mRNA-1
chr6_1 CDS 14853361 14853403 14853361 ID=Msa0876580-mRNA-1:cds;Parent=Msa0876580-mRNA-1
chr6_1 three_prime_UTR 14853404 14853634 14853404 ID=Msa0876580-mRNA-1:three_prime_utr;Parent=Msa0876580-mRNA-1
Gene Sequence

>Msa0876580

ATGGAAAAGGAAGAAGAAGATCGAAGAAGAGAAGCAGCAATTTCATCAACACCTTGCTTGCAACCCAATTTCAATCCCAAAGGCGTTTCTCAAGATCAACTCTCCAAGTTTCGTGAACTGCACAGAAAGCGATTACAGCTAAAGTCAAAATCAAAGTTTAAGACAAAACCCAAAGATGACGCCAAAAAGAAGGCACGAGGCAATGATGTATATAGCAAGAACAGTGGAGCTCAAGGATTCAAAGTTGATAACAAAGAACAAAGCCTCTTGAACAATTGTGAAAGCTTTGATTCGAAAAATGAAGACTCAAAGGGTGGTGTATTTGCATCAAAGAAGCCAAAATTGCATTGGGGGCTTGACACCAAGGAGAGGTGGGAGAGGAAATCCAACATGTAG

Protein sequence

>Msa0876580

MEKEEEDRRREAAISSTPCLQPNFNPKGVSQDQLSKFRELHRKRLQLKSKSKFKTKPKDDAKKKARGNDVYSKNSGAQGFKVDNKEQSLLNNCESFDSKNEDSKGGVFASKKPKLHWGLDTKERWERKSNM*