AlfalfaGEDB | Msa1221120

M. sativa cultivar zhongmu-4 / Msa1221120

KEGG: K10739
GO: GO:0000228 GO:0000278 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005662 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0018130 GO:0019438 GO:0022402 GO:0030894 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0032993 GO:0033260 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0035861 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044786 GO:0046483 GO:0050896 GO:0051716 GO:0070013 GO:0071704 GO:0090304 GO:0090734 GO:1901360 GO:1901362 GO:1901576 GO:1902295 GO:1902318 GO:1902969 GO:1902981 GO:1903047
PFAM: PF01336.28

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1221120	XP_003610102.1	87.681	276	32	2	2	276	4	278	6.39e-177	498

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1221120	sp\|Q8LFJ8\|RFA2B_ARATH	44.737	266	140	3	4	266	6	267	3.42e-75	233

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0015570	Msa1221120	0.847059	1.469235e-59	-8.615850e-47
Msa0027280	Msa1221120	0.801359	9.343744e-49	-8.615850e-47
Msa0035380	Msa1221120	0.806699	7.245084e-50	-8.615850e-47
Msa0042640	Msa1221120	0.832251	1.051515e-55	-8.615850e-47
Msa0062340	Msa1221120	0.800084	1.701214e-48	-8.615850e-47
Msa0067060	Msa1221120	0.826726	2.316005e-54	-8.615850e-47
Msa0067380	Msa1221120	0.800818	1.205954e-48	-8.615850e-47
Msa0075530	Msa1221120	0.822393	2.426895e-53	-8.615850e-47
Msa0078130	Msa1221120	0.801423	9.069177e-49	-8.615850e-47
Msa0094570	Msa1221120	0.981659	3.952668e-153	-8.615850e-47

Showing 1 to 10 of 122 entries

Previous1 2 3 4 5…13Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1221120	MtrunA17_Chr4g0072301	87.681	276	32	2	2	276	4	278	0.0	498
Msa1221120	MtrunA17_Chr1g0148131	39.781	274	157	5	2	273	5	272	5.08e-66	207

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1221120	AT3G02920.1	44.737	266	140	3	4	266	6	267	3.48e-76	233
Msa1221120	AT2G24490.1	41.606	274	153	5	2	271	5	275	1.03e-68	214
Msa1221120	AT2G24490.2	41.606	274	153	5	2	271	5	275	1.03e-68	214
Msa1221120	AT3G02920.3	46.875	224	112	3	4	224	6	225	4.42e-67	208
Msa1221120	AT3G02920.2	46.875	224	112	3	4	224	6	225	4.42e-67	208

Showing 1 to 5 of 5 entries

Previous1Next

Find 88 sgRNAs with CRISPR-Local

Find 288 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACACCGTCAATAGTAAGAC+CGG	0.588874	8_1:-84604612	None:intergenic
AACCTTGGAGGGAGTGAGAG+AGG	0.538834	8_1:-84604373	None:intergenic
AACGCCGCTTTCTCCGGCGG+CGG	0.487082	8_1:+84604315	Msa1221120:CDS
AATCTCATTGAAGTCAGTAA+CGG	0.599498	8_1:-84605981	None:intergenic
AATGCACTCAAGGAAATGGC+TGG	0.568941	8_1:-84606005	None:intergenic
AATGCATCTGTTGTGTAAAC+GGG	0.411134	8_1:+84608214	Msa1221120:three_prime_UTR
ACCTGCTGATGCAATGGCAG+TGG	0.566074	8_1:+84604935	Msa1221120:CDS
ACTTACTTGATTTGGTGGAA+TGG	0.471859	8_1:-84606939	None:intergenic
AGAACCGGTCTTACTATTGA+CGG	0.593890	8_1:+84604608	Msa1221120:CDS
AGAACTGAGAAGAACCTTGG+AGG	0.589879	8_1:-84604385	None:intergenic

Showing 1 to 10 of 88 entries

Previous1 2 3 4 5…9Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TAACACAGAATCAAAAATCG+GGG	+	chr8_1:84604177-84604196	Msa1221120:five_prime_UTR	30.0%
TCGAAATTTCTGTTCAATCA+CGG	+	chr8_1:84604262-84604281	Msa1221120:five_prime_UTR	30.0%
CTATTGTGAATTACGATTTG+TGG	+	chr8_1:84604665-84604684	Msa1221120:intron	30.0%
TACTTGGTTAATGTCTAATC+AGG	+	chr8_1:84605027-84605046	Msa1221120:intron	30.0%
CTTTCTATGTAAGTAAGGAT+AGG	+	chr8_1:84605057-84605076	Msa1221120:intron	30.0%
ATGTAAGTAAGGATAGGAAT+AGG	+	chr8_1:84605063-84605082	Msa1221120:intron	30.0%
GATATTATAATCACCCTTGT+CGG	+	chr8_1:84605260-84605279	Msa1221120:intron	30.0%
AGAAATATGTGATTGCATTG+AGG	+	chr8_1:84605464-84605483	Msa1221120:intron	30.0%
TGCCATTCAAAATAAAAGGA+GGG	-	chr8_1:84605513-84605532	None:intergenic	30.0%
TTGCCATTCAAAATAAAAGG+AGG	-	chr8_1:84605514-84605533	None:intergenic	30.0%

Showing 1 to 10 of 288 entries

Previous1 2 3 4 5…29Next

Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	84604154	84608323	84604154	ID=Msa1221120;Name=Msa1221120
chr8_1	mRNA	84604154	84608323	84604154	ID=Msa1221120-mRNA-1;Parent=Msa1221120;Name=Msa1221120-mRNA-1;_AED=0.16;_eAED=0.16;_QI=143\|1\|1\|1\|1\|1\|10\|324\|276
chr8_1	exon	84604154	84604392	84604154	ID=Msa1221120-mRNA-1:exon:30371;Parent=Msa1221120-mRNA-1
chr8_1	exon	84604536	84604646	84604536	ID=Msa1221120-mRNA-1:exon:30372;Parent=Msa1221120-mRNA-1
chr8_1	exon	84604721	84604818	84604721	ID=Msa1221120-mRNA-1:exon:30373;Parent=Msa1221120-mRNA-1
chr8_1	exon	84604926	84604967	84604926	ID=Msa1221120-mRNA-1:exon:30374;Parent=Msa1221120-mRNA-1
chr8_1	exon	84605733	84605810	84605733	ID=Msa1221120-mRNA-1:exon:30375;Parent=Msa1221120-mRNA-1
chr8_1	exon	84605979	84606057	84605979	ID=Msa1221120-mRNA-1:exon:30376;Parent=Msa1221120-mRNA-1
chr8_1	exon	84606857	84606955	84606857	ID=Msa1221120-mRNA-1:exon:30377;Parent=Msa1221120-mRNA-1
chr8_1	exon	84607031	84607107	84607031	ID=Msa1221120-mRNA-1:exon:30378;Parent=Msa1221120-mRNA-1
chr8_1	exon	84607747	84607815	84607747	ID=Msa1221120-mRNA-1:exon:30379;Parent=Msa1221120-mRNA-1
chr8_1	exon	84607918	84608323	84607918	ID=Msa1221120-mRNA-1:exon:30380;Parent=Msa1221120-mRNA-1
chr8_1	five_prime_UTR	84604154	84604296	84604154	ID=Msa1221120-mRNA-1:five_prime_utr;Parent=Msa1221120-mRNA-1
chr8_1	CDS	84604297	84604392	84604297	ID=Msa1221120-mRNA-1:cds;Parent=Msa1221120-mRNA-1
chr8_1	CDS	84604536	84604646	84604536	ID=Msa1221120-mRNA-1:cds;Parent=Msa1221120-mRNA-1
chr8_1	CDS	84604721	84604818	84604721	ID=Msa1221120-mRNA-1:cds;Parent=Msa1221120-mRNA-1
chr8_1	CDS	84604926	84604967	84604926	ID=Msa1221120-mRNA-1:cds;Parent=Msa1221120-mRNA-1
chr8_1	CDS	84605733	84605810	84605733	ID=Msa1221120-mRNA-1:cds;Parent=Msa1221120-mRNA-1
chr8_1	CDS	84605979	84606057	84605979	ID=Msa1221120-mRNA-1:cds;Parent=Msa1221120-mRNA-1
chr8_1	CDS	84606857	84606955	84606857	ID=Msa1221120-mRNA-1:cds;Parent=Msa1221120-mRNA-1
chr8_1	CDS	84607031	84607107	84607031	ID=Msa1221120-mRNA-1:cds;Parent=Msa1221120-mRNA-1
chr8_1	CDS	84607747	84607815	84607747	ID=Msa1221120-mRNA-1:cds;Parent=Msa1221120-mRNA-1
chr8_1	CDS	84607918	84607999	84607918	ID=Msa1221120-mRNA-1:cds;Parent=Msa1221120-mRNA-1
chr8_1	three_prime_UTR	84608000	84608323	84608000	ID=Msa1221120-mRNA-1:three_prime_utr;Parent=Msa1221120-mRNA-1

Gene Sequence

>Msa1221120

ATGAGTCAGTTCGACGGTAACGCCGCTTTCTCCGGCGGCGGTTTCATGCCTTCTCAGGCCAATCAAGGCGGTGAATCCTCTCTCACTCCCTCCAAGAATCGCGAAAGTCAAACTTTGCTTCCGCTGACGATCAAGCAGATCAACCATGCTCTTCAATCAAGTGATGATAGAACCGGTCTTACTATTGACGGTGTTGGCGTTTACACTGTTACTCTTGTTGGTAGGGTTTGCAACAAATCTGGACAGATTACTGAATTTAAGTTTGTACTTGACGATGGCACTGGAACAATCGAGTGTACTAAATGGCTTCACGAACCTGCTGATGCAATGGCAGTGGAGAGTATCATGAATGGAATGTATGTGCGTTTATATGGACAATTGAAAGGTTTTCATGGTAAACAAACCTTAAGTATTTTCTCTCTCAGGCCCGTTACTGACTTCAATGAGATTGCCAGCCATTTCCTTGAGTGCATTTATGTTCATCTATATAATTCGAAGTTACAGCATACCCAGGCTAGCATCCCCAATCAGCAACATGCTCCCAATTCCATACAAAGCACTGCCACAAAAGGTTATCAAGCTCAAGCCATTCCACCAAATCAATTCTCCGGTCAGCAGAATAATGGTCAGAAGAGTGTTCATGACTTGGTGTTAGAATTTTTGGCTCTTCCCACAAACAGGGCAATGGAGGGGGGAATCTCTTGTGAATCTATTGCGAACAATCTTGGAGTTTCTTTGGATAAAGTCATACCTGCTCTTGATGTTCTTGGTAGCGAAGGTCTCGTTTATGAAGGTCTACCGATGCACTATAAGATATGTTCCGACGGTTGA

Protein sequence

>Msa1221120

MSQFDGNAAFSGGGFMPSQANQGGESSLTPSKNRESQTLLPLTIKQINHALQSSDDRTGLTIDGVGVYTVTLVGRVCNKSGQITEFKFVLDDGTGTIECTKWLHEPADAMAVESIMNGMYVRLYGQLKGFHGKQTLSIFSLRPVTDFNEIASHFLECIYVHLYNSKLQHTQASIPNQQHAPNSIQSTATKGYQAQAIPPNQFSGQQNNGQKSVHDLVLEFLALPTNRAMEGGISCESIANNLGVSLDKVIPALDVLGSEGLVYEGLPMHYKICSDG*