Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1221120 | XP_003610102.1 | 87.681 | 276 | 32 | 2 | 2 | 276 | 4 | 278 | 6.39e-177 | 498 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1221120 | sp|Q8LFJ8|RFA2B_ARATH | 44.737 | 266 | 140 | 3 | 4 | 266 | 6 | 267 | 3.42e-75 | 233 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015570 | Msa1221120 | 0.847059 | 1.469235e-59 | -8.615850e-47 |
| Msa0027280 | Msa1221120 | 0.801359 | 9.343744e-49 | -8.615850e-47 |
| Msa0035380 | Msa1221120 | 0.806699 | 7.245084e-50 | -8.615850e-47 |
| Msa0042640 | Msa1221120 | 0.832251 | 1.051515e-55 | -8.615850e-47 |
| Msa0062340 | Msa1221120 | 0.800084 | 1.701214e-48 | -8.615850e-47 |
| Msa0067060 | Msa1221120 | 0.826726 | 2.316005e-54 | -8.615850e-47 |
| Msa0067380 | Msa1221120 | 0.800818 | 1.205954e-48 | -8.615850e-47 |
| Msa0075530 | Msa1221120 | 0.822393 | 2.426895e-53 | -8.615850e-47 |
| Msa0078130 | Msa1221120 | 0.801423 | 9.069177e-49 | -8.615850e-47 |
| Msa0094570 | Msa1221120 | 0.981659 | 3.952668e-153 | -8.615850e-47 |
| Msa0094790 | Msa1221120 | 0.841472 | 4.654208e-58 | -8.615850e-47 |
| Msa0102240 | Msa1221120 | 0.801471 | 8.866534e-49 | -8.615850e-47 |
| Msa0112670 | Msa1221120 | 0.813234 | 2.837283e-51 | -8.615850e-47 |
| Msa0612520 | Msa1221120 | 0.830862 | 2.311611e-55 | -8.615850e-47 |
| Msa0619710 | Msa1221120 | 0.827738 | 1.325035e-54 | -8.615850e-47 |
| Msa0621710 | Msa1221120 | 0.802056 | 6.724706e-49 | -8.615850e-47 |
| Msa0625620 | Msa1221120 | 0.842554 | 2.409390e-58 | -8.615850e-47 |
| Msa0642550 | Msa1221120 | 0.801930 | 7.135790e-49 | -8.615850e-47 |
| Msa0647440 | Msa1221120 | 0.801343 | 9.416967e-49 | -8.615850e-47 |
| Msa0648760 | Msa1221120 | 0.810273 | 1.251166e-50 | -8.615850e-47 |
| Msa0657210 | Msa1221120 | 0.806937 | 6.453131e-50 | -8.615850e-47 |
| Msa0662820 | Msa1221120 | 0.817670 | 2.923995e-52 | -8.615850e-47 |
| Msa0691270 | Msa1221120 | 0.800697 | 1.275922e-48 | -8.615850e-47 |
| Msa0701250 | Msa1221120 | 0.808418 | 3.127966e-50 | -8.615850e-47 |
| Msa0706150 | Msa1221120 | 0.801232 | 9.920850e-49 | -8.615850e-47 |
| Msa0717900 | Msa1221120 | 0.805354 | 1.390137e-49 | -8.615850e-47 |
| Msa0719270 | Msa1221120 | 0.821422 | 4.072407e-53 | -8.615850e-47 |
| Msa0719750 | Msa1221120 | 0.806735 | 7.121121e-50 | -8.615850e-47 |
| Msa0737020 | Msa1221120 | 0.829615 | 4.663013e-55 | -8.615850e-47 |
| Msa0740710 | Msa1221120 | 0.812070 | 5.101326e-51 | -8.615850e-47 |
| Msa0745140 | Msa1221120 | 0.807961 | 3.914225e-50 | -8.615850e-47 |
| Msa0760970 | Msa1221120 | 0.806918 | 6.514189e-50 | -8.615850e-47 |
| Msa0776640 | Msa1221120 | 0.810422 | 1.162080e-50 | -8.615850e-47 |
| Msa0778600 | Msa1221120 | 0.865055 | 7.789639e-65 | -8.615850e-47 |
| Msa0780910 | Msa1221120 | 0.804917 | 1.715845e-49 | -8.615850e-47 |
| Msa0815970 | Msa1221120 | 0.832677 | 8.247843e-56 | -8.615850e-47 |
| Msa0821160 | Msa1221120 | 0.805695 | 1.178939e-49 | -8.615850e-47 |
| Msa0825920 | Msa1221120 | 0.803290 | 3.741626e-49 | -8.615850e-47 |
| Msa0840520 | Msa1221120 | 0.812891 | 3.374762e-51 | -8.615850e-47 |
| Msa0841050 | Msa1221120 | 0.804169 | 2.458182e-49 | -8.615850e-47 |
| Msa0841590 | Msa1221120 | 0.806902 | 6.563041e-50 | -8.615850e-47 |
| Msa0125590 | Msa1221120 | 0.800260 | 1.566488e-48 | -8.615850e-47 |
| Msa0140130 | Msa1221120 | 0.824050 | 9.956524e-54 | -8.615850e-47 |
| Msa0140380 | Msa1221120 | 0.803401 | 3.547534e-49 | -8.615850e-47 |
| Msa0141640 | Msa1221120 | 0.830847 | 2.332533e-55 | -8.615850e-47 |
| Msa0156050 | Msa1221120 | 0.839625 | 1.416952e-57 | -8.615850e-47 |
| Msa0156090 | Msa1221120 | 0.837903 | 3.948833e-57 | -8.615850e-47 |
| Msa0170070 | Msa1221120 | 0.802559 | 5.297592e-49 | -8.615850e-47 |
| Msa0176060 | Msa1221120 | 0.801615 | 8.280595e-49 | -8.615850e-47 |
| Msa0178450 | Msa1221120 | 0.833360 | 5.576981e-56 | -8.615850e-47 |
| Msa0367690 | Msa1221120 | 0.803526 | 3.342630e-49 | -8.615850e-47 |
| Msa0373170 | Msa1221120 | 0.803108 | 4.080544e-49 | -8.615850e-47 |
| Msa0373500 | Msa1221120 | 0.813332 | 2.700825e-51 | -8.615850e-47 |
| Msa0383000 | Msa1221120 | 0.802913 | 4.477748e-49 | -8.615850e-47 |
| Msa0412130 | Msa1221120 | 0.800396 | 1.469983e-48 | -8.615850e-47 |
| Msa0415450 | Msa1221120 | 0.819985 | 8.712618e-53 | -8.615850e-47 |
| Msa0432010 | Msa1221120 | 0.813743 | 2.192672e-51 | -8.615850e-47 |
| Msa0433150 | Msa1221120 | 0.802215 | 6.237192e-49 | -8.615850e-47 |
| Msa0456670 | Msa1221120 | 0.809271 | 2.054690e-50 | -8.615850e-47 |
| Msa0457570 | Msa1221120 | 0.817943 | 2.536743e-52 | -8.615850e-47 |
| Msa0460070 | Msa1221120 | 0.822821 | 1.929648e-53 | -8.615850e-47 |
| Msa0466520 | Msa1221120 | 0.814176 | 1.759875e-51 | -8.615850e-47 |
| Msa0467170 | Msa1221120 | 0.812885 | 3.384780e-51 | -8.615850e-47 |
| Msa0467330 | Msa1221120 | 0.809392 | 1.935854e-50 | -8.615850e-47 |
| Msa0467690 | Msa1221120 | 0.800244 | 1.578734e-48 | -8.615850e-47 |
| Msa0468620 | Msa1221120 | 0.828120 | 1.072817e-54 | -8.615850e-47 |
| Msa1060900 | Msa1221120 | 0.807900 | 4.031539e-50 | -8.615850e-47 |
| Msa1079640 | Msa1221120 | 0.805148 | 1.535582e-49 | -8.615850e-47 |
| Msa1082380 | Msa1221120 | 0.808066 | 3.716736e-50 | -8.615850e-47 |
| Msa0238960 | Msa1221120 | -0.803672 | 3.117332e-49 | -8.615850e-47 |
| Msa0262750 | Msa1221120 | 0.804466 | 2.131805e-49 | -8.615850e-47 |
| Msa0284800 | Msa1221120 | 0.815820 | 7.601548e-52 | -8.615850e-47 |
| Msa1148630 | Msa1221120 | 0.812744 | 3.633370e-51 | -8.615850e-47 |
| Msa1159590 | Msa1221120 | 0.811487 | 6.830850e-51 | -8.615850e-47 |
| Msa1183910 | Msa1221120 | 0.832970 | 6.975380e-56 | -8.615850e-47 |
| Msa1190390 | Msa1221120 | 0.819369 | 1.204509e-52 | -8.615850e-47 |
| Msa1192560 | Msa1221120 | 0.847770 | 9.368659e-60 | -8.615850e-47 |
| Msa1192590 | Msa1221120 | 0.842407 | 2.635043e-58 | -8.615850e-47 |
| Msa1201170 | Msa1221120 | 0.814355 | 1.607181e-51 | -8.615850e-47 |
| Msa1215690 | Msa1221120 | 0.800465 | 1.423157e-48 | -8.615850e-47 |
| Msa1221120 | Msa1228580 | 0.850701 | 1.432130e-60 | -8.615850e-47 |
| Msa1221120 | Msa1228630 | 0.800353 | 1.499531e-48 | -8.615850e-47 |
| Msa1221120 | Msa1244240 | 0.807173 | 5.753141e-50 | -8.615850e-47 |
| Msa1221120 | Msa1252790 | 0.814576 | 1.435706e-51 | -8.615850e-47 |
| Msa1221120 | Msa1254540 | 0.813993 | 1.931800e-51 | -8.615850e-47 |
| Msa1221120 | Msa1265450 | 0.997572 | 5.618207e-245 | -8.615850e-47 |
| Msa1221120 | Msa1267930 | 0.809002 | 2.346852e-50 | -8.615850e-47 |
| Msa1221120 | Msa1279120 | 0.820658 | 6.104766e-53 | -8.615850e-47 |
| Msa1221120 | Msa1294280 | 0.802855 | 4.602090e-49 | -8.615850e-47 |
| Msa1221120 | Msa1300460 | 0.816198 | 6.257586e-52 | -8.615850e-47 |
| Msa1221120 | Msa1308850 | 0.844547 | 7.064226e-59 | -8.615850e-47 |
| Msa1221120 | Msa1364410 | 0.813544 | 2.425217e-51 | -8.615850e-47 |
| Msa1221120 | Msa1368750 | 0.813774 | 2.158494e-51 | -8.615850e-47 |
| Msa1221120 | Msa1374790 | 0.810133 | 1.341291e-50 | -8.615850e-47 |
| Msa1221120 | Msa1384150 | 0.808498 | 3.007536e-50 | -8.615850e-47 |
| Msa1221120 | Msa1406720 | 0.813903 | 2.022421e-51 | -8.615850e-47 |
| Msa1221120 | Msa1409410 | 0.808400 | 3.156080e-50 | -8.615850e-47 |
| Msa1221120 | Msa1417370 | 0.833126 | 6.380168e-56 | -8.615850e-47 |
| Msa1221120 | Msa1435960 | 0.831976 | 1.229577e-55 | -8.615850e-47 |
| Msa1221120 | Msa1436620 | 0.816196 | 6.264236e-52 | -8.615850e-47 |
| Msa1221120 | Msa1450190 | 0.805928 | 1.053418e-49 | -8.615850e-47 |
| Msa1221120 | Msa1451820 | 0.807535 | 4.821062e-50 | -8.615850e-47 |
| Msa1221120 | Msa1454010 | 0.823552 | 1.302646e-53 | -8.615850e-47 |
| Msa1221120 | Msa1457840 | 0.808546 | 2.936356e-50 | -8.615850e-47 |
| Msa0507810 | Msa1221120 | 0.802471 | 5.523861e-49 | -8.615850e-47 |
| Msa0507920 | Msa1221120 | 0.820189 | 7.821050e-53 | -8.615850e-47 |
| Msa0513080 | Msa1221120 | 0.810444 | 1.149340e-50 | -8.615850e-47 |
| Msa0514500 | Msa1221120 | 0.825468 | 4.611148e-54 | -8.615850e-47 |
| Msa0520870 | Msa1221120 | 0.814916 | 1.207510e-51 | -8.615850e-47 |
| Msa0527850 | Msa1221120 | 0.832572 | 8.758679e-56 | -8.615850e-47 |
| Msa0531960 | Msa1221120 | 0.809368 | 1.958906e-50 | -8.615850e-47 |
| Msa0541740 | Msa1221120 | 0.807384 | 5.190383e-50 | -8.615850e-47 |
| Msa0570010 | Msa1221120 | 0.802881 | 4.545514e-49 | -8.615850e-47 |
| Msa0580810 | Msa1221120 | 0.800620 | 1.323295e-48 | -8.615850e-47 |
| Msa0582460 | Msa1221120 | 0.835136 | 2.000403e-56 | -8.615850e-47 |
| Msa0586200 | Msa1221120 | 0.837280 | 5.706333e-57 | -8.615850e-47 |
| Msa0865420 | Msa1221120 | 0.816116 | 6.525980e-52 | -8.615850e-47 |
| Msa0866530 | Msa1221120 | 0.862761 | 4.031740e-64 | -8.615850e-47 |
| Msa0879920 | Msa1221120 | 0.819310 | 1.242181e-52 | -8.615850e-47 |
| Msa0900760 | Msa1221120 | 0.800165 | 1.637556e-48 | -8.615850e-47 |
| Msa0945030 | Msa1221120 | 0.814709 | 1.341795e-51 | -8.615850e-47 |
| Msa0972740 | Msa1221120 | 0.810785 | 9.699591e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1221120 | MtrunA17_Chr4g0072301 | 87.681 | 276 | 32 | 2 | 2 | 276 | 4 | 278 | 0.0 | 498 |
| Msa1221120 | MtrunA17_Chr1g0148131 | 39.781 | 274 | 157 | 5 | 2 | 273 | 5 | 272 | 5.08e-66 | 207 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1221120 | AT3G02920.1 | 44.737 | 266 | 140 | 3 | 4 | 266 | 6 | 267 | 3.48e-76 | 233 |
| Msa1221120 | AT2G24490.1 | 41.606 | 274 | 153 | 5 | 2 | 271 | 5 | 275 | 1.03e-68 | 214 |
| Msa1221120 | AT2G24490.2 | 41.606 | 274 | 153 | 5 | 2 | 271 | 5 | 275 | 1.03e-68 | 214 |
| Msa1221120 | AT3G02920.3 | 46.875 | 224 | 112 | 3 | 4 | 224 | 6 | 225 | 4.42e-67 | 208 |
| Msa1221120 | AT3G02920.2 | 46.875 | 224 | 112 | 3 | 4 | 224 | 6 | 225 | 4.42e-67 | 208 |
Find 88 sgRNAs with CRISPR-Local
Find 288 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGACCTGCTCTTGATGTTCT+TGG | 0.266087 | 8_1:+84607916 | Msa1221120:intron |
| ATATTTAATATCAAAATAAT+TGG | 0.266733 | 8_1:-84604218 | None:intergenic |
| TCTATATAATTCGAAGTTAC+AGG | 0.284161 | 8_1:+84606036 | Msa1221120:CDS |
| GGAATGTATGTGCGTTTATA+TGG | 0.285958 | 8_1:+84605737 | Msa1221120:CDS |
| GAACAATCTTGGAGTTTCTT+TGG | 0.301777 | 8_1:+84607783 | Msa1221120:CDS |
| GCTGATTGGGGATGCTAGCC+TGG | 0.316731 | 8_1:-84606862 | None:intergenic |
| TTGGGAGCATGTTGCTGATT+GGG | 0.326890 | 8_1:-84606875 | None:intergenic |
| GAATCTATTGCGAACAATCT+TGG | 0.341410 | 8_1:+84607772 | Msa1221120:CDS |
| GGCAGTGCTTTGTATGGAAT+TGG | 0.344322 | 8_1:-84606894 | None:intergenic |
| TAATGCATCTGTTGTGTAAA+CGG | 0.354904 | 8_1:+84608213 | Msa1221120:three_prime_UTR |
| GGTAGGGTTTGCAACAAATC+TGG | 0.360046 | 8_1:+84604733 | Msa1221120:CDS |
| TCTGTCCAGGTTACTCTTGT+TGG | 0.363119 | 8_1:+84604712 | Msa1221120:intron |
| GAACAATCGAGTGTACTAAA+TGG | 0.372337 | 8_1:+84604797 | Msa1221120:CDS |
| TATGGTTGACTTACTTGATT+TGG | 0.375750 | 8_1:-84606947 | None:intergenic |
| AGGCAAAGTAGAGCATATTA+AGG | 0.395757 | 8_1:-84608028 | None:intergenic |
| GACGGTAACGCCGCTTTCTC+CGG | 0.395800 | 8_1:+84604309 | Msa1221120:CDS |
| CCTGAGAGAGAAAATACTTA+AGG | 0.400373 | 8_1:-84605789 | None:intergenic |
| TGTTCCGACGGTTGACATCT+TGG | 0.401459 | 8_1:+84607985 | Msa1221120:exon |
| ATTGGGAGCATGTTGCTGAT+TGG | 0.409358 | 8_1:-84606876 | None:intergenic |
| AATGCATCTGTTGTGTAAAC+GGG | 0.411134 | 8_1:+84608214 | Msa1221120:three_prime_UTR |
| CATAAATGCACTCAAGGAAA+TGG | 0.411902 | 8_1:-84606009 | None:intergenic |
| TGCTATCTATCGCTAGTTCA+AGG | 0.414089 | 8_1:-84608183 | None:intergenic |
| CGGCGGTTTCATGCCTTCTC+AGG | 0.416064 | 8_1:+84604332 | Msa1221120:CDS |
| TCTGTTCAATCACGGAAAAT+CGG | 0.416253 | 8_1:+84604270 | Msa1221120:five_prime_UTR |
| CCAGGTTACTCTTGTTGGTA+GGG | 0.423374 | 8_1:+84604717 | Msa1221120:intron |
| AGAGGATTCACCGCCTTGAT+TGG | 0.430570 | 8_1:-84604355 | None:intergenic |
| TCCAGGTTACTCTTGTTGGT+AGG | 0.433239 | 8_1:+84604716 | Msa1221120:intron |
| ATGTTTCAGGGCAATGGAGG+GGG | 0.447338 | 8_1:+84607738 | Msa1221120:intron |
| ATAAGGAAAAGCTGTAGATC+TGG | 0.459153 | 8_1:+84608089 | Msa1221120:three_prime_UTR |
| ATTCTACATATGCGGACATA+AGG | 0.460664 | 8_1:+84608072 | Msa1221120:three_prime_UTR |
| GCAGTGCTTTGTATGGAATT+GGG | 0.465281 | 8_1:-84606893 | None:intergenic |
| ACTTACTTGATTTGGTGGAA+TGG | 0.471859 | 8_1:-84606939 | None:intergenic |
| ATGCCTTCTCAGGCCAATCA+AGG | 0.473622 | 8_1:+84604342 | Msa1221120:CDS |
| ATCTCATTGAAGTCAGTAAC+GGG | 0.478767 | 8_1:-84605980 | None:intergenic |
| TTACTGATGTTTCAGGGCAA+TGG | 0.480244 | 8_1:+84607732 | Msa1221120:intron |
| AACGCCGCTTTCTCCGGCGG+CGG | 0.487082 | 8_1:+84604315 | Msa1221120:CDS |
| TCCACTGCCATTGCATCAGC+AGG | 0.490315 | 8_1:-84604936 | None:intergenic |
| CGTTTATATGGACAATTGAA+AGG | 0.493252 | 8_1:+84605749 | Msa1221120:CDS |
| TCGAAATTTCTGTTCAATCA+CGG | 0.494939 | 8_1:+84604262 | Msa1221120:five_prime_UTR |
| TTTGTACTTGACGATGGCAC+TGG | 0.500314 | 8_1:+84604775 | Msa1221120:CDS |
| GGTTGACTTACTTGATTTGG+TGG | 0.502710 | 8_1:-84606944 | None:intergenic |
| CCGCCTTGATTGGCCTGAGA+AGG | 0.504121 | 8_1:-84604345 | None:intergenic |
| TTCTCCGGTCAGCAGAATAA+TGG | 0.506082 | 8_1:+84607031 | Msa1221120:CDS |
| CAATCAAGTGATGATAGAAC+CGG | 0.507029 | 8_1:+84604593 | Msa1221120:CDS |
| TTTAAAATACACCTGTTTGT+GGG | 0.516085 | 8_1:-84607097 | None:intergenic |
| ATACAAAGCACTGCCACAAA+AGG | 0.519488 | 8_1:+84606902 | Msa1221120:CDS |
| GGTTGACATCTTGGTGGCAG+AGG | 0.522125 | 8_1:+84607994 | Msa1221120:exon |
| CTGATGTTTCAGGGCAATGG+AGG | 0.528490 | 8_1:+84607735 | Msa1221120:intron |
| CTGATTGGGGATGCTAGCCT+GGG | 0.532257 | 8_1:-84606861 | None:intergenic |
| ATCCTCTCTCACTCCCTCCA+AGG | 0.534425 | 8_1:+84604371 | Msa1221120:CDS |
| AACCTTGGAGGGAGTGAGAG+AGG | 0.538834 | 8_1:-84604373 | None:intergenic |
| TGATGTTTCAGGGCAATGGA+GGG | 0.541054 | 8_1:+84607736 | Msa1221120:intron |
| GATGAACATAAATGCACTCA+AGG | 0.548211 | 8_1:-84606015 | None:intergenic |
| CTTGATGTTCTTGGTAGCGA+AGG | 0.548492 | 8_1:+84607925 | Msa1221120:CDS |
| TCACGAACCTGCTGATGCAA+TGG | 0.548561 | 8_1:+84604929 | Msa1221120:CDS |
| GAAACCGCCGCCGGAGAAAG+CGG | 0.554313 | 8_1:-84604319 | None:intergenic |
| GTCCGCATATGTAGAATCAC+AGG | 0.556314 | 8_1:-84608066 | None:intergenic |
| GGTCTTACTATTGACGGTGT+TGG | 0.564776 | 8_1:+84604614 | Msa1221120:CDS |
| ACCTGCTGATGCAATGGCAG+TGG | 0.566074 | 8_1:+84604935 | Msa1221120:CDS |
| AGCGAAGGTCTCGTTTATGA+AGG | 0.568213 | 8_1:+84607940 | Msa1221120:CDS |
| AATGCACTCAAGGAAATGGC+TGG | 0.568941 | 8_1:-84606005 | None:intergenic |
| TGGGAGCATGTTGCTGATTG+GGG | 0.569773 | 8_1:-84606874 | None:intergenic |
| TCCGACGGTTGACATCTTGG+TGG | 0.571154 | 8_1:+84607988 | Msa1221120:exon |
| GATGTTTCAGGGCAATGGAG+GGG | 0.572668 | 8_1:+84607737 | Msa1221120:intron |
| GCTATCTATCGCTAGTTCAA+GGG | 0.573987 | 8_1:-84608182 | None:intergenic |
| CATCACTTGATTGAAGAGCA+TGG | 0.578483 | 8_1:-84604583 | None:intergenic |
| CTGACCATTATTCTGCTGAC+CGG | 0.581910 | 8_1:-84607035 | None:intergenic |
| CTACCAAGAACATCAAGAGC+AGG | 0.583911 | 8_1:-84607919 | None:intergenic |
| GAACATATCTTATAGTGCAT+CGG | 0.584167 | 8_1:-84607967 | None:intergenic |
| AACACCGTCAATAGTAAGAC+CGG | 0.588874 | 8_1:-84604612 | None:intergenic |
| AGAACTGAGAAGAACCTTGG+AGG | 0.589879 | 8_1:-84604385 | None:intergenic |
| TTTAAGTTTGTACTTGACGA+TGG | 0.593316 | 8_1:+84604769 | Msa1221120:CDS |
| AGAACCGGTCTTACTATTGA+CGG | 0.593890 | 8_1:+84604608 | Msa1221120:CDS |
| ATATTTGTGGCAGCATACCC+AGG | 0.594726 | 8_1:+84606844 | Msa1221120:intron |
| CACTATAAGATATGTTCCGA+CGG | 0.597266 | 8_1:+84607973 | Msa1221120:CDS |
| GGTAACGCCGCTTTCTCCGG+CGG | 0.597825 | 8_1:+84604312 | Msa1221120:CDS |
| AATCTCATTGAAGTCAGTAA+CGG | 0.599498 | 8_1:-84605981 | None:intergenic |
| GAACTGAGAAGAACCTTGGA+GGG | 0.608680 | 8_1:-84604384 | None:intergenic |
| TGTTTCAGGGCAATGGAGGG+GGG | 0.625958 | 8_1:+84607739 | Msa1221120:intron |
| GTTACCGTCGAACTGACTCA+TGG | 0.626404 | 8_1:-84604295 | None:intergenic |
| TACCTGTGATTCTACATATG+CGG | 0.631647 | 8_1:+84608064 | Msa1221120:three_prime_UTR |
| TCAGAAGAGTGTTCATGACT+TGG | 0.632574 | 8_1:+84607054 | Msa1221120:CDS |
| AGAAGGCATGAAACCGCCGC+CGG | 0.632650 | 8_1:-84604328 | None:intergenic |
| TTGATCTGCTTGATCGTCAG+CGG | 0.639696 | 8_1:-84604560 | None:intergenic |
| GCCACCAAGATGTCAACCGT+CGG | 0.642703 | 8_1:-84607989 | None:intergenic |
| GTGAAGAAAGTAGAAACAAG+CGG | 0.667712 | 8_1:+84604152 | None:intergenic |
| GGCACCATGAGTCAGTTCGA+CGG | 0.714184 | 8_1:+84604291 | Msa1221120:exon |
| CCTTCTCAGGCCAATCAAGG+CGG | 0.735731 | 8_1:+84604345 | Msa1221120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTTTTGAAAGATA+AGG | + | chr8_1:84608293-84608312 | Msa1221120:three_prime_UTR | 10.0% |
| !!! | TTTTTTTTTTTGAAAGATAA+GGG | + | chr8_1:84608294-84608313 | Msa1221120:three_prime_UTR | 10.0% |
| !! | TAAGATTATTAAGAAGAAAA+TGG | - | chr8_1:84604417-84604436 | None:intergenic | 15.0% |
| !!! | TTTTTTTCCATAAAAGAAAA+AGG | + | chr8_1:84605439-84605458 | Msa1221120:intron | 15.0% |
| !! | ATTAAAAAGTTAAAGGTTTA+GGG | - | chr8_1:84605590-84605609 | None:intergenic | 15.0% |
| !!! | ATTTTATTTTGTAATGACTA+GGG | - | chr8_1:84606159-84606178 | None:intergenic | 15.0% |
| !!! | TATTTTATTTTGTAATGACT+AGG | - | chr8_1:84606160-84606179 | None:intergenic | 15.0% |
| !! | AATAACACAGAATCAAAAAT+CGG | + | chr8_1:84604175-84604194 | Msa1221120:five_prime_UTR | 20.0% |
| !! | TTATACTTTCTATGTAAGTA+AGG | + | chr8_1:84605052-84605071 | Msa1221120:intron | 20.0% |
| !!! | TCTTATAACTAAGTTTTACT+AGG | + | chr8_1:84605383-84605402 | Msa1221120:intron | 20.0% |
| !!! | TTTCTTTCCTTTTTCTTTTA+TGG | - | chr8_1:84605449-84605468 | None:intergenic | 20.0% |
| !! | GATTAAAAAGTTAAAGGTTT+AGG | - | chr8_1:84605591-84605610 | None:intergenic | 20.0% |
| !!! | AAAATTCCATTTTCATTGTT+AGG | + | chr8_1:84605711-84605730 | Msa1221120:intron | 20.0% |
| !!! | TTTTTATAGTGTGAATTTTG+TGG | - | chr8_1:84606192-84606211 | None:intergenic | 20.0% |
| !! | TGAAAATAAGATACATGTTT+AGG | + | chr8_1:84606611-84606630 | Msa1221120:intron | 20.0% |
| !! | GAAAATAAGATACATGTTTA+GGG | + | chr8_1:84606612-84606631 | Msa1221120:intron | 20.0% |
| !!! | ATTAAATTACTGTTTCTTGT+TGG | - | chr8_1:84606687-84606706 | None:intergenic | 20.0% |
| !! | TAAGCAGAAAATAAAAGATA+TGG | - | chr8_1:84606968-84606987 | None:intergenic | 20.0% |
| !!! | CTTTGTTATTTCTTGAATTT+CGG | + | chr8_1:84607185-84607204 | Msa1221120:intron | 20.0% |
| !! | GTCAACTAGTAAAAAATTTA+CGG | + | chr8_1:84607424-84607443 | Msa1221120:intron | 20.0% |
| !!! | CAGTGACAAAAAATTATTTT+TGG | + | chr8_1:84607469-84607488 | Msa1221120:intron | 20.0% |
| !!! | TGTTTTACTTTGTTAGAATT+GGG | + | chr8_1:84607665-84607684 | Msa1221120:intron | 20.0% |
| !!! | AACATCAGTAACAAAATTTT+AGG | - | chr8_1:84607723-84607742 | None:intergenic | 20.0% |
| ! | ATAACACAGAATCAAAAATC+GGG | + | chr8_1:84604176-84604195 | Msa1221120:five_prime_UTR | 25.0% |
| !! | TCATGTAATTGATGTGTTTT+AGG | + | chr8_1:84604492-84604511 | Msa1221120:intron | 25.0% |
| !! | CATGTAATTGATGTGTTTTA+GGG | + | chr8_1:84604493-84604512 | Msa1221120:intron | 25.0% |
| ! | GTACTAAATGCAATACAATA+AGG | - | chr8_1:84605005-84605024 | None:intergenic | 25.0% |
| ! | ATTGCATTTAGTACTATACT+TGG | + | chr8_1:84605011-84605030 | Msa1221120:intron | 25.0% |
| ! | GGGTGATTATAATATCAAAA+TGG | - | chr8_1:84605256-84605275 | None:intergenic | 25.0% |
| ! | AACTTAGTTATAAGAAGAAG+CGG | - | chr8_1:84605378-84605397 | None:intergenic | 25.0% |
| ! | CATTTGCCATTCAAAATAAA+AGG | - | chr8_1:84605517-84605536 | None:intergenic | 25.0% |
| ! | TAGTATGTAAATTGTTGTGT+CGG | + | chr8_1:84605538-84605557 | Msa1221120:intron | 25.0% |
| ! | CAAAGGGATTAAAAAGTTAA+AGG | - | chr8_1:84605597-84605616 | None:intergenic | 25.0% |
| ! | ATAAATAAATAAACCAGAGG+GGG | - | chr8_1:84605661-84605680 | None:intergenic | 25.0% |
| ! | GATAAATAAATAAACCAGAG+GGG | - | chr8_1:84605662-84605681 | None:intergenic | 25.0% |
| ! | CGATAAATAAATAAACCAGA+GGG | - | chr8_1:84605663-84605682 | None:intergenic | 25.0% |
| ! | ACGATAAATAAATAAACCAG+AGG | - | chr8_1:84605664-84605683 | None:intergenic | 25.0% |
| ! | TCTATATAATTCGAAGTTAC+AGG | + | chr8_1:84606036-84606055 | Msa1221120:CDS | 25.0% |
| ! | ACTCTCAGTTGTATAAAATT+AGG | + | chr8_1:84606219-84606238 | Msa1221120:intron | 25.0% |
| !!! | TTTAGGTTTTGAATTTGACA+GGG | - | chr8_1:84606334-84606353 | None:intergenic | 25.0% |
| !!! | ATTTAGGTTTTGAATTTGAC+AGG | - | chr8_1:84606335-84606354 | None:intergenic | 25.0% |
| !! | TATAAAGAACTAATTTGCCT+AGG | + | chr8_1:84606730-84606749 | Msa1221120:intron | 25.0% |
| !! | TTTAAAATACACCTGTTTGT+GGG | - | chr8_1:84607100-84607119 | None:intergenic | 25.0% |
| !!! | TTTTAAAATACACCTGTTTG+TGG | - | chr8_1:84607101-84607120 | None:intergenic | 25.0% |
| ! | TAACAGCTGTTATATGTTAT+AGG | - | chr8_1:84607154-84607173 | None:intergenic | 25.0% |
| ! | CGAAATTCAAGAAATAACAA+AGG | - | chr8_1:84607187-84607206 | None:intergenic | 25.0% |
| !! | AGTAGAAAACACACAATTTT+GGG | - | chr8_1:84607372-84607391 | None:intergenic | 25.0% |
| !! | AAGTAGAAAACACACAATTT+TGG | - | chr8_1:84607373-84607392 | None:intergenic | 25.0% |
| ! | AACTAGTAAAAAATTTACGG+TGG | + | chr8_1:84607427-84607446 | Msa1221120:intron | 25.0% |
| !!! | TTTTTGGCAATTTAACTTGA+TGG | + | chr8_1:84607485-84607504 | Msa1221120:intron | 25.0% |
| ! | CTGAAAACTTAATAGTAATC+TGG | - | chr8_1:84607550-84607569 | None:intergenic | 25.0% |
| ! | AACACAGATAAATAACAGAT+TGG | - | chr8_1:84607649-84607668 | None:intergenic | 25.0% |
| !! | GTGTTTTACTTTGTTAGAAT+TGG | + | chr8_1:84607664-84607683 | Msa1221120:intron | 25.0% |
| !!! | AGTAACAAAATTTTAGGTTG+TGG | - | chr8_1:84607717-84607736 | None:intergenic | 25.0% |
| !! | AATTTTGTTACTGATGTTTC+AGG | + | chr8_1:84607725-84607744 | Msa1221120:intron | 25.0% |
| !! | ATTTTGTTACTGATGTTTCA+GGG | + | chr8_1:84607726-84607745 | Msa1221120:intron | 25.0% |
| !!! | GAGATTAATCACTTTTAAAC+AGG | + | chr8_1:84608254-84608273 | Msa1221120:three_prime_UTR | 25.0% |
| TAACACAGAATCAAAAATCG+GGG | + | chr8_1:84604177-84604196 | Msa1221120:five_prime_UTR | 30.0% | |
| TCGAAATTTCTGTTCAATCA+CGG | + | chr8_1:84604262-84604281 | Msa1221120:five_prime_UTR | 30.0% | |
| CTATTGTGAATTACGATTTG+TGG | + | chr8_1:84604665-84604684 | Msa1221120:intron | 30.0% | |
| ! | TTTAAGTTTGTACTTGACGA+TGG | + | chr8_1:84604769-84604788 | Msa1221120:CDS | 30.0% |
| TACTTGGTTAATGTCTAATC+AGG | + | chr8_1:84605027-84605046 | Msa1221120:intron | 30.0% | |
| CTTTCTATGTAAGTAAGGAT+AGG | + | chr8_1:84605057-84605076 | Msa1221120:intron | 30.0% | |
| ATGTAAGTAAGGATAGGAAT+AGG | + | chr8_1:84605063-84605082 | Msa1221120:intron | 30.0% | |
| GATATTATAATCACCCTTGT+CGG | + | chr8_1:84605260-84605279 | Msa1221120:intron | 30.0% | |
| ! | GATGAGAAAGCATAAAAAAG+TGG | - | chr8_1:84605356-84605375 | None:intergenic | 30.0% |
| AGAAATATGTGATTGCATTG+AGG | + | chr8_1:84605464-84605483 | Msa1221120:intron | 30.0% | |
| TGCCATTCAAAATAAAAGGA+GGG | - | chr8_1:84605513-84605532 | None:intergenic | 30.0% | |
| TTGCCATTCAAAATAAAAGG+AGG | - | chr8_1:84605514-84605533 | None:intergenic | 30.0% | |
| ! | TCCATTTTCATTGTTAGGAA+TGG | + | chr8_1:84605716-84605735 | Msa1221120:intron | 30.0% |
| TCCATTCCTAACAATGAAAA+TGG | - | chr8_1:84605720-84605739 | None:intergenic | 30.0% | |
| CGTTTATATGGACAATTGAA+AGG | + | chr8_1:84605749-84605768 | Msa1221120:CDS | 30.0% | |
| TGTCGTTAATCTATTACCAT+AGG | + | chr8_1:84605883-84605902 | Msa1221120:intron | 30.0% | |
| CCTGAAAATGACACAAATTA+AGG | - | chr8_1:84605960-84605979 | None:intergenic | 30.0% | |
| !!! | CCTTAATTTGTGTCATTTTC+AGG | + | chr8_1:84605957-84605976 | Msa1221120:intron | 30.0% |
| AATCTCATTGAAGTCAGTAA+CGG | - | chr8_1:84605984-84606003 | None:intergenic | 30.0% | |
| ! | TTATAGTGTGAATTTTGTGG+TGG | - | chr8_1:84606189-84606208 | None:intergenic | 30.0% |
| TTATACAACTGAGAGTTTGA+AGG | - | chr8_1:84606215-84606234 | None:intergenic | 30.0% | |
| ! | GTTTACCTGTTTCATGTTTT+GGG | - | chr8_1:84606276-84606295 | None:intergenic | 30.0% |
| ! | TGTTTACCTGTTTCATGTTT+TGG | - | chr8_1:84606277-84606296 | None:intergenic | 30.0% |
| ! | TTTTGAATTTGACAGGGAAT+CGG | - | chr8_1:84606328-84606347 | None:intergenic | 30.0% |
| AGAAAACACTAAGAATACCT+TGG | + | chr8_1:84606397-84606416 | Msa1221120:intron | 30.0% | |
| AGAAAGAAGAAAAAAAGTCG+TGG | + | chr8_1:84606565-84606584 | Msa1221120:intron | 30.0% | |
| GAAAGAAGAAAAAAAGTCGT+GGG | + | chr8_1:84606566-84606585 | Msa1221120:intron | 30.0% | |
| ACTTATAAGTCCATGTCTTT+AGG | - | chr8_1:84606647-84606666 | None:intergenic | 30.0% | |
| ! | AATGATTTGTGCCATATTTG+TGG | + | chr8_1:84606831-84606850 | Msa1221120:intron | 30.0% |
| ! | TATGGTTGACTTACTTGATT+TGG | - | chr8_1:84606950-84606969 | None:intergenic | 30.0% |
| ! | AGTTTTTATCATATCCTCAC+TGG | + | chr8_1:84606987-84607006 | Msa1221120:intron | 30.0% |
| !!! | TGACTTGGTGTTAGAATTTT+TGG | + | chr8_1:84607069-84607088 | Msa1221120:CDS | 30.0% |
| !! | ATTTCTTGAATTTCGGTGTT+AGG | + | chr8_1:84607192-84607211 | Msa1221120:intron | 30.0% |
| TGTTAGTTGAGAGTTAAGTT+AGG | + | chr8_1:84607217-84607236 | Msa1221120:intron | 30.0% | |
| ! | TAACTTGATGGCATATTACA+TGG | + | chr8_1:84607497-84607516 | Msa1221120:intron | 30.0% |
| TTAATAGTAATCTGGTGTGA+TGG | - | chr8_1:84607542-84607561 | None:intergenic | 30.0% | |
| TTAGAATTGGGATTACTTGA+AGG | + | chr8_1:84607677-84607696 | Msa1221120:intron | 30.0% | |
| !!! | AAATTTTAGGTTGTGGATAC+TGG | - | chr8_1:84607710-84607729 | None:intergenic | 30.0% |
| AGGAGTCAAAAAACATAACT+TGG | - | chr8_1:84607883-84607902 | None:intergenic | 30.0% | |
| GAACATATCTTATAGTGCAT+CGG | - | chr8_1:84607970-84607989 | None:intergenic | 30.0% | |
| TAATGCATCTGTTGTGTAAA+CGG | + | chr8_1:84608213-84608232 | Msa1221120:three_prime_UTR | 30.0% | |
| CAAAAATCGGGGAAGAAAAA+TGG | + | chr8_1:84604188-84604207 | Msa1221120:five_prime_UTR | 35.0% | |
| TCTGTTCAATCACGGAAAAT+CGG | + | chr8_1:84604270-84604289 | Msa1221120:five_prime_UTR | 35.0% | |
| AACATCAATTAGACACGCTA+GGG | + | chr8_1:84604442-84604461 | Msa1221120:intron | 35.0% | |
| CAATCAAGTGATGATAGAAC+CGG | + | chr8_1:84604593-84604612 | Msa1221120:CDS | 35.0% | |
| ! | CTCACAATTTTATTCTGTCC+AGG | + | chr8_1:84604699-84604718 | Msa1221120:intron | 35.0% |
| GAACAATCGAGTGTACTAAA+TGG | + | chr8_1:84604797-84604816 | Msa1221120:CDS | 35.0% | |
| GTATGTTACCTTTCCTTTAC+AGG | + | chr8_1:84604968-84604987 | Msa1221120:intron | 35.0% | |
| CATACAATCCTGTAAAGGAA+AGG | - | chr8_1:84604979-84604998 | None:intergenic | 35.0% | |
| !! | GTTTGGTGTTTGTTAAGTCT+AGG | - | chr8_1:84605102-84605121 | None:intergenic | 35.0% |
| GACTTAACAAACACCAAACA+TGG | + | chr8_1:84605103-84605122 | Msa1221120:intron | 35.0% | |
| AAAATTGCAGACTACAGATC+AGG | - | chr8_1:84605155-84605174 | None:intergenic | 35.0% | |
| CTTCTCCATACTTACAGATA+GGG | - | chr8_1:84605306-84605325 | None:intergenic | 35.0% | |
| TCTTCTCCATACTTACAGAT+AGG | - | chr8_1:84605307-84605326 | None:intergenic | 35.0% | |
| AATATGTGATTGCATTGAGG+TGG | + | chr8_1:84605467-84605486 | Msa1221120:intron | 35.0% | |
| CCATTCAAAATAAAAGGAGG+GGG | - | chr8_1:84605511-84605530 | None:intergenic | 35.0% | |
| GCCATTCAAAATAAAAGGAG+GGG | - | chr8_1:84605512-84605531 | None:intergenic | 35.0% | |
| ! | AAGGTTTAGGGTTCAAATCT+TGG | - | chr8_1:84605578-84605597 | None:intergenic | 35.0% |
| GGAATGTATGTGCGTTTATA+TGG | + | chr8_1:84605737-84605756 | Msa1221120:CDS | 35.0% | |
| ! | GGACAATTGAAAGGTTTTCA+TGG | + | chr8_1:84605758-84605777 | Msa1221120:CDS | 35.0% |
| CCTGAGAGAGAAAATACTTA+AGG | - | chr8_1:84605792-84605811 | None:intergenic | 35.0% | |
| ! | CCTTAAGTATTTTCTCTCTC+AGG | + | chr8_1:84605789-84605808 | Msa1221120:CDS | 35.0% |
| ! | AGTATTTTCTCTCTCAGGTA+TGG | + | chr8_1:84605794-84605813 | Msa1221120:intron | 35.0% |
| ! | ATGCTAAAAACACTAGCCTA+TGG | - | chr8_1:84605902-84605921 | None:intergenic | 35.0% |
| ATCTCATTGAAGTCAGTAAC+GGG | - | chr8_1:84605983-84606002 | None:intergenic | 35.0% | |
| CATAAATGCACTCAAGGAAA+TGG | - | chr8_1:84606012-84606031 | None:intergenic | 35.0% | |
| GATGAACATAAATGCACTCA+AGG | - | chr8_1:84606018-84606037 | None:intergenic | 35.0% | |
| TAATAAACCCAGACTCAGAT+AGG | + | chr8_1:84606107-84606126 | Msa1221120:intron | 35.0% | |
| ACATAAATACATACCTCAGC+CGG | + | chr8_1:84606300-84606319 | Msa1221120:intron | 35.0% | |
| ! | CTGCTGCAGTAAATTGATTT+AGG | - | chr8_1:84606351-84606370 | None:intergenic | 35.0% |
| GTGATAATATGTTGTACTGC+AGG | - | chr8_1:84606461-84606480 | None:intergenic | 35.0% | |
| !! | AAAAGTCGTGGGTTTGTTAA+AGG | + | chr8_1:84606577-84606596 | Msa1221120:intron | 35.0% |
| ATAAGTCCATGTCTTTAGGT+GGG | - | chr8_1:84606643-84606662 | None:intergenic | 35.0% | |
| TATAAGTCCATGTCTTTAGG+TGG | - | chr8_1:84606644-84606663 | None:intergenic | 35.0% | |
| ! | GTCTGATGTTTTATGGTGTT+TGG | - | chr8_1:84606756-84606775 | None:intergenic | 35.0% |
| ! | GCTCTTTGTCTGATGTTTTA+TGG | - | chr8_1:84606763-84606782 | None:intergenic | 35.0% |
| !! | TTGAGCTTGATAACCTTTTG+TGG | - | chr8_1:84606918-84606937 | None:intergenic | 35.0% |
| !! | ACTTACTTGATTTGGTGGAA+TGG | - | chr8_1:84606942-84606961 | None:intergenic | 35.0% |
| !! | ACTTTTTCTCTGTAGTTCTC+CGG | + | chr8_1:84607016-84607035 | Msa1221120:intron | 35.0% |
| AGAGTTAAGTTAGGATTACC+TGG | + | chr8_1:84607226-84607245 | Msa1221120:intron | 35.0% | |
| GAGTTAAGTTAGGATTACCT+GGG | + | chr8_1:84607227-84607246 | Msa1221120:intron | 35.0% | |
| ! | TTGTGTTTTTCGTACTGTCT+AGG | - | chr8_1:84607259-84607278 | None:intergenic | 35.0% |
| GTTAATAGCCTTCTTGAACT+TGG | + | chr8_1:84607282-84607301 | Msa1221120:intron | 35.0% | |
| AAGGTGAATGAGCAAAAAGT+TGG | + | chr8_1:84607305-84607324 | Msa1221120:intron | 35.0% | |
| GAATCTATTGCGAACAATCT+TGG | + | chr8_1:84607772-84607791 | Msa1221120:CDS | 35.0% | |
| GAACAATCTTGGAGTTTCTT+TGG | + | chr8_1:84607783-84607802 | Msa1221120:CDS | 35.0% | |
| TTGGACAACATGATAAGTGA+GGG | - | chr8_1:84607864-84607883 | None:intergenic | 35.0% | |
| CACTATAAGATATGTTCCGA+CGG | + | chr8_1:84607973-84607992 | Msa1221120:CDS | 35.0% | |
| AGGCAAAGTAGAGCATATTA+AGG | - | chr8_1:84608031-84608050 | None:intergenic | 35.0% | |
| ACAGGTACGCATAAAAACTT+AGG | - | chr8_1:84608051-84608070 | None:intergenic | 35.0% | |
| TACCTGTGATTCTACATATG+CGG | + | chr8_1:84608064-84608083 | Msa1221120:three_prime_UTR | 35.0% | |
| ATTCTACATATGCGGACATA+AGG | + | chr8_1:84608072-84608091 | Msa1221120:three_prime_UTR | 35.0% | |
| ATAAGGAAAAGCTGTAGATC+TGG | + | chr8_1:84608089-84608108 | Msa1221120:three_prime_UTR | 35.0% | |
| AATGCATCTGTTGTGTAAAC+GGG | + | chr8_1:84608214-84608233 | Msa1221120:three_prime_UTR | 35.0% | |
| AAATCGGGGAAGAAAAATGG+CGG | + | chr8_1:84604191-84604210 | Msa1221120:five_prime_UTR | 40.0% | |
| AGCGTGTCTAATTGATGTTG+CGG | - | chr8_1:84604441-84604460 | None:intergenic | 40.0% | |
| CAACATCAATTAGACACGCT+AGG | + | chr8_1:84604441-84604460 | Msa1221120:intron | 40.0% | |
| AATTAGACACGCTAGGGTTA+GGG | + | chr8_1:84604448-84604467 | Msa1221120:intron | 40.0% | |
| CATCACTTGATTGAAGAGCA+TGG | - | chr8_1:84604586-84604605 | None:intergenic | 40.0% | |
| AGAACCGGTCTTACTATTGA+CGG | + | chr8_1:84604608-84604627 | Msa1221120:CDS | 40.0% | |
| AACACCGTCAATAGTAAGAC+CGG | - | chr8_1:84604615-84604634 | None:intergenic | 40.0% | |
| CAAAAACTCGTCGTTCACAA+AGG | - | chr8_1:84604895-84604914 | None:intergenic | 40.0% | |
| ! | ACGAGTTTTTGTCTACTTGC+AGG | + | chr8_1:84604904-84604923 | Msa1221120:intron | 40.0% |
| GGCAACATACAATCCTGTAA+AGG | - | chr8_1:84604984-84605003 | None:intergenic | 40.0% | |
| AAGTAAGGATAGGAATAGGC+TGG | + | chr8_1:84605067-84605086 | Msa1221120:intron | 40.0% | |
| TTTGTTAAGTCTAGGTCGGT+CGG | - | chr8_1:84605094-84605113 | None:intergenic | 40.0% | |
| ! | GGTGTTTGTTAAGTCTAGGT+CGG | - | chr8_1:84605098-84605117 | None:intergenic | 40.0% |
| AACAAACACCAAACATGGCT+TGG | + | chr8_1:84605108-84605127 | Msa1221120:intron | 40.0% | |
| GATAGGGATGAGAATAAGTC+AGG | - | chr8_1:84605290-84605309 | None:intergenic | 40.0% | |
| CTCATCCCTATCTGTAAGTA+TGG | + | chr8_1:84605298-84605317 | Msa1221120:intron | 40.0% | |
| ! | AGGGGGCAACTACAATTTTA+CGG | - | chr8_1:84605494-84605513 | None:intergenic | 40.0% |
| !!! | CCCCCTCCTTTTATTTTGAA+TGG | + | chr8_1:84605508-84605527 | Msa1221120:intron | 40.0% |
| TCATCTGCTAGCAAAACAAC+AGG | - | chr8_1:84605926-84605945 | None:intergenic | 40.0% | |
| ! | AGCCATGCAACGATTTTGTT+AGG | + | chr8_1:84606133-84606152 | Msa1221120:intron | 40.0% |
| ! | AGTGTGAATTTTGTGGTGGT+TGG | - | chr8_1:84606185-84606204 | None:intergenic | 40.0% |
| !!! | CCTGTTTCATGTTTTGGGTT+GGG | - | chr8_1:84606271-84606290 | None:intergenic | 40.0% |
| !! | ACCTGTTTCATGTTTTGGGT+TGG | - | chr8_1:84606272-84606291 | None:intergenic | 40.0% |
| AACATCTTGCAAAGTCTGAC+AGG | - | chr8_1:84606423-84606442 | None:intergenic | 40.0% | |
| ! | AGTGCTGGATCATGCTAATT+TGG | - | chr8_1:84606512-84606531 | None:intergenic | 40.0% |
| ! | TGTTTTATGGTGTTTGGCCT+AGG | - | chr8_1:84606750-84606769 | None:intergenic | 40.0% |
| GCAGTGCTTTGTATGGAATT+GGG | - | chr8_1:84606896-84606915 | None:intergenic | 40.0% | |
| ! | TTTTGTGGCAGTGCTTTGTA+TGG | - | chr8_1:84606903-84606922 | None:intergenic | 40.0% |
| !! | ATACAAAGCACTGCCACAAA+AGG | + | chr8_1:84606902-84606921 | Msa1221120:CDS | 40.0% |
| !! | GGTTGACTTACTTGATTTGG+TGG | - | chr8_1:84606947-84606966 | None:intergenic | 40.0% |
| !! | GAAAAAGTACTGAACCAGTG+AGG | - | chr8_1:84607004-84607023 | None:intergenic | 40.0% |
| !! | TCAGAAGAGTGTTCATGACT+TGG | + | chr8_1:84607054-84607073 | Msa1221120:CDS | 40.0% |
| ATAGCCTTCTTGAACTTGGA+AGG | + | chr8_1:84607286-84607305 | Msa1221120:intron | 40.0% | |
| TTCACCTTCCAAGTTCAAGA+AGG | - | chr8_1:84607293-84607312 | None:intergenic | 40.0% | |
| TTACTGATGTTTCAGGGCAA+TGG | + | chr8_1:84607732-84607751 | Msa1221120:intron | 40.0% | |
| AACATGATAAGTGAGGGAGA+GGG | - | chr8_1:84607858-84607877 | None:intergenic | 40.0% | |
| CTTGGACAACATGATAAGTG+AGG | - | chr8_1:84607865-84607884 | None:intergenic | 40.0% | |
| CAGGTCTGCAAAACAAGATA+AGG | - | chr8_1:84607903-84607922 | None:intergenic | 40.0% | |
| GCTATCTATCGCTAGTTCAA+GGG | - | chr8_1:84608185-84608204 | None:intergenic | 40.0% | |
| TGCTATCTATCGCTAGTTCA+AGG | - | chr8_1:84608186-84608205 | None:intergenic | 40.0% | |
| ! | ACGGGTTTTTCTCAGATTGT+TGG | + | chr8_1:84608232-84608251 | Msa1221120:three_prime_UTR | 40.0% |
| AATCGGGGAAGAAAAATGGC+GGG | + | chr8_1:84604192-84604211 | Msa1221120:five_prime_UTR | 45.0% | |
| GAACTGAGAAGAACCTTGGA+GGG | - | chr8_1:84604387-84604406 | None:intergenic | 45.0% | |
| AGAACTGAGAAGAACCTTGG+AGG | - | chr8_1:84604388-84604407 | None:intergenic | 45.0% | |
| GTGAGAACTGAGAAGAACCT+TGG | - | chr8_1:84604391-84604410 | None:intergenic | 45.0% | |
| CAATTAGACACGCTAGGGTT+AGG | + | chr8_1:84604447-84604466 | Msa1221120:intron | 45.0% | |
| TTGATCTGCTTGATCGTCAG+CGG | - | chr8_1:84604563-84604582 | None:intergenic | 45.0% | |
| GGTCTTACTATTGACGGTGT+TGG | + | chr8_1:84604614-84604633 | Msa1221120:CDS | 45.0% | |
| TCTGTCCAGGTTACTCTTGT+TGG | + | chr8_1:84604712-84604731 | Msa1221120:intron | 45.0% | |
| TCCAGGTTACTCTTGTTGGT+AGG | + | chr8_1:84604716-84604735 | Msa1221120:intron | 45.0% | |
| CCAGGTTACTCTTGTTGGTA+GGG | + | chr8_1:84604717-84604736 | Msa1221120:intron | 45.0% | |
| GGTAGGGTTTGCAACAAATC+TGG | + | chr8_1:84604733-84604752 | Msa1221120:CDS | 45.0% | |
| TTTGTACTTGACGATGGCAC+TGG | + | chr8_1:84604775-84604794 | Msa1221120:CDS | 45.0% | |
| GTGTTAGTCCAAGCCATGTT+TGG | - | chr8_1:84605119-84605138 | None:intergenic | 45.0% | |
| ! | TGGCTTGGACTAACACTTCA+AGG | + | chr8_1:84605123-84605142 | Msa1221120:intron | 45.0% |
| GGACTAACACTTCAAGGCAT+AGG | + | chr8_1:84605129-84605148 | Msa1221120:intron | 45.0% | |
| TAAGTCAGGCTAACCGACAA+GGG | - | chr8_1:84605276-84605295 | None:intergenic | 45.0% | |
| ATAAGTCAGGCTAACCGACA+AGG | - | chr8_1:84605277-84605296 | None:intergenic | 45.0% | |
| ! | GGGGGCAACTACAATTTTAC+GGG | - | chr8_1:84605493-84605512 | None:intergenic | 45.0% |
| AGCTCACTTGGTTGAGCAAA+GGG | - | chr8_1:84605613-84605632 | None:intergenic | 45.0% | |
| TAGCTCACTTGGTTGAGCAA+AGG | - | chr8_1:84605614-84605633 | None:intergenic | 45.0% | |
| AATGCACTCAAGGAAATGGC+TGG | - | chr8_1:84606008-84606027 | None:intergenic | 45.0% | |
| GGCTAATCCTATCTGAGTCT+GGG | - | chr8_1:84606117-84606136 | None:intergenic | 45.0% | |
| TGGCTAATCCTATCTGAGTC+TGG | - | chr8_1:84606118-84606137 | None:intergenic | 45.0% | |
| GGCCTAACAAAATCGTTGCA+TGG | - | chr8_1:84606138-84606157 | None:intergenic | 45.0% | |
| CCCAACCCAAAACATGAAAC+AGG | + | chr8_1:84606268-84606287 | Msa1221120:intron | 45.0% | |
| TGGGTATGCTGCCACAAATA+TGG | - | chr8_1:84606845-84606864 | None:intergenic | 45.0% | |
| ATATTTGTGGCAGCATACCC+AGG | + | chr8_1:84606844-84606863 | Msa1221120:intron | 45.0% | |
| ! | TTGGGAGCATGTTGCTGATT+GGG | - | chr8_1:84606878-84606897 | None:intergenic | 45.0% |
| ! | ATTGGGAGCATGTTGCTGAT+TGG | - | chr8_1:84606879-84606898 | None:intergenic | 45.0% |
| GGCAGTGCTTTGTATGGAAT+TGG | - | chr8_1:84606897-84606916 | None:intergenic | 45.0% | |
| TTCTCCGGTCAGCAGAATAA+TGG | + | chr8_1:84607031-84607050 | Msa1221120:CDS | 45.0% | |
| CTGACCATTATTCTGCTGAC+CGG | - | chr8_1:84607038-84607057 | None:intergenic | 45.0% | |
| !!! | TTTTGGCTCTTCCCACAAAC+AGG | + | chr8_1:84607086-84607105 | Msa1221120:CDS | 45.0% |
| TGATGTTTCAGGGCAATGGA+GGG | + | chr8_1:84607736-84607755 | Msa1221120:intron | 45.0% | |
| CAACATGATAAGTGAGGGAG+AGG | - | chr8_1:84607859-84607878 | None:intergenic | 45.0% | |
| AGACCTGCTCTTGATGTTCT+TGG | + | chr8_1:84607916-84607935 | Msa1221120:intron | 45.0% | |
| CTACCAAGAACATCAAGAGC+AGG | - | chr8_1:84607922-84607941 | None:intergenic | 45.0% | |
| !! | CTTGATGTTCTTGGTAGCGA+AGG | + | chr8_1:84607925-84607944 | Msa1221120:CDS | 45.0% |
| AGCGAAGGTCTCGTTTATGA+AGG | + | chr8_1:84607940-84607959 | Msa1221120:CDS | 45.0% | |
| GTCCGCATATGTAGAATCAC+AGG | - | chr8_1:84608069-84608088 | None:intergenic | 45.0% | |
| !! | ATATTTAATATCAAAATAAT+TGG | - | chr8_1:84604221-84604240 | None:intergenic | 5.0% |
| ! | GTTACCGTCGAACTGACTCA+TGG | - | chr8_1:84604298-84604317 | None:intergenic | 50.0% |
| ATGCCTTCTCAGGCCAATCA+AGG | + | chr8_1:84604342-84604361 | Msa1221120:CDS | 50.0% | |
| AGAGGATTCACCGCCTTGAT+TGG | - | chr8_1:84604358-84604377 | None:intergenic | 50.0% | |
| ACACGCTAGGGTTAGGGTTT+AGG | + | chr8_1:84604454-84604473 | Msa1221120:intron | 50.0% | |
| CACGCTAGGGTTAGGGTTTA+GGG | + | chr8_1:84604455-84604474 | Msa1221120:intron | 50.0% | |
| CCCTACCAACAAGAGTAACC+TGG | - | chr8_1:84604720-84604739 | None:intergenic | 50.0% | |
| TCACGAACCTGCTGATGCAA+TGG | + | chr8_1:84604929-84604948 | Msa1221120:CDS | 50.0% | |
| ! | TAACTAGTTTGGGAGGGGGA+GGG | - | chr8_1:84605638-84605657 | None:intergenic | 50.0% |
| ! | AGGGGGTAACTAGTTTGGGA+GGG | - | chr8_1:84605644-84605663 | None:intergenic | 50.0% |
| ! | CCAGAGGGGGTAACTAGTTT+GGG | - | chr8_1:84605648-84605667 | None:intergenic | 50.0% |
| ACCAGAGGGGGTAACTAGTT+TGG | - | chr8_1:84605649-84605668 | None:intergenic | 50.0% | |
| ATTTGACAGGGAATCGGCAC+CGG | - | chr8_1:84606322-84606341 | None:intergenic | 50.0% | |
| TTGCAAAGTCTGACAGGCCA+AGG | - | chr8_1:84606417-84606436 | None:intergenic | 50.0% | |
| CGCAGTACTTTGCTTAGTGC+TGG | - | chr8_1:84606527-84606546 | None:intergenic | 50.0% | |
| !! | GCACTAAGCAAAGTACTGCG+AGG | + | chr8_1:84606527-84606546 | Msa1221120:intron | 50.0% |
| ! | TGGGAGCATGTTGCTGATTG+GGG | - | chr8_1:84606877-84606896 | None:intergenic | 50.0% |
| TACTGTCTAGGTCAAGTCCC+AGG | - | chr8_1:84607247-84607266 | None:intergenic | 50.0% | |
| CTGATGTTTCAGGGCAATGG+AGG | + | chr8_1:84607735-84607754 | Msa1221120:intron | 50.0% | |
| GATGTTTCAGGGCAATGGAG+GGG | + | chr8_1:84607737-84607756 | Msa1221120:intron | 50.0% | |
| ATGTTTCAGGGCAATGGAGG+GGG | + | chr8_1:84607738-84607757 | Msa1221120:intron | 50.0% | |
| ATAAGTGAGGGAGAGGGAGA+TGG | - | chr8_1:84607852-84607871 | None:intergenic | 50.0% | |
| TGTTCCGACGGTTGACATCT+TGG | + | chr8_1:84607985-84608004 | Msa1221120:exon | 50.0% | |
| GGCACCATGAGTCAGTTCGA+CGG | + | chr8_1:84604291-84604310 | Msa1221120:exon | 55.0% | |
| CCTTCTCAGGCCAATCAAGG+CGG | + | chr8_1:84604345-84604364 | Msa1221120:CDS | 55.0% | |
| ATCCTCTCTCACTCCCTCCA+AGG | + | chr8_1:84604371-84604390 | Msa1221120:CDS | 55.0% | |
| AACCTTGGAGGGAGTGAGAG+AGG | - | chr8_1:84604376-84604395 | None:intergenic | 55.0% | |
| ACCTGCTGATGCAATGGCAG+TGG | + | chr8_1:84604935-84604954 | Msa1221120:CDS | 55.0% | |
| TCCACTGCCATTGCATCAGC+AGG | - | chr8_1:84604939-84604958 | None:intergenic | 55.0% | |
| ! | AACTAGTTTGGGAGGGGGAG+GGG | - | chr8_1:84605637-84605656 | None:intergenic | 55.0% |
| ! | GTAACTAGTTTGGGAGGGGG+AGG | - | chr8_1:84605639-84605658 | None:intergenic | 55.0% |
| ! | GGGGTAACTAGTTTGGGAGG+GGG | - | chr8_1:84605642-84605661 | None:intergenic | 55.0% |
| ! | GGGGGTAACTAGTTTGGGAG+GGG | - | chr8_1:84605643-84605662 | None:intergenic | 55.0% |
| ! | GAGGGGGTAACTAGTTTGGG+AGG | - | chr8_1:84605645-84605664 | None:intergenic | 55.0% |
| CCCAAACTAGTTACCCCCTC+TGG | + | chr8_1:84605645-84605664 | Msa1221120:intron | 55.0% | |
| GCTGCACCCACCTAAAGACA+TGG | + | chr8_1:84606634-84606653 | Msa1221120:intron | 55.0% | |
| ! | CTGATTGGGGATGCTAGCCT+GGG | - | chr8_1:84606864-84606883 | None:intergenic | 55.0% |
| TGTTTCAGGGCAATGGAGGG+GGG | + | chr8_1:84607739-84607758 | Msa1221120:intron | 55.0% | |
| TCCGACGGTTGACATCTTGG+TGG | + | chr8_1:84607988-84608007 | Msa1221120:exon | 55.0% | |
| GCCACCAAGATGTCAACCGT+CGG | - | chr8_1:84607992-84608011 | None:intergenic | 55.0% | |
| ! | GGTTGACATCTTGGTGGCAG+AGG | + | chr8_1:84607994-84608013 | Msa1221120:exon | 55.0% |
| ! | GACGGTAACGCCGCTTTCTC+CGG | + | chr8_1:84604309-84604328 | Msa1221120:CDS | 60.0% |
| ! | AGAAGGCATGAAACCGCCGC+CGG | - | chr8_1:84604331-84604350 | None:intergenic | 60.0% |
| CGGCGGTTTCATGCCTTCTC+AGG | + | chr8_1:84604332-84604351 | Msa1221120:CDS | 60.0% | |
| !! | CCGCCTTGATTGGCCTGAGA+AGG | - | chr8_1:84604348-84604367 | None:intergenic | 60.0% |
| GCTGATTGGGGATGCTAGCC+TGG | - | chr8_1:84606865-84606884 | None:intergenic | 60.0% | |
| AGGGAGAGGGAGATGGAGAG+GGG | - | chr8_1:84607845-84607864 | None:intergenic | 60.0% | |
| GAGGGAGAGGGAGATGGAGA+GGG | - | chr8_1:84607846-84607865 | None:intergenic | 60.0% | |
| TGAGGGAGAGGGAGATGGAG+AGG | - | chr8_1:84607847-84607866 | None:intergenic | 60.0% | |
| ! | GGTAACGCCGCTTTCTCCGG+CGG | + | chr8_1:84604312-84604331 | Msa1221120:CDS | 65.0% |
| GAAACCGCCGCCGGAGAAAG+CGG | - | chr8_1:84604322-84604341 | None:intergenic | 65.0% | |
| AGGGGGAGGGGTAGCTCACT+TGG | - | chr8_1:84605625-84605644 | None:intergenic | 65.0% | |
| GAGGGAGATGGAGAGGGGGA+TGG | - | chr8_1:84607840-84607859 | None:intergenic | 65.0% | |
| GGGAGAGGGAGATGGAGAGG+GGG | - | chr8_1:84607844-84607863 | None:intergenic | 65.0% | |
| ! | AACGCCGCTTTCTCCGGCGG+CGG | + | chr8_1:84604315-84604334 | Msa1221120:CDS | 70.0% |
| !! | CAGGGAATCGGCACCGGCTG+AGG | - | chr8_1:84606316-84606335 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 84604154 | 84608323 | 84604154 | ID=Msa1221120;Name=Msa1221120 |
| chr8_1 | mRNA | 84604154 | 84608323 | 84604154 | ID=Msa1221120-mRNA-1;Parent=Msa1221120;Name=Msa1221120-mRNA-1;_AED=0.16;_eAED=0.16;_QI=143|1|1|1|1|1|10|324|276 |
| chr8_1 | exon | 84604154 | 84604392 | 84604154 | ID=Msa1221120-mRNA-1:exon:30371;Parent=Msa1221120-mRNA-1 |
| chr8_1 | exon | 84604536 | 84604646 | 84604536 | ID=Msa1221120-mRNA-1:exon:30372;Parent=Msa1221120-mRNA-1 |
| chr8_1 | exon | 84604721 | 84604818 | 84604721 | ID=Msa1221120-mRNA-1:exon:30373;Parent=Msa1221120-mRNA-1 |
| chr8_1 | exon | 84604926 | 84604967 | 84604926 | ID=Msa1221120-mRNA-1:exon:30374;Parent=Msa1221120-mRNA-1 |
| chr8_1 | exon | 84605733 | 84605810 | 84605733 | ID=Msa1221120-mRNA-1:exon:30375;Parent=Msa1221120-mRNA-1 |
| chr8_1 | exon | 84605979 | 84606057 | 84605979 | ID=Msa1221120-mRNA-1:exon:30376;Parent=Msa1221120-mRNA-1 |
| chr8_1 | exon | 84606857 | 84606955 | 84606857 | ID=Msa1221120-mRNA-1:exon:30377;Parent=Msa1221120-mRNA-1 |
| chr8_1 | exon | 84607031 | 84607107 | 84607031 | ID=Msa1221120-mRNA-1:exon:30378;Parent=Msa1221120-mRNA-1 |
| chr8_1 | exon | 84607747 | 84607815 | 84607747 | ID=Msa1221120-mRNA-1:exon:30379;Parent=Msa1221120-mRNA-1 |
| chr8_1 | exon | 84607918 | 84608323 | 84607918 | ID=Msa1221120-mRNA-1:exon:30380;Parent=Msa1221120-mRNA-1 |
| chr8_1 | five_prime_UTR | 84604154 | 84604296 | 84604154 | ID=Msa1221120-mRNA-1:five_prime_utr;Parent=Msa1221120-mRNA-1 |
| chr8_1 | CDS | 84604297 | 84604392 | 84604297 | ID=Msa1221120-mRNA-1:cds;Parent=Msa1221120-mRNA-1 |
| chr8_1 | CDS | 84604536 | 84604646 | 84604536 | ID=Msa1221120-mRNA-1:cds;Parent=Msa1221120-mRNA-1 |
| chr8_1 | CDS | 84604721 | 84604818 | 84604721 | ID=Msa1221120-mRNA-1:cds;Parent=Msa1221120-mRNA-1 |
| chr8_1 | CDS | 84604926 | 84604967 | 84604926 | ID=Msa1221120-mRNA-1:cds;Parent=Msa1221120-mRNA-1 |
| chr8_1 | CDS | 84605733 | 84605810 | 84605733 | ID=Msa1221120-mRNA-1:cds;Parent=Msa1221120-mRNA-1 |
| chr8_1 | CDS | 84605979 | 84606057 | 84605979 | ID=Msa1221120-mRNA-1:cds;Parent=Msa1221120-mRNA-1 |
| chr8_1 | CDS | 84606857 | 84606955 | 84606857 | ID=Msa1221120-mRNA-1:cds;Parent=Msa1221120-mRNA-1 |
| chr8_1 | CDS | 84607031 | 84607107 | 84607031 | ID=Msa1221120-mRNA-1:cds;Parent=Msa1221120-mRNA-1 |
| chr8_1 | CDS | 84607747 | 84607815 | 84607747 | ID=Msa1221120-mRNA-1:cds;Parent=Msa1221120-mRNA-1 |
| chr8_1 | CDS | 84607918 | 84607999 | 84607918 | ID=Msa1221120-mRNA-1:cds;Parent=Msa1221120-mRNA-1 |
| chr8_1 | three_prime_UTR | 84608000 | 84608323 | 84608000 | ID=Msa1221120-mRNA-1:three_prime_utr;Parent=Msa1221120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
