Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1265450 | XP_003610102.1 | 87.681 | 276 | 32 | 2 | 2 | 276 | 4 | 278 | 6.39e-177 | 498 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1265450 | sp|Q8LFJ8|RFA2B_ARATH | 44.737 | 266 | 140 | 3 | 4 | 266 | 6 | 267 | 3.42e-75 | 233 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015570 | Msa1265450 | 0.841832 | 3.741734e-58 | -8.615850e-47 |
| Msa0027280 | Msa1265450 | 0.803884 | 2.816578e-49 | -8.615850e-47 |
| Msa0034830 | Msa1265450 | 0.804679 | 1.923917e-49 | -8.615850e-47 |
| Msa0035380 | Msa1265450 | 0.804356 | 2.246835e-49 | -8.615850e-47 |
| Msa0042640 | Msa1265450 | 0.834380 | 3.099907e-56 | -8.615850e-47 |
| Msa0062340 | Msa1265450 | 0.801914 | 7.192062e-49 | -8.615850e-47 |
| Msa0067060 | Msa1265450 | 0.828279 | 9.820645e-55 | -8.615850e-47 |
| Msa0075530 | Msa1265450 | 0.821744 | 3.431591e-53 | -8.615850e-47 |
| Msa0094570 | Msa1265450 | 0.981679 | 3.525471e-153 | -8.615850e-47 |
| Msa0094790 | Msa1265450 | 0.845230 | 4.623751e-59 | -8.615850e-47 |
| Msa0102240 | Msa1265450 | 0.806128 | 9.559614e-50 | -8.615850e-47 |
| Msa0112670 | Msa1265450 | 0.815306 | 9.890029e-52 | -8.615850e-47 |
| Msa0612520 | Msa1265450 | 0.826041 | 3.371512e-54 | -8.615850e-47 |
| Msa0619710 | Msa1265450 | 0.824862 | 6.411770e-54 | -8.615850e-47 |
| Msa0621710 | Msa1265450 | 0.802464 | 5.541251e-49 | -8.615850e-47 |
| Msa0625620 | Msa1265450 | 0.841457 | 4.698543e-58 | -8.615850e-47 |
| Msa0648760 | Msa1265450 | 0.806191 | 9.273061e-50 | -8.615850e-47 |
| Msa0657210 | Msa1265450 | 0.800480 | 1.413372e-48 | -8.615850e-47 |
| Msa0662820 | Msa1265450 | 0.812599 | 3.909643e-51 | -8.615850e-47 |
| Msa0717900 | Msa1265450 | 0.802783 | 4.761724e-49 | -8.615850e-47 |
| Msa0719270 | Msa1265450 | 0.816279 | 6.001695e-52 | -8.615850e-47 |
| Msa0719750 | Msa1265450 | 0.803439 | 3.485055e-49 | -8.615850e-47 |
| Msa0734250 | Msa1265450 | 0.802395 | 5.726065e-49 | -8.615850e-47 |
| Msa0737020 | Msa1265450 | 0.827396 | 1.601065e-54 | -8.615850e-47 |
| Msa0740710 | Msa1265450 | 0.811429 | 7.032305e-51 | -8.615850e-47 |
| Msa0745140 | Msa1265450 | 0.802667 | 5.031774e-49 | -8.615850e-47 |
| Msa0760970 | Msa1265450 | 0.816362 | 5.749872e-52 | -8.615850e-47 |
| Msa0776640 | Msa1265450 | 0.805375 | 1.376066e-49 | -8.615850e-47 |
| Msa0778600 | Msa1265450 | 0.862668 | 4.306865e-64 | -8.615850e-47 |
| Msa0780910 | Msa1265450 | 0.805039 | 1.617735e-49 | -8.615850e-47 |
| Msa0815970 | Msa1265450 | 0.834591 | 2.744013e-56 | -8.615850e-47 |
| Msa0821160 | Msa1265450 | 0.803994 | 2.672533e-49 | -8.615850e-47 |
| Msa0840520 | Msa1265450 | 0.805817 | 1.111426e-49 | -8.615850e-47 |
| Msa0841050 | Msa1265450 | 0.803983 | 2.686560e-49 | -8.615850e-47 |
| Msa0841590 | Msa1265450 | 0.816266 | 6.042575e-52 | -8.615850e-47 |
| Msa0140130 | Msa1265450 | 0.827267 | 1.719530e-54 | -8.615850e-47 |
| Msa0140380 | Msa1265450 | 0.807190 | 5.706086e-50 | -8.615850e-47 |
| Msa0141640 | Msa1265450 | 0.829558 | 4.813569e-55 | -8.615850e-47 |
| Msa0156050 | Msa1265450 | 0.835977 | 1.225620e-56 | -8.615850e-47 |
| Msa0156090 | Msa1265450 | 0.833741 | 4.479815e-56 | -8.615850e-47 |
| Msa0178450 | Msa1265450 | 0.834429 | 3.013382e-56 | -8.615850e-47 |
| Msa1228580 | Msa1265450 | 0.847647 | 1.013103e-59 | -8.615850e-47 |
| Msa1244240 | Msa1265450 | 0.812342 | 4.449560e-51 | -8.615850e-47 |
| Msa1252790 | Msa1265450 | 0.816969 | 4.203168e-52 | -8.615850e-47 |
| Msa1254540 | Msa1265450 | 0.814020 | 1.905361e-51 | -8.615850e-47 |
| Msa1265450 | Msa1267930 | 0.800284 | 1.549195e-48 | -8.615850e-47 |
| Msa1265450 | Msa1279120 | 0.821866 | 3.214634e-53 | -8.615850e-47 |
| Msa1265450 | Msa1294280 | 0.800449 | 1.434045e-48 | -8.615850e-47 |
| Msa1265450 | Msa1300460 | 0.822150 | 2.762455e-53 | -8.615850e-47 |
| Msa1265450 | Msa1308850 | 0.838261 | 3.195010e-57 | -8.615850e-47 |
| Msa1265450 | Msa1364410 | 0.816932 | 4.284934e-52 | -8.615850e-47 |
| Msa1265450 | Msa1368750 | 0.815637 | 8.346357e-52 | -8.615850e-47 |
| Msa1265450 | Msa1374790 | 0.812310 | 4.522067e-51 | -8.615850e-47 |
| Msa1265450 | Msa1384150 | 0.813663 | 2.283628e-51 | -8.615850e-47 |
| Msa1265450 | Msa1406720 | 0.812543 | 4.021142e-51 | -8.615850e-47 |
| Msa1265450 | Msa1409410 | 0.809327 | 1.998950e-50 | -8.615850e-47 |
| Msa1265450 | Msa1417370 | 0.832557 | 8.830051e-56 | -8.615850e-47 |
| Msa1265450 | Msa1434640 | 0.805475 | 1.311491e-49 | -8.615850e-47 |
| Msa1265450 | Msa1435960 | 0.832307 | 1.018851e-55 | -8.615850e-47 |
| Msa1265450 | Msa1436620 | 0.808788 | 2.606821e-50 | -8.615850e-47 |
| Msa1265450 | Msa1450190 | 0.810476 | 1.130909e-50 | -8.615850e-47 |
| Msa1265450 | Msa1451820 | 0.809904 | 1.502231e-50 | -8.615850e-47 |
| Msa1265450 | Msa1454010 | 0.827729 | 1.331984e-54 | -8.615850e-47 |
| Msa1265450 | Msa1457840 | 0.806670 | 7.350674e-50 | -8.615850e-47 |
| Msa0367690 | Msa1265450 | 0.805035 | 1.621338e-49 | -8.615850e-47 |
| Msa0373500 | Msa1265450 | 0.819297 | 1.250417e-52 | -8.615850e-47 |
| Msa0383000 | Msa1265450 | 0.807626 | 4.609796e-50 | -8.615850e-47 |
| Msa0415450 | Msa1265450 | 0.823085 | 1.674304e-53 | -8.615850e-47 |
| Msa0420670 | Msa1265450 | 0.801642 | 8.175732e-49 | -8.615850e-47 |
| Msa0432010 | Msa1265450 | 0.815720 | 8.001381e-52 | -8.615850e-47 |
| Msa0433150 | Msa1265450 | 0.805442 | 1.332158e-49 | -8.615850e-47 |
| Msa0456670 | Msa1265450 | 0.813006 | 3.184377e-51 | -8.615850e-47 |
| Msa0457570 | Msa1265450 | 0.819070 | 1.408310e-52 | -8.615850e-47 |
| Msa0460070 | Msa1265450 | 0.825883 | 3.677256e-54 | -8.615850e-47 |
| Msa0466520 | Msa1265450 | 0.812459 | 4.195977e-51 | -8.615850e-47 |
| Msa0467170 | Msa1265450 | 0.814088 | 1.841104e-51 | -8.615850e-47 |
| Msa0467330 | Msa1265450 | 0.811197 | 7.895380e-51 | -8.615850e-47 |
| Msa0468620 | Msa1265450 | 0.832887 | 7.312331e-56 | -8.615850e-47 |
| Msa1060900 | Msa1265450 | 0.805077 | 1.588934e-49 | -8.615850e-47 |
| Msa1082380 | Msa1265450 | 0.803527 | 3.341607e-49 | -8.615850e-47 |
| Msa0284800 | Msa1265450 | 0.813122 | 3.003373e-51 | -8.615850e-47 |
| Msa1124470 | Msa1265450 | 0.801754 | 7.757496e-49 | -8.615850e-47 |
| Msa1148630 | Msa1265450 | 0.812872 | 3.407064e-51 | -8.615850e-47 |
| Msa1159590 | Msa1265450 | 0.814334 | 1.624482e-51 | -8.615850e-47 |
| Msa1183910 | Msa1265450 | 0.828112 | 1.077492e-54 | -8.615850e-47 |
| Msa1190390 | Msa1265450 | 0.821684 | 3.542331e-53 | -8.615850e-47 |
| Msa1192560 | Msa1265450 | 0.851634 | 7.808760e-61 | -8.615850e-47 |
| Msa1192590 | Msa1265450 | 0.846011 | 2.838904e-59 | -8.615850e-47 |
| Msa1201170 | Msa1265450 | 0.812671 | 3.769537e-51 | -8.615850e-47 |
| Msa1215690 | Msa1265450 | 0.804292 | 2.317181e-49 | -8.615850e-47 |
| Msa1221120 | Msa1265450 | 0.997572 | 5.618207e-245 | -8.615850e-47 |
| Msa0507920 | Msa1265450 | 0.815233 | 1.026647e-51 | -8.615850e-47 |
| Msa0512530 | Msa1265450 | 0.804088 | 2.555358e-49 | -8.615850e-47 |
| Msa0513080 | Msa1265450 | 0.808219 | 3.449246e-50 | -8.615850e-47 |
| Msa0514500 | Msa1265450 | 0.830266 | 3.235051e-55 | -8.615850e-47 |
| Msa0520870 | Msa1265450 | 0.817436 | 3.300397e-52 | -8.615850e-47 |
| Msa0527850 | Msa1265450 | 0.825893 | 3.656004e-54 | -8.615850e-47 |
| Msa0531960 | Msa1265450 | 0.809978 | 1.448093e-50 | -8.615850e-47 |
| Msa0546480 | Msa1265450 | 0.800822 | 1.203459e-48 | -8.615850e-47 |
| Msa0580810 | Msa1265450 | 0.802665 | 5.037172e-49 | -8.615850e-47 |
| Msa0582460 | Msa1265450 | 0.829529 | 4.892275e-55 | -8.615850e-47 |
| Msa0586200 | Msa1265450 | 0.831480 | 1.629846e-55 | -8.615850e-47 |
| Msa0865420 | Msa1265450 | 0.811250 | 7.692077e-51 | -8.615850e-47 |
| Msa0866530 | Msa1265450 | 0.858753 | 6.634671e-63 | -8.615850e-47 |
| Msa0879920 | Msa1265450 | 0.817036 | 4.059997e-52 | -8.615850e-47 |
| Msa0945030 | Msa1265450 | 0.816935 | 4.279681e-52 | -8.615850e-47 |
| Msa0972740 | Msa1265450 | 0.812225 | 4.719592e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1265450 | MtrunA17_Chr4g0072301 | 87.681 | 276 | 32 | 2 | 2 | 276 | 4 | 278 | 0.0 | 498 |
| Msa1265450 | MtrunA17_Chr1g0148131 | 39.781 | 274 | 157 | 5 | 2 | 273 | 5 | 272 | 5.08e-66 | 207 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1265450 | AT3G02920.1 | 44.737 | 266 | 140 | 3 | 4 | 266 | 6 | 267 | 3.48e-76 | 233 |
| Msa1265450 | AT2G24490.1 | 41.606 | 274 | 153 | 5 | 2 | 271 | 5 | 275 | 1.03e-68 | 214 |
| Msa1265450 | AT2G24490.2 | 41.606 | 274 | 153 | 5 | 2 | 271 | 5 | 275 | 1.03e-68 | 214 |
| Msa1265450 | AT3G02920.3 | 46.875 | 224 | 112 | 3 | 4 | 224 | 6 | 225 | 4.42e-67 | 208 |
| Msa1265450 | AT3G02920.2 | 46.875 | 224 | 112 | 3 | 4 | 224 | 6 | 225 | 4.42e-67 | 208 |
Find 88 sgRNAs with CRISPR-Local
Find 287 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGACCTGCTCTTGATGTTCT+TGG | 0.266087 | 8_2:+69803055 | Msa1265450:intron |
| ATATTTAATATCAAAATAAT+TGG | 0.266733 | 8_2:-69799357 | None:intergenic |
| TCTATATAATTCGAAGTTAC+AGG | 0.284161 | 8_2:+69801175 | Msa1265450:CDS |
| GGAATGTATGTGCGTTTATA+TGG | 0.285958 | 8_2:+69800876 | Msa1265450:CDS |
| GAACAATCTTGGAGTTTCTT+TGG | 0.301777 | 8_2:+69802922 | Msa1265450:CDS |
| GCTGATTGGGGATGCTAGCC+TGG | 0.316731 | 8_2:-69802001 | None:intergenic |
| TTGGGAGCATGTTGCTGATT+GGG | 0.326890 | 8_2:-69802014 | None:intergenic |
| GAATCTATTGCGAACAATCT+TGG | 0.341410 | 8_2:+69802911 | Msa1265450:CDS |
| GGCAGTGCTTTGTATGGAAT+TGG | 0.344322 | 8_2:-69802033 | None:intergenic |
| TAATGCATCTGTTGTGTAAA+CGG | 0.354904 | 8_2:+69803352 | Msa1265450:three_prime_UTR |
| GGTAGGGTTTGCAACAAATC+TGG | 0.360046 | 8_2:+69799872 | Msa1265450:CDS |
| GAACAATCGAGTGTACTAAA+TGG | 0.372337 | 8_2:+69799936 | Msa1265450:CDS |
| TGTGTCCAGGTTACTCTTGT+TGG | 0.374874 | 8_2:+69799851 | Msa1265450:intron |
| TATGGTTGACTTACTTGATT+TGG | 0.375750 | 8_2:-69802086 | None:intergenic |
| AGGCAAAGTAGAGCATATTA+AGG | 0.395757 | 8_2:-69803167 | None:intergenic |
| GACGGTAACGCCGCTTTCTC+CGG | 0.395800 | 8_2:+69799448 | Msa1265450:CDS |
| CCTGAGAGAGAAAATACTTA+AGG | 0.400373 | 8_2:-69800928 | None:intergenic |
| TGTTCCGACGGTTGACATCT+TGG | 0.401459 | 8_2:+69803124 | Msa1265450:exon |
| ATTGGGAGCATGTTGCTGAT+TGG | 0.409358 | 8_2:-69802015 | None:intergenic |
| AATGCATCTGTTGTGTAAAC+GGG | 0.411134 | 8_2:+69803353 | Msa1265450:three_prime_UTR |
| CATAAATGCACTCAAGGAAA+TGG | 0.411902 | 8_2:-69801148 | None:intergenic |
| TGCTATCTATCGCTAGTTCA+AGG | 0.414089 | 8_2:-69803322 | None:intergenic |
| CGGCGGTTTCATGCCTTCTC+AGG | 0.416064 | 8_2:+69799471 | Msa1265450:CDS |
| TCTGTTCAATCACGGAAAAT+CGG | 0.416253 | 8_2:+69799409 | Msa1265450:five_prime_UTR |
| AGAGGATTCACCGCCTTGAT+TGG | 0.430570 | 8_2:-69799494 | None:intergenic |
| TCCAGGTTACTCTTGTTGGT+AGG | 0.435412 | 8_2:+69799855 | Msa1265450:intron |
| CCAGGTTACTCTTGTTGGTA+GGG | 0.435513 | 8_2:+69799856 | Msa1265450:intron |
| ATGTTTCAGGGCAATGGAGG+GGG | 0.447338 | 8_2:+69802877 | Msa1265450:intron |
| ATAAGGAAAAGCTGTAGATC+TGG | 0.459153 | 8_2:+69803228 | Msa1265450:three_prime_UTR |
| ATTCTACATATGCGGACATA+AGG | 0.460664 | 8_2:+69803211 | Msa1265450:three_prime_UTR |
| GCAGTGCTTTGTATGGAATT+GGG | 0.465281 | 8_2:-69802032 | None:intergenic |
| ACTTACTTGATTTGGTGGAA+TGG | 0.471859 | 8_2:-69802078 | None:intergenic |
| ATGCCTTCTCAGGCCAATCA+AGG | 0.473622 | 8_2:+69799481 | Msa1265450:CDS |
| ATCTCATTGAAGTCAGTAAC+GGG | 0.478767 | 8_2:-69801119 | None:intergenic |
| TTACTGATGTTTCAGGGCAA+TGG | 0.480244 | 8_2:+69802871 | Msa1265450:intron |
| AACGCCGCTTTCTCCGGCGG+CGG | 0.487082 | 8_2:+69799454 | Msa1265450:CDS |
| TCCACTGCCATTGCATCAGC+AGG | 0.490315 | 8_2:-69800075 | None:intergenic |
| CGTTTATATGGACAATTGAA+AGG | 0.493252 | 8_2:+69800888 | Msa1265450:CDS |
| TCGAAATTTCTGTTCAATCA+CGG | 0.494939 | 8_2:+69799401 | Msa1265450:five_prime_UTR |
| TTTGTACTTGACGATGGCAC+TGG | 0.500314 | 8_2:+69799914 | Msa1265450:CDS |
| GGTTGACTTACTTGATTTGG+TGG | 0.502710 | 8_2:-69802083 | None:intergenic |
| CCGCCTTGATTGGCCTGAGA+AGG | 0.504121 | 8_2:-69799484 | None:intergenic |
| TTCTCCGGTCAGCAGAATAA+TGG | 0.506082 | 8_2:+69802170 | Msa1265450:CDS |
| CAATCAAGTGATGATAGAAC+CGG | 0.507029 | 8_2:+69799732 | Msa1265450:CDS |
| TTTAAAATACACCTGTTTGT+GGG | 0.516085 | 8_2:-69802236 | None:intergenic |
| ATACAAAGCACTGCCACAAA+AGG | 0.519488 | 8_2:+69802041 | Msa1265450:CDS |
| GGTTGACATCTTGGTGGCAG+AGG | 0.522125 | 8_2:+69803133 | Msa1265450:exon |
| CTGATGTTTCAGGGCAATGG+AGG | 0.528490 | 8_2:+69802874 | Msa1265450:intron |
| CTGATTGGGGATGCTAGCCT+GGG | 0.532257 | 8_2:-69802000 | None:intergenic |
| ATCCTCTCTCACTCCCTCCA+AGG | 0.534425 | 8_2:+69799510 | Msa1265450:CDS |
| AACCTTGGAGGGAGTGAGAG+AGG | 0.538834 | 8_2:-69799512 | None:intergenic |
| TGATGTTTCAGGGCAATGGA+GGG | 0.541054 | 8_2:+69802875 | Msa1265450:intron |
| GATGAACATAAATGCACTCA+AGG | 0.548211 | 8_2:-69801154 | None:intergenic |
| CTTGATGTTCTTGGTAGCGA+AGG | 0.548492 | 8_2:+69803064 | Msa1265450:CDS |
| TCACGAACCTGCTGATGCAA+TGG | 0.548561 | 8_2:+69800068 | Msa1265450:CDS |
| GAAACCGCCGCCGGAGAAAG+CGG | 0.554313 | 8_2:-69799458 | None:intergenic |
| GTCCGCATATGTAGAATCAC+AGG | 0.556314 | 8_2:-69803205 | None:intergenic |
| GGTCTTACTATTGACGGTGT+TGG | 0.564776 | 8_2:+69799753 | Msa1265450:CDS |
| ACCTGCTGATGCAATGGCAG+TGG | 0.566074 | 8_2:+69800074 | Msa1265450:CDS |
| AGCGAAGGTCTCGTTTATGA+AGG | 0.568213 | 8_2:+69803079 | Msa1265450:CDS |
| AATGCACTCAAGGAAATGGC+TGG | 0.568941 | 8_2:-69801144 | None:intergenic |
| TGGGAGCATGTTGCTGATTG+GGG | 0.569773 | 8_2:-69802013 | None:intergenic |
| TCCGACGGTTGACATCTTGG+TGG | 0.571154 | 8_2:+69803127 | Msa1265450:exon |
| GATGTTTCAGGGCAATGGAG+GGG | 0.572668 | 8_2:+69802876 | Msa1265450:intron |
| GCTATCTATCGCTAGTTCAA+GGG | 0.573987 | 8_2:-69803321 | None:intergenic |
| CATCACTTGATTGAAGAGCA+TGG | 0.578483 | 8_2:-69799722 | None:intergenic |
| CTGACCATTATTCTGCTGAC+CGG | 0.581910 | 8_2:-69802174 | None:intergenic |
| CTACCAAGAACATCAAGAGC+AGG | 0.583911 | 8_2:-69803058 | None:intergenic |
| GAACATATCTTATAGTGCAT+CGG | 0.584167 | 8_2:-69803106 | None:intergenic |
| AACACCGTCAATAGTAAGAC+CGG | 0.588874 | 8_2:-69799751 | None:intergenic |
| AGAACTGAGAAGAACCTTGG+AGG | 0.589879 | 8_2:-69799524 | None:intergenic |
| TTTAAGTTTGTACTTGACGA+TGG | 0.593316 | 8_2:+69799908 | Msa1265450:CDS |
| AGAACCGGTCTTACTATTGA+CGG | 0.593890 | 8_2:+69799747 | Msa1265450:CDS |
| ATATTTGTGGCAGCATACCC+AGG | 0.594726 | 8_2:+69801983 | Msa1265450:intron |
| CACTATAAGATATGTTCCGA+CGG | 0.597266 | 8_2:+69803112 | Msa1265450:CDS |
| GGTAACGCCGCTTTCTCCGG+CGG | 0.597825 | 8_2:+69799451 | Msa1265450:CDS |
| AATCTCATTGAAGTCAGTAA+CGG | 0.599498 | 8_2:-69801120 | None:intergenic |
| GAACTGAGAAGAACCTTGGA+GGG | 0.608680 | 8_2:-69799523 | None:intergenic |
| TGTTTCAGGGCAATGGAGGG+GGG | 0.625958 | 8_2:+69802878 | Msa1265450:intron |
| GTTACCGTCGAACTGACTCA+TGG | 0.626404 | 8_2:-69799434 | None:intergenic |
| TACCTGTGATTCTACATATG+CGG | 0.631647 | 8_2:+69803203 | Msa1265450:three_prime_UTR |
| TCAGAAGAGTGTTCATGACT+TGG | 0.632574 | 8_2:+69802193 | Msa1265450:CDS |
| AGAAGGCATGAAACCGCCGC+CGG | 0.632650 | 8_2:-69799467 | None:intergenic |
| TTGATCTGCTTGATCGTCAG+CGG | 0.639696 | 8_2:-69799699 | None:intergenic |
| GCCACCAAGATGTCAACCGT+CGG | 0.642703 | 8_2:-69803128 | None:intergenic |
| GTGAAGAAAGTAGAAACAAG+CGG | 0.667712 | 8_2:+69799291 | None:intergenic |
| GGCACCATGAGTCAGTTCGA+CGG | 0.714184 | 8_2:+69799430 | Msa1265450:exon |
| CCTTCTCAGGCCAATCAAGG+CGG | 0.735731 | 8_2:+69799484 | Msa1265450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTTTTGAAAGATA+AGG | + | chr8_2:69803432-69803451 | Msa1265450:three_prime_UTR | 10.0% |
| !!! | TTTTTTTTTTTGAAAGATAA+GGG | + | chr8_2:69803433-69803452 | Msa1265450:three_prime_UTR | 10.0% |
| !! | TAAGATTATTAAGAAGAAAA+TGG | - | chr8_2:69799556-69799575 | None:intergenic | 15.0% |
| !!! | TTTTTTTCCATAAAAGAAAA+AGG | + | chr8_2:69800578-69800597 | Msa1265450:intron | 15.0% |
| !! | ATTAAAAAGTTAAAGGTTTA+GGG | - | chr8_2:69800729-69800748 | None:intergenic | 15.0% |
| !!! | ATTTTATTTTGTAATGACTA+GGG | - | chr8_2:69801298-69801317 | None:intergenic | 15.0% |
| !!! | TATTTTATTTTGTAATGACT+AGG | - | chr8_2:69801299-69801318 | None:intergenic | 15.0% |
| !! | AATAACACAGAATCAAAAAT+CGG | + | chr8_2:69799314-69799333 | Msa1265450:five_prime_UTR | 20.0% |
| !! | TTATACTTTCTATGTAAGTA+AGG | + | chr8_2:69800191-69800210 | Msa1265450:intron | 20.0% |
| !!! | TCTTATAACTAAGTTTTACT+AGG | + | chr8_2:69800522-69800541 | Msa1265450:intron | 20.0% |
| !!! | TTTCTTTCCTTTTTCTTTTA+TGG | - | chr8_2:69800588-69800607 | None:intergenic | 20.0% |
| !! | GATTAAAAAGTTAAAGGTTT+AGG | - | chr8_2:69800730-69800749 | None:intergenic | 20.0% |
| !!! | AAAATTCCATTTTCATTGTT+AGG | + | chr8_2:69800850-69800869 | Msa1265450:intron | 20.0% |
| !!! | TTTTTATAGTGTGAATTTTG+TGG | - | chr8_2:69801331-69801350 | None:intergenic | 20.0% |
| !! | TGAAAATAAGATACATGTTT+AGG | + | chr8_2:69801750-69801769 | Msa1265450:intron | 20.0% |
| !! | GAAAATAAGATACATGTTTA+GGG | + | chr8_2:69801751-69801770 | Msa1265450:intron | 20.0% |
| !!! | ATTAAATTACTGTTTCTTGT+TGG | - | chr8_2:69801826-69801845 | None:intergenic | 20.0% |
| !! | TAAGCAGAAAATAAAAGATA+TGG | - | chr8_2:69802107-69802126 | None:intergenic | 20.0% |
| !!! | CTTTGTTATTTCTTGAATTT+CGG | + | chr8_2:69802324-69802343 | Msa1265450:intron | 20.0% |
| !! | GTCAACTAGTAAAAAATTTA+CGG | + | chr8_2:69802563-69802582 | Msa1265450:intron | 20.0% |
| !!! | CAGTGACAAAAAATTATTTT+TGG | + | chr8_2:69802608-69802627 | Msa1265450:intron | 20.0% |
| !!! | TGTTTTACTTTGTTAGAATT+GGG | + | chr8_2:69802804-69802823 | Msa1265450:intron | 20.0% |
| !!! | AACATCAGTAACAAAATTTT+AGG | - | chr8_2:69802862-69802881 | None:intergenic | 20.0% |
| ! | ATAACACAGAATCAAAAATC+GGG | + | chr8_2:69799315-69799334 | Msa1265450:five_prime_UTR | 25.0% |
| !! | TCATGTAATTGATGTGTTTT+AGG | + | chr8_2:69799631-69799650 | Msa1265450:intron | 25.0% |
| !! | CATGTAATTGATGTGTTTTA+GGG | + | chr8_2:69799632-69799651 | Msa1265450:intron | 25.0% |
| ! | GTACTAAATGCAATACAATA+AGG | - | chr8_2:69800144-69800163 | None:intergenic | 25.0% |
| ! | ATTGCATTTAGTACTATACT+TGG | + | chr8_2:69800150-69800169 | Msa1265450:intron | 25.0% |
| ! | GGGTGATTATAATATCAAAA+TGG | - | chr8_2:69800395-69800414 | None:intergenic | 25.0% |
| ! | AACTTAGTTATAAGAAGAAG+CGG | - | chr8_2:69800517-69800536 | None:intergenic | 25.0% |
| ! | CATTTGCCATTCAAAATAAA+AGG | - | chr8_2:69800656-69800675 | None:intergenic | 25.0% |
| ! | CAAAGGGATTAAAAAGTTAA+AGG | - | chr8_2:69800736-69800755 | None:intergenic | 25.0% |
| ! | ATAAATAAATAAACCAGAGG+GGG | - | chr8_2:69800800-69800819 | None:intergenic | 25.0% |
| ! | GATAAATAAATAAACCAGAG+GGG | - | chr8_2:69800801-69800820 | None:intergenic | 25.0% |
| ! | CGATAAATAAATAAACCAGA+GGG | - | chr8_2:69800802-69800821 | None:intergenic | 25.0% |
| ! | ACGATAAATAAATAAACCAG+AGG | - | chr8_2:69800803-69800822 | None:intergenic | 25.0% |
| ! | TCTATATAATTCGAAGTTAC+AGG | + | chr8_2:69801175-69801194 | Msa1265450:CDS | 25.0% |
| ! | ACTCTCAGTTGTATAAAATT+AGG | + | chr8_2:69801358-69801377 | Msa1265450:intron | 25.0% |
| !!! | TTTAGGTTTTGAATTTGACA+GGG | - | chr8_2:69801473-69801492 | None:intergenic | 25.0% |
| !!! | ATTTAGGTTTTGAATTTGAC+AGG | - | chr8_2:69801474-69801493 | None:intergenic | 25.0% |
| !! | TATAAAGAACTAATTTGCCT+AGG | + | chr8_2:69801869-69801888 | Msa1265450:intron | 25.0% |
| !! | TTTAAAATACACCTGTTTGT+GGG | - | chr8_2:69802239-69802258 | None:intergenic | 25.0% |
| !!! | TTTTAAAATACACCTGTTTG+TGG | - | chr8_2:69802240-69802259 | None:intergenic | 25.0% |
| ! | TAACAGCTGTTATATGTTAT+AGG | - | chr8_2:69802293-69802312 | None:intergenic | 25.0% |
| ! | CGAAATTCAAGAAATAACAA+AGG | - | chr8_2:69802326-69802345 | None:intergenic | 25.0% |
| !! | AGTAGAAAACACACAATTTT+GGG | - | chr8_2:69802511-69802530 | None:intergenic | 25.0% |
| !! | AAGTAGAAAACACACAATTT+TGG | - | chr8_2:69802512-69802531 | None:intergenic | 25.0% |
| ! | AACTAGTAAAAAATTTACGG+TGG | + | chr8_2:69802566-69802585 | Msa1265450:intron | 25.0% |
| !!! | TTTTTGGCAATTTAACTTGA+TGG | + | chr8_2:69802624-69802643 | Msa1265450:intron | 25.0% |
| ! | CTGAAAACTTAATAGTAATC+TGG | - | chr8_2:69802689-69802708 | None:intergenic | 25.0% |
| ! | AACACAGATAAATAACAGAT+TGG | - | chr8_2:69802788-69802807 | None:intergenic | 25.0% |
| !! | GTGTTTTACTTTGTTAGAAT+TGG | + | chr8_2:69802803-69802822 | Msa1265450:intron | 25.0% |
| !!! | AGTAACAAAATTTTAGGTTG+TGG | - | chr8_2:69802856-69802875 | None:intergenic | 25.0% |
| !! | AATTTTGTTACTGATGTTTC+AGG | + | chr8_2:69802864-69802883 | Msa1265450:intron | 25.0% |
| !! | ATTTTGTTACTGATGTTTCA+GGG | + | chr8_2:69802865-69802884 | Msa1265450:intron | 25.0% |
| !!! | GAGATTAATCACTTTTAAAC+AGG | + | chr8_2:69803393-69803412 | Msa1265450:three_prime_UTR | 25.0% |
| TAACACAGAATCAAAAATCG+GGG | + | chr8_2:69799316-69799335 | Msa1265450:five_prime_UTR | 30.0% | |
| TCGAAATTTCTGTTCAATCA+CGG | + | chr8_2:69799401-69799420 | Msa1265450:five_prime_UTR | 30.0% | |
| CTATTGTGAATTACGATTTG+TGG | + | chr8_2:69799804-69799823 | Msa1265450:intron | 30.0% | |
| ! | TTTAAGTTTGTACTTGACGA+TGG | + | chr8_2:69799908-69799927 | Msa1265450:CDS | 30.0% |
| TACTTGGTTAATGTCTAATC+AGG | + | chr8_2:69800166-69800185 | Msa1265450:intron | 30.0% | |
| CTTTCTATGTAAGTAAGGAT+AGG | + | chr8_2:69800196-69800215 | Msa1265450:intron | 30.0% | |
| ATGTAAGTAAGGATAGGAAT+AGG | + | chr8_2:69800202-69800221 | Msa1265450:intron | 30.0% | |
| GATATTATAATCACCCTTGT+CGG | + | chr8_2:69800399-69800418 | Msa1265450:intron | 30.0% | |
| ! | GATGAGAAAGCATAAAAAAG+TGG | - | chr8_2:69800495-69800514 | None:intergenic | 30.0% |
| AGAAATATGTGATTGCATTG+AGG | + | chr8_2:69800603-69800622 | Msa1265450:intron | 30.0% | |
| TGCCATTCAAAATAAAAGGA+GGG | - | chr8_2:69800652-69800671 | None:intergenic | 30.0% | |
| TTGCCATTCAAAATAAAAGG+AGG | - | chr8_2:69800653-69800672 | None:intergenic | 30.0% | |
| ! | TCCATTTTCATTGTTAGGAA+TGG | + | chr8_2:69800855-69800874 | Msa1265450:intron | 30.0% |
| TCCATTCCTAACAATGAAAA+TGG | - | chr8_2:69800859-69800878 | None:intergenic | 30.0% | |
| CGTTTATATGGACAATTGAA+AGG | + | chr8_2:69800888-69800907 | Msa1265450:CDS | 30.0% | |
| TGTCGTTAATCTATTACCAT+AGG | + | chr8_2:69801022-69801041 | Msa1265450:intron | 30.0% | |
| CCTGAAAATGACACAAATTA+AGG | - | chr8_2:69801099-69801118 | None:intergenic | 30.0% | |
| !!! | CCTTAATTTGTGTCATTTTC+AGG | + | chr8_2:69801096-69801115 | Msa1265450:intron | 30.0% |
| AATCTCATTGAAGTCAGTAA+CGG | - | chr8_2:69801123-69801142 | None:intergenic | 30.0% | |
| ! | TTATAGTGTGAATTTTGTGG+TGG | - | chr8_2:69801328-69801347 | None:intergenic | 30.0% |
| TTATACAACTGAGAGTTTGA+AGG | - | chr8_2:69801354-69801373 | None:intergenic | 30.0% | |
| ! | GTTTACCTGTTTCATGTTTT+GGG | - | chr8_2:69801415-69801434 | None:intergenic | 30.0% |
| ! | TGTTTACCTGTTTCATGTTT+TGG | - | chr8_2:69801416-69801435 | None:intergenic | 30.0% |
| ! | TTTTGAATTTGACAGGGAAT+CGG | - | chr8_2:69801467-69801486 | None:intergenic | 30.0% |
| AGAAAACACTAAGAATACCT+TGG | + | chr8_2:69801536-69801555 | Msa1265450:intron | 30.0% | |
| AGAAAGAAGAAAAAAAGTCG+TGG | + | chr8_2:69801704-69801723 | Msa1265450:intron | 30.0% | |
| GAAAGAAGAAAAAAAGTCGT+GGG | + | chr8_2:69801705-69801724 | Msa1265450:intron | 30.0% | |
| ACTTATAAGTCCATGTCTTT+AGG | - | chr8_2:69801786-69801805 | None:intergenic | 30.0% | |
| ! | AATGATTTGTGCCATATTTG+TGG | + | chr8_2:69801970-69801989 | Msa1265450:intron | 30.0% |
| ! | TATGGTTGACTTACTTGATT+TGG | - | chr8_2:69802089-69802108 | None:intergenic | 30.0% |
| ! | AGTTTTTATCATATCCTCAC+TGG | + | chr8_2:69802126-69802145 | Msa1265450:intron | 30.0% |
| !!! | TGACTTGGTGTTAGAATTTT+TGG | + | chr8_2:69802208-69802227 | Msa1265450:CDS | 30.0% |
| !! | ATTTCTTGAATTTCGGTGTT+AGG | + | chr8_2:69802331-69802350 | Msa1265450:intron | 30.0% |
| TGTTAGTTGAGAGTTAAGTT+AGG | + | chr8_2:69802356-69802375 | Msa1265450:intron | 30.0% | |
| ! | TAACTTGATGGCATATTACA+TGG | + | chr8_2:69802636-69802655 | Msa1265450:intron | 30.0% |
| TTAATAGTAATCTGGTGTGA+TGG | - | chr8_2:69802681-69802700 | None:intergenic | 30.0% | |
| TTAGAATTGGGATTACTTGA+AGG | + | chr8_2:69802816-69802835 | Msa1265450:intron | 30.0% | |
| !!! | AAATTTTAGGTTGTGGATAC+TGG | - | chr8_2:69802849-69802868 | None:intergenic | 30.0% |
| AGGAGTCAAAAAACATAACT+TGG | - | chr8_2:69803022-69803041 | None:intergenic | 30.0% | |
| GAACATATCTTATAGTGCAT+CGG | - | chr8_2:69803109-69803128 | None:intergenic | 30.0% | |
| TAATGCATCTGTTGTGTAAA+CGG | + | chr8_2:69803352-69803371 | Msa1265450:three_prime_UTR | 30.0% | |
| CAAAAATCGGGGAAGAAAAA+TGG | + | chr8_2:69799327-69799346 | Msa1265450:five_prime_UTR | 35.0% | |
| TCTGTTCAATCACGGAAAAT+CGG | + | chr8_2:69799409-69799428 | Msa1265450:five_prime_UTR | 35.0% | |
| AACATCAATTAGACACGCTA+GGG | + | chr8_2:69799581-69799600 | Msa1265450:intron | 35.0% | |
| CAATCAAGTGATGATAGAAC+CGG | + | chr8_2:69799732-69799751 | Msa1265450:CDS | 35.0% | |
| ! | CTCACAATTTTATTGTGTCC+AGG | + | chr8_2:69799838-69799857 | Msa1265450:intron | 35.0% |
| GAACAATCGAGTGTACTAAA+TGG | + | chr8_2:69799936-69799955 | Msa1265450:CDS | 35.0% | |
| GTATGTTACCTTTCCTTTAC+AGG | + | chr8_2:69800107-69800126 | Msa1265450:intron | 35.0% | |
| CATACAATCCTGTAAAGGAA+AGG | - | chr8_2:69800118-69800137 | None:intergenic | 35.0% | |
| !! | GTTTGGTGTTTGTTAAGTCT+AGG | - | chr8_2:69800241-69800260 | None:intergenic | 35.0% |
| GACTTAACAAACACCAAACA+TGG | + | chr8_2:69800242-69800261 | Msa1265450:intron | 35.0% | |
| AAAATTGCAGACTACAGATC+AGG | - | chr8_2:69800294-69800313 | None:intergenic | 35.0% | |
| CTTCTCCATACTTACAGATA+GGG | - | chr8_2:69800445-69800464 | None:intergenic | 35.0% | |
| TCTTCTCCATACTTACAGAT+AGG | - | chr8_2:69800446-69800465 | None:intergenic | 35.0% | |
| AATATGTGATTGCATTGAGG+TGG | + | chr8_2:69800606-69800625 | Msa1265450:intron | 35.0% | |
| CCATTCAAAATAAAAGGAGG+GGG | - | chr8_2:69800650-69800669 | None:intergenic | 35.0% | |
| GCCATTCAAAATAAAAGGAG+GGG | - | chr8_2:69800651-69800670 | None:intergenic | 35.0% | |
| ! | AAGGTTTAGGGTTCAAATCT+TGG | - | chr8_2:69800717-69800736 | None:intergenic | 35.0% |
| GGAATGTATGTGCGTTTATA+TGG | + | chr8_2:69800876-69800895 | Msa1265450:CDS | 35.0% | |
| ! | GGACAATTGAAAGGTTTTCA+TGG | + | chr8_2:69800897-69800916 | Msa1265450:CDS | 35.0% |
| CCTGAGAGAGAAAATACTTA+AGG | - | chr8_2:69800931-69800950 | None:intergenic | 35.0% | |
| ! | CCTTAAGTATTTTCTCTCTC+AGG | + | chr8_2:69800928-69800947 | Msa1265450:CDS | 35.0% |
| ! | AGTATTTTCTCTCTCAGGTA+TGG | + | chr8_2:69800933-69800952 | Msa1265450:intron | 35.0% |
| ! | ATGCTAAAAACACTAGCCTA+TGG | - | chr8_2:69801041-69801060 | None:intergenic | 35.0% |
| ATCTCATTGAAGTCAGTAAC+GGG | - | chr8_2:69801122-69801141 | None:intergenic | 35.0% | |
| CATAAATGCACTCAAGGAAA+TGG | - | chr8_2:69801151-69801170 | None:intergenic | 35.0% | |
| GATGAACATAAATGCACTCA+AGG | - | chr8_2:69801157-69801176 | None:intergenic | 35.0% | |
| TAATAAACCCAGACTCAGAT+AGG | + | chr8_2:69801246-69801265 | Msa1265450:intron | 35.0% | |
| ACATAAATACATACCTCAGC+CGG | + | chr8_2:69801439-69801458 | Msa1265450:intron | 35.0% | |
| ! | CTGCTGCAGTAAATTGATTT+AGG | - | chr8_2:69801490-69801509 | None:intergenic | 35.0% |
| GTGATAATATGTTGTACTGC+AGG | - | chr8_2:69801600-69801619 | None:intergenic | 35.0% | |
| !! | AAAAGTCGTGGGTTTGTTAA+AGG | + | chr8_2:69801716-69801735 | Msa1265450:intron | 35.0% |
| ATAAGTCCATGTCTTTAGGT+GGG | - | chr8_2:69801782-69801801 | None:intergenic | 35.0% | |
| TATAAGTCCATGTCTTTAGG+TGG | - | chr8_2:69801783-69801802 | None:intergenic | 35.0% | |
| ! | GTCTGATGTTTTATGGTGTT+TGG | - | chr8_2:69801895-69801914 | None:intergenic | 35.0% |
| ! | GCTCTTTGTCTGATGTTTTA+TGG | - | chr8_2:69801902-69801921 | None:intergenic | 35.0% |
| !! | TTGAGCTTGATAACCTTTTG+TGG | - | chr8_2:69802057-69802076 | None:intergenic | 35.0% |
| !! | ACTTACTTGATTTGGTGGAA+TGG | - | chr8_2:69802081-69802100 | None:intergenic | 35.0% |
| !! | ACTTTTTCTCTGTAGTTCTC+CGG | + | chr8_2:69802155-69802174 | Msa1265450:intron | 35.0% |
| AGAGTTAAGTTAGGATTACC+TGG | + | chr8_2:69802365-69802384 | Msa1265450:intron | 35.0% | |
| GAGTTAAGTTAGGATTACCT+GGG | + | chr8_2:69802366-69802385 | Msa1265450:intron | 35.0% | |
| ! | TTGTGTTTTTCGTACTGTCT+AGG | - | chr8_2:69802398-69802417 | None:intergenic | 35.0% |
| GTTAATAGCCTTCTTGAACT+TGG | + | chr8_2:69802421-69802440 | Msa1265450:intron | 35.0% | |
| AAGGTGAATGAGCAAAAAGT+TGG | + | chr8_2:69802444-69802463 | Msa1265450:intron | 35.0% | |
| GAATCTATTGCGAACAATCT+TGG | + | chr8_2:69802911-69802930 | Msa1265450:CDS | 35.0% | |
| GAACAATCTTGGAGTTTCTT+TGG | + | chr8_2:69802922-69802941 | Msa1265450:CDS | 35.0% | |
| TTGGACAACATGATAAGTGA+GGG | - | chr8_2:69803003-69803022 | None:intergenic | 35.0% | |
| CACTATAAGATATGTTCCGA+CGG | + | chr8_2:69803112-69803131 | Msa1265450:CDS | 35.0% | |
| AGGCAAAGTAGAGCATATTA+AGG | - | chr8_2:69803170-69803189 | None:intergenic | 35.0% | |
| ACAGGTACGCATAAAAACTT+AGG | - | chr8_2:69803190-69803209 | None:intergenic | 35.0% | |
| TACCTGTGATTCTACATATG+CGG | + | chr8_2:69803203-69803222 | Msa1265450:three_prime_UTR | 35.0% | |
| ATTCTACATATGCGGACATA+AGG | + | chr8_2:69803211-69803230 | Msa1265450:three_prime_UTR | 35.0% | |
| ATAAGGAAAAGCTGTAGATC+TGG | + | chr8_2:69803228-69803247 | Msa1265450:three_prime_UTR | 35.0% | |
| AATGCATCTGTTGTGTAAAC+GGG | + | chr8_2:69803353-69803372 | Msa1265450:three_prime_UTR | 35.0% | |
| AAATCGGGGAAGAAAAATGG+CGG | + | chr8_2:69799330-69799349 | Msa1265450:five_prime_UTR | 40.0% | |
| AGCGTGTCTAATTGATGTTG+CGG | - | chr8_2:69799580-69799599 | None:intergenic | 40.0% | |
| CAACATCAATTAGACACGCT+AGG | + | chr8_2:69799580-69799599 | Msa1265450:intron | 40.0% | |
| AATTAGACACGCTAGGGTTA+GGG | + | chr8_2:69799587-69799606 | Msa1265450:intron | 40.0% | |
| CATCACTTGATTGAAGAGCA+TGG | - | chr8_2:69799725-69799744 | None:intergenic | 40.0% | |
| AGAACCGGTCTTACTATTGA+CGG | + | chr8_2:69799747-69799766 | Msa1265450:CDS | 40.0% | |
| AACACCGTCAATAGTAAGAC+CGG | - | chr8_2:69799754-69799773 | None:intergenic | 40.0% | |
| CAAAAACTCGTCGTTCACAA+AGG | - | chr8_2:69800034-69800053 | None:intergenic | 40.0% | |
| ! | ACGAGTTTTTGTCTACTTGC+AGG | + | chr8_2:69800043-69800062 | Msa1265450:intron | 40.0% |
| GGCAACATACAATCCTGTAA+AGG | - | chr8_2:69800123-69800142 | None:intergenic | 40.0% | |
| AAGTAAGGATAGGAATAGGC+TGG | + | chr8_2:69800206-69800225 | Msa1265450:intron | 40.0% | |
| TTTGTTAAGTCTAGGTCGGT+CGG | - | chr8_2:69800233-69800252 | None:intergenic | 40.0% | |
| ! | GGTGTTTGTTAAGTCTAGGT+CGG | - | chr8_2:69800237-69800256 | None:intergenic | 40.0% |
| AACAAACACCAAACATGGCT+TGG | + | chr8_2:69800247-69800266 | Msa1265450:intron | 40.0% | |
| GATAGGGATGAGAATAAGTC+AGG | - | chr8_2:69800429-69800448 | None:intergenic | 40.0% | |
| CTCATCCCTATCTGTAAGTA+TGG | + | chr8_2:69800437-69800456 | Msa1265450:intron | 40.0% | |
| ! | AGGGGGCAACTACAATTTTA+CGG | - | chr8_2:69800633-69800652 | None:intergenic | 40.0% |
| !!! | CCCCCTCCTTTTATTTTGAA+TGG | + | chr8_2:69800647-69800666 | Msa1265450:intron | 40.0% |
| TCATCTGCTAGCAAAACAAC+AGG | - | chr8_2:69801065-69801084 | None:intergenic | 40.0% | |
| ! | AGCCATGCAACGATTTTGTT+AGG | + | chr8_2:69801272-69801291 | Msa1265450:intron | 40.0% |
| ! | AGTGTGAATTTTGTGGTGGT+TGG | - | chr8_2:69801324-69801343 | None:intergenic | 40.0% |
| !!! | CCTGTTTCATGTTTTGGGTT+GGG | - | chr8_2:69801410-69801429 | None:intergenic | 40.0% |
| !! | ACCTGTTTCATGTTTTGGGT+TGG | - | chr8_2:69801411-69801430 | None:intergenic | 40.0% |
| AACATCTTGCAAAGTCTGAC+AGG | - | chr8_2:69801562-69801581 | None:intergenic | 40.0% | |
| ! | AGTGCTGGATCATGCTAATT+TGG | - | chr8_2:69801651-69801670 | None:intergenic | 40.0% |
| ! | TGTTTTATGGTGTTTGGCCT+AGG | - | chr8_2:69801889-69801908 | None:intergenic | 40.0% |
| GCAGTGCTTTGTATGGAATT+GGG | - | chr8_2:69802035-69802054 | None:intergenic | 40.0% | |
| ! | TTTTGTGGCAGTGCTTTGTA+TGG | - | chr8_2:69802042-69802061 | None:intergenic | 40.0% |
| !! | ATACAAAGCACTGCCACAAA+AGG | + | chr8_2:69802041-69802060 | Msa1265450:CDS | 40.0% |
| !! | GGTTGACTTACTTGATTTGG+TGG | - | chr8_2:69802086-69802105 | None:intergenic | 40.0% |
| !! | GAAAAAGTACTGAACCAGTG+AGG | - | chr8_2:69802143-69802162 | None:intergenic | 40.0% |
| !! | TCAGAAGAGTGTTCATGACT+TGG | + | chr8_2:69802193-69802212 | Msa1265450:CDS | 40.0% |
| ATAGCCTTCTTGAACTTGGA+AGG | + | chr8_2:69802425-69802444 | Msa1265450:intron | 40.0% | |
| TTCACCTTCCAAGTTCAAGA+AGG | - | chr8_2:69802432-69802451 | None:intergenic | 40.0% | |
| TTACTGATGTTTCAGGGCAA+TGG | + | chr8_2:69802871-69802890 | Msa1265450:intron | 40.0% | |
| AACATGATAAGTGAGGGAGA+GGG | - | chr8_2:69802997-69803016 | None:intergenic | 40.0% | |
| CTTGGACAACATGATAAGTG+AGG | - | chr8_2:69803004-69803023 | None:intergenic | 40.0% | |
| CAGGTCTGCAAAACAAGATA+AGG | - | chr8_2:69803042-69803061 | None:intergenic | 40.0% | |
| GCTATCTATCGCTAGTTCAA+GGG | - | chr8_2:69803324-69803343 | None:intergenic | 40.0% | |
| TGCTATCTATCGCTAGTTCA+AGG | - | chr8_2:69803325-69803344 | None:intergenic | 40.0% | |
| ! | ACGGGTTTTTCTCAGATTGT+TGG | + | chr8_2:69803371-69803390 | Msa1265450:three_prime_UTR | 40.0% |
| AATCGGGGAAGAAAAATGGC+GGG | + | chr8_2:69799331-69799350 | Msa1265450:five_prime_UTR | 45.0% | |
| GAACTGAGAAGAACCTTGGA+GGG | - | chr8_2:69799526-69799545 | None:intergenic | 45.0% | |
| AGAACTGAGAAGAACCTTGG+AGG | - | chr8_2:69799527-69799546 | None:intergenic | 45.0% | |
| GTGAGAACTGAGAAGAACCT+TGG | - | chr8_2:69799530-69799549 | None:intergenic | 45.0% | |
| CAATTAGACACGCTAGGGTT+AGG | + | chr8_2:69799586-69799605 | Msa1265450:intron | 45.0% | |
| TTGATCTGCTTGATCGTCAG+CGG | - | chr8_2:69799702-69799721 | None:intergenic | 45.0% | |
| GGTCTTACTATTGACGGTGT+TGG | + | chr8_2:69799753-69799772 | Msa1265450:CDS | 45.0% | |
| TGTGTCCAGGTTACTCTTGT+TGG | + | chr8_2:69799851-69799870 | Msa1265450:intron | 45.0% | |
| TCCAGGTTACTCTTGTTGGT+AGG | + | chr8_2:69799855-69799874 | Msa1265450:intron | 45.0% | |
| CCAGGTTACTCTTGTTGGTA+GGG | + | chr8_2:69799856-69799875 | Msa1265450:intron | 45.0% | |
| GGTAGGGTTTGCAACAAATC+TGG | + | chr8_2:69799872-69799891 | Msa1265450:CDS | 45.0% | |
| TTTGTACTTGACGATGGCAC+TGG | + | chr8_2:69799914-69799933 | Msa1265450:CDS | 45.0% | |
| GTGTTAGTCCAAGCCATGTT+TGG | - | chr8_2:69800258-69800277 | None:intergenic | 45.0% | |
| ! | TGGCTTGGACTAACACTTCA+AGG | + | chr8_2:69800262-69800281 | Msa1265450:intron | 45.0% |
| GGACTAACACTTCAAGGCAT+AGG | + | chr8_2:69800268-69800287 | Msa1265450:intron | 45.0% | |
| TAAGTCAGGCTAACCGACAA+GGG | - | chr8_2:69800415-69800434 | None:intergenic | 45.0% | |
| ATAAGTCAGGCTAACCGACA+AGG | - | chr8_2:69800416-69800435 | None:intergenic | 45.0% | |
| ! | GGGGGCAACTACAATTTTAC+GGG | - | chr8_2:69800632-69800651 | None:intergenic | 45.0% |
| AGCTCACTTGGTTGAGCAAA+GGG | - | chr8_2:69800752-69800771 | None:intergenic | 45.0% | |
| TAGCTCACTTGGTTGAGCAA+AGG | - | chr8_2:69800753-69800772 | None:intergenic | 45.0% | |
| AATGCACTCAAGGAAATGGC+TGG | - | chr8_2:69801147-69801166 | None:intergenic | 45.0% | |
| GGCTAATCCTATCTGAGTCT+GGG | - | chr8_2:69801256-69801275 | None:intergenic | 45.0% | |
| TGGCTAATCCTATCTGAGTC+TGG | - | chr8_2:69801257-69801276 | None:intergenic | 45.0% | |
| GGCCTAACAAAATCGTTGCA+TGG | - | chr8_2:69801277-69801296 | None:intergenic | 45.0% | |
| CCCAACCCAAAACATGAAAC+AGG | + | chr8_2:69801407-69801426 | Msa1265450:intron | 45.0% | |
| TGGGTATGCTGCCACAAATA+TGG | - | chr8_2:69801984-69802003 | None:intergenic | 45.0% | |
| ATATTTGTGGCAGCATACCC+AGG | + | chr8_2:69801983-69802002 | Msa1265450:intron | 45.0% | |
| ! | TTGGGAGCATGTTGCTGATT+GGG | - | chr8_2:69802017-69802036 | None:intergenic | 45.0% |
| ! | ATTGGGAGCATGTTGCTGAT+TGG | - | chr8_2:69802018-69802037 | None:intergenic | 45.0% |
| GGCAGTGCTTTGTATGGAAT+TGG | - | chr8_2:69802036-69802055 | None:intergenic | 45.0% | |
| TTCTCCGGTCAGCAGAATAA+TGG | + | chr8_2:69802170-69802189 | Msa1265450:CDS | 45.0% | |
| CTGACCATTATTCTGCTGAC+CGG | - | chr8_2:69802177-69802196 | None:intergenic | 45.0% | |
| !!! | TTTTGGCTCTTCCCACAAAC+AGG | + | chr8_2:69802225-69802244 | Msa1265450:CDS | 45.0% |
| TGATGTTTCAGGGCAATGGA+GGG | + | chr8_2:69802875-69802894 | Msa1265450:intron | 45.0% | |
| CAACATGATAAGTGAGGGAG+AGG | - | chr8_2:69802998-69803017 | None:intergenic | 45.0% | |
| AGACCTGCTCTTGATGTTCT+TGG | + | chr8_2:69803055-69803074 | Msa1265450:intron | 45.0% | |
| CTACCAAGAACATCAAGAGC+AGG | - | chr8_2:69803061-69803080 | None:intergenic | 45.0% | |
| !! | CTTGATGTTCTTGGTAGCGA+AGG | + | chr8_2:69803064-69803083 | Msa1265450:CDS | 45.0% |
| AGCGAAGGTCTCGTTTATGA+AGG | + | chr8_2:69803079-69803098 | Msa1265450:CDS | 45.0% | |
| GTCCGCATATGTAGAATCAC+AGG | - | chr8_2:69803208-69803227 | None:intergenic | 45.0% | |
| !! | ATATTTAATATCAAAATAAT+TGG | - | chr8_2:69799360-69799379 | None:intergenic | 5.0% |
| ! | GTTACCGTCGAACTGACTCA+TGG | - | chr8_2:69799437-69799456 | None:intergenic | 50.0% |
| ATGCCTTCTCAGGCCAATCA+AGG | + | chr8_2:69799481-69799500 | Msa1265450:CDS | 50.0% | |
| AGAGGATTCACCGCCTTGAT+TGG | - | chr8_2:69799497-69799516 | None:intergenic | 50.0% | |
| ACACGCTAGGGTTAGGGTTT+AGG | + | chr8_2:69799593-69799612 | Msa1265450:intron | 50.0% | |
| CACGCTAGGGTTAGGGTTTA+GGG | + | chr8_2:69799594-69799613 | Msa1265450:intron | 50.0% | |
| CCCTACCAACAAGAGTAACC+TGG | - | chr8_2:69799859-69799878 | None:intergenic | 50.0% | |
| TCACGAACCTGCTGATGCAA+TGG | + | chr8_2:69800068-69800087 | Msa1265450:CDS | 50.0% | |
| ! | TAACTAGTTTGGGAGGGGGA+GGG | - | chr8_2:69800777-69800796 | None:intergenic | 50.0% |
| ! | AGGGGGTAACTAGTTTGGGA+GGG | - | chr8_2:69800783-69800802 | None:intergenic | 50.0% |
| ! | CCAGAGGGGGTAACTAGTTT+GGG | - | chr8_2:69800787-69800806 | None:intergenic | 50.0% |
| ACCAGAGGGGGTAACTAGTT+TGG | - | chr8_2:69800788-69800807 | None:intergenic | 50.0% | |
| ATTTGACAGGGAATCGGCAC+CGG | - | chr8_2:69801461-69801480 | None:intergenic | 50.0% | |
| TTGCAAAGTCTGACAGGCCA+AGG | - | chr8_2:69801556-69801575 | None:intergenic | 50.0% | |
| CGCAGTACTTTGCTTAGTGC+TGG | - | chr8_2:69801666-69801685 | None:intergenic | 50.0% | |
| !! | GCACTAAGCAAAGTACTGCG+AGG | + | chr8_2:69801666-69801685 | Msa1265450:intron | 50.0% |
| ! | TGGGAGCATGTTGCTGATTG+GGG | - | chr8_2:69802016-69802035 | None:intergenic | 50.0% |
| TACTGTCTAGGTCAAGTCCC+AGG | - | chr8_2:69802386-69802405 | None:intergenic | 50.0% | |
| CTGATGTTTCAGGGCAATGG+AGG | + | chr8_2:69802874-69802893 | Msa1265450:intron | 50.0% | |
| GATGTTTCAGGGCAATGGAG+GGG | + | chr8_2:69802876-69802895 | Msa1265450:intron | 50.0% | |
| ATGTTTCAGGGCAATGGAGG+GGG | + | chr8_2:69802877-69802896 | Msa1265450:intron | 50.0% | |
| ATAAGTGAGGGAGAGGGAGA+TGG | - | chr8_2:69802991-69803010 | None:intergenic | 50.0% | |
| TGTTCCGACGGTTGACATCT+TGG | + | chr8_2:69803124-69803143 | Msa1265450:exon | 50.0% | |
| GGCACCATGAGTCAGTTCGA+CGG | + | chr8_2:69799430-69799449 | Msa1265450:exon | 55.0% | |
| CCTTCTCAGGCCAATCAAGG+CGG | + | chr8_2:69799484-69799503 | Msa1265450:CDS | 55.0% | |
| ATCCTCTCTCACTCCCTCCA+AGG | + | chr8_2:69799510-69799529 | Msa1265450:CDS | 55.0% | |
| AACCTTGGAGGGAGTGAGAG+AGG | - | chr8_2:69799515-69799534 | None:intergenic | 55.0% | |
| ACCTGCTGATGCAATGGCAG+TGG | + | chr8_2:69800074-69800093 | Msa1265450:CDS | 55.0% | |
| TCCACTGCCATTGCATCAGC+AGG | - | chr8_2:69800078-69800097 | None:intergenic | 55.0% | |
| ! | AACTAGTTTGGGAGGGGGAG+GGG | - | chr8_2:69800776-69800795 | None:intergenic | 55.0% |
| ! | GTAACTAGTTTGGGAGGGGG+AGG | - | chr8_2:69800778-69800797 | None:intergenic | 55.0% |
| ! | GGGGTAACTAGTTTGGGAGG+GGG | - | chr8_2:69800781-69800800 | None:intergenic | 55.0% |
| ! | GGGGGTAACTAGTTTGGGAG+GGG | - | chr8_2:69800782-69800801 | None:intergenic | 55.0% |
| ! | GAGGGGGTAACTAGTTTGGG+AGG | - | chr8_2:69800784-69800803 | None:intergenic | 55.0% |
| CCCAAACTAGTTACCCCCTC+TGG | + | chr8_2:69800784-69800803 | Msa1265450:intron | 55.0% | |
| GCTGCACCCACCTAAAGACA+TGG | + | chr8_2:69801773-69801792 | Msa1265450:intron | 55.0% | |
| ! | CTGATTGGGGATGCTAGCCT+GGG | - | chr8_2:69802003-69802022 | None:intergenic | 55.0% |
| TGTTTCAGGGCAATGGAGGG+GGG | + | chr8_2:69802878-69802897 | Msa1265450:intron | 55.0% | |
| TCCGACGGTTGACATCTTGG+TGG | + | chr8_2:69803127-69803146 | Msa1265450:exon | 55.0% | |
| GCCACCAAGATGTCAACCGT+CGG | - | chr8_2:69803131-69803150 | None:intergenic | 55.0% | |
| ! | GGTTGACATCTTGGTGGCAG+AGG | + | chr8_2:69803133-69803152 | Msa1265450:exon | 55.0% |
| ! | GACGGTAACGCCGCTTTCTC+CGG | + | chr8_2:69799448-69799467 | Msa1265450:CDS | 60.0% |
| ! | AGAAGGCATGAAACCGCCGC+CGG | - | chr8_2:69799470-69799489 | None:intergenic | 60.0% |
| CGGCGGTTTCATGCCTTCTC+AGG | + | chr8_2:69799471-69799490 | Msa1265450:CDS | 60.0% | |
| !! | CCGCCTTGATTGGCCTGAGA+AGG | - | chr8_2:69799487-69799506 | None:intergenic | 60.0% |
| GCTGATTGGGGATGCTAGCC+TGG | - | chr8_2:69802004-69802023 | None:intergenic | 60.0% | |
| AGGGAGAGGGAGATGGAGAG+GGG | - | chr8_2:69802984-69803003 | None:intergenic | 60.0% | |
| GAGGGAGAGGGAGATGGAGA+GGG | - | chr8_2:69802985-69803004 | None:intergenic | 60.0% | |
| TGAGGGAGAGGGAGATGGAG+AGG | - | chr8_2:69802986-69803005 | None:intergenic | 60.0% | |
| ! | GGTAACGCCGCTTTCTCCGG+CGG | + | chr8_2:69799451-69799470 | Msa1265450:CDS | 65.0% |
| GAAACCGCCGCCGGAGAAAG+CGG | - | chr8_2:69799461-69799480 | None:intergenic | 65.0% | |
| AGGGGGAGGGGTAGCTCACT+TGG | - | chr8_2:69800764-69800783 | None:intergenic | 65.0% | |
| GAGGGAGATGGAGAGGGGGA+TGG | - | chr8_2:69802979-69802998 | None:intergenic | 65.0% | |
| GGGAGAGGGAGATGGAGAGG+GGG | - | chr8_2:69802983-69803002 | None:intergenic | 65.0% | |
| ! | AACGCCGCTTTCTCCGGCGG+CGG | + | chr8_2:69799454-69799473 | Msa1265450:CDS | 70.0% |
| !! | CAGGGAATCGGCACCGGCTG+AGG | - | chr8_2:69801455-69801474 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 69799293 | 69803462 | 69799293 | ID=Msa1265450;Name=Msa1265450 |
| chr8_2 | mRNA | 69799293 | 69803462 | 69799293 | ID=Msa1265450-mRNA-1;Parent=Msa1265450;Name=Msa1265450-mRNA-1;_AED=0.16;_eAED=0.16;_QI=143|1|1|1|1|1|10|324|276 |
| chr8_2 | exon | 69799293 | 69799531 | 69799293 | ID=Msa1265450-mRNA-1:exon:23098;Parent=Msa1265450-mRNA-1 |
| chr8_2 | exon | 69799675 | 69799785 | 69799675 | ID=Msa1265450-mRNA-1:exon:23099;Parent=Msa1265450-mRNA-1 |
| chr8_2 | exon | 69799860 | 69799957 | 69799860 | ID=Msa1265450-mRNA-1:exon:23100;Parent=Msa1265450-mRNA-1 |
| chr8_2 | exon | 69800065 | 69800106 | 69800065 | ID=Msa1265450-mRNA-1:exon:23101;Parent=Msa1265450-mRNA-1 |
| chr8_2 | exon | 69800872 | 69800949 | 69800872 | ID=Msa1265450-mRNA-1:exon:23102;Parent=Msa1265450-mRNA-1 |
| chr8_2 | exon | 69801118 | 69801196 | 69801118 | ID=Msa1265450-mRNA-1:exon:23103;Parent=Msa1265450-mRNA-1 |
| chr8_2 | exon | 69801996 | 69802094 | 69801996 | ID=Msa1265450-mRNA-1:exon:23104;Parent=Msa1265450-mRNA-1 |
| chr8_2 | exon | 69802170 | 69802246 | 69802170 | ID=Msa1265450-mRNA-1:exon:23105;Parent=Msa1265450-mRNA-1 |
| chr8_2 | exon | 69802886 | 69802954 | 69802886 | ID=Msa1265450-mRNA-1:exon:23106;Parent=Msa1265450-mRNA-1 |
| chr8_2 | exon | 69803057 | 69803462 | 69803057 | ID=Msa1265450-mRNA-1:exon:23107;Parent=Msa1265450-mRNA-1 |
| chr8_2 | five_prime_UTR | 69799293 | 69799435 | 69799293 | ID=Msa1265450-mRNA-1:five_prime_utr;Parent=Msa1265450-mRNA-1 |
| chr8_2 | CDS | 69799436 | 69799531 | 69799436 | ID=Msa1265450-mRNA-1:cds;Parent=Msa1265450-mRNA-1 |
| chr8_2 | CDS | 69799675 | 69799785 | 69799675 | ID=Msa1265450-mRNA-1:cds;Parent=Msa1265450-mRNA-1 |
| chr8_2 | CDS | 69799860 | 69799957 | 69799860 | ID=Msa1265450-mRNA-1:cds;Parent=Msa1265450-mRNA-1 |
| chr8_2 | CDS | 69800065 | 69800106 | 69800065 | ID=Msa1265450-mRNA-1:cds;Parent=Msa1265450-mRNA-1 |
| chr8_2 | CDS | 69800872 | 69800949 | 69800872 | ID=Msa1265450-mRNA-1:cds;Parent=Msa1265450-mRNA-1 |
| chr8_2 | CDS | 69801118 | 69801196 | 69801118 | ID=Msa1265450-mRNA-1:cds;Parent=Msa1265450-mRNA-1 |
| chr8_2 | CDS | 69801996 | 69802094 | 69801996 | ID=Msa1265450-mRNA-1:cds;Parent=Msa1265450-mRNA-1 |
| chr8_2 | CDS | 69802170 | 69802246 | 69802170 | ID=Msa1265450-mRNA-1:cds;Parent=Msa1265450-mRNA-1 |
| chr8_2 | CDS | 69802886 | 69802954 | 69802886 | ID=Msa1265450-mRNA-1:cds;Parent=Msa1265450-mRNA-1 |
| chr8_2 | CDS | 69803057 | 69803138 | 69803057 | ID=Msa1265450-mRNA-1:cds;Parent=Msa1265450-mRNA-1 |
| chr8_2 | three_prime_UTR | 69803139 | 69803462 | 69803139 | ID=Msa1265450-mRNA-1:three_prime_utr;Parent=Msa1265450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
