AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1129980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1129980 MtrunA17_Chr7g0275011 89.218 371 5 2 1 336 1 371 0.0 654
Msa1129980 MtrunA17_Chr1g0189931 61.308 367 105 3 1 332 1 365 7.18e-165 464
Msa1129980 MtrunA17_Chr7g0274991 63.408 358 93 3 15 334 11 368 6.21e-164 462
Msa1129980 MtrunA17_Chr7g0275021 62.185 357 100 2 12 333 12 368 2.26e-163 460
Msa1129980 MtrunA17_Chr6g0457921 64.146 357 90 4 15 333 8 364 4.30e-162 457
Msa1129980 MtrunA17_Chr7g0275001 63.305 357 93 4 14 334 7 361 1.95e-161 455
Msa1129980 MtrunA17_Chr4g0008851 61.749 366 98 4 6 334 9 369 1.18e-157 446
Msa1129980 MtrunA17_Chr1g0189901 58.649 370 111 4 1 333 1 365 4.21e-153 434
Msa1129980 MtrunA17_Chr7g0215961 59.889 359 95 4 11 333 9 354 4.89e-151 428
Msa1129980 MtrunA17_Chr1g0189891 56.425 358 114 5 13 334 8 359 6.18e-143 408
Msa1129980 MtrunA17_Chr1g0182811 55.182 357 123 4 14 333 13 369 2.54e-142 407
Msa1129980 MtrunA17_Chr7g0228261 97.938 97 2 0 240 336 1 97 1.27e-66 204
Msa1129980 MtrunA17_Chr1g0189911 60.959 146 56 1 188 332 2 147 1.80e-63 198
Msa1129980 MtrunA17_Chr5g0438621 34.545 330 174 9 14 305 11 336 5.87e-60 196
Msa1129980 MtrunA17_Chr8g0374101 32.533 375 205 10 4 331 3 376 9.91e-60 196
Msa1129980 MtrunA17_Chr8g0380041 35.376 359 191 9 12 331 7 363 4.76e-58 191
Msa1129980 MtrunA17_Chr3g0131321 33.134 335 176 6 34 325 34 363 7.65e-56 186
Msa1129980 MtrunA17_Chr3g0105401 30.233 344 202 6 7 313 1 343 1.25e-54 182
Msa1129980 MtrunA17_Chr4g0068441 33.636 330 179 6 34 325 35 362 1.37e-54 182
Msa1129980 MtrunA17_Chr5g0434621 32.047 337 188 7 14 314 7 338 2.90e-54 181
Msa1129980 MtrunA17_Chr3g0086641 33.973 365 189 11 9 328 10 367 5.27e-54 181
Msa1129980 MtrunA17_Chr3g0120861 32.399 321 172 8 34 314 38 353 2.31e-53 179
Msa1129980 MtrunA17_Chr3g0077571 30.411 365 208 7 5 331 1 357 2.97e-53 179
Msa1129980 MtrunA17_Chr4g0017431 30.769 351 201 6 16 325 8 357 3.10e-53 179
Msa1129980 MtrunA17_Chr5g0438631 33.546 313 168 6 34 308 28 338 3.71e-53 178
Msa1129980 MtrunA17_Chr2g0294311 32.065 368 196 10 12 329 8 371 4.91e-53 178
Msa1129980 MtrunA17_Chr5g0432101 30.769 338 193 6 12 310 11 346 1.54e-52 177
Msa1129980 MtrunA17_Chr5g0438641 30.409 342 190 9 12 313 13 346 7.80e-52 175
Msa1129980 MtrunA17_Chr2g0294301 31.549 355 203 6 13 329 14 366 2.48e-51 174
Msa1129980 MtrunA17_Chr8g0371491 33.125 320 169 7 34 313 36 350 8.97e-51 172
Msa1129980 MtrunA17_Chr2g0285061 32.113 355 201 10 15 331 13 365 1.54e-50 172
Msa1129980 MtrunA17_Chr3g0092131 29.882 338 195 6 14 314 6 338 1.88e-50 171
Msa1129980 MtrunA17_Chr1g0156891 32.493 357 191 9 9 320 14 365 1.31e-49 169
Msa1129980 MtrunA17_Chr3g0099161 29.178 377 210 10 1 331 61 426 2.40e-49 170
Msa1129980 MtrunA17_Chr5g0444401 30.882 340 186 8 34 330 28 361 9.62e-49 167
Msa1129980 MtrunA17_Chr1g0156921 30.571 350 186 8 14 313 14 356 1.07e-48 167
Msa1129980 MtrunA17_Chr3g0077581 34.718 337 177 10 35 331 37 370 1.25e-48 167
Msa1129980 MtrunA17_Chr1g0156931 31.700 347 184 9 15 314 14 354 1.30e-48 167
Msa1129980 MtrunA17_Chr1g0156901 33.856 319 167 6 34 313 50 363 5.05e-48 165
Msa1129980 MtrunA17_Chr8g0341001 31.105 344 195 9 12 313 4 347 7.13e-48 164
Msa1129980 MtrunA17_Chr3g0085881 34.036 332 168 10 35 329 34 351 2.39e-47 163
Msa1129980 MtrunA17_Chr2g0330781 32.188 320 176 7 34 312 31 350 4.16e-47 162
Msa1129980 MtrunA17_Chr5g0396511 30.606 330 193 5 36 329 48 377 5.40e-47 163
Msa1129980 MtrunA17_Chr4g0060811 31.329 316 178 5 36 314 29 342 7.26e-47 162
Msa1129980 MtrunA17_Chr2g0301641 30.523 344 198 7 30 334 39 380 9.35e-47 162
Msa1129980 MtrunA17_Chr2g0320671 31.765 340 197 7 9 313 5 344 1.19e-46 161
Msa1129980 MtrunA17_Chr1g0156911 30.986 355 189 8 15 321 9 355 1.49e-46 161
Msa1129980 MtrunA17_Chr2g0284951 32.733 333 173 11 35 329 34 353 2.59e-46 161
Msa1129980 MtrunA17_Chr2g0283191 29.143 350 192 9 6 304 8 352 2.75e-46 160
Msa1129980 MtrunA17_Chr5g0405831 31.366 322 175 8 34 314 43 359 3.14e-46 160
Msa1129980 MtrunA17_Chr4g0046151 31.176 340 176 10 17 304 15 348 5.31e-46 160
Msa1129980 MtrunA17_Chr3g0142941 30.530 321 175 7 34 313 47 360 1.16e-45 159
Msa1129980 MtrunA17_Chr3g0099151 29.532 342 191 8 34 331 87 422 3.17e-45 159
Msa1129980 MtrunA17_Chr8g0371481 30.061 326 182 8 34 318 41 361 5.05e-44 155
Msa1129980 MtrunA17_Chr3g0099231 28.869 336 199 5 34 331 28 361 9.21e-44 154
Msa1129980 MtrunA17_Chr5g0405821 30.408 319 181 8 34 313 43 359 1.04e-42 151
Msa1129980 MtrunA17_Chr8g0371471 29.448 326 183 9 34 318 41 360 1.61e-42 150
Msa1129980 MtrunA17_Chr2g0285001 31.548 336 179 11 35 329 34 359 4.72e-42 150
Msa1129980 MtrunA17_Chr5g0437421 30.341 323 185 8 34 316 32 354 4.42e-41 147
Msa1129980 MtrunA17_Chr3g0142921 30.625 320 177 7 34 313 36 350 4.80e-41 147
Msa1129980 MtrunA17_Chr2g0284991 27.424 361 208 11 11 328 8 357 7.67e-41 147
Msa1129980 MtrunA17_Chr1g0157001 30.030 333 189 7 39 328 41 372 3.01e-40 145
Msa1129980 MtrunA17_Chr8g0349321 31.548 336 181 8 34 329 37 363 6.09e-40 144
Msa1129980 MtrunA17_Chr8g0349341 29.794 339 183 8 34 329 37 363 3.01e-39 142
Msa1129980 MtrunA17_Chr8g0344931 27.747 364 213 10 10 331 6 361 7.21e-38 138
Msa1129980 MtrunA17_Chr8g0380031 29.851 335 186 9 34 331 84 406 1.04e-37 139
Msa1129980 MtrunA17_Chr2g0284921 28.479 309 177 5 35 307 35 335 1.46e-37 137
Msa1129980 MtrunA17_Chr8g0370981 25.537 419 214 11 2 330 8 418 8.59e-37 137
Msa1129980 MtrunA17_Chr4g0027521 28.213 319 191 7 34 314 27 345 2.67e-36 134
Msa1129980 MtrunA17_Chr8g0344941 27.536 345 202 8 14 316 21 359 4.31e-36 134
Msa1129980 MtrunA17_Chr2g0284941 29.191 346 198 12 14 329 9 337 4.82e-36 133
Msa1129980 MtrunA17_Chr8g0370951 29.096 354 187 12 28 329 25 366 1.50e-35 132
Msa1129980 MtrunA17_Chr1g0189921 63.542 96 35 0 14 109 11 106 1.53e-35 126
Msa1129980 MtrunA17_Chr8g0349331 29.664 327 173 8 32 329 33 331 1.52e-34 129
Msa1129980 MtrunA17_Chr3g0085231 23.497 366 220 8 5 329 2 348 3.47e-32 123
Msa1129980 MtrunA17_Chr5g0420811 28.529 333 186 11 14 307 11 330 7.59e-32 122
Msa1129980 MtrunA17_Chr8g0370961 30.222 225 138 5 116 325 19 239 1.32e-31 119
Msa1129980 MtrunA17_Chr8g0349301 31.915 282 145 10 34 279 37 307 4.97e-30 116
Msa1129980 MtrunA17_Chr7g0229591 38.667 150 72 3 34 163 30 179 8.88e-23 94.4
Msa1129980 MtrunA17_Chr4g0027571 26.364 220 147 5 117 321 3 222 2.33e-22 93.6
Msa1129980 MtrunA17_Chr1g0159971 26.776 366 200 12 9 315 22 378 5.54e-22 95.9
Msa1129980 MtrunA17_Chr1g0160031 28.488 344 170 14 34 315 39 368 4.34e-21 93.2
Msa1129980 MtrunA17_Chr3g0104821 25.072 347 194 11 26 315 36 373 1.42e-20 91.7
Msa1129980 MtrunA17_Chr6g0455661 23.554 242 157 4 104 318 220 460 1.52e-20 92.0
Msa1129980 MtrunA17_Chr6g0455661 60.606 66 25 1 34 99 31 95 9.26e-18 84.0
Msa1129980 MtrunA17_Chr1g0160101 27.095 358 183 14 34 326 42 386 5.72e-20 89.7
Msa1129980 MtrunA17_Chr8g0381581 25.291 344 186 12 34 315 40 374 7.92e-20 89.4
Msa1129980 MtrunA17_Chr6g0459921 24.868 189 126 2 144 317 161 348 1.19e-19 88.6
Msa1129980 MtrunA17_Chr1g0160011 29.155 343 169 15 34 315 40 369 2.23e-19 88.2
Msa1129980 MtrunA17_Chr7g0271551 28.135 327 173 14 36 314 38 350 2.73e-19 87.8
Msa1129980 MtrunA17_Chr7g0275291 25.439 342 187 11 33 316 32 363 7.07e-19 86.7
Msa1129980 MtrunA17_Chr2g0283501 25.137 366 200 14 8 315 11 360 3.27e-17 81.6
Msa1129980 MtrunA17_Chr1g0198351 25.490 306 176 13 34 302 43 333 1.79e-16 79.3
Msa1129980 MtrunA17_Chr7g0229581 28.986 138 96 2 186 321 18 155 1.53e-15 73.2
Msa1129980 MtrunA17_Chr2g0321991 45.055 91 44 2 14 102 11 97 1.34e-14 69.7
Msa1129980 MtrunA17_Chr6g0469511 38.053 113 50 2 34 126 30 142 1.36e-14 70.1
Msa1129980 MtrunA17_Chr2g0284931 25.962 208 142 4 126 331 23 220 2.20e-14 71.6
Msa1129980 MtrunA17_Chr6g0450731 24.695 328 191 10 34 316 33 349 2.88e-14 72.8
Msa1129980 MtrunA17_Chr1g0178931 23.926 326 179 14 33 312 36 338 6.31e-14 71.6
Msa1129980 MtrunA17_Chr8g0370971 42.857 84 47 1 31 113 35 118 2.09e-13 67.4
Msa1129980 MtrunA17_Chr5g0440501 25.225 222 140 7 115 314 15 232 2.97e-13 68.9
Msa1129980 MtrunA17_Chr4g0027561 47.368 76 39 1 34 108 30 105 7.64e-13 65.5
Msa1129980 MtrunA17_Chr4g0018561 60.000 45 18 0 34 78 30 74 1.05e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1129980 AT5G33370.1 66.964 336 76 2 33 333 29 364 4.46e-166 467
Msa1129980 AT3G04290.1 65.982 341 81 2 30 335 25 365 1.81e-161 456
Msa1129980 AT5G18430.1 66.372 339 77 4 30 331 24 362 7.72e-160 451
Msa1129980 AT4G28780.1 59.563 366 107 5 9 334 2 366 3.74e-151 429
Msa1129980 AT5G33370.2 64.122 262 59 2 33 259 29 290 7.22e-116 338
Msa1129980 AT5G08460.1 33.242 364 198 7 4 326 21 380 2.37e-60 198
Msa1129980 AT2G23540.1 32.938 337 184 8 34 328 48 384 6.19e-59 194
Msa1129980 AT1G29660.1 34.435 363 197 7 7 331 5 364 6.60e-58 191
Msa1129980 AT3G50400.1 33.978 362 188 13 14 325 8 368 1.27e-57 191
Msa1129980 AT5G15720.1 34.125 337 181 7 34 331 30 364 4.56e-57 189
Msa1129980 AT2G04570.1 31.563 339 193 7 15 316 9 345 1.62e-56 187
Msa1129980 AT4G26790.1 31.447 318 179 6 34 314 29 344 7.76e-56 186
Msa1129980 AT4G26790.2 31.447 318 179 6 34 314 29 344 7.76e-56 186
Msa1129980 AT2G42990.1 31.818 352 187 11 7 314 1 343 2.99e-55 184
Msa1129980 AT1G71250.1 31.642 335 190 5 34 331 41 373 5.27e-53 179
Msa1129980 AT1G75890.2 32.602 319 169 8 34 311 47 360 1.09e-52 178
Msa1129980 AT5G37690.1 33.758 314 169 6 36 313 29 339 1.26e-52 177
Msa1129980 AT1G75890.3 32.602 319 169 8 34 311 76 389 1.75e-52 178
Msa1129980 AT1G71691.2 34.328 335 179 8 34 332 55 384 5.08e-52 176
Msa1129980 AT5G42170.1 32.177 317 173 6 34 313 50 361 9.31e-52 175
Msa1129980 AT1G75880.2 33.229 319 172 7 34 314 52 367 1.02e-51 176
Msa1129980 AT1G75880.1 33.125 320 172 7 34 314 52 368 1.13e-51 175
Msa1129980 AT1G06990.1 31.056 322 178 6 34 313 37 356 3.45e-51 174
Msa1129980 AT1G20120.1 31.562 320 174 7 34 313 78 392 1.46e-50 173
Msa1129980 AT1G75890.1 31.325 332 169 8 34 311 47 373 1.49e-50 172
Msa1129980 AT5G45950.1 29.907 321 182 9 34 318 40 353 1.64e-50 172
Msa1129980 AT3G16370.1 33.019 318 173 7 34 313 30 345 5.56e-50 170
Msa1129980 AT2G30220.1 31.935 310 170 7 34 304 33 340 1.56e-49 169
Msa1129980 AT1G33811.1 33.239 355 185 11 26 331 19 370 1.65e-49 169
Msa1129980 AT2G30310.1 30.573 314 177 7 34 308 34 345 4.29e-49 168
Msa1129980 AT5G45670.1 34.535 333 177 8 14 308 9 338 5.07e-49 168
Msa1129980 AT1G29670.1 30.894 369 205 8 7 331 1 363 7.28e-49 167
Msa1129980 AT5G03820.1 31.871 342 191 8 14 313 8 349 1.03e-48 167
Msa1129980 AT5G45960.1 31.250 320 175 7 27 304 40 356 2.02e-48 167
Msa1129980 AT1G58430.1 30.422 332 187 7 14 302 10 340 2.17e-48 166
Msa1129980 AT5G03820.2 31.609 348 196 8 8 313 30 377 2.51e-48 167
Msa1129980 AT1G29670.2 30.728 371 207 8 5 331 67 431 2.52e-48 168
Msa1129980 AT2G31540.1 31.210 314 175 7 34 308 35 346 1.64e-47 164
Msa1129980 AT5G37690.2 32.166 314 166 7 36 313 29 331 3.63e-47 163
Msa1129980 AT4G18970.1 35.144 313 160 8 35 308 29 337 3.90e-47 163
Msa1129980 AT2G24560.1 29.118 340 191 8 9 302 4 339 6.86e-47 162
Msa1129980 AT1G74460.1 31.056 322 182 6 36 320 25 343 8.52e-47 162
Msa1129980 AT3G14820.1 31.003 329 174 10 34 320 32 349 1.06e-46 162
Msa1129980 AT5G03810.1 32.258 341 190 8 14 313 5 345 1.19e-46 162
Msa1129980 AT4G18970.2 35.144 313 160 8 35 308 29 337 1.39e-46 163
Msa1129980 AT3G53100.1 33.036 336 184 7 16 313 11 343 2.25e-46 161
Msa1129980 AT5G22810.1 33.437 323 167 11 34 313 34 351 6.66e-46 160
Msa1129980 AT5G41890.1 31.977 344 173 12 36 325 33 369 2.17e-45 159
Msa1129980 AT1G59406.1 29.014 355 208 7 5 321 1 349 4.69e-45 157
Msa1129980 AT1G59030.1 29.014 355 208 7 5 321 1 349 4.69e-45 157
Msa1129980 AT1G58725.1 29.014 355 208 7 5 321 1 349 4.69e-45 157
Msa1129980 AT1G75900.1 30.530 321 175 8 34 313 43 356 5.71e-44 155
Msa1129980 AT1G20130.2 30.211 331 175 8 34 313 184 509 8.84e-43 155
Msa1129980 AT1G20130.1 30.211 331 175 8 34 313 204 529 1.02e-42 155
Msa1129980 AT1G58520.3 30.061 326 177 9 34 321 30 342 1.66e-42 150
Msa1129980 AT1G58525.1 30.061 326 177 9 34 321 30 342 1.66e-42 150
Msa1129980 AT4G10950.2 29.819 332 197 4 34 329 71 402 2.50e-42 151
Msa1129980 AT1G20132.1 29.448 326 192 6 34 324 61 383 3.94e-42 150
Msa1129980 AT4G30140.1 32.317 328 175 10 35 329 34 347 1.91e-41 148
Msa1129980 AT4G10950.1 30.699 329 194 7 34 329 71 398 2.10e-41 149
Msa1129980 AT2G40250.1 29.114 316 181 6 34 308 36 349 2.78e-41 147
Msa1129980 AT5G55050.1 29.032 341 194 9 34 330 39 375 3.22e-41 148
Msa1129980 AT2G19060.1 30.380 316 175 8 35 315 31 336 6.95e-41 146
Msa1129980 AT3G43570.1 28.406 345 194 8 5 321 1 320 7.94e-40 143
Msa1129980 AT1G73610.1 31.889 323 166 9 28 313 31 336 8.82e-40 143
Msa1129980 AT1G20135.1 27.761 335 192 9 7 304 1 322 2.40e-39 142
Msa1129980 AT2G19010.1 31.595 326 172 12 35 323 31 342 6.51e-39 141
Msa1129980 AT2G19010.2 31.498 327 173 12 34 323 60 372 9.33e-39 141
Msa1129980 AT2G19050.1 28.797 316 178 9 35 315 32 335 4.73e-38 139
Msa1129980 AT5G15720.3 31.163 215 131 2 134 331 119 333 8.22e-37 135
Msa1129980 AT5G40990.1 27.344 384 217 11 1 332 1 374 1.70e-36 135
Msa1129980 AT5G63170.1 28.955 335 187 8 7 304 1 321 2.24e-36 134
Msa1129980 AT1G71691.1 33.816 207 120 3 141 332 79 283 9.75e-35 128
Msa1129980 AT1G23500.1 27.485 342 195 8 12 315 13 339 2.95e-34 129
Msa1129980 AT1G71120.1 29.518 332 198 10 27 325 24 352 2.82e-33 126
Msa1129980 AT1G53940.2 30.460 348 187 13 32 332 37 376 3.38e-33 126
Msa1129980 AT2G24560.2 27.946 297 164 8 9 259 4 296 4.10e-33 125
Msa1129980 AT5G15720.2 31.970 269 142 7 34 263 30 296 9.15e-32 121
Msa1129980 AT1G53990.1 27.441 379 205 14 5 331 4 364 5.76e-31 120
Msa1129980 AT3G14225.2 26.957 345 201 8 32 331 35 373 1.72e-30 119
Msa1129980 AT1G75910.1 26.100 341 200 8 15 313 5 335 2.13e-30 118
Msa1129980 AT1G75920.2 26.332 319 184 11 34 313 29 335 2.46e-30 118
Msa1129980 AT3G14225.1 26.934 349 200 9 32 331 35 377 3.77e-30 118
Msa1129980 AT1G75920.3 27.333 300 176 10 34 314 29 305 4.75e-30 117
Msa1129980 AT3G43550.1 27.740 292 168 6 5 259 1 286 5.34e-30 116
Msa1129980 AT4G16230.1 36.634 202 89 5 34 198 30 229 4.66e-29 112
Msa1129980 AT2G31550.1 28.641 206 127 4 121 308 2 205 7.24e-29 111
Msa1129980 AT2G19050.2 30.638 235 130 6 35 239 32 263 1.79e-28 112
Msa1129980 AT1G53920.1 26.959 319 194 9 34 315 48 364 4.01e-28 113
Msa1129980 AT1G75930.1 27.108 332 189 11 22 313 17 335 2.39e-27 110
Msa1129980 AT1G71691.3 32.824 262 135 8 34 259 55 311 1.22e-26 107
Msa1129980 AT1G75920.1 25.150 334 184 12 34 313 24 345 1.42e-26 108
Msa1129980 AT4G16233.1 36.000 125 79 1 208 331 6 130 9.55e-25 97.8
Msa1129980 AT1G54030.1 26.667 330 194 13 33 331 51 363 1.17e-23 101
Msa1129980 AT2G03980.2 26.537 309 186 9 34 305 43 347 6.68e-23 98.2
Msa1129980 AT2G03980.3 26.537 309 186 9 34 305 43 347 6.68e-23 98.2
Msa1129980 AT2G03980.1 26.537 309 186 9 34 305 43 347 6.68e-23 98.2
Msa1129980 AT2G03980.4 26.537 309 186 9 34 305 43 347 6.68e-23 98.2
Msa1129980 AT4G01130.1 25.401 374 206 13 8 319 9 371 7.48e-22 95.5
Msa1129980 AT1G56670.1 25.946 370 202 13 3 314 2 357 2.18e-21 94.0
Msa1129980 AT5G45910.1 28.045 353 179 13 27 315 23 364 6.50e-21 92.8
Msa1129980 AT1G09390.1 26.398 322 188 11 36 314 39 354 2.42e-18 85.5
Msa1129980 AT3G14220.1 23.263 331 208 11 35 330 33 352 4.82e-18 84.3
Msa1129980 AT3G62280.1 26.462 325 196 10 38 324 40 359 7.76e-18 84.0
Msa1129980 AT4G16220.1 48.958 96 45 3 14 108 11 103 2.93e-16 77.8
Msa1129980 AT2G27360.1 24.806 387 217 14 6 334 8 378 9.16e-16 78.2
Msa1129980 AT1G28580.1 26.437 348 182 15 26 315 35 366 1.95e-15 77.0
Msa1129980 AT1G54010.1 23.926 326 208 11 36 329 38 355 7.46e-15 75.1
Msa1129980 AT3G14210.1 26.176 340 203 14 34 336 36 364 1.03e-14 74.7
Msa1129980 AT3G05180.1 25.581 344 183 13 34 315 36 368 3.31e-14 73.2
Msa1129980 AT2G04020.1 27.727 220 121 6 34 216 43 261 7.34e-14 70.9
Msa1129980 AT4G01130.3 26.214 206 120 6 144 319 82 285 1.15e-13 70.9
Msa1129980 AT1G28670.1 25.070 359 202 13 13 315 18 365 1.36e-13 71.6
Msa1129980 AT5G03610.1 24.606 317 170 13 36 304 45 340 2.05e-13 70.9
Msa1129980 AT1G54030.2 27.468 233 123 11 33 234 51 268 2.60e-13 70.1
Msa1129980 AT2G04020.2 60.377 53 21 0 34 86 43 95 9.84e-13 68.6
Msa1129980 AT1G28590.1 25.074 339 198 11 26 315 34 365 5.53e-12 66.6

Find 88 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAAGATCAAGTACTATTT+AGG 0.206822 7_3:-82049201 None:intergenic
CAACAACTCAACAATGAAAT+TGG 0.265556 7_3:+82048642 Msa1129980:CDS
CAATTTCATTGTTGAGTTGT+TGG 0.301857 7_3:-82048641 None:intergenic
TTAAGTTCAGGGCTTAAATA+AGG 0.302412 7_3:-82047063 None:intergenic
TAAACATAATTAGAATATTT+AGG 0.305299 7_3:+82047319 Msa1129980:CDS
TAAATCCATGTCTGCCACTA+TGG 0.318143 7_3:+82046523 Msa1129980:exon
ACCGTGACGAATATGCATTT+TGG 0.331582 7_3:+82048935 Msa1129980:CDS
GGTGATTCTCTTGTTGATAA+TGG 0.342192 7_3:+82046644 Msa1129980:CDS
AATTAGAATATTTAGGCAAT+TGG 0.350952 7_3:+82047326 Msa1129980:CDS
CGAGCTGATGCTCCTCCTTA+TGG 0.356092 7_3:+82046695 Msa1129980:CDS
CAACGTGCTTTCTTTGTGTT+TGG 0.358588 7_3:+82046623 Msa1129980:CDS
ATTTAAGCCCTGAACTTAAC+GGG 0.376401 7_3:+82047067 Msa1129980:CDS
ATCACGCCAATACAATTTAC+CGG 0.383099 7_3:+82047494 Msa1129980:CDS
AATGCATATTCGTCACGGTT+AGG 0.390126 7_3:-82048931 None:intergenic
TCAAGATCAAGTACTATTTA+GGG 0.390467 7_3:-82049200 None:intergenic
CCCACTGGACGTTTCTCTAA+TGG 0.397307 7_3:+82046740 Msa1129980:CDS
AGTGTAGTTACCATATGCTT+GGG 0.398411 7_3:-82048724 None:intergenic
AATTGGTTCAAATGTATTCA+TGG 0.399785 7_3:+82048659 Msa1129980:CDS
TGTGATTTATATGTATAAGT+TGG 0.401902 7_3:+82049153 Msa1129980:three_prime_UTR
ATGCATATTCGTCACGGTTA+GGG 0.409068 7_3:-82048930 None:intergenic
ATCTTTCCCCGTTAAGTTCA+GGG 0.412800 7_3:-82047074 None:intergenic
TATTTAAGCCCTGAACTTAA+CGG 0.415361 7_3:+82047066 Msa1129980:CDS
AATCTTTCCCCGTTAAGTTC+AGG 0.420441 7_3:-82047075 None:intergenic
TTAGCCCAACGAGGCACAAA+TGG 0.422424 7_3:+82048555 Msa1129980:CDS
AAAACAGTGCTGAGATTCAT+TGG 0.424708 7_3:-82049036 None:intergenic
GTCAATAATCCCCAAGCATA+TGG 0.428487 7_3:+82048714 Msa1129980:CDS
ATTCATTGGATACATATAAT+CGG 0.429212 7_3:-82049022 None:intergenic
ACTAAGCTCTGAGTTTGTTC+AGG 0.433324 7_3:-82047393 None:intergenic
GGGCTTAAATAAGGCAAAGT+TGG 0.437321 7_3:-82047054 None:intergenic
TTTATATGTATAAGTTGGAT+TGG 0.442171 7_3:+82049158 Msa1129980:three_prime_UTR
ATTATATATCTGACATAATC+CGG 0.451030 7_3:-82047513 None:intergenic
CCTCGTTGGGCTAATTCTGC+TGG 0.453275 7_3:-82048546 None:intergenic
CAGAGAGTGAGTGGTCTCAT+TGG 0.455448 7_3:+82047369 Msa1129980:CDS
CAAGGACCCTACAATGGACT+TGG 0.456753 7_3:+82048880 Msa1129980:CDS
GCATAGCCCAAGTCCATTGT+AGG 0.458058 7_3:-82048887 None:intergenic
TAGCCCAACGAGGCACAAAT+GGG 0.458650 7_3:+82048556 Msa1129980:CDS
CATAATCCGGTAAATTGTAT+TGG 0.459599 7_3:-82047500 None:intergenic
GTGACAGGAACTGGTCCAAT+TGG 0.469779 7_3:+82048516 Msa1129980:CDS
TCTGCTGGAACACAACCAAT+TGG 0.476413 7_3:-82048531 None:intergenic
GATCATATTGATGGTGGCAT+TGG 0.489406 7_3:+82046574 Msa1129980:CDS
GCATTAGTACTCATCACTCT+TGG 0.489433 7_3:+82047423 Msa1129980:CDS
TTATCTTAACTGATAAAGTC+AGG 0.489894 7_3:-82046773 None:intergenic
TAGTGTAGTTACCATATGCT+TGG 0.491230 7_3:-82048725 None:intergenic
TGCATTCCATCCATCTGAAA+AGG 0.500058 7_3:+82048960 Msa1129980:CDS
AGGGTGATAGTGACAGGAAC+TGG 0.502345 7_3:+82048507 Msa1129980:intron
ATCATATTGATGGTGGCATT+GGG 0.506068 7_3:+82046575 Msa1129980:CDS
TATCCAACTCGCAGACCCAC+TGG 0.509258 7_3:+82046725 Msa1129980:CDS
TGGCGTGATCTTGCAGAGAA+TGG 0.511244 7_3:-82047480 None:intergenic
TGCAGGATTTGTTACATCAC+AGG 0.514441 7_3:+82048843 Msa1129980:intron
CGTCCAGTGGGTCTGCGAGT+TGG 0.515271 7_3:-82046728 None:intergenic
CAATGTAGTGATCATATTGA+TGG 0.516090 7_3:+82046565 Msa1129980:CDS
ATTGGTTCAAATGTATTCAT+GGG 0.520468 7_3:+82048660 Msa1129980:CDS
GTCTTAGTAGTGGATGGATG+AGG 0.525532 7_3:+82049224 Msa1129980:three_prime_UTR
AAGGGCCATCTGCCTTGTGT+TGG 0.528064 7_3:-82048685 None:intergenic
CAAAACCATAGTGGCAGACA+TGG 0.531076 7_3:-82046528 None:intergenic
GCACGTAGGGTGATAGTGAC+AGG 0.541987 7_3:+82048501 Msa1129980:intron
GTTGGATAATCAATGCCATA+AGG 0.544090 7_3:-82046710 None:intergenic
CAGGTAGCATGTTGTGGTCA+AGG 0.547719 7_3:+82048862 Msa1129980:CDS
GGGGATTATTGACGAAGTCA+AGG 0.550662 7_3:-82048704 None:intergenic
GGGATTATTGACGAAGTCAA+GGG 0.554031 7_3:-82048703 None:intergenic
TCTTAGTAGTGGATGGATGA+GGG 0.554581 7_3:+82049225 Msa1129980:three_prime_UTR
TTAGTACTCATCACTCTTGG+AGG 0.555068 7_3:+82047426 Msa1129980:CDS
TGAGACCACTCACTCTCTGC+TGG 0.555778 7_3:-82047365 None:intergenic
GGGAGCCAACACAAGGCAGA+TGG 0.561056 7_3:+82048680 Msa1129980:CDS
CAAACTCAGAGCTTAGTGAA+TGG 0.565128 7_3:+82047399 Msa1129980:CDS
TGATCTTGATGTCTTAGTAG+TGG 0.568020 7_3:+82049214 Msa1129980:three_prime_UTR
TCTTTATTATCAATCTCACT+TGG 0.568844 7_3:+82049258 Msa1129980:three_prime_UTR
TGGATTATTTGAATAAGTTG+TGG 0.570455 7_3:-82048621 None:intergenic
CTTGATGTCTTAGTAGTGGA+TGG 0.577600 7_3:+82049218 Msa1129980:three_prime_UTR
CCCAAAATGCATATTCGTCA+CGG 0.577781 7_3:-82048936 None:intergenic
CATAGCCCAAGTCCATTGTA+GGG 0.588202 7_3:-82048886 None:intergenic
CAATACCAGCAGAGAGTGAG+TGG 0.596408 7_3:+82047360 Msa1129980:CDS
ATAAGACTGCAAAACCATAG+TGG 0.606330 7_3:-82046537 None:intergenic
GTGTAGTTACCATATGCTTG+GGG 0.609486 7_3:-82048723 None:intergenic
ACATCACAGGTAGCATGTTG+TGG 0.620663 7_3:+82048856 Msa1129980:CDS
GCCCAACGAGGCACAAATGG+GGG 0.622538 7_3:+82048558 Msa1129980:CDS
CCATTAGAGAAACGTCCAGT+GGG 0.622708 7_3:-82046740 None:intergenic
TTTAAGCCCTGAACTTAACG+GGG 0.625695 7_3:+82047068 Msa1129980:CDS
TATTCATGGGAGCCAACACA+AGG 0.646177 7_3:+82048673 Msa1129980:CDS
TGTGGTCAAGGACCCTACAA+TGG 0.648138 7_3:+82048874 Msa1129980:CDS
GCCATTAGAGAAACGTCCAG+TGG 0.648287 7_3:-82046741 None:intergenic
AGCCCAACGAGGCACAAATG+GGG 0.652571 7_3:+82048557 Msa1129980:CDS
AAGGACCCTACAATGGACTT+GGG 0.653866 7_3:+82048881 Msa1129980:CDS
GGATAATCAATGCCATAAGG+AGG 0.667878 7_3:-82046707 None:intergenic
TTAGGGCATAAATTAGAGAG+TGG 0.679349 7_3:-82048913 None:intergenic
TGTAGTGATCATATTGATGG+TGG 0.697508 7_3:+82046568 Msa1129980:CDS
CCAGCAGAATTAGCCCAACG+AGG 0.739648 7_3:+82048546 Msa1129980:CDS
AAGTTGTTTCAAAAGCACAG+TGG 0.778633 7_3:+82046598 Msa1129980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGTATTACATTTTAATTTA+AGG + chr7_3:82047256-82047275 Msa1129980:intron 10.0%
!! TAAACATAATTAGAATATTT+AGG + chr7_3:82047319-82047338 Msa1129980:CDS 10.0%
!!! TAAGTAAACAAATTATTTTT+AGG + chr7_3:82047718-82047737 Msa1129980:intron 10.0%
!!! TTTTCTTAGATTATTAAAAA+AGG - chr7_3:82048012-82048031 None:intergenic 10.0%
!! TTCAAATGTTATTATTATAA+GGG - chr7_3:82048434-82048453 None:intergenic 10.0%
!! ATTCAAATGTTATTATTATA+AGG - chr7_3:82048435-82048454 None:intergenic 10.0%
!! TATATAGAGTAATTTAATAA+TGG + chr7_3:82048763-82048782 Msa1129980:intron 10.0%
!! TAATGTTAATCACATTATTA+CGG - chr7_3:82046975-82046994 None:intergenic 15.0%
!! TATTTAATGTATGTTTGAAT+TGG - chr7_3:82047230-82047249 None:intergenic 15.0%
!! AAATAAATCAAACCAAATAA+TGG - chr7_3:82047633-82047652 None:intergenic 15.0%
!! ATATAAAATGCACATTTAAT+TGG + chr7_3:82047665-82047684 Msa1129980:intron 15.0%
!! TATCATAAAACAAAACAAAA+CGG - chr7_3:82047960-82047979 None:intergenic 15.0%
!!! TTAATAAACTTTGTTTATTG+TGG - chr7_3:82048190-82048209 None:intergenic 15.0%
!! ATATGTTGGAATTATAATAA+GGG + chr7_3:82048282-82048301 Msa1129980:intron 15.0%
!!! AAATATAGTAGTTTTTGTAT+CGG + chr7_3:82048321-82048340 Msa1129980:intron 15.0%
!! AGTAATTGCATATATAATAA+TGG + chr7_3:82049290-82049309 Msa1129980:intron 15.0%
!! AAAAATGACTCAATTATTAT+AGG - chr7_3:82049750-82049769 None:intergenic 15.0%
!! AATGTTAATCACATTATTAC+GGG - chr7_3:82046974-82046993 None:intergenic 20.0%
!! AATTAGAATATTTAGGCAAT+TGG + chr7_3:82047326-82047345 Msa1129980:CDS 20.0%
!!! TTTTGTGAATAACTATTACT+TGG + chr7_3:82047455-82047474 Msa1129980:CDS 20.0%
!! ATTATATATCTGACATAATC+CGG - chr7_3:82047516-82047535 None:intergenic 20.0%
!!! ATTTGGTTTGATTTATTTCA+AGG + chr7_3:82047635-82047654 Msa1129980:intron 20.0%
!!! TTTGTTTACTTACTTTTTGA+CGG - chr7_3:82047710-82047729 None:intergenic 20.0%
!! GTCAATTACCATAAATAATT+TGG + chr7_3:82047884-82047903 Msa1129980:intron 20.0%
!! TTGAGTTACCAAATTATTTA+TGG - chr7_3:82047895-82047914 None:intergenic 20.0%
!!! TTCAAAAAAATGTGACATTT+TGG - chr7_3:82048064-82048083 None:intergenic 20.0%
!! TATAAAATGCCTCATTTATT+GGG - chr7_3:82048108-82048127 None:intergenic 20.0%
!! ATATAAAATGCCTCATTTAT+TGG - chr7_3:82048109-82048128 None:intergenic 20.0%
!! GATATGTTGGAATTATAATA+AGG + chr7_3:82048281-82048300 Msa1129980:intron 20.0%
!!! TCATTCAAAATTTCCTTTTT+TGG + chr7_3:82048389-82048408 Msa1129980:intron 20.0%
!! TAGCATAACTATTAGATTTA+TGG + chr7_3:82048786-82048805 Msa1129980:intron 20.0%
!! ATTCATTGGATACATATAAT+CGG - chr7_3:82049025-82049044 None:intergenic 20.0%
!! TGTGATTTATATGTATAAGT+TGG + chr7_3:82049153-82049172 Msa1129980:three_prime_UTR 20.0%
!!! TTTATATGTATAAGTTGGAT+TGG + chr7_3:82049158-82049177 Msa1129980:three_prime_UTR 20.0%
!! TAATGGCTTAATTAATGATT+TGG + chr7_3:82049307-82049326 Msa1129980:intron 20.0%
!! TTGTAACGTTAATAACTTAT+GGG - chr7_3:82049675-82049694 None:intergenic 20.0%
!! ATTGTAACGTTAATAACTTA+TGG - chr7_3:82049674-82049693 None:intergenic 20.0%
!! AAGTTATTAACGTTACAATT+TGG + chr7_3:82049367-82049386 Msa1129980:intron 20.0%
!! TTGTAACGTTAATAACTTAT+GGG - chr7_3:82049675-82049694 None:intergenic 20.0%
!! ATTGTAACGTTAATAACTTA+TGG - chr7_3:82049674-82049693 None:intergenic 20.0%
!! AAGTTATTAACGTTACAATT+TGG + chr7_3:82049367-82049386 Msa1129980:intron 20.0%
!! GAAACCAAAAAATAAGTTAA+GGG - chr7_3:82049587-82049606 None:intergenic 20.0%
!! GAAACCAAAAAATAAGTTAA+GGG + chr7_3:82049587-82049606 Msa1129980:intron 20.0%
!! TAAGTTATTACGTTACAATT+TGG - chr7_3:82049614-82049633 None:intergenic 20.0%
!! AATTGTAACGTAATAACTTA+TGG + chr7_3:82049614-82049633 Msa1129980:intron 20.0%
!! ATTGTAACGTAATAACTTAT+GGG + chr7_3:82049615-82049634 Msa1129980:intron 20.0%
!! AAGTTATTAACGTTACAATT+TGG - chr7_3:82049367-82049386 None:intergenic 20.0%
!! ATTGTAACGTTAATAACTTA+TGG + chr7_3:82049674-82049693 Msa1129980:intron 20.0%
!! TTGTAACGTTAATAACTTAT+GGG + chr7_3:82049675-82049694 Msa1129980:intron 20.0%
!! TATAGGCTTAATTAATGATT+TGG - chr7_3:82049733-82049752 None:intergenic 20.0%
!! ACATAGTAAAAAAAAAAGAG+TGG - chr7_3:82049801-82049820 None:intergenic 20.0%
! TTATCTTAACTGATAAAGTC+AGG - chr7_3:82046776-82046795 None:intergenic 25.0%
! GGATATAAATTAACTTTGCA+TGG - chr7_3:82046951-82046970 None:intergenic 25.0%
! ATGTTAATCACATTATTACG+GGG - chr7_3:82046973-82046992 None:intergenic 25.0%
!! ATTTTATGCAATGATTTTGC+AGG + chr7_3:82047012-82047031 Msa1129980:intron 25.0%
!! TGAGTATAAGAAGATTTTGA+GGG + chr7_3:82047539-82047558 Msa1129980:intron 25.0%
! ATAATAAAGGAAGAAAGTGA+TGG - chr7_3:82047587-82047606 None:intergenic 25.0%
! AGGAAAAAGACGTATAATAA+AGG - chr7_3:82047600-82047619 None:intergenic 25.0%
! AAAATGCACATTTAATTGGT+TGG + chr7_3:82047669-82047688 Msa1129980:intron 25.0%
! TGATGCAAAATTTGCAATAT+TGG - chr7_3:82047765-82047784 None:intergenic 25.0%
! ATTAGATCAATATCCAATGA+TGG - chr7_3:82047803-82047822 None:intergenic 25.0%
! ATCATTGGATATTGATCTAA+TGG + chr7_3:82047802-82047821 Msa1129980:intron 25.0%
! CTAATGTGCACAAATAAATT+AGG - chr7_3:82047858-82047877 None:intergenic 25.0%
!! AAATAATTTGGTAACTCAAG+TGG + chr7_3:82047896-82047915 Msa1129980:intron 25.0%
!! AATAATTTGGTAACTCAAGT+GGG + chr7_3:82047897-82047916 Msa1129980:intron 25.0%
!!! ATGTCACATTTTTTTGAAGT+AGG + chr7_3:82048066-82048085 Msa1129980:intron 25.0%
! TTTATTAAGATGCACTTCAA+TGG + chr7_3:82048202-82048221 Msa1129980:intron 25.0%
!!! TTCAAAATTTCCTTTTTTGG+AGG + chr7_3:82048392-82048411 Msa1129980:intron 25.0%
!!! TCAAAATTTCCTTTTTTGGA+GGG + chr7_3:82048393-82048412 Msa1129980:intron 25.0%
! TGGATTATTTGAATAAGTTG+TGG - chr7_3:82048624-82048643 None:intergenic 25.0%
!! AATTGGTTCAAATGTATTCA+TGG + chr7_3:82048659-82048678 Msa1129980:CDS 25.0%
!! ATTGGTTCAAATGTATTCAT+GGG + chr7_3:82048660-82048679 Msa1129980:CDS 25.0%
!!! CCAGTACTTTTTTTATAAGA+AGG - chr7_3:82048820-82048839 None:intergenic 25.0%
!! CCTTCTTATAAAAAAAGTAC+TGG + chr7_3:82048817-82048836 Msa1129980:intron 25.0%
! TCAAGATCAAGTACTATTTA+GGG - chr7_3:82049203-82049222 None:intergenic 25.0%
! ATCAAGATCAAGTACTATTT+AGG - chr7_3:82049204-82049223 None:intergenic 25.0%
! TCTTTATTATCAATCTCACT+TGG + chr7_3:82049258-82049277 Msa1129980:three_prime_UTR 25.0%
! GTAACCAACAAATAACTTAA+GGG - chr7_3:82049646-82049665 None:intergenic 25.0%
! TGTAACCAACAAATAACTTA+AGG - chr7_3:82049645-82049664 None:intergenic 25.0%
!!! GTTATTTGTTGGTTACATTT+TGG + chr7_3:82049338-82049357 Msa1129980:intron 25.0%
! GTAACCAACAAATAACTTAA+GGG - chr7_3:82049646-82049665 None:intergenic 25.0%
! TGTAACCAACAAATAACTTA+AGG - chr7_3:82049645-82049664 None:intergenic 25.0%
!!! GTTATTTGTTGGTTACATTT+TGG + chr7_3:82049338-82049357 Msa1129980:intron 25.0%
! CGAAACCAAAAAATAAGTTA+AGG - chr7_3:82049586-82049605 None:intergenic 25.0%
!!! CTTATTTTTTGGTTTCGTTT+TGG + chr7_3:82049458-82049477 Msa1129980:intron 25.0%
! GAAACCAACAAATAAGTTAA+GGG - chr7_3:82049556-82049575 None:intergenic 25.0%
! CCTTAACTCTAATAACTTAT+GGG - chr7_3:82049516-82049535 None:intergenic 25.0%
! CCATAAGTTATTAGAGTTAA+GGG + chr7_3:82049514-82049533 Msa1129980:intron 25.0%
! GAAACCAACAAATAAGTTAA+GGG + chr7_3:82049556-82049575 Msa1129980:intron 25.0%
!!! CTTATTTTTTGGTTTCGTTT+TGG - chr7_3:82049458-82049477 None:intergenic 25.0%
! CGAAACCAAAAAATAAGTTA+AGG + chr7_3:82049586-82049605 Msa1129980:intron 25.0%
!!! GTTATTTGTTGGTTACATTT+TGG - chr7_3:82049338-82049357 None:intergenic 25.0%
! TGTAACCAACAAATAACTTA+AGG + chr7_3:82049645-82049664 Msa1129980:intron 25.0%
! GTAACCAACAAATAACTTAA+GGG + chr7_3:82049646-82049665 Msa1129980:intron 25.0%
!!! GTTATTTGTTGGTTACATTT+TGG - chr7_3:82049338-82049357 None:intergenic 25.0%
! TGTAACCAACAAATAACTTA+AGG + chr7_3:82049645-82049664 Msa1129980:intron 25.0%
! GTAACCAACAAATAACTTAA+GGG + chr7_3:82049646-82049665 Msa1129980:intron 25.0%
! GTAAAAAAAAAAGAGTGGTA+AGG - chr7_3:82049796-82049815 None:intergenic 25.0%
CAATGTAGTGATCATATTGA+TGG + chr7_3:82046565-82046584 Msa1129980:CDS 30.0%
TGTTAATCACATTATTACGG+GGG - chr7_3:82046972-82046991 None:intergenic 30.0%
TTAAGTTCAGGGCTTAAATA+AGG - chr7_3:82047066-82047085 None:intergenic 30.0%
TATTTAAGCCCTGAACTTAA+CGG + chr7_3:82047066-82047085 Msa1129980:CDS 30.0%
ATTGGAATTCTCAATGATAC+CGG + chr7_3:82047129-82047148 Msa1129980:intron 30.0%
TTCACTTACAAATTGGATTC+CGG - chr7_3:82047151-82047170 None:intergenic 30.0%
CCAGAATTTCACTTACAAAT+TGG - chr7_3:82047158-82047177 None:intergenic 30.0%
CCAATTTGTAAGTGAAATTC+TGG + chr7_3:82047155-82047174 Msa1129980:intron 30.0%
AATGTATGTTTGAATTGGAC+CGG - chr7_3:82047225-82047244 None:intergenic 30.0%
CATAATCCGGTAAATTGTAT+TGG - chr7_3:82047503-82047522 None:intergenic 30.0%
! CTGAGTATAAGAAGATTTTG+AGG + chr7_3:82047538-82047557 Msa1129980:intron 30.0%
!!! CACAACATTTTTTCCATCAT+TGG + chr7_3:82047787-82047806 Msa1129980:intron 30.0%
TTGGATATTGATCTAATGGT+AGG + chr7_3:82047806-82047825 Msa1129980:intron 30.0%
GTAGGAAATATATGTGTGTT+TGG + chr7_3:82047824-82047843 Msa1129980:intron 30.0%
!! GTAGTGTATGTTTGTTATCA+TGG + chr7_3:82048140-82048159 Msa1129980:intron 30.0%
!! TAGAGTGTTGATTGATATGT+TGG + chr7_3:82048268-82048287 Msa1129980:intron 30.0%
! CAATTTCATTGTTGAGTTGT+TGG - chr7_3:82048644-82048663 None:intergenic 30.0%
CAACAACTCAACAATGAAAT+TGG + chr7_3:82048642-82048661 Msa1129980:CDS 30.0%
!! AAAAAAAGTACTGGTTATGC+AGG + chr7_3:82048826-82048845 Msa1129980:intron 30.0%
! ATTGTTCAACAGATTTTGTC+AGG + chr7_3:82048994-82049013 Msa1129980:CDS 30.0%
!!! TATAGCTTGCTATGTGTTTT+TGG - chr7_3:82049073-82049092 None:intergenic 30.0%
!!! TGGTCCCTTAACTTATTTTT+TGG + chr7_3:82049447-82049466 Msa1129980:intron 30.0%
CGAAACCAACAAATAAGTTA+AGG - chr7_3:82049555-82049574 None:intergenic 30.0%
!!! CTTATTTGTTGGTTTCGTTT+TGG + chr7_3:82049489-82049508 Msa1129980:intron 30.0%
CCCATAAGTTATTAGAGTTA+AGG + chr7_3:82049513-82049532 Msa1129980:intron 30.0%
CCCTTAACTCTAATAACTTA+TGG - chr7_3:82049517-82049536 None:intergenic 30.0%
!!! CTTATTTGTTGGTTTCGTTT+TGG - chr7_3:82049489-82049508 None:intergenic 30.0%
CGAAACCAACAAATAAGTTA+AGG + chr7_3:82049555-82049574 Msa1129980:intron 30.0%
!!! TGGTCCCTTAACTTATTTTT+TGG - chr7_3:82049447-82049466 None:intergenic 30.0%
GGTAAGGAAAAAGAAACTAT+TGG - chr7_3:82049780-82049799 None:intergenic 30.0%
ATAAGACTGCAAAACCATAG+TGG - chr7_3:82046540-82046559 None:intergenic 35.0%
TGTAGTGATCATATTGATGG+TGG + chr7_3:82046568-82046587 Msa1129980:CDS 35.0%
!! ATCATATTGATGGTGGCATT+GGG + chr7_3:82046575-82046594 Msa1129980:CDS 35.0%
! AAGTTGTTTCAAAAGCACAG+TGG + chr7_3:82046598-82046617 Msa1129980:CDS 35.0%
! GGTGATTCTCTTGTTGATAA+TGG + chr7_3:82046644-82046663 Msa1129980:CDS 35.0%
GTTGGATAATCAATGCCATA+AGG - chr7_3:82046713-82046732 None:intergenic 35.0%
TTTGCATGGTTACTAAGTGA+GGG - chr7_3:82046937-82046956 None:intergenic 35.0%
ATTTAAGCCCTGAACTTAAC+GGG + chr7_3:82047067-82047086 Msa1129980:CDS 35.0%
! TGTGATTTTGTCAAACTCAC+CGG + chr7_3:82047203-82047222 Msa1129980:intron 35.0%
ATCACGCCAATACAATTTAC+CGG + chr7_3:82047494-82047513 Msa1129980:CDS 35.0%
!! CAAATAATGGATCACATGCT+AGG - chr7_3:82047620-82047639 None:intergenic 35.0%
CTAGCATGTGATCCATTATT+TGG + chr7_3:82047618-82047637 Msa1129980:intron 35.0%
!! TTGGTTGGTAGTATCAATCA+TGG + chr7_3:82047684-82047703 Msa1129980:intron 35.0%
AGCAATTGATCTACAGACAA+GGG - chr7_3:82047925-82047944 None:intergenic 35.0%
AAGCAATTGATCTACAGACA+AGG - chr7_3:82047926-82047945 None:intergenic 35.0%
!! ACAAATAGAGAAGGGTACTT+GGG - chr7_3:82048038-82048057 None:intergenic 35.0%
! TTTGGTGCACAAATAGAGAA+GGG - chr7_3:82048046-82048065 None:intergenic 35.0%
!! TTTTGGTGCACAAATAGAGA+AGG - chr7_3:82048047-82048066 None:intergenic 35.0%
TCCACATTTCCCAATAAATG+AGG + chr7_3:82048096-82048115 Msa1129980:intron 35.0%
! TGGAATTATAATAAGGGCAC+TGG + chr7_3:82048288-82048307 Msa1129980:intron 35.0%
!! TATAATAAGGGCACTGGTTA+AGG + chr7_3:82048294-82048313 Msa1129980:intron 35.0%
ATTATAAGGGTCCTGTTAAC+CGG - chr7_3:82048421-82048440 None:intergenic 35.0%
TATCAGAGACTATACGATCT+TGG + chr7_3:82048477-82048496 Msa1129980:intron 35.0%
AGTGTAGTTACCATATGCTT+GGG - chr7_3:82048727-82048746 None:intergenic 35.0%
TAGTGTAGTTACCATATGCT+TGG - chr7_3:82048728-82048747 None:intergenic 35.0%
TTAGGGCATAAATTAGAGAG+TGG - chr7_3:82048916-82048935 None:intergenic 35.0%
! AAAACAGTGCTGAGATTCAT+TGG - chr7_3:82049039-82049058 None:intergenic 35.0%
!!! CTATGTGTTTTTGGAATCCA+AGG - chr7_3:82049064-82049083 None:intergenic 35.0%
TGATCTTGATGTCTTAGTAG+TGG + chr7_3:82049214-82049233 Msa1129980:three_prime_UTR 35.0%
TGGTCCCTTAAGTTATTTGT+TGG + chr7_3:82049327-82049346 Msa1129980:intron 35.0%
TGGTCCCTTAAGTTATTTGT+TGG + chr7_3:82049327-82049346 Msa1129980:intron 35.0%
TGGTCCCTTAACTTATTTGT+TGG + chr7_3:82049478-82049497 Msa1129980:intron 35.0%
TTAGAGTTAAGGGAGTAGTT+TGG + chr7_3:82049524-82049543 Msa1129980:intron 35.0%
TAGAGTTAAGGGAGTAGTTT+GGG + chr7_3:82049525-82049544 Msa1129980:intron 35.0%
TGGTCCCTTAACTTATTTGT+TGG - chr7_3:82049478-82049497 None:intergenic 35.0%
TGGTCCCTTAAGTTATTTGT+TGG - chr7_3:82049327-82049346 None:intergenic 35.0%
TGGTCCCTTAAGTTATTTGT+TGG - chr7_3:82049327-82049346 None:intergenic 35.0%
TAAATCCATGTCTGCCACTA+TGG + chr7_3:82046523-82046542 Msa1129980:exon 40.0%
!! GATCATATTGATGGTGGCAT+TGG + chr7_3:82046574-82046593 Msa1129980:CDS 40.0%
CAACGTGCTTTCTTTGTGTT+TGG + chr7_3:82046623-82046642 Msa1129980:CDS 40.0%
GGATAATCAATGCCATAAGG+AGG - chr7_3:82046710-82046729 None:intergenic 40.0%
AGTTAAGACGTGTGAGAAGT+AGG - chr7_3:82046914-82046933 None:intergenic 40.0%
CTTTGCATGGTTACTAAGTG+AGG - chr7_3:82046938-82046957 None:intergenic 40.0%
! ATTTTGCAGGTCAAGCACTT+GGG + chr7_3:82047025-82047044 Msa1129980:intron 40.0%
GGGCTTAAATAAGGCAAAGT+TGG - chr7_3:82047057-82047076 None:intergenic 40.0%
TTTAAGCCCTGAACTTAACG+GGG + chr7_3:82047068-82047087 Msa1129980:CDS 40.0%
ATCTTTCCCCGTTAAGTTCA+GGG - chr7_3:82047077-82047096 None:intergenic 40.0%
AATCTTTCCCCGTTAAGTTC+AGG - chr7_3:82047078-82047097 None:intergenic 40.0%
AATGCCAGCAGAAGCAAAAT+TGG - chr7_3:82047112-82047131 None:intergenic 40.0%
! AATTTTGCTTCTGCTGGCAT+TGG + chr7_3:82047111-82047130 Msa1129980:intron 40.0%
!! ACTAAGCTCTGAGTTTGTTC+AGG - chr7_3:82047396-82047415 None:intergenic 40.0%
CAAACTCAGAGCTTAGTGAA+TGG + chr7_3:82047399-82047418 Msa1129980:CDS 40.0%
GCATTAGTACTCATCACTCT+TGG + chr7_3:82047423-82047442 Msa1129980:CDS 40.0%
TTAGTACTCATCACTCTTGG+AGG + chr7_3:82047426-82047445 Msa1129980:CDS 40.0%
GCAATTGATCTACAGACAAG+GGG - chr7_3:82047924-82047943 None:intergenic 40.0%
!! CACAAATAGAGAAGGGTACT+TGG - chr7_3:82048039-82048058 None:intergenic 40.0%
GCCTCATTTATTGGGAAATG+TGG - chr7_3:82048100-82048119 None:intergenic 40.0%
GGGATTATTGACGAAGTCAA+GGG - chr7_3:82048706-82048725 None:intergenic 40.0%
GTCAATAATCCCCAAGCATA+TGG + chr7_3:82048714-82048733 Msa1129980:CDS 40.0%
GTGTAGTTACCATATGCTTG+GGG - chr7_3:82048726-82048745 None:intergenic 40.0%
!! TGCAGGATTTGTTACATCAC+AGG + chr7_3:82048843-82048862 Msa1129980:intron 40.0%
ATGCATATTCGTCACGGTTA+GGG - chr7_3:82048933-82048952 None:intergenic 40.0%
AATGCATATTCGTCACGGTT+AGG - chr7_3:82048934-82048953 None:intergenic 40.0%
! ACCGTGACGAATATGCATTT+TGG + chr7_3:82048935-82048954 Msa1129980:CDS 40.0%
CCCAAAATGCATATTCGTCA+CGG - chr7_3:82048939-82048958 None:intergenic 40.0%
! CCGTGACGAATATGCATTTT+GGG + chr7_3:82048936-82048955 Msa1129980:CDS 40.0%
TGCATTCCATCCATCTGAAA+AGG + chr7_3:82048960-82048979 Msa1129980:CDS 40.0%
!!! TGTTAGCCTTTTCAGATGGA+TGG - chr7_3:82048969-82048988 None:intergenic 40.0%
!!! AAGCTGTTAGCCTTTTCAGA+TGG - chr7_3:82048973-82048992 None:intergenic 40.0%
! CTTGATGTCTTAGTAGTGGA+TGG + chr7_3:82049218-82049237 Msa1129980:three_prime_UTR 40.0%
!! TCTTAGTAGTGGATGGATGA+GGG + chr7_3:82049225-82049244 Msa1129980:three_prime_UTR 40.0%
CAAAACCATAGTGGCAGACA+TGG - chr7_3:82046531-82046550 None:intergenic 45.0%
CCATTAGAGAAACGTCCAGT+GGG - chr7_3:82046743-82046762 None:intergenic 45.0%
! GATTTTGCAGGTCAAGCACT+TGG + chr7_3:82047024-82047043 Msa1129980:intron 45.0%
! TTTTGCAGGTCAAGCACTTG+GGG + chr7_3:82047026-82047045 Msa1129980:intron 45.0%
AACGGGGAAAGATTGCTTGT+TGG + chr7_3:82047084-82047103 Msa1129980:intron 45.0%
!!! TTTCCTTTTTTGGAGGGCAC+CGG + chr7_3:82048399-82048418 Msa1129980:intron 45.0%
TATACGATCTTGGAGCACGT+AGG + chr7_3:82048487-82048506 Msa1129980:intron 45.0%
ATACGATCTTGGAGCACGTA+GGG + chr7_3:82048488-82048507 Msa1129980:intron 45.0%
TCTGCTGGAACACAACCAAT+TGG - chr7_3:82048534-82048553 None:intergenic 45.0%
TATTCATGGGAGCCAACACA+AGG + chr7_3:82048673-82048692 Msa1129980:CDS 45.0%
GGGGATTATTGACGAAGTCA+AGG - chr7_3:82048707-82048726 None:intergenic 45.0%
ACATCACAGGTAGCATGTTG+TGG + chr7_3:82048856-82048875 Msa1129980:CDS 45.0%
! AAGGACCCTACAATGGACTT+GGG + chr7_3:82048881-82048900 Msa1129980:CDS 45.0%
CATAGCCCAAGTCCATTGTA+GGG - chr7_3:82048889-82048908 None:intergenic 45.0%
!!! TCTCAGCACTGTTTTAGCCT+TGG + chr7_3:82049044-82049063 Msa1129980:CDS 45.0%
!! GTCTTAGTAGTGGATGGATG+AGG + chr7_3:82049224-82049243 Msa1129980:three_prime_UTR 45.0%
CCCACTGGACGTTTCTCTAA+TGG + chr7_3:82046740-82046759 Msa1129980:CDS 50.0%
GCCATTAGAGAAACGTCCAG+TGG - chr7_3:82046744-82046763 None:intergenic 50.0%
! GGTGCCAATTTTGCTTCTGC+TGG + chr7_3:82047105-82047124 Msa1129980:intron 50.0%
CAATACCAGCAGAGAGTGAG+TGG + chr7_3:82047360-82047379 Msa1129980:CDS 50.0%
CAGAGAGTGAGTGGTCTCAT+TGG + chr7_3:82047369-82047388 Msa1129980:CDS 50.0%
TGGCGTGATCTTGCAGAGAA+TGG - chr7_3:82047483-82047502 None:intergenic 50.0%
TAACCGGTGCCCTCCAAAAA+AGG - chr7_3:82048405-82048424 None:intergenic 50.0%
! AGGGTGATAGTGACAGGAAC+TGG + chr7_3:82048507-82048526 Msa1129980:intron 50.0%
GTGACAGGAACTGGTCCAAT+TGG + chr7_3:82048516-82048535 Msa1129980:CDS 50.0%
TTAGCCCAACGAGGCACAAA+TGG + chr7_3:82048555-82048574 Msa1129980:CDS 50.0%
TAGCCCAACGAGGCACAAAT+GGG + chr7_3:82048556-82048575 Msa1129980:CDS 50.0%
CAGGTAGCATGTTGTGGTCA+AGG + chr7_3:82048862-82048881 Msa1129980:CDS 50.0%
TGTGGTCAAGGACCCTACAA+TGG + chr7_3:82048874-82048893 Msa1129980:CDS 50.0%
! CAAGGACCCTACAATGGACT+TGG + chr7_3:82048880-82048899 Msa1129980:CDS 50.0%
GCATAGCCCAAGTCCATTGT+AGG - chr7_3:82048890-82048909 None:intergenic 50.0%
CGAGCTGATGCTCCTCCTTA+TGG + chr7_3:82046695-82046714 Msa1129980:CDS 55.0%
TATCCAACTCGCAGACCCAC+TGG + chr7_3:82046725-82046744 Msa1129980:CDS 55.0%
TGAGACCACTCACTCTCTGC+TGG - chr7_3:82047368-82047387 None:intergenic 55.0%
!! TTTGGAGGGCACCGGTTAAC+AGG + chr7_3:82048407-82048426 Msa1129980:intron 55.0%
! GCACGTAGGGTGATAGTGAC+AGG + chr7_3:82048501-82048520 Msa1129980:intron 55.0%
CCTCGTTGGGCTAATTCTGC+TGG - chr7_3:82048549-82048568 None:intergenic 55.0%
CCAGCAGAATTAGCCCAACG+AGG + chr7_3:82048546-82048565 Msa1129980:CDS 55.0%
AGCCCAACGAGGCACAAATG+GGG + chr7_3:82048557-82048576 Msa1129980:CDS 55.0%
TCCCCCATTTGTGCCTCGTT+GGG - chr7_3:82048562-82048581 None:intergenic 55.0%
ATCCCCCATTTGTGCCTCGT+TGG - chr7_3:82048563-82048582 None:intergenic 55.0%
AAGGGCCATCTGCCTTGTGT+TGG - chr7_3:82048688-82048707 None:intergenic 55.0%
GCCCAACGAGGCACAAATGG+GGG + chr7_3:82048558-82048577 Msa1129980:CDS 60.0%
GGGAGCCAACACAAGGCAGA+TGG + chr7_3:82048680-82048699 Msa1129980:CDS 60.0%
CGTCCAGTGGGTCTGCGAGT+TGG - chr7_3:82046731-82046750 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 82046487 82049865 82046487 ID=Msa1129980;Name=Msa1129980
chr7_3 mRNA 82046487 82049865 82046487 ID=Msa1129980-mRNA-1;Parent=Msa1129980;Name=Msa1129980-mRNA-1;_AED=0.30;_eAED=0.30;_QI=43|0.6|0.5|1|0.8|0.66|6|335|336
chr7_3 exon 82046487 82046785 82046487 ID=Msa1129980-mRNA-1:exon:23991;Parent=Msa1129980-mRNA-1
chr7_3 exon 82047034 82047101 82047034 ID=Msa1129980-mRNA-1:exon:23992;Parent=Msa1129980-mRNA-1
chr7_3 exon 82047318 82047541 82047318 ID=Msa1129980-mRNA-1:exon:23993;Parent=Msa1129980-mRNA-1
chr7_3 exon 82048509 82048735 82048509 ID=Msa1129980-mRNA-1:exon:23994;Parent=Msa1129980-mRNA-1
chr7_3 exon 82048848 82049306 82048848 ID=Msa1129980-mRNA-1:exon:23995;Parent=Msa1129980-mRNA-1
chr7_3 exon 82049754 82049865 82049754 ID=Msa1129980-mRNA-1:exon:23996;Parent=Msa1129980-mRNA-1
chr7_3 five_prime_UTR 82046487 82046529 82046487 ID=Msa1129980-mRNA-1:five_prime_utr;Parent=Msa1129980-mRNA-1
chr7_3 CDS 82046530 82046785 82046530 ID=Msa1129980-mRNA-1:cds;Parent=Msa1129980-mRNA-1
chr7_3 CDS 82047034 82047101 82047034 ID=Msa1129980-mRNA-1:cds;Parent=Msa1129980-mRNA-1
chr7_3 CDS 82047318 82047541 82047318 ID=Msa1129980-mRNA-1:cds;Parent=Msa1129980-mRNA-1
chr7_3 CDS 82048509 82048735 82048509 ID=Msa1129980-mRNA-1:cds;Parent=Msa1129980-mRNA-1
chr7_3 CDS 82048848 82049083 82048848 ID=Msa1129980-mRNA-1:cds;Parent=Msa1129980-mRNA-1
chr7_3 three_prime_UTR 82049084 82049306 82049084 ID=Msa1129980-mRNA-1:three_prime_utr;Parent=Msa1129980-mRNA-1
chr7_3 three_prime_UTR 82049754 82049865 82049754 ID=Msa1129980-mRNA-1:three_prime_utr;Parent=Msa1129980-mRNA-1
Gene Sequence

>Msa1129980

ATGTCTGCCACTATGGTTTTGCAGTCTTATTACATCAATGTAGTGATCATATTGATGGTGGCATTGGGAAGTTGTTTCAAAAGCACAGTGGCACAACGTGCTTTCTTTGTGTTTGGTGATTCTCTTGTTGATAATGGTAACAACAATTACTTAGCAACTACAGCTCGAGCTGATGCTCCTCCTTATGGCATTGATTATCCAACTCGCAGACCCACTGGACGTTTCTCTAATGGCTACAACATTCCTGACTTTATCAGTCAAGCACTTGGGGCAGAACCAACTTTGCCTTATTTAAGCCCTGAACTTAACGGGGAAAGATTGCTTATAAACATAATTAGAATATTTAGGCAATTGGAGTATTTTCAACAATACCAGCAGAGAGTGAGTGGTCTCATTGGACCTGAACAAACTCAGAGCTTAGTGAATGGAGCATTAGTACTCATCACTCTTGGAGGCAATGATTTTGTGAATAACTATTACTTGGTGCCATTCTCTGCAAGATCACGCCAATACAATTTACCGGATTATGTCAGATATATAATATCTGAGGTGATAGTGACAGGAACTGGTCCAATTGGTTGTGTTCCAGCAGAATTAGCCCAACGAGGCACAAATGGGGGATGCTCAGTTGAGCTACAACGTGCAGCAGCTTTGTTCAATCCACAACTTATTCAAATAATCCAACAACTCAACAATGAAATTGGTTCAAATGTATTCATGGGAGCCAACACAAGGCAGATGGCCCTTGACTTCGTCAATAATCCCCAAGCATATGGATTTGTTACATCACAGGTAGCATGTTGTGGTCAAGGACCCTACAATGGACTTGGGCTATGCACACCACTCTCTAATTTATGCCCTAACCGTGACGAATATGCATTTTGGGATGCATTCCATCCATCTGAAAAGGCTAACAGCTTGATTGTTCAACAGATTTTGTCAGGCACAACCGATTATATGTATCCAATGAATCTCAGCACTGTTTTAGCCTTGGATTCCAAAAACACATAG

Protein sequence

>Msa1129980

MSATMVLQSYYINVVIILMVALGSCFKSTVAQRAFFVFGDSLVDNGNNNYLATTARADAPPYGIDYPTRRPTGRFSNGYNIPDFISQALGAEPTLPYLSPELNGERLLINIIRIFRQLEYFQQYQQRVSGLIGPEQTQSLVNGALVLITLGGNDFVNNYYLVPFSARSRQYNLPDYVRYIISEVIVTGTGPIGCVPAELAQRGTNGGCSVELQRAAALFNPQLIQIIQQLNNEIGSNVFMGANTRQMALDFVNNPQAYGFVTSQVACCGQGPYNGLGLCTPLSNLCPNRDEYAFWDAFHPSEKANSLIVQQILSGTTDYMYPMNLSTVLALDSKNT*